Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
UBR4	23352	hgsc.bcm.edu	hg19	1	19490752	19490752	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	UBR4	NM_020765	exon33	c.C4695T	p.S1565S	CCATCTGCTCAGC	.	204.0	137.0	295.0	0.0	.	415	.	.	Atlas-SNP
PITHD1	57095	hgsc.bcm.edu	hg19	1	24113847	24113847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PITHD1	NM_020362	exon6	c.A617T	p.Q206L	CCCCACAGACACA	.	53.0	36.0	81.0	0.0	.	20	.	.	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40701785	40701785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	RLF	NM_012421	exon8	c.G1411T	p.D471Y	TTTTGGGACTGGA	.	81.0	56.0	109.0	0.0	.	152	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43916134	43916134	+	Missense_Mutation	SNP	T	T	G	rs75906384	bycluster	TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SZT2	NM_015284	exon71	c.T10111G	p.W3371G	ACCCTCTGGACCC	.	65.0	39.0	114.0	0.0	.	383	.	.	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	hg19	1	86426957	86426957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	COL24A1	NM_152890	exon24	c.G2537T	p.G846V	ATATTTCCTTGAT	.	176.0	121.0	210.0	0.0	.	202	.	.	Atlas-SNP
ADAM30	11085	hgsc.bcm.edu	hg19	1	120436833	120436833	+	Silent	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ADAM30	NM_021794	exon1	c.G2127T	p.R709R	CACTTGCCGGAAA	.	94.0	61.0	144.0	0.0	.	88	.	.	Atlas-SNP
SPRR2G	6706	hgsc.bcm.edu	hg19	1	153122523	153122523	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SPRR2G	NM_001014291	exon2	c.A64T	p.K22X	GGCACTTTGGCGT	.	59.0	10.0	33.0	0.0	.	20	.	.	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154226519	154226519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	UBAP2L	NM_001127320	exon15	c.C1808T	p.P603L	GGTACCCCAGCTC	.	131.0	24.0	102.0	0.0	.	197	.	.	Atlas-SNP
C1orf53	388722	hgsc.bcm.edu	hg19	1	197872017	197872017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	C1orf53	NM_001024594	exon1	c.G238A	p.A80T	CAGATCGCGGAGC	.	63.0	17.0	48.0	0.0	.	18	.	.	Atlas-SNP
RNPEP	6051	hgsc.bcm.edu	hg19	1	201970854	201970854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	RNPEP	NM_020216	exon8	c.A1385G	p.Y462C	TGGAATATTTCCC	.	121.0	52.0	114.0	0.0	.	39	.	.	Atlas-SNP
WNT3A	89780	hgsc.bcm.edu	hg19	1	228238391	228238391	+	Silent	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	WNT3A	NM_033131	exon3	c.C348A	p.A116A	CATTGCCTCAGCC	.	109.0	54.0	89.0	0.0	.	40	.	.	Atlas-SNP
KCNK3	3777	hgsc.bcm.edu	hg19	2	26951035	26951035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	KCNK3	NM_002246	exon2	c.G784A	p.A262T	CACCGCGCGCTGC	.	66.0	23.0	38.0	0.0	.	43	.	.	Atlas-SNP
UCN	7349	hgsc.bcm.edu	hg19	2	27530547	27530547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	UCN	NM_003353	exon2	c.C217A	p.L73I	TCCCGAGTCCCAA	.	1009.0	233.0	1005.0	0.0	.	4	.	.	Atlas-SNP
PLEKHB2	55041	hgsc.bcm.edu	hg19	2	131890529	131890529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PLEKHB2	NM_001267062	exon6	c.C388T	p.P130S	TCACCTCCACCAT	.	229.0	128.0	181.0	0.0	.	47	.	.	Atlas-SNP
R3HDM1	23518	hgsc.bcm.edu	hg19	2	136389287	136389287	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	R3HDM1	NM_015361	exon8	c.498-1G>A	.	GTTTCAGGGACAG	.	110.0	28.0	105.0	0.0	.	84	.	.	Atlas-SNP
PIKFYVE	200576	hgsc.bcm.edu	hg19	2	209188869	209188869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PIKFYVE	NM_015040	exon18	c.A2194G	p.R732G	TAGGAAAGGGAAT	.	145.0	36.0	95.0	0.0	.	223	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212537964	212537964	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ERBB4	NM_001042599	exon14	c.G1641A	p.E547E	GCCATTCTCAAAC	.	74.0	17.0	70.0	0.0	.	480	.	.	Atlas-SNP
TUBA4A	7277	hgsc.bcm.edu	hg19	2	220115164	220115164	+	Silent	SNP	G	G	A	rs199590938		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TUBA4A	NM_006000	exon4	c.C1257T	p.S419S	GGCCTCGGAGAAC	.	186.0	98.0	201.0	0.0	.	96	.	G|0.999;A|0.001	Atlas-SNP
CHPF	79586	hgsc.bcm.edu	hg19	2	220404725	220404725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CHPF	NM_024536	exon4	c.G1708A	p.V570M	CTGCCACGTGGGC	.	132.0	70.0	129.0	0.0	.	56	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220502422	220502422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLC4A3	NM_201574	exon17	c.C2736A	p.S912R	CCCCAGCCCGAGG	.	183.0	56.0	178.0	0.0	.	144	.	.	Atlas-SNP
SLC16A14	151473	hgsc.bcm.edu	hg19	2	230924025	230924025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLC16A14	NM_152527	exon2	c.G44A	p.G15D	TTGGGGCCATCTT	.	147.0	78.0	150.0	0.0	.	75	.	.	Atlas-SNP
TMEM40	55287	hgsc.bcm.edu	hg19	3	12791298	12791298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TMEM40	NM_018306	exon2	c.G34T	p.D12Y	TGTTGTCCTGAGG	.	198.0	31.0	171.0	0.0	.	22	.	.	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	hg19	3	39166927	39166927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TTC21A	NM_145755	exon11	c.G1320T	p.M440I	CAGCATGCAAGGC	.	52.0	21.0	74.0	0.0	.	96	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	CTNNB1,gallbladder,other,0,161	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	122.0	44.0	142.0	0.0	.	4904	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49161060	49161060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	LAMB2	NM_002292	exon25	c.G3802T	p.E1268X	CAATTTCACGCCT	.	43.0	14.0	78.0	0.0	.	156	.	.	Atlas-SNP
IFRD2	7866	hgsc.bcm.edu	hg19	3	50328069	50328069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	IFRD2	NM_006764	exon2	c.G292C	p.D98H	CCTCATCGTCACT	.	51.0	12.0	79.0	0.0	.	34	.	.	Atlas-SNP
TLR9	54106	hgsc.bcm.edu	hg19	3	52255747	52255747	+	Missense_Mutation	SNP	C	C	A	rs148303873	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TLR9	NM_017442	exon2	c.G2585T	p.G862V	TCTCGCCCACTTT	.	65.0	27.0	141.0	0.0	.	72	.	C|0.998;T|0.002	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58121724	58121724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FLNB	NM_001164317	exon29	c.A4783C	p.K1595Q	AAACCCAAAAGAG	.	151.0	43.0	191.0	0.0	.	430	.	.	Atlas-SNP
ARL13B	200894	hgsc.bcm.edu	hg19	3	93762021	93762021	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ARL13B	NM_182896	exon7	c.A961T	p.K321X	AATTATAAGGAGG	.	448.0	142.0	691.0	0.0	.	52	.	.	Atlas-SNP
POPDC2	64091	hgsc.bcm.edu	hg19	3	119378986	119378986	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	POPDC2	NM_022135	exon1	c.G285A	p.L95L	GTATACCAGGTGT	.	87.0	22.0	106.0	0.0	.	36	.	.	Atlas-SNP
RAB43	339122	hgsc.bcm.edu	hg19	3	128813830	128813830	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	RAB43	NM_001204886	exon3	c.C387G	p.I129M	CTCACCGATCAGC	.	32.0	10.0	54.0	0.0	.	13	.	.	Atlas-SNP
BDH1	622	hgsc.bcm.edu	hg19	3	197238829	197238829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	BDH1	NM_004051	exon7	c.G969T	p.W323C	TCGCAGCCACCAG	.	92.0	29.0	119.0	0.0	.	24	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6052342	6052342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	JAKMIP1	NM_001099433	exon14	c.G1871T	p.S624I	AGAGCGCTGCTGT	.	91.0	64.0	116.0	0.0	.	250	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	167020562	167020562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TLL1	NM_012464	exon20	c.A2790T	p.E930D	ACTTGAATTATCC	.	193.0	127.0	228.0	1.0	.	194	.	.	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	hg19	5	484645	484645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLC9A3	NM_004174	exon5	c.G922A	p.A308T	GGATGGCCGACAG	.	152.0	72.0	131.0	0.0	.	89	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16701801	16701801	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	MYO10	NM_012334	exon25	c.G2703A	p.Q901Q	CATGCGCTGCAGG	.	66.0	17.0	62.0	0.0	.	198	.	.	Atlas-SNP
CAST	831	hgsc.bcm.edu	hg19	5	96100971	96100971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CAST	NM_001042440	exon24	c.G1856A	p.S619N	CTGACAGTCTAGG	.	288.0	103.0	208.0	0.0	.	58	.	.	Atlas-SNP
TSLP	85480	hgsc.bcm.edu	hg19	5	110409265	110409265	+	Silent	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TSLP	NM_033035	exon3	c.G273T	p.A91A	CTGCGCGTCGCTC	.	287.0	122.0	213.0	0.0	.	22	.	.	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	hg19	5	140782595	140782595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PCDHGA9	NM_032089	exon1	c.G76T	p.A26S	TGGGAGGCCAGGG	.	148.0	52.0	92.0	0.0	.	110	.	.	Atlas-SNP
FCHSD1	89848	hgsc.bcm.edu	hg19	5	141021270	141021270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FCHSD1	NM_033449	exon19	c.C2006T	p.P669L	CTTACCGGCCTGA	.	132.0	55.0	107.0	0.0	.	51	.	.	Atlas-SNP
DPYSL3	1809	hgsc.bcm.edu	hg19	5	146777290	146777290	+	Missense_Mutation	SNP	C	C	A	rs377459296	alternate_allele	TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	DPYSL3	NM_001197294	exon12	c.G1742T	p.R581L	ATGAAGCGGCCAG	.	45.0	23.0	44.0	0.0	.	58	.	.	Atlas-SNP
ALDH5A1	7915	hgsc.bcm.edu	hg19	6	24495386	24495386	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ALDH5A1	NM_001080	exon1	c.C162T	p.L54L	GGGCCTCTCTGCG	.	82.0	31.0	51.0	0.0	.	42	.	.	Atlas-SNP
HIST1H2BC	8347	hgsc.bcm.edu	hg19	6	26123951	26123951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	HIST1H2BC,tonsil,lymphoid_neoplasm,0,1	HIST1H2BC	NM_003526	exon1	c.G182T	p.G61V	ATGATGCCCATGG	.	98.0	49.0	104.0	0.0	.	35	.	.	Atlas-SNP
HIST1H2AK	8330	hgsc.bcm.edu	hg19	6	27805803	27805803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	HIST1H2AK	NM_003510	exon1	c.G315T	p.Q105H	ACCACCCTGGGCG	.	164.0	75.0	133.0	0.0	.	28	.	.	Atlas-SNP
ZSCAN23	222696	hgsc.bcm.edu	hg19	6	28402493	28402493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ZSCAN23	NM_001012455	exon4	c.T919C	p.C307R	CACTGCACTGGTA	.	90.0	20.0	61.0	0.0	.	18	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51907825	51907825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PKHD1	NM_170724	exon27	c.A2929G	p.N977D	TCTGGTTTGAGAA	.	116.0	27.0	94.0	0.0	.	927	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111680114	111680114	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	REV3L	NM_002912	exon17	c.T6983A	p.I2328N	GATGAGATGCAGT	.	124.0	65.0	115.0	0.0	.	386	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48428794	48428794	+	Silent	SNP	C	C	T	rs374031988		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	ABCA13_ENST00000435803,caecum,carcinoma,0,2	ABCA13	NM_152701	exon37	c.C11631T	p.N3877N	GACAAACGGTGCC	.	172.0	59.0	150.0	0.0	.	1192	.	.	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	hg19	7	127992475	127992475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PRRT4	NM_001174164	exon6	c.T1135G	p.L379V	CCAGCAAGGCAAC	.	85.0	15.0	47.0	0.0	.	31	.	.	Atlas-SNP
EZH2	2146	hgsc.bcm.edu	hg19	7	148515060	148515060	+	Silent	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	EZH2	NM_004456	exon10	c.A1149T	p.T383T	ACTGTCTGTATCC	.	139.0	58.0	95.0	0.0	.	823	.	.	Atlas-SNP
TMEM176B	28959	hgsc.bcm.edu	hg19	7	150488705	150488705	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TMEM176B	NM_014020	exon7	c.G727T	p.E243X	ATCCTTCCTCATT	.	43.0	14.0	51.0	0.0	.	36	.	.	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	hg19	8	39022641	39022641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ADAM32	NM_145004	exon9	c.A759C	p.E253D	AGATGAATTATTG	.	50.0	31.0	66.0	0.0	.	70	.	.	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	hg19	8	39022655	39022655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ADAM32	NM_145004	exon9	c.T773C	p.F258S	AAAAATTTTTAGA	.	51.0	32.0	57.0	0.0	.	70	.	.	Atlas-SNP
NUDCD1	84955	hgsc.bcm.edu	hg19	8	110305580	110305580	+	Missense_Mutation	SNP	T	T	G	rs150705202	byfrequency;alternate_allele	TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	NUDCD1	NM_032869	exon4	c.A633C	p.K211N	TTGATTTTTCTTA	.	101.0	16.0	57.0	0.0	.	58	.	T|1.000;C|0.000	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110520397	110520397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PKHD1L1	NM_177531	exon70	c.G11299T	p.A3767S	GAATATGCAATGA	.	121.0	5.0	89.0	0.0	.	522	.	.	Atlas-SNP
WDR67	93594	hgsc.bcm.edu	hg19	8	124089437	124089437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	WDR67	NM_001145088	exon2	c.A164C	p.D55A	CAGGCGACTGCTT	.	79.0	36.0	62.0	0.0	.	97	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	134147018	134147018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TG	NM_003235	exon48	c.T8287A	p.S2763T	CCAGGCTCTAAGA	.	76.0	26.0	61.0	0.0	.	416	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96024181	96024181	+	Missense_Mutation	SNP	C	C	T	rs370654793		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	WNK2	NM_006648	exon12	c.C3152T	p.S1051L	TCCTCTCGCCGCC	.	32.0	7.0	42.0	0.0	.	277	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135202688	135202688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SETX	NM_015046	exon10	c.A4297C	p.T1433P	CATCAGTTGCTGG	.	85.0	58.0	100.0	0.0	.	234	.	.	Atlas-SNP
SUV39H2	79723	hgsc.bcm.edu	hg19	10	14923615	14923615	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SUV39H2	NM_001193426	exon2	c.G148T	p.E50X	GAGGTGGAATACT	.	130.0	43.0	105.0	0.0	.	72	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55955617	55955617	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PCDH15	NM_001142763	exon12	c.C1146T	p.A382A	GGCAAAGGCAGGA	.	103.0	32.0	92.0	0.0	.	1715	.	.	Atlas-SNP
SLC16A9	220963	hgsc.bcm.edu	hg19	10	61413702	61413702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLC16A9	NM_194298	exon5	c.G1082A	p.G361E	AGTATCCCTAAAA	.	73.0	31.0	60.0	0.0	.	58	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	hg19	10	70406241	70406241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TET1	NM_030625	exon4	c.A3755T	p.E1252V	CAGCAGAGGAAAA	.	178.0	83.0	140.0	0.0	.	255	.	.	Atlas-SNP
OPALIN	93377	hgsc.bcm.edu	hg19	10	98105735	98105735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	OPALIN	NM_033207	exon6	c.G389C	p.G130A	CACAATCCCCTCC	.	86.0	19.0	36.0	0.0	.	31	.	.	Atlas-SNP
FGF8	2253	hgsc.bcm.edu	hg19	10	103535640	103535640	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FGF8	NM_033164	exon1	c.C18T	p.S6S	CAGCGCGGAGCGG	.	250.0	52.0	198.0	0.0	.	23	.	.	Atlas-SNP
FANK1	92565	hgsc.bcm.edu	hg19	10	127685132	127685132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FANK1	NM_145235	exon5	c.G412T	p.D138Y	AAGGTTGATGTTC	.	58.0	38.0	85.0	0.0	.	46	.	.	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26743147	26743147	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLC5A12	NM_178498	exon1	c.C115T	p.R39X	ACTCTCGGGAAGT	.	257.0	16.0	211.0	0.0	.	134	.	.	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563231	55563231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	OR5D14	NM_001004735	exon1	c.A200G	p.H67R	TTAGTCACCTCTC	.	71.0	18.0	51.0	0.0	.	116	.	.	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563576	55563576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	OR5D14	NM_001004735	exon1	c.A545G	p.E182G	TTTGTGAGTATAC	.	80.0	14.0	85.0	0.0	.	116	.	.	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	hg19	11	55681236	55681236	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	OR5W2	NM_001001960	exon1	c.T823A	p.S275T	ACAATGAGGTCAT	.	209.0	47.0	186.0	0.0	.	112	.	.	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55904552	55904552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	OR8J3,NS,carcinoma,0,1	OR8J3	NM_001004064	exon1	c.C643A	p.L215I	ATACTAGAACTGT	.	44.0	10.0	54.0	1.0	.	112	.	.	Atlas-SNP
SLC22A25	387601	hgsc.bcm.edu	hg19	11	62984853	62984853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLC22A25	NM_199352	exon4	c.A763G	p.I255V	CTCGAATGACAAA	.	117.0	28.0	97.0	0.0	.	87	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78369713	78369713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	.	NM_001098816	exon34	c.G7700A	p.G2567D	CCCTTGCCAAAGA	.	84.0	41.0	67.0	0.0	.	.	.	.	Atlas-SNP
GPR83	10888	hgsc.bcm.edu	hg19	11	94113805	94113805	+	Missense_Mutation	SNP	C	C	T	rs139287789		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	GPR83	NM_016540	exon4	c.G782A	p.R261H	GCCACACGAGCGT	.	102.0	30.0	78.0	0.0	.	47	.	C|1.000;T|0.000	Atlas-SNP
MTMR2	8898	hgsc.bcm.edu	hg19	11	95595469	95595469	+	Silent	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	MTMR2	NM_016156	exon4	c.G324T	p.T108T	ATAATTCGTGACA	.	60.0	7.0	77.0	0.0	.	79	.	.	Atlas-SNP
CHEK1	1111	hgsc.bcm.edu	hg19	11	125513708	125513708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CHEK1	NM_001244846	exon9	c.C836T	p.T279I	GAGTCACTTCAGG	.	45.0	9.0	54.0	0.0	.	44	.	.	Atlas-SNP
TSPAN9	10867	hgsc.bcm.edu	hg19	12	3390913	3390913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TSPAN9	NM_006675	exon8	c.A578C	p.K193T	ATGAAAAGGTGAA	.	103.0	22.0	86.0	0.0	.	20	.	.	Atlas-SNP
ACRBP	84519	hgsc.bcm.edu	hg19	12	6756045	6756045	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ACRBP	NM_032489	exon2	c.C177T	p.T59T	ACGGCAGGTAGTC	.	119.0	54.0	86.0	0.0	.	52	.	.	Atlas-SNP
CNOT2	4848	hgsc.bcm.edu	hg19	12	70726591	70726591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CNOT2	NM_001199302	exon8	c.A614G	p.N205S	GAATGAATAACTC	.	87.0	45.0	59.0	0.0	.	53	.	.	Atlas-SNP
RAB21	23011	hgsc.bcm.edu	hg19	12	72164380	72164380	+	Silent	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	RAB21	NM_014999	exon3	c.A228T	p.A76A	TACGGCAGGTCAA	.	95.0	37.0	67.0	0.0	.	17	.	.	Atlas-SNP
APPL2	55198	hgsc.bcm.edu	hg19	12	105591692	105591692	+	Silent	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	APPL2	NM_001251904	exon11	c.T921C	p.Y307Y	GAAGAAATAAAGC	.	166.0	63.0	140.0	0.0	.	69	.	.	Atlas-SNP
EFHA1	221154	hgsc.bcm.edu	hg19	13	22084242	22084242	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	EFHA1	NM_152726	exon9	c.664-2A>C	.	GCTTCCTATTAAA	.	190.0	66.0	256.0	0.0	.	33	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33241961	33241961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PDS5B	NM_015032	exon7	c.A685G	p.I229V	CAAGCTATTGAGC	.	225.0	163.0	346.0	0.0	.	141	.	.	Atlas-SNP
NHLRC3	387921	hgsc.bcm.edu	hg19	13	39621235	39621235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	NHLRC3	NM_001012754	exon6	c.A737T	p.E246V	CTGGGGAGTGGTT	.	69.0	54.0	85.0	0.0	.	35	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56079290	56079290	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	KTN1	NM_001079521	exon2	c.523+1G>A	.	GAAGCGGTATTGT	.	176.0	98.0	155.0	0.0	.	147	.	.	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	hg19	15	29428590	29428590	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FAM189A1	NM_015307	exon7	c.G906A	p.V302V	CTGGCCCACCACC	.	25.0	8.0	36.0	0.0	.	20	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34065806	34065806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	RYR3	NM_001243996	exon64	c.T9127C	p.Y3043H	AACATTTATGTTG	.	51.0	18.0	46.0	0.0	.	760	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	hg19	15	40914304	40914304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CASC5	NM_170589	exon11	c.A1920C	p.E640D	TGAAGAAATTACC	.	80.0	29.0	107.0	0.0	.	269	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54305560	54305560	+	Silent	SNP	A	A	C	rs201347376	alternate_allele	TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	UNC13C	NM_001080534	exon1	c.A460C	p.R154R	CGCAACAGAAAGA	.	107.0	33.0	120.0	0.0	.	674	.	.	Atlas-SNP
MYO1E	4643	hgsc.bcm.edu	hg19	15	59445837	59445837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	MYO1E	NM_004998	exon26	c.C3032T	p.T1011M	TCTGGCGTCTGTG	.	79.0	24.0	95.0	0.0	.	99	.	.	Atlas-SNP
LMAN1L	79748	hgsc.bcm.edu	hg19	15	75113449	75113449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	LMAN1L	NM_021819	exon9	c.G941C	p.G314A	CGCTGGGCAGACA	.	229.0	86.0	348.0	0.0	.	43	.	.	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	hg19	15	78732183	78732183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	IREB2	NM_004136	exon2	c.T66G	p.H22Q	TTCACATAAGAAG	.	27.0	7.0	55.0	0.0	.	106	.	.	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	hg19	15	84639291	84639291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ADAMTSL3	NM_207517	exon20	c.T2546A	p.L849Q	AAAGGCTGGCAGC	.	80.0	17.0	74.0	0.0	.	290	.	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61689556	61689556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CDH8	NM_001796	exon11	c.C1724A	p.P575Q	ATGATTGGTAAAA	.	136.0	90.0	145.0	0.0	.	273	.	.	Atlas-SNP
ATXN1L	342371	hgsc.bcm.edu	hg19	16	71885144	71885144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ATXN1L	NM_001137675	exon3	c.G1501A	p.G501R	GTGAGCGGGGGGC	.	61.0	39.0	78.0	0.0	.	18	.	.	Atlas-SNP
CDH13	1012	hgsc.bcm.edu	hg19	16	83636063	83636063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CDH13	NM_001220488	exon9	c.T1106C	p.L369P	AGACTCTGGAAAA	.	76.0	28.0	91.0	0.0	.	97	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84229176	84229176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ADAD2	NM_139174	exon7	c.C1171T	p.P391S	GGGGGCCCCAAGG	.	83.0	63.0	101.0	0.0	.	46	.	.	Atlas-SNP
PMP22	5376	hgsc.bcm.edu	hg19	17	15134247	15134247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PMP22	NM_153322	exon4	c.G470A	p.R157Q	CGTTTCCGCAAGA	.	123.0	49.0	94.0	0.0	.	18	.	.	Atlas-SNP
TBC1D26	353149	hgsc.bcm.edu	hg19	17	15638739	15638739	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TBC1D26	NM_178571	exon3	c.75+2T>A	.	AGCAGGTACAAGT	.	226.0	82.0	243.0	0.0	.	16	.	.	Atlas-SNP
TMEM98	26022	hgsc.bcm.edu	hg19	17	31258571	31258571	+	Missense_Mutation	SNP	A	A	G	rs142287076		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TMEM98	NM_001033504	exon2	c.A25G	p.I9V	GTTGCCATAGGTG	.	61.0	20.0	44.0	0.0	.	23	.	A|1.000;G|0.000	Atlas-SNP
SLFN11	91607	hgsc.bcm.edu	hg19	17	33679831	33679831	+	Silent	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SLFN11	NM_152270	exon5	c.T2250C	p.S750S	AGGATTACTTCTA	.	112.0	49.0	68.0	0.0	.	112	.	.	Atlas-SNP
FAM171A2	284069	hgsc.bcm.edu	hg19	17	42432445	42432445	+	Silent	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FAM171A2	NM_198475	exon8	c.G1137T	p.G379G	GGGTCCCCCACAG	.	182.0	37.0	169.0	0.0	.	13	.	.	Atlas-SNP
SRSF1	6426	hgsc.bcm.edu	hg19	17	56082903	56082903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SRSF1	NM_006924	exon4	c.G611A	p.R204K	CGAGATCTTCCAT	.	142.0	24.0	143.0	0.0	.	41	.	.	Atlas-SNP
CELF4	56853	hgsc.bcm.edu	hg19	18	34855176	34855176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CELF4	NM_001025087	exon4	c.A479G	p.N160S	TGCTTGTTGAGCA	.	154.0	127.0	181.0	0.0	.	90	.	.	Atlas-SNP
DENND1C	79958	hgsc.bcm.edu	hg19	19	6475892	6475892	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	DENND1C	NM_024898	exon11	c.C735T	p.H245H	CAGCACGTGCTCC	.	67.0	30.0	89.0	0.0	.	93	.	.	Atlas-SNP
ARMC6	93436	hgsc.bcm.edu	hg19	19	19162935	19162935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ARMC6	NM_001199196	exon5	c.G784A	p.A262T	GGCCATGCCCACA	.	37.0	18.0	40.0	0.0	.	56	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42880376	42880376	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	MEGF8	NM_001271938	exon42	c.C7987G	p.L2663V	CTCTTCCTCTCAC	.	93.0	22.0	108.0	0.0	.	358	.	.	Atlas-SNP
NSFL1C	55968	hgsc.bcm.edu	hg19	20	1447368	1447368	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	NSFL1C	NM_016143	exon1	c.G102A	p.L34L	TACCTGCAAGTCC	.	155.0	75.0	101.0	0.0	.	38	.	.	Atlas-SNP
THBD	7056	hgsc.bcm.edu	hg19	20	23029882	23029882	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	THBD	NM_000361	exon1	c.G260A	p.W87X	CCGATCCAGAGGC	.	199.0	39.0	138.0	0.0	.	26	.	.	Atlas-SNP
ASXL1	171023	hgsc.bcm.edu	hg19	20	31016225	31016225	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ASXL1	NM_015338	exon5	c.G471A	p.Q157Q	CTCACAGGTAAGG	.	159.0	13.0	116.0	0.0	.	1114	.	.	Atlas-SNP
B4GALT5	9334	hgsc.bcm.edu	hg19	20	48252994	48252994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	B4GALT5	NM_004776	exon9	c.A1022T	p.Y341F	AGAGCATACCTGT	.	130.0	47.0	117.0	0.0	.	40	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57769575	57769575	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	ZNF831	NM_178457	exon1	c.C3501T	p.P1167P	CAGTCCCCACAGC	.	119.0	36.0	98.0	0.0	.	287	.	.	Atlas-SNP
RBBP8NL	140893	hgsc.bcm.edu	hg19	20	60987760	60987760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	.	NM_080833	exon13	c.G1796A	p.G599E	TCAGGCCCCTCCC	.	43.0	18.0	27.0	0.0	.	.	.	.	Atlas-SNP
CLDN17	26285	hgsc.bcm.edu	hg19	21	31538490	31538490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CLDN17	NM_012131	exon1	c.A446G	p.Y149C	GGGTTGTAGAAAT	.	55.0	35.0	74.0	0.0	.	61	.	.	Atlas-SNP
TRAPPC10	7109	hgsc.bcm.edu	hg19	21	45507598	45507598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TRAPPC10	NM_003274	exon17	c.C2558T	p.A853V	AGGCCGCGCTCCG	.	22.0	12.0	45.0	0.0	.	109	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47666731	47666731	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	MCM3AP	NM_003906	exon21	c.A4360T	p.S1454C	GCCCACTGGCTCC	.	123.0	87.0	157.0	0.0	.	146	.	.	Atlas-SNP
C22orf29	79680	hgsc.bcm.edu	hg19	22	19839277	19839277	+	Missense_Mutation	SNP	G	G	A	rs144116940		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	C22orf29	NM_024627	exon3	c.C508T	p.L170F	AGAAGAGCTCGTA	.	92.0	32.0	69.0	0.0	.	23	.	G|1.000;A|0.000	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24583203	24583203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SUSD2	NM_019601	exon11	c.T1676C	p.V559A	ACAGGGTCTCCAT	.	43.0	23.0	44.0	0.0	.	68	.	.	Atlas-SNP
MN1	4330	hgsc.bcm.edu	hg19	22	28195917	28195917	+	Silent	SNP	G	G	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	MN1	NM_002430	exon1	c.C615G	p.G205G	CGGCAGGCCGTGG	.	112.0	6.0	74.0	0.0	.	122	.	.	Atlas-SNP
SEPT3	55964	hgsc.bcm.edu	hg19	22	42387581	42387581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	SEPT3	NM_019106	exon7	c.G674A	p.R225H	AGGTTCGCAAGGA	.	93.0	49.0	100.0	0.0	.	53	.	.	Atlas-SNP
CRELD2	79174	hgsc.bcm.edu	hg19	22	50316312	50316312	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	CRELD2	NM_001135101	exon7	c.C792T	p.G264G	CTGCGGCGAGTGT	.	56.0	11.0	82.0	0.0	.	57	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12736481	12736481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	FRMPD4	NM_014728	exon16	c.A3536G	p.K1179R	CTTCCAAGCTTCC	.	92.0	75.0	81.0	0.0	.	214	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20179839	20179839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	RPS6KA3	NM_004586	exon20	c.G1882T	p.E628X	ATATTTCCTCTGG	.	35.0	28.0	27.0	0.0	.	110	.	.	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	hg19	X	85403711	85403711	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	DACH2	NM_001139514	exon1	c.C87A	p.Y29X	CCTGTACTCGACT	.	152.0	129.0	114.0	0.0	.	263	.	.	Atlas-SNP
NAP1L3	4675	hgsc.bcm.edu	hg19	X	92928252	92928252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	NAP1L3	NM_004538	exon1	c.G52T	p.A18S	CTTCGGCAACCCC	.	99.0	83.0	76.0	0.0	.	81	.	.	Atlas-SNP
KDM5D	8284	hgsc.bcm.edu	hg19	Y	21871366	21871366	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	KDM5D	NM_001146705	exon21	c.A3006T	p.E1002D	CTTTTCTTCCCAG	.	70.0	30.0	36.0	0.0	.	40	.	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46875463	46875472	+	Frame_Shift_Del	DEL	GGCTGCCACA	GGCTGCCACA	-	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	GGCTGCCACA	GGCTGCCACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	COL18A1	NM_030582	exon1	c.18_27del	p.6_9del	.	.	43.0	29.0	73.0	0.0	.	129	.	.	Atlas-Indel,Pindel
BSN	8927	hgsc.bcm.edu	hg19	3	49700524	49700524	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	BSN	NM_003458	exon7	c.10932delA	p.E3644fs	.	.	34.0	13.0	41.0	0.0	.	272	.	.	Atlas-Indel,Pindel
KRTAP5-4	387267	hgsc.bcm.edu	hg19	11	1643054	1643055	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	KRTAP5-4,NS,carcinoma,0,1	KRTAP5-4	NM_001012709	exon1	c.270_271insG	p.G90fs	.	.	267.0	22.0	269.0	0.0	.	78	.	.	Atlas-INDEL
TRIM13	10206	hgsc.bcm.edu	hg19	13	50588478	50588479	+	RNA	INS	-	-	TATAT	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	TRIM13	.	.	.	.	.	.	26.0	12.0	19.0	0.0	.	30	.	.	Atlas-INDEL
GRIK3	2899	hgsc.bcm.edu	hg19	1	37291402	37291403	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	GRIK3	NM_000831	exon11	c.1556_1557insC	p.L519fs	.	.	57.0	18.0	106.0	0.0	.	195	.	.	Atlas-Indel,Pindel
GGCX	2677	hgsc.bcm.edu	hg19	2	85779044	85779059	+	Frame_Shift_Del	DEL	GGATGTGCGCTGAAAG	GGATGTGCGCTGAAAG	-	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	GGATGTGCGCTGAAAG	GGATGTGCGCTGAAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	GGCX	NM_000821	exon11	c.1486_1501del	p.496_501del	.	.	76.0	22.0	99.0	0.0	.	44	.	.	Atlas-Indel,Pindel
COL18A1	80781	hgsc.bcm.edu	hg19	21	46888580	46888597	+	In_Frame_Del	DEL	CGTGGACTGTGAGGAGTT	CGTGGACTGTGAGGAGTT	-	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	CGTGGACTGTGAGGAGTT	CGTGGACTGTGAGGAGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	COL18A1	NM_030582	exon2	c.1070_1087del	p.357_363del	.	.	30.0	12.0	59.0	0.0	.	129	.	.	Atlas-Indel,Pindel
SPATA32	124783	hgsc.bcm.edu	hg19	17	43332844	43332845	+	Frame_Shift_Ins	INS	-	-	GGTGGCGGGAGATCTGAGGACAGGAGGGGGCTTGGTGCCT	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	.	NM_152343	exon4	c.705_706insAGGCACCAAGCCCCCTCCTGTCCTCAGATCTCCCGCCACC	p.P235fs	.	.	114.0	11.0	95.0	0.0	.	.	.	.	Pindel
PARG	8505	hgsc.bcm.edu	hg19	10	51370883	51370883	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A9FW-01A-11D-A36X-10	TCGA-CC-A9FW-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8da84d1c-a7dd-4e0f-82e8-abbcd33c5261	ffe29f46-9b5c-47f4-98bf-390f2183b420	.	PARG	NM_003631	exon1	c.189delA	p.G63fs	.	.	189.0	29.0	165.0	0.0	.	46	.	.	Pindel