Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TCEB3 6924 hgsc.bcm.edu hg19 1 24078287 24078287 + Missense_Mutation SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . TCEB3 NM_003198 exon4 c.G1270A p.D424N ATGGAGGATGAAT . 95.0 83.0 173.0 0.0 . 61 . . Atlas-SNP PDZK1IP1 10158 hgsc.bcm.edu hg19 1 47649702 47649702 + Nonsense_Mutation SNP C C A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . PDZK1IP1 NM_005764 exon4 c.G286T p.E96X CATTCTCATGCTC . 65.0 24.0 61.0 0.0 . 9 . . Atlas-SNP DMRTA2 63950 hgsc.bcm.edu hg19 1 50885040 50885040 + Nonsense_Mutation SNP G G T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . DMRTA2 NM_032110 exon3 c.C926A p.S309X GGACCCGAGCCTC . 32.0 13.0 18.0 0.0 . 17 . . Atlas-SNP DEPDC1 55635 hgsc.bcm.edu hg19 1 68947881 68947881 + Missense_Mutation SNP T T A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . DEPDC1 NM_001114120 exon8 c.A1610T p.N537I CCAACATTTGGTT . 145.0 63.0 78.0 0.0 . 102 . . Atlas-SNP SOX13 9580 hgsc.bcm.edu hg19 1 204095155 204095155 + Missense_Mutation SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . SOX13 NM_005686 exon14 c.G1762A p.D588N GGCACAGATGACA . 210.0 68.0 135.0 0.0 . 38 . . Atlas-SNP PLEKHA6 22874 hgsc.bcm.edu hg19 1 204198158 204198158 + Silent SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . PLEKHA6 NM_014935 exon19 c.C2658T p.G886G ATGCCCGCCAGGC . 128.0 43.0 75.0 0.0 . 115 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240256986 240256986 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . FMN2 NM_020066 exon1 c.C1577T p.A526V CTGGGGCCCCCGC . 40.0 10.0 15.0 0.0 . 451 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32724628 32724628 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . BIRC6 NM_016252 exon46 c.C8483T p.T2828I TCCAGACAGGCCA . 67.0 31.0 42.0 0.0 . 838 . . Atlas-SNP CYTIP 9595 hgsc.bcm.edu hg19 2 158300471 158300471 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . CYTIP NM_004288 exon1 c.G62A p.G21E GCTGGCCCAGCGC . 74.0 35.0 69.0 0.0 . 45 . . Atlas-SNP RBM45 129831 hgsc.bcm.edu hg19 2 178985043 178985043 + Missense_Mutation SNP A A T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . RBM45 NM_152945 exon4 c.A580T p.N194Y CCTAAAAATAAAG . 177.0 64.0 133.0 0.0 . 49 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179451970 179451970 + Missense_Mutation SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . TTN NM_001267550 exon307 c.C63968T p.T21323I AAGCTTGTTTTCT . 134.0 64.0 111.0 0.0 . 18412 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207437863 207437863 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . ADAM23 NM_003812 exon18 c.C1681T p.R561W GAATGCCGGGATG . 113.0 46.0 94.0 0.0 . 239 . . Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47129617 47129617 + Missense_Mutation SNP G G C novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . SETD2 NM_014159 exon10 c.C5263G p.L1755V GTTCCAGACAGGT . 81.0 22.0 55.0 0.0 . 721 . . Atlas-SNP EOGT 285203 hgsc.bcm.edu hg19 3 69028841 69028841 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . . NM_173654 exon13 c.G1060A p.D354N CCCAGTCTGGAAG . 110.0 70.0 108.0 0.0 . . . . Atlas-SNP TRMT10C 54931 hgsc.bcm.edu hg19 3 101284816 101284816 + Silent SNP A A G novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . . NM_017819 exon2 c.A1191G p.R397R CAACAGACTAAAG . 170.0 8.0 189.0 0.0 . . . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180334069 180334069 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . CCDC39 NM_181426 exon19 c.G2669A p.R890K GCTTACCTTGCTG . 91.0 41.0 91.0 0.0 . 242 . . Atlas-SNP GABRG1 2565 hgsc.bcm.edu hg19 4 46043146 46043146 + Missense_Mutation SNP A A C novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . GABRG1 NM_173536 exon9 c.T1257G p.F419L GTCTTCAAAGCAA . 198.0 8.0 146.0 0.0 . 172 . . Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76712648 76712648 + Missense_Mutation SNP C C A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . IMPG1 NM_001563 exon12 c.G1278T p.E426D ACCATGCTCTGCT . 143.0 63.0 105.0 0.0 . 143 . . Atlas-SNP SASH1 23328 hgsc.bcm.edu hg19 6 148846451 148846451 + Missense_Mutation SNP G G C novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . SASH1 NM_015278 exon11 c.G1234C p.D412H GGATTTGACTTGA . 65.0 22.0 57.0 0.0 . 123 . . Atlas-SNP ZNF703 80139 hgsc.bcm.edu hg19 8 37554679 37554679 + Missense_Mutation SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . ZNF703 NM_025069 exon2 c.G260A p.S87N AGAAGAGCCCCTT . 32.0 21.0 79.0 0.0 . 16 . . Atlas-SNP UBR5 51366 hgsc.bcm.edu hg19 8 103335715 103335715 + Missense_Mutation SNP C C G novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c UBR5,NS,carcinoma,0,1 UBR5 NM_015902 exon14 c.G1608C p.L536F ATTTCTCAAGCAT . 136.0 30.0 97.0 0.0 . 285 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113697726 113697726 + Silent SNP A A T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . CSMD3 NM_198123 exon15 c.T2391A p.P797P ATGGGAAGGCACC . 112.0 107.0 106.0 0.0 . 2325 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116426936 116426936 + Missense_Mutation SNP G G T rs78385846 bycluster TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . TRPS1 NM_014112 exon7 c.C3200A p.S1067Y GATACGGATGAAC . 141.0 128.0 106.0 0.0 . 516 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113170455 113170455 + Silent SNP A A G novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . SVEP1 NM_153366 exon38 c.T7425C p.N2475N GGTAGTATTTCCC . 67.0 54.0 77.0 0.0 . 326 . . Atlas-SNP TNC 3371 hgsc.bcm.edu hg19 9 117849523 117849523 + Missense_Mutation SNP C C T rs368041702 alternate_allele TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . TNC NM_002160 exon3 c.G487A p.G163S CCCGACCGCTACA . 162.0 75.0 132.0 0.0 . 282 . . Atlas-SNP LCN15 389812 hgsc.bcm.edu hg19 9 139656673 139656673 + Missense_Mutation SNP G G T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . LCN15 NM_203347 exon5 c.C487A p.P163T CCTTGGGGAGCCC . 186.0 77.0 154.0 0.0 . 11 . . Atlas-SNP VTI1A 143187 hgsc.bcm.edu hg19 10 114220309 114220309 + Missense_Mutation SNP G G T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . VTI1A NM_145206 exon2 c.G121T p.V41L GCAAATGTGGAGA . 471.0 132.0 528.0 1.0 . 15 . . Atlas-SNP VTI1A 143187 hgsc.bcm.edu hg19 10 114220314 114220314 + Missense_Mutation SNP G G T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . VTI1A NM_145206 exon2 c.G126T p.E42D TGTGGAGAAACAG . 454.0 111.0 538.0 1.0 . 15 . . Atlas-SNP VTI1A 143187 hgsc.bcm.edu hg19 10 114220315 114220315 + Nonsense_Mutation SNP A A T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . VTI1A NM_145206 exon2 c.A127T p.K43X GTGGAGAAACAGC . 451.0 112.0 536.0 1.0 . 15 . . Atlas-SNP SFXN4 119559 hgsc.bcm.edu hg19 10 120916266 120916266 + Silent SNP T T A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . SFXN4 NM_213649 exon10 c.A540T p.V180V AGGGATTACCTAG . 60.0 24.0 53.0 0.0 . 24 . . Atlas-SNP OR10A3 26496 hgsc.bcm.edu hg19 11 7960486 7960486 + Missense_Mutation SNP T T A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c OR10A3,NS,carcinoma,0,1 OR10A3 NM_001003745 exon1 c.A582T p.L194F TTCAAATAAGAAG . 175.0 47.0 173.0 0.0 . 54 . . Atlas-SNP OR4A16 81327 hgsc.bcm.edu hg19 11 55111591 55111591 + Silent SNP T T C novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . OR4A16 NM_001005274 exon1 c.T915C p.S305S GTTAAGTATAGTT . 24.0 8.0 40.0 0.0 . 120 . . Atlas-SNP C12orf57 113246 hgsc.bcm.edu hg19 12 7053299 7053299 + Silent SNP G G T rs144652065 alternate_allele TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . C12orf57 NM_138425 exon1 c.G15T p.S5S CGCCTCGACCCAA . 83.0 4.0 84.0 0.0 . 10 . G|1.000;A|0.000 Atlas-SNP SOX5 6660 hgsc.bcm.edu hg19 12 23793762 23793762 + Missense_Mutation SNP C C T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . SOX5 NM_006940 exon8 c.G1001A p.G334D AGTGGGCCTAAGC . 53.0 28.0 54.0 0.0 . 134 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26640009 26640009 + Missense_Mutation SNP C C A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . ITPR2 NM_002223 exon40 c.G5546T p.R1849L CTCATTCGTGGAC . 102.0 53.0 91.0 0.0 . 270 . . Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59266374 59266374 + Missense_Mutation SNP A A T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . LRIG3 NM_153377 exon19 c.T3340A p.S1114T CATAAGACTGAAA . 55.0 36.0 56.0 0.0 . 120 . . Atlas-SNP MYF5 4617 hgsc.bcm.edu hg19 12 81112793 81112793 + Missense_Mutation SNP G G C novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . MYF5 NM_005593 exon3 c.G731C p.G244A CTCCAGGGGCTTC . 56.0 33.0 67.0 0.0 . 78 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124341720 124341720 + Missense_Mutation SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c DNAH10_same_name,NS,carcinoma,0,2 DNAH10 NM_207437 exon36 c.G6202A p.V2068I CCTCGCGTCCGCT . 105.0 32.0 104.0 0.0 . 888 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28959141 28959141 + Missense_Mutation SNP T T A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . FLT1 NM_002019 exon14 c.A1997T p.N666I CTGAGGTTTCGCA . 68.0 59.0 119.0 0.0 . 393 . . Atlas-SNP OR4N2 390429 hgsc.bcm.edu hg19 14 20296476 20296476 + Missense_Mutation SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c OR4N2,NS,carcinoma,+1,2 OR4N2 NM_001004723 exon1 c.G869A p.R290H CCCTTCGCAACCA . 99.0 4.0 93.0 1.0 . 125 . . Atlas-SNP C14orf166 51637 hgsc.bcm.edu hg19 14 52458049 52458049 + Missense_Mutation SNP A A G novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . C14orf166 NM_016039 exon2 c.A76G p.R26G GAATTTAGAAACT . 278.0 166.0 277.0 0.0 . 23 . . Atlas-SNP ZSCAN29 146050 hgsc.bcm.edu hg19 15 43661977 43661977 + Silent SNP C C A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c ZSCAN29,NS,carcinoma,0,1 ZSCAN29 NM_152455 exon1 c.G135T p.R45R TAGCCACCGACAG . 65.0 21.0 66.0 0.0 . 57 . . Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 360070 360070 + Splice_Site SNP C C A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . AXIN1 NM_181050 exon5 c.1020-1G>T . CCATCCCTGTCCA . 56.0 46.0 85.0 0.0 . 290 . . Atlas-SNP MAP2K3 5606 hgsc.bcm.edu hg19 17 21203869 21203869 + Missense_Mutation SNP G G C novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . MAP2K3 NM_145109 exon4 c.G178C p.E60Q GAGGTGGAGGCTG . 120.0 31.0 117.0 0.0 . 135 . . Atlas-SNP PIGS 94005 hgsc.bcm.edu hg19 17 26885512 26885512 + Missense_Mutation SNP G G A rs201018217 alternate_allele TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . PIGS NM_033198 exon8 c.C916T p.P306S CCACTGGGTTGAT . 72.0 47.0 85.0 0.0 . 42 . G|0.999;C|0.001 Atlas-SNP MEOX1 4222 hgsc.bcm.edu hg19 17 41738601 41738601 + Missense_Mutation SNP G G A rs183202008 bycluster;by1000genomes;alternate_allele TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . MEOX1 NM_004527 exon1 c.C302T p.A101V CGCCGGGCGTCTG . 89.0 21.0 125.0 0.0 . 29 . G|0.999;T|0.001 Atlas-SNP PNMAL2 57469 hgsc.bcm.edu hg19 19 46997793 46997793 + Silent SNP G G A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . PNMAL2 NM_020709 exon1 c.C930T p.D310D CGAAGTGTCGCTG . 154.0 14.0 88.0 0.0 . 44 . . Atlas-SNP TTYH1 57348 hgsc.bcm.edu hg19 19 54930426 54930426 + Missense_Mutation SNP C C G novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . TTYH1 NM_020659 exon2 c.C251G p.S84W TCCCCTCGCCCGG . 75.0 64.0 36.0 0.0 . 78 . . Atlas-SNP TIAM1 7074 hgsc.bcm.edu hg19 21 32595765 32595765 + Missense_Mutation SNP A A T novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . TIAM1 NM_003253 exon9 c.T1952A p.M651K CGGCCCATGGCCA . 96.0 4.0 92.0 0.0 . 522 . . Atlas-SNP DGCR14 8220 hgsc.bcm.edu hg19 22 19124915 19124915 + Missense_Mutation SNP C C A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . DGCR14 NM_022719 exon8 c.G956T p.G319V ACCTCCCCCCAGG . 82.0 35.0 88.0 0.0 . 43 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190068224 190068228 + Frame_Shift_Del DEL AGAGA AGAGA - novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 AGAGA AGAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . FAM5C NM_199051 exon8 c.1222_1226del p.408_409del . . 298.0 66.0 175.0 0.0 . 343 . . Atlas-Indel,Pindel REXO1 57455 hgsc.bcm.edu hg19 19 1827911 1827912 + Frame_Shift_Ins INS - - CTCAT novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . REXO1 NM_020695 exon2 c.877_878insATGAG p.A293fs . . 62.0 46.0 63.0 0.0 . 55 . . Atlas-Indel,Pindel LPA 4018 hgsc.bcm.edu hg19 6 160953610 160953611 + Frame_Shift_Ins INS - - A novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . LPA NM_005577 exon39 c.5914_5915insT p.K1972_Y1973delinsX . . 46.0 18.0 32.0 0.0 . 237 . . Atlas-Indel,Pindel BRSK1 84446 hgsc.bcm.edu hg19 19 55815479 55815480 + Splice_Site INS - - TAA novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . BRSK1 NM_032430 exon13 c.1347+1->TAA . . . 86.0 17.0 53.0 0.0 . 192 . . Atlas-Indel,Pindel DSPP 1834 hgsc.bcm.edu hg19 4 88536956 88536973 + In_Frame_Del DEL AGCAGTGACAGCAGTGAC AGCAGTGACAGCAGTGAC - novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 AGCAGTGACAGCAGTGAC AGCAGTGACAGCAGTGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . DSPP NM_014208 exon5 c.3141_3158del p.1047_1053del . . 172.0 10.0 204.0 0.0 . 174 . . Pindel VTI1A 143187 hgsc.bcm.edu hg19 10 114220309 114220315 + Frame_Shift_Del DEL GTGGAGA GTGGAGA - novel TCGA-CC-A9FU-01A-11D-A36X-10 TCGA-CC-A9FU-10A-01D-A370-10 GTGGAGA GTGGAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07019fc1-db55-4a50-806c-4e370020cf28 b19b1b61-ed1e-48d0-a04b-759095dacf7c . VTI1A NM_145206 exon2 c.120_126del p.40_42del . . 480.0 87.0 533.0 0.0 . 15 . . Pindel