Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KLHL21	9903	hgsc.bcm.edu	hg19	1	6661948	6661948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	KLHL21	NM_014851	exon1	c.G930T	p.Q310H	ACCCGTCTGCGGG	.	113.0	31.0	135.0	0.0	.	27	.	.	Atlas-SNP
SLC2A7	155184	hgsc.bcm.edu	hg19	1	9078428	9078428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC2A7	NM_207420	exon5	c.C443G	p.S148C	CTGTAGGAGATGC	.	84.0	14.0	87.0	0.0	.	56	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16256548	16256548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SPEN	NM_015001	exon11	c.A3813C	p.E1271D	CCATGAAGATGAG	.	81.0	22.0	126.0	0.0	.	374	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43896050	43896050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SZT2	NM_015284	exon30	c.G4299A	p.M1433I	GCTTATGGGAGAA	.	47.0	16.0	72.0	0.0	.	383	.	.	Atlas-SNP
DNAJC6	9829	hgsc.bcm.edu	hg19	1	65874377	65874377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAJC6	NM_001256864	exon17	c.A2545T	p.N849Y	GGTTTCAATGCTC	.	260.0	71.0	361.0	0.0	.	104	.	.	Atlas-SNP
BNIPL	149428	hgsc.bcm.edu	hg19	1	151015463	151015463	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BNIPL	NM_138278	exon5	c.C465A	p.T155T	GGGCACCAGTGAG	.	105.0	22.0	178.0	0.0	.	45	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152276077	152276077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FLG	NM_002016	exon3	c.C11285A	p.P3762Q	GACCCCGGGTGTC	.	96.0	25.0	121.0	0.0	.	900	.	.	Atlas-SNP
CRTC2	200186	hgsc.bcm.edu	hg19	1	153920605	153920605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CRTC2	NM_181715	exon14	c.C2062A	p.R688S	CACTGCGGAATGA	.	77.0	14.0	150.0	0.0	.	58	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197072361	197072361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ASPM	NM_018136	exon18	c.A6020C	p.Y2007S	ATACTGTAAGCCC	.	56.0	11.0	67.0	0.0	.	444	.	.	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	hg19	1	197404289	197404289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CRB1	NM_201253	exon9	c.C3296A	p.T1099K	TAAGTACAATAGA	.	55.0	14.0	66.0	0.0	.	284	.	.	Atlas-SNP
TP53BP2	7159	hgsc.bcm.edu	hg19	1	223983912	223983912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TP53BP2	NM_001031685	exon13	c.C2329G	p.P777A	TGGATGGGTATGA	.	69.0	6.0	99.0	0.0	.	144	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228474027	228474027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	OBSCN_ENST00000570156,NS,carcinoma,0,4	OBSCN	NM_001271223	exon39	c.G10540T	p.A3514S	CAGCGGGCCTCGG	.	46.0	15.0	65.0	0.0	.	2142	.	.	Atlas-SNP
IRF2BP2	359948	hgsc.bcm.edu	hg19	1	234743411	234743411	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IRF2BP2	NM_182972	exon2	c.C1236T	p.T412T	CGGTGTGGTCCGG	.	105.0	19.0	118.0	0.0	.	37	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247587376	247587376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NLRP3	NM_183395	exon3	c.C631A	p.P211T	TTTGACCCCGATG	.	130.0	24.0	175.0	0.0	.	286	.	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27456323	27456323	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CAD	NM_004341	exon20	c.T3135G	p.A1045A	CTCGGCTGAGAAC	.	54.0	7.0	66.0	0.0	.	199	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31596741	31596741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	XDH	NM_000379	exon16	c.C1684A	p.Q562K	TCACTTGGAAGAG	.	46.0	9.0	57.0	0.0	.	191	.	.	Atlas-SNP
ZFP36L2	678	hgsc.bcm.edu	hg19	2	43452474	43452474	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	ZFP36L2,NS,carcinoma,0,2	ZFP36L2	NM_006887	exon2	c.G469C	p.E157Q	ACAGCTCGGTCTT	.	30.0	7.0	45.0	0.0	.	56	.	.	Atlas-SNP
AHSA2	130872	hgsc.bcm.edu	hg19	2	61413791	61413791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AHSA2	NM_152392	exon6	c.T284A	p.L95Q	CTACTCTAGGGCA	.	84.0	22.0	118.0	0.0	.	26	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84775472	84775472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAH6	NM_001370	exon8	c.A1247T	p.Y416F	CCACTTATGGAGA	.	112.0	19.0	125.0	0.0	.	194	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99013018	99013018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CNGA3	NM_001298	exon8	c.A1385G	p.D462G	TCCCAGACAAGCT	.	106.0	17.0	102.0	0.0	.	118	.	.	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	hg19	2	102808473	102808473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IL1RL2	NM_003854	exon4	c.T382A	p.L128I	CCAAATTTATCAG	.	210.0	42.0	201.0	0.0	.	118	.	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	hg19	2	155098670	155098670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GALNT13	NM_052917	exon5	c.C439A	p.L147I	TATCTACTCTCAG	.	81.0	31.0	95.0	0.0	.	170	.	.	Atlas-SNP
ALS2CR12	130540	hgsc.bcm.edu	hg19	2	202211384	202211384	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ALS2CR12	NM_001127391	exon5	c.G249T	p.V83V	AGGTGACACGTTG	.	46.0	11.0	63.0	0.0	.	54	.	.	Atlas-SNP
LRRC3B	116135	hgsc.bcm.edu	hg19	3	26751375	26751375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRC3B	NM_052953	exon2	c.T212A	p.L71Q	TGTATCTGGACTC	.	69.0	19.0	89.0	0.0	.	51	.	.	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	hg19	3	38938564	38938564	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCN11A	NM_014139	exon14	c.T2175A	p.R725R	GAAGCTACGGCCA	.	94.0	46.0	194.0	0.0	.	296	.	.	Atlas-SNP
CHDH	55349	hgsc.bcm.edu	hg19	3	53851839	53851839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CHDH	NM_018397	exon9	c.G1750A	p.V584I	TGTAGACAGGGAC	.	55.0	16.0	46.0	0.0	.	34	.	.	Atlas-SNP
IQCB1	9657	hgsc.bcm.edu	hg19	3	121514404	121514404	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IQCB1	NM_001023570	exon10	c.C886T	p.Q296X	CTGCTTGATGTAG	.	212.0	14.0	231.0	0.0	.	50	.	.	Atlas-SNP
PPP2R3A	5523	hgsc.bcm.edu	hg19	3	135721147	135721147	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PPP2R3A	NM_002718	exon2	c.T807C	p.D269D	TAATGATACAATT	.	120.0	25.0	118.0	0.0	.	114	.	.	Atlas-SNP
SSR3	6747	hgsc.bcm.edu	hg19	3	156271447	156271447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SSR3	NM_007107	exon2	c.A257C	p.H86P	TACTTGTGCTTGA	.	99.0	21.0	135.0	0.0	.	17	.	.	Atlas-SNP
TP63	8626	hgsc.bcm.edu	hg19	3	189590736	189590736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TP63	NM_001114979	exon10	c.C1301T	p.T434M	TTGAAACGTACAG	.	297.0	117.0	288.0	0.0	.	187	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193025125	193025125	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	ATP13A5,NS,neuroblastoma,0,1	ATP13A5	NM_198505	exon22	c.C2559T	p.N853N	ACAGTCGTTAGCT	.	114.0	38.0	91.0	0.0	.	171	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22425952	22425952	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPR125	NM_145290	exon11	c.T1467C	p.I489I	ACTTGCAATGTCA	.	172.0	100.0	182.0	0.0	.	118	.	.	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	hg19	4	47525056	47525056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ATP10D	NM_020453	exon4	c.C513G	p.C171W	CCGATGCTGGAAA	.	77.0	20.0	136.0	0.0	.	168	.	.	Atlas-SNP
RNF150	57484	hgsc.bcm.edu	hg19	4	141888999	141888999	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	RNF150	NM_020724	exon2	c.T513C	p.I171I	CTCAGGAATCATT	.	49.0	25.0	88.0	0.0	.	94	.	.	Atlas-SNP
ASB5	140458	hgsc.bcm.edu	hg19	4	177146466	177146466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ASB5	NM_080874	exon2	c.C223T	p.H75Y	CTTCATGTAGTGG	.	109.0	47.0	174.0	0.0	.	88	.	.	Atlas-SNP
CLPTM1L	81037	hgsc.bcm.edu	hg19	5	1330438	1330438	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CLPTM1L	NM_030782	exon9	c.G1037C	p.S346T	AGCAGGCTCGTCT	.	166.0	9.0	221.0	0.0	.	60	.	.	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73069858	73069858	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	.	NM_001080479	exon5	c.C654A	p.V218V	AGACGTCACAAAG	.	65.0	17.0	81.0	0.0	.	.	.	.	Atlas-SNP
BRD8	10902	hgsc.bcm.edu	hg19	5	137485482	137485482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BRD8	NM_139199	exon23	c.A3125G	p.E1042G	TGAGCCTCCCCCT	.	72.0	5.0	93.0	0.0	.	192	.	.	Atlas-SNP
DCDC2	51473	hgsc.bcm.edu	hg19	6	24278324	24278324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DCDC2	NM_001195610	exon8	c.A875T	p.K292I	TTTTGTTTCAATT	.	71.0	13.0	112.0	0.0	.	53	.	.	Atlas-SNP
SLC17A1	6568	hgsc.bcm.edu	hg19	6	25799088	25799088	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC17A1	NM_005074	exon12	c.C1329G	p.G443G	AATTAGGCCAGTC	.	36.0	13.0	61.0	0.0	.	71	.	.	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	hg19	6	26104441	26104441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	HIST1H4C	NM_003542	exon1	c.A266G	p.Y89C	TAGTATATGCCCT	.	83.0	16.0	79.0	0.0	.	14	.	.	Atlas-SNP
BTN2A1	11120	hgsc.bcm.edu	hg19	6	26468554	26468554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BTN2A1	NM_007049	exon8	c.T1361A	p.L454Q	TCTTCCTGGACTA	.	121.0	24.0	132.0	0.0	.	118	.	.	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	hg19	6	28227197	28227197	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NKAPL	NM_001007531	exon1	c.T48C	p.S16S	GGGCTCTCGGAGA	.	98.0	19.0	91.0	0.0	.	72	.	.	Atlas-SNP
BAG6	7917	hgsc.bcm.edu	hg19	6	31608213	31608213	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BAG6	NM_004639	exon22	c.A2997G	p.E999E	ATCCTGTTCATCC	.	68.0	11.0	82.0	0.0	.	73	.	.	Atlas-SNP
MSH5	4439	hgsc.bcm.edu	hg19	6	31726650	31726650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MSH5	NM_025259	exon15	c.C1375G	p.L459V	ATCCCTCTGGTGA	.	93.0	22.0	128.0	0.0	.	108	.	.	Atlas-SNP
CYP39A1	51302	hgsc.bcm.edu	hg19	6	46609971	46609971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CYP39A1	NM_016593	exon2	c.G242A	p.G81E	TTAATTCCTTCTT	.	48.0	4.0	79.0	0.0	.	41	.	.	Atlas-SNP
RHAG	6005	hgsc.bcm.edu	hg19	6	49583450	49583450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	RHAG,NS,carcinoma,+1,1	RHAG	NM_000324	exon4	c.C527A	p.A176D	CCAAAGGCATGGA	.	108.0	20.0	109.0	0.0	.	85	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65622636	65622636	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	EYS	NM_001142800	exon16	c.A2382T	p.R794R	CTCACATCTGAAA	.	48.0	5.0	50.0	0.0	.	527	.	.	Atlas-SNP
MTO1	25821	hgsc.bcm.edu	hg19	6	74202034	74202034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MTO1	NM_001123226	exon11	c.A1835G	p.Y612C	AGAAGTATACTAA	.	68.0	21.0	58.0	0.0	.	59	.	.	Atlas-SNP
FUT9	10690	hgsc.bcm.edu	hg19	6	96651384	96651384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FUT9	NM_006581	exon3	c.C353A	p.T118K	ATCTGACAAATTT	.	96.0	17.0	106.0	0.0	.	79	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106969168	106969168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AIM1	NM_001624	exon2	c.T2861C	p.L954P	CAAAACTGAAGAA	.	111.0	45.0	99.0	0.0	.	161	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117128020	117128020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	GPRC6A,NS,carcinoma,0,1	GPRC6A	NM_148963	exon3	c.T848A	p.V283D	TCAAAAACATGGA	.	47.0	12.0	45.0	0.0	.	152	.	.	Atlas-SNP
FBXO30	84085	hgsc.bcm.edu	hg19	6	146127013	146127013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FBXO30	NM_032145	exon2	c.G529C	p.E177Q	AAGATTCTTCATC	.	63.0	21.0	55.0	0.0	.	56	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12666242	12666242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCIN	NM_001112706	exon8	c.A1015C	p.I339L	ACACCAATCTTCA	.	78.0	51.0	82.0	0.0	.	105	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	hg19	7	36435972	36435972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ANLN	NM_018685	exon2	c.G116T	p.R39L	CTAAGCGAGCTAG	.	163.0	33.0	165.0	0.0	.	101	.	.	Atlas-SNP
CD36	948	hgsc.bcm.edu	hg19	7	80295781	80295781	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CD36	NM_001127444	exon6	c.C724G	p.H242D	GAAAGTCACTGCG	.	33.0	13.0	36.0	0.0	.	185	.	.	Atlas-SNP
SMURF1	57154	hgsc.bcm.edu	hg19	7	98645348	98645348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SMURF1	NM_020429	exon11	c.G1189T	p.G397C	AATGACCAGCTTG	.	77.0	20.0	71.0	0.0	.	58	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100677761	100677761	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MUC17	NM_001040105	exon3	c.T3064A	p.S1022T	GCCAGTTCACCTC	.	197.0	34.0	205.0	0.0	.	804	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	104377307	104377307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LHFPL3	NM_199000	exon2	c.G631C	p.G211R	GTGCTTGGTAATC	.	65.0	16.0	73.0	0.0	.	24	.	.	Atlas-SNP
PNPLA8	50640	hgsc.bcm.edu	hg19	7	108113028	108113028	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PNPLA8	NM_001256008	exon10	c.T2166C	p.S722S	ATTTCGACTTTCA	.	97.0	15.0	84.0	0.0	.	82	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128485033	128485033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FLNC	NM_001127487	exon21	c.G3514A	p.E1172K	GTCGGTGAGGCAG	.	97.0	22.0	82.0	0.0	.	339	.	.	Atlas-SNP
ABP1	26	hgsc.bcm.edu	hg19	7	150554178	150554178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ABP1	NM_001091	exon2	c.T620C	p.V207A	GCTATGTAGAAGG	.	32.0	8.0	34.0	0.0	.	92	.	.	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	hg19	7	157155965	157155965	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAJB6	NM_005494	exon3	c.175+1G>T	.	CGGATGGTGAGTG	.	61.0	14.0	81.0	0.0	.	39	.	.	Atlas-SNP
MFHAS1	9258	hgsc.bcm.edu	hg19	8	8748999	8748999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	MFHAS1,NS,carcinoma,0,1	MFHAS1	NM_004225	exon1	c.G1570A	p.G524R	TCGCCCCGACCCG	.	49.0	2.0	68.0	0.0	.	58	.	.	Atlas-SNP
ZDHHC2	51201	hgsc.bcm.edu	hg19	8	17072756	17072756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZDHHC2	NM_016353	exon11	c.C961T	p.H321Y	GAAAACCATCAGT	.	59.0	30.0	86.0	0.0	.	25	.	.	Atlas-SNP
CHMP4C	92421	hgsc.bcm.edu	hg19	8	82670408	82670408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CHMP4C	NM_152284	exon4	c.A515T	p.E172V	AATTGGAACAGGA	.	94.0	18.0	72.0	0.0	.	28	.	.	Atlas-SNP
LRRCC1	85444	hgsc.bcm.edu	hg19	8	86041583	86041583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRCC1	NM_033402	exon10	c.A1595G	p.E532G	AAATGGAGAGACA	.	289.0	105.0	291.0	0.0	.	212	.	.	Atlas-SNP
LRRC69	100130742	hgsc.bcm.edu	hg19	8	92213018	92213018	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRC69	NM_001129890	exon7	c.A931T	p.K311X	CCACCAAAGGTAA	.	116.0	46.0	125.0	0.0	.	24	.	.	Atlas-SNP
FBXO43	286151	hgsc.bcm.edu	hg19	8	101153047	101153047	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FBXO43	NM_001029860	exon2	c.C1435T	p.Q479X	TACACTGCAGTAC	.	105.0	24.0	128.0	0.0	.	155	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113326812	113326812	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CSMD3	NM_198123	exon48	c.T7395C	p.S2465S	TCCAGTAGAATCT	.	101.0	13.0	112.0	0.0	.	2325	.	.	Atlas-SNP
SNTB1	6641	hgsc.bcm.edu	hg19	8	121706115	121706115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SNTB1	NM_021021	exon2	c.A605G	p.K202R	CCTTTCTTCACAT	.	69.0	17.0	85.0	0.0	.	54	.	.	Atlas-SNP
FBXO32	114907	hgsc.bcm.edu	hg19	8	124553194	124553194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FBXO32	NM_001242463	exon1	c.G61A	p.G21S	TCCAGCCGTCGGC	.	95.0	29.0	78.0	0.0	.	39	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2039815	2039815	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SMARCA2	NM_139045	exon4	c.G705A	p.Q235Q	GCAGCAGCAACAG	.	219.0	10.0	43.0	0.0	.	313	.	.	Atlas-SNP
GLIS3	169792	hgsc.bcm.edu	hg19	9	4117860	4117860	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GLIS3	NM_001042413	exon4	c.G1618C	p.G540R	GGCAACCGGCCCA	.	262.0	232.0	69.0	0.0	.	152	.	.	Atlas-SNP
RANBP6	26953	hgsc.bcm.edu	hg19	9	6015579	6015579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	RANBP6,NS,carcinoma,0,1	RANBP6	NM_001243203	exon1	c.C29T	p.P10L	GTCGCCGGCACCC	.	61.0	56.0	14.0	0.0	.	127	.	.	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20944661	20944661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	.	NM_017794	exon31	c.C3443T	p.S1148F	TTCTGTCCCTCAT	.	56.0	12.0	75.0	0.0	.	.	.	.	Atlas-SNP
GNE	10020	hgsc.bcm.edu	hg19	9	36223377	36223377	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GNE	NM_001128227	exon8	c.G1497A	p.L499L	TACTCCCAAAATT	.	62.0	15.0	73.0	0.0	.	141	.	.	Atlas-SNP
ZNF510	22869	hgsc.bcm.edu	hg19	9	99525914	99525914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF510	NM_014930	exon4	c.G130A	p.A44T	CTGATGCCTGTAA	.	54.0	27.0	66.0	0.0	.	59	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107595004	107595004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ABCA1	NM_005502	exon12	c.G1360A	p.D454N	AGCCATCCAACTG	.	105.0	24.0	158.0	0.0	.	244	.	.	Atlas-SNP
DBC1	1620	hgsc.bcm.edu	hg19	9	121930349	121930349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DBC1	NM_014618	exon8	c.C1299G	p.N433K	GCTGTTGTTCCCG	.	36.0	13.0	45.0	0.0	.	194	.	.	Atlas-SNP
DBC1	1620	hgsc.bcm.edu	hg19	9	121976358	121976358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	DBC1,NS,carcinoma,0,1	DBC1	NM_014618	exon6	c.G761A	p.G254E	CCCTCCCCATTGC	.	70.0	40.0	110.0	0.0	.	194	.	.	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	hg19	9	135276847	135276847	+	Silent	SNP	C	C	T	rs61741946		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TTF1	NM_007344	exon2	c.G1362A	p.A454A	CCTTGGCGCCTCT	.	86.0	50.0	112.0	0.0	.	82	.	C|0.987;T|0.013	Atlas-SNP
FAM171A1	221061	hgsc.bcm.edu	hg19	10	15290660	15290660	+	Silent	SNP	C	C	A	rs151163427	byfrequency;alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FAM171A1	NM_001010924	exon5	c.G732T	p.A244A	CCGCCACGCCGCG	.	81.0	26.0	113.0	0.0	.	252	.	C|1.000;T|0.000	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26455035	26455035	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MYO3A	NM_017433	exon27	c.C3039G	p.R1013R	GCCCCGCATGAGC	.	46.0	19.0	81.0	0.0	.	371	.	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79569437	79569437	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DLG5	NM_004747	exon24	c.C4515T	p.I1505I	CTTTTTGATGAAG	.	207.0	55.0	240.0	0.0	.	154	.	.	Atlas-SNP
HECTD2	143279	hgsc.bcm.edu	hg19	10	93252211	93252211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	HECTD2	NM_182765	exon13	c.C1402G	p.L468V	CTTCTTCTAATTC	.	104.0	39.0	73.0	0.0	.	60	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6550235	6550235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNHD1	NM_144666	exon12	c.T2231A	p.V744E	ACTACGTGACGCT	.	81.0	14.0	95.0	0.0	.	198	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6644337	6644337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DCHS1	NM_003737	exon21	c.C8570A	p.P2857H	AAATAGGGGGAAG	.	44.0	17.0	35.0	0.0	.	277	.	.	Atlas-SNP
SLC6A5	9152	hgsc.bcm.edu	hg19	11	20622906	20622906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC6A5	NM_004211	exon2	c.T235A	p.S79T	GTGGGGTCTTGCA	.	15.0	7.0	25.0	0.0	.	151	.	.	Atlas-SNP
PAMR1	25891	hgsc.bcm.edu	hg19	11	35513688	35513688	+	Missense_Mutation	SNP	C	C	A	rs377041707	alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PAMR1	NM_001001991	exon3	c.G284T	p.R95L	CCATTTCGGCAGC	.	74.0	25.0	68.0	0.0	.	85	.	.	Atlas-SNP
OR4P4	81300	hgsc.bcm.edu	hg19	11	55405983	55405983	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	OR4P4	NM_001004124	exon1	c.C150A	p.T50T	GTGCACCCAGCTC	.	68.0	24.0	66.0	0.0	.	84	.	.	Atlas-SNP
CASP4	837	hgsc.bcm.edu	hg19	11	104819283	104819283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CASP4	NM_001225	exon6	c.T902C	p.I301T	AAAGCAATGAAGT	.	48.0	21.0	78.0	0.0	.	57	.	.	Atlas-SNP
CASP5	838	hgsc.bcm.edu	hg19	11	104872821	104872821	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CASP5	NM_001136112	exon5	c.G690T	p.V230V	CATCCCCACGATG	.	93.0	26.0	121.0	0.0	.	213	.	.	Atlas-SNP
PDZD3	79849	hgsc.bcm.edu	hg19	11	119059407	119059407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PDZD3	NM_001168468	exon9	c.G1118C	p.G373A	CCCGGGGCAGCAG	.	102.0	44.0	178.0	0.0	.	42	.	.	Atlas-SNP
GRIK4	2900	hgsc.bcm.edu	hg19	11	120811107	120811107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GRIK4	NM_014619	exon12	c.G1528T	p.V510L	GAGAAGGTGATTG	.	55.0	15.0	75.0	0.0	.	149	.	.	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1192448	1192448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ERC1	NM_178039	exon3	c.C788G	p.T263R	AGCTGACAGAGGA	.	107.0	13.0	76.0	0.0	.	95	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26752255	26752255	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ITPR2	NM_002223	exon30	c.G3825A	p.R1275R	GATGTGCCGCATG	.	84.0	14.0	87.0	0.0	.	270	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40740721	40740721	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRK2	NM_198578	exon42	c.A6276T	p.L2092F	AAAATTACCTGGT	.	42.0	17.0	43.0	0.0	.	763	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43769295	43769295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ADAMTS20	NM_025003	exon36	c.G5333A	p.C1778Y	AAAGGACATTGAT	.	83.0	23.0	94.0	0.0	.	635	.	.	Atlas-SNP
AMIGO2	347902	hgsc.bcm.edu	hg19	12	47471425	47471425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AMIGO2	NM_181847	exon2	c.C1361T	p.S454F	TCAGCGGAGGCAT	.	126.0	20.0	135.0	0.0	.	50	.	.	Atlas-SNP
DNAJC22	79962	hgsc.bcm.edu	hg19	12	49743205	49743205	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAJC22	NM_024902	exon2	c.C550G	p.R184G	CTCTATCGTCTGG	.	42.0	19.0	37.0	0.0	.	29	.	.	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	hg19	12	50869325	50869325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LARP4	NM_052879	exon16	c.G1853T	p.S618I	AGTTAAGTTATGC	.	82.0	14.0	103.0	0.0	.	58	.	.	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	hg19	12	52056683	52056683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCN8A	NM_014191	exon2	c.C82T	p.R28C	GAGAGGCGCATTG	.	80.0	20.0	94.0	0.0	.	331	.	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	hg19	12	54757483	54757483	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPR84	NM_020370	exon2	c.C153G	p.L51L	GGTACGGAGCTTG	.	66.0	23.0	68.0	0.0	.	38	.	.	Atlas-SNP
LACRT	90070	hgsc.bcm.edu	hg19	12	55024698	55024698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LACRT	NM_033277	exon5	c.G395A	p.S132N	AATAGACTGAATT	.	128.0	13.0	133.0	0.0	.	26	.	.	Atlas-SNP
HCFC2	29915	hgsc.bcm.edu	hg19	12	104480666	104480666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	HCFC2	NM_013320	exon8	c.A1105G	p.T369A	AAAGCCACTACCA	.	116.0	28.0	91.0	0.0	.	94	.	.	Atlas-SNP
MVK	4598	hgsc.bcm.edu	hg19	12	110032905	110032905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MVK	NM_000431	exon10	c.C958A	p.Q320K	CTCTGCCAGGTGA	.	51.0	7.0	73.0	0.0	.	42	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130015669	130015669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TMEM132D	NM_133448	exon3	c.T1050A	p.D350E	AGTATAATCCGTG	.	48.0	13.0	58.0	0.0	.	299	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132522532	132522532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	EP400	NM_015409	exon32	c.C6098A	p.P2033H	ATTCTCCCATGGA	.	90.0	4.0	123.0	0.0	.	370	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39422758	39422758	+	Silent	SNP	T	T	C	rs112083916	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FREM2	NM_207361	exon8	c.T6330C	p.L2110L	AGCCCTTGGCGAG	.	34.0	16.0	56.0	0.0	.	385	.	T|0.995;G|0.005	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42875560	42875560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AKAP11	NM_016248	exon8	c.C2678T	p.S893L	TGACATCATTGGA	.	54.0	26.0	69.0	0.0	.	146	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103388308	103388308	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	.	NM_001146197	exon4	c.C14739T	p.C4913C	TCCATTGCATAGA	.	22.0	8.0	40.0	0.0	.	.	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42356467	42356467	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRFN5	NM_152447	exon3	c.C639T	p.D213D	ACCTGACCCTCTC	.	57.0	28.0	91.0	0.0	.	269	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64491167	64491167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SYNE2	NM_182914	exon39	c.C5830G	p.Q1944E	TTGCAGCAGCTAC	.	44.0	9.0	30.0	0.0	.	577	.	.	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67647566	67647566	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPHN	NM_020806	exon23	c.G2222C	p.G741A	CCAATGGATTGTT	.	56.0	10.0	77.0	0.0	.	79	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102508727	102508727	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DYNC1H1	NM_001376	exon68	c.G12282A	p.V4094V	GTGGGTGATGCTG	.	57.0	14.0	50.0	0.0	.	395	.	.	Atlas-SNP
LCMT2	9836	hgsc.bcm.edu	hg19	15	43622597	43622597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LCMT2	NM_014793	exon1	c.G91A	p.G31R	CGTACCCGCGCGC	.	29.0	4.0	28.0	0.0	.	48	.	.	Atlas-SNP
SIN3A	25942	hgsc.bcm.edu	hg19	15	75705145	75705145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SIN3A	NM_001145358	exon5	c.G715A	p.A239T	GCTGGGCAGGAGC	.	87.0	44.0	82.0	0.0	.	152	.	.	Atlas-SNP
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11876180	11876180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZC3H7A	NM_014153	exon2	c.A31G	p.R11G	GCTGCCTTTTTCT	.	76.0	4.0	104.0	0.0	.	72	.	.	Atlas-SNP
GPRC5B	51704	hgsc.bcm.edu	hg19	16	19883202	19883202	+	Silent	SNP	C	C	T	rs199935784	by1000genomes;alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPRC5B	NM_016235	exon2	c.G966A	p.E322E	CACGTCCTCCTCG	.	42.0	19.0	62.0	0.0	.	54	.	C|1.000;G|0.000	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58589731	58589731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CNOT1	NM_206999	exon20	c.G2561T	p.R854L	TATATTCGCTGGA	.	26.0	13.0	31.0	0.0	.	359	.	.	Atlas-SNP
JPH3	57338	hgsc.bcm.edu	hg19	16	87723913	87723913	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	JPH3	NM_020655	exon4	c.C1947A	p.G649G	CCGGGGCTTCGGG	.	79.0	52.0	100.0	0.0	.	95	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	TP53_ENST00000545858,NS,carcinoma,+1,5	TP53	NM_000546	exon5	c.G469T	p.V157F	CGCGGACGCGGGT	.	63.0	39.0	75.0	0.0	.	33396	.	.	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	hg19	17	39622138	39622138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	KRT32	NM_002278	exon3	c.A595G	p.I199V	CATTGATGTCGGC	.	62.0	12.0	71.0	0.0	.	57	.	.	Atlas-SNP
LOC100653515	0	hgsc.bcm.edu	hg19	17	76887993	76887993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	.	NM_001243540	exon3	c.C593T	p.A198V	CTCGCTGCTGTCT	.	115.0	71.0	148.0	0.0	.	.	.	.	Atlas-SNP
CIDEA	1149	hgsc.bcm.edu	hg19	18	12277129	12277129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CIDEA	NM_001279	exon5	c.C520A	p.L174M	AGTCTGCTGCGGT	.	74.0	32.0	75.0	0.0	.	32	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19098035	19098035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GREB1L	NM_001142966	exon31	c.T5312A	p.I1771N	AATACATCTGTGC	.	104.0	48.0	105.0	0.0	.	69	.	.	Atlas-SNP
DSG2	1829	hgsc.bcm.edu	hg19	18	29126582	29126582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DSG2	NM_001943	exon15	c.G3233C	p.G1078A	TGTCTGGAGCTGG	.	103.0	15.0	95.0	0.0	.	115	.	.	Atlas-SNP
CTIF	9811	hgsc.bcm.edu	hg19	18	46287965	46287965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CTIF	NM_001142397	exon10	c.A1282G	p.S428G	GACCGCAGCTTCG	.	68.0	29.0	64.0	0.0	.	102	.	.	Atlas-SNP
SERPINB8	5271	hgsc.bcm.edu	hg19	18	61645627	61645627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SERPINB8	NM_001031848	exon2	c.T85C	p.F29L	AACGTATTCTTCT	.	66.0	6.0	58.0	0.0	.	42	.	.	Atlas-SNP
CLEC4M	10332	hgsc.bcm.edu	hg19	19	7830731	7830731	+	Missense_Mutation	SNP	G	G	A	rs76899402	bycluster	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	CLEC4M,colon,carcinoma,0,1	CLEC4M	NM_001144908	exon4	c.G422A	p.R141Q	TGACCCGGCTGAA	.	21.0	3.0	31.0	0.0	.	58	.	G|0.250;A|0.750	Atlas-SNP
OR7A17	26333	hgsc.bcm.edu	hg19	19	14991644	14991644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	OR7A17	NM_030901	exon1	c.C524T	p.P175L	AAGTGGGGGATTT	.	60.0	25.0	68.0	0.0	.	37	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15298796	15298796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NOTCH3	NM_000435	exon10	c.G1502T	p.G501V	GTGGAGCCGCTGA	.	82.0	38.0	98.0	0.0	.	340	.	.	Atlas-SNP
FXYD3	5349	hgsc.bcm.edu	hg19	19	35614352	35614352	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FXYD3	NM_001136007	exon11	c.C426T	p.A142A	CTCAGCCCAAAGC	.	57.0	10.0	82.0	0.0	.	15	.	.	Atlas-SNP
CEACAM8	1088	hgsc.bcm.edu	hg19	19	43098936	43098936	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CEACAM8	NM_001816	exon1	c.G45A	p.W15X	CCCCTGCCAGGGG	.	32.0	8.0	29.0	0.0	.	44	.	.	Atlas-SNP
FUT1	2523	hgsc.bcm.edu	hg19	19	49253562	49253562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FUT1	NM_000148	exon4	c.C977G	p.A326G	AAGTTGGCCAGGT	.	52.0	27.0	41.0	0.0	.	44	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SSC5D	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	79.0	8.0	90.0	0.0	.	65	.	.	Atlas-SNP
ZNF586	54807	hgsc.bcm.edu	hg19	19	58290133	58290133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF586	NM_017652	exon3	c.G178A	p.G60R	CATGGAGGGGAAG	.	38.0	7.0	28.0	0.0	.	31	.	.	Atlas-SNP
ZNF256	10172	hgsc.bcm.edu	hg19	19	58453067	58453067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF256	NM_005773	exon3	c.A1109G	p.Q370R	ACTCTCTGGTGTG	.	42.0	8.0	60.0	0.0	.	117	.	.	Atlas-SNP
ANGPT4	51378	hgsc.bcm.edu	hg19	20	869031	869031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ANGPT4	NM_015985	exon3	c.T517C	p.S173P	TGGTGGACAGAAA	.	22.0	10.0	34.0	0.0	.	77	.	.	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	hg19	20	13983050	13983050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MACROD2	NM_080676	exon2	c.G163A	p.E55K	AATGATGGTAAGT	.	85.0	45.0	97.0	0.0	.	34	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61522428	61522428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DIDO1	NM_080797	exon15	c.G3425A	p.S1142N	CCACGGCTGCTGA	.	76.0	16.0	114.0	0.0	.	321	.	.	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	hg19	20	62044867	62044867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	KCNQ2	NM_172107	exon15	c.G1699T	p.V567F	CGATGACGTCCAT	.	128.0	35.0	235.0	0.0	.	201	.	.	Atlas-SNP
CLDN17	26285	hgsc.bcm.edu	hg19	21	31538834	31538834	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	CLDN17,NS,carcinoma,0,1	CLDN17	NM_012131	exon1	c.T102G	p.A34A	AACAAAAGCTGAT	.	75.0	14.0	113.0	0.0	.	61	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38461097	38461097	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TTC3	NM_001001894	exon5	c.339-2A>T	.	TCTTTAAGCAATT	.	67.0	22.0	103.0	0.0	.	182	.	.	Atlas-SNP
PDE9A	5152	hgsc.bcm.edu	hg19	21	44108091	44108091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PDE9A	NM_001001570	exon3	c.G205A	p.A69T	ATGCCCGCGAATT	.	32.0	12.0	55.0	0.0	.	69	.	.	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	hg19	21	44845966	44845966	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SIK1	NM_173354	exon2	c.G93A	p.R31R	CAGGGTCCGCTCG	.	45.0	15.0	67.0	0.0	.	65	.	.	Atlas-SNP
XPNPEP3	63929	hgsc.bcm.edu	hg19	22	41318489	41318489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	XPNPEP3	NM_022098	exon8	c.A1208C	p.K403T	TCATGAAGAACAT	.	71.0	6.0	53.0	0.0	.	46	.	.	Atlas-SNP
MEI1	150365	hgsc.bcm.edu	hg19	22	42177763	42177763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MEI1	NM_152513	exon24	c.G3001A	p.A1001T	GCAAAGGCAGATT	.	132.0	77.0	109.0	0.0	.	87	.	.	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	hg19	22	43608598	43608598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCUBE1	NM_173050	exon17	c.G2054T	p.G685V	CACTGGCCTGAAA	.	37.0	13.0	44.0	0.0	.	105	.	.	Atlas-SNP
UPRT	139596	hgsc.bcm.edu	hg19	X	74494412	74494412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	UPRT	NM_145052	exon1	c.C323T	p.A108V	TCGGGGCGCAGCT	.	128.0	88.0	98.0	0.0	.	46	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2138085	2138088	+	Frame_Shift_Del	DEL	TCGT	TCGT	-	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	TCGT	TCGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TSC2	NM_000548	exon40	c.5104_5107del	p.1702_1703del	.	.	33.0	12.0	53.0	0.0	.	364	.	.	Atlas-Indel,Pindel
TTN	7273	hgsc.bcm.edu	hg19	2	179604561	179604561	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TTN	NM_001267550	exon48	c.13400delC	p.A4467fs	.	.	107.0	25.0	122.0	0.0	.	18412	.	.	Atlas-Indel,Pindel
TYMP	1890	hgsc.bcm.edu	hg19	22	50967719	50967743	+	Frame_Shift_Del	DEL	GTCTCCTCCAGATCCATGCCCCGAA	GTCTCCTCCAGATCCATGCCCCGAA	-	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	GTCTCCTCCAGATCCATGCCCCGAA	GTCTCCTCCAGATCCATGCCCCGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TYMP	NM_001113756	exon2	c.240_264del	p.80_88del	.	.	46.0	20.0	68.0	0.0	.	25	.	.	Atlas-Indel,Pindel