Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm AURKAIP1 54998 hgsc.bcm.edu hg19 1 1309214 1309214 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . AURKAIP1 NM_001127230 exon4 c.G567T p.W189C GGTCTGCCAGCCT . 15.0 13.0 7.0 0.0 . 12 . . Atlas-SNP SPOCD1 90853 hgsc.bcm.edu hg19 1 32256443 32256443 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SPOCD1 NM_144569 exon16 c.C3412T p.H1138Y GGAAGTGCTGGCC . 66.0 49.0 76.0 0.0 . 109 . . Atlas-SNP HOOK1 51361 hgsc.bcm.edu hg19 1 60324102 60324102 + Silent SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . HOOK1 NM_015888 exon13 c.A1245G p.R415R TCAGAGACTAATT . 206.0 167.0 251.0 0.0 . 54 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152277615 152277615 + Missense_Mutation SNP G G T rs146017726 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . FLG NM_002016 exon3 c.C9747A p.H3249Q GGAGCCGTGCCTT . 160.0 52.0 97.0 0.0 . 900 . G|0.997;A|0.003 Atlas-SNP KPRP 448834 hgsc.bcm.edu hg19 1 152733416 152733416 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . KPRP NM_001025231 exon2 c.G1352T p.R451L TTCCTCGCCCAGG . 52.0 48.0 32.0 0.0 . 152 . . Atlas-SNP ATP8B2 57198 hgsc.bcm.edu hg19 1 154320946 154320946 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 ATP8B2,bladder,carcinoma,0,1 ATP8B2 NM_020452 exon27 c.G3325A p.V1109I ACAGTCGTCTGCA . 113.0 94.0 75.0 0.0 . 158 . . Atlas-SNP RUSC1 23623 hgsc.bcm.edu hg19 1 155292170 155292170 + Silent SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . RUSC1 NM_001105203 exon2 c.G606A p.R202R CGAGAGGGCGGAG . 363.0 310.0 228.0 0.0 . 85 . . Atlas-SNP OR6Y1 391112 hgsc.bcm.edu hg19 1 158517456 158517456 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 OR6Y1,NS,carcinoma,0,1 OR6Y1 NM_001005189 exon1 c.G440C p.G147A AGTGTGCCACAGA . 91.0 83.0 72.0 0.0 . 73 . . Atlas-SNP C1orf111 284680 hgsc.bcm.edu hg19 1 162344018 162344018 + Silent SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . C1orf111 NM_182581 exon3 c.C606A p.I202I CCTCTTGATGTGG . 122.0 42.0 89.0 0.0 . 26 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220406172 220406172 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . RAB3GAP2 NM_012414 exon2 c.G149T p.G50V CATGCTCCCCAAC . 213.0 178.0 111.0 0.0 . 120 . . Atlas-SNP SNTG2 54221 hgsc.bcm.edu hg19 2 1241790 1241790 + Splice_Site SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SNTG2 NM_018968 exon10 c.849+1G>A . CAGAACGTGAGCA . 51.0 15.0 44.0 0.0 . 125 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21246408 21246408 + Nonsense_Mutation SNP C C A rs150005693 alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . APOB NM_000384 exon17 c.G2593T p.E865X CTACTTCCAGTTT . 101.0 64.0 76.0 0.0 . 761 . C|1.000;T|0.000 Atlas-SNP DPYSL5 56896 hgsc.bcm.edu hg19 2 27156187 27156187 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . DPYSL5 NM_001253724 exon7 c.C776G p.A259G TCGCAGCTGCTAA . 129.0 65.0 99.0 0.0 . 69 . . Atlas-SNP FEZ2 9637 hgsc.bcm.edu hg19 2 36808548 36808548 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . FEZ2 NM_001042548 exon4 c.G519A p.M173I TTCCTGCATCATT . 175.0 16.0 146.0 0.0 . 13 . . Atlas-SNP CNGA3 1261 hgsc.bcm.edu hg19 2 99013401 99013401 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CNGA3 NM_001298 exon8 c.G1768A p.E590K CTCACCGAGTACC . 53.0 17.0 57.0 0.0 . 118 . . Atlas-SNP SLC4A10 57282 hgsc.bcm.edu hg19 2 162719562 162719562 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC4A10 NM_001178016 exon7 c.G789T p.M263I TTCCATGGACAAA . 110.0 92.0 136.0 0.0 . 309 . . Atlas-SNP MYO3B 140469 hgsc.bcm.edu hg19 2 171092541 171092541 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MYO3B NM_001083615 exon7 c.C644A p.A215D ATGACGCTCGCTG . 78.0 17.0 77.0 0.0 . 320 . . Atlas-SNP CDCP1 64866 hgsc.bcm.edu hg19 3 45153829 45153829 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CDCP1 NM_178181 exon3 c.G401T p.S134I CCGATGCTCTTAT . 163.0 96.0 140.0 0.0 . 61 . . Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47043973 47043973 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 NBEAL2_ENST00000450053,NS,carcinoma,0,2 NBEAL2 NM_015175 exon32 c.G5264T p.R1755L AGCGGCGCCAGTG . 46.0 27.0 56.0 0.0 . 267 . . Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47155493 47155493 + Missense_Mutation SNP A A T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SETD2 NM_014159 exon5 c.T4588A p.S1530T GAGAAGAACTGAA . 166.0 12.0 116.0 0.0 . 721 . . Atlas-SNP ARL13B 200894 hgsc.bcm.edu hg19 3 93755396 93755396 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ARL13B NM_182896 exon5 c.G487A p.E163K TTTTAGGAACCAT . 361.0 37.0 282.0 0.0 . 52 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108203979 108203979 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MYH15 NM_014981 exon12 c.A1133G p.Q378R GGTTTCTGTTTAA . 70.0 29.0 65.0 0.0 . 223 . . Atlas-SNP SLC35A5 55032 hgsc.bcm.edu hg19 3 112300032 112300032 + Silent SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC35A5 NM_017945 exon6 c.C1068T p.S356S GCCCTCCCTGGAA . 136.0 44.0 118.0 0.0 . 40 . . Atlas-SNP CCDC80 151887 hgsc.bcm.edu hg19 3 112326103 112326103 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CCDC80 NM_199511 exon7 c.G2426A p.G809D CGCAGACCTGAGA . 129.0 19.0 85.0 0.0 . 100 . . Atlas-SNP KLF15 28999 hgsc.bcm.edu hg19 3 126062613 126062613 + Missense_Mutation SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . KLF15 NM_014079 exon3 c.A1208T p.H403L AAGCGGTGCACCT . 210.0 52.0 261.0 0.0 . 40 . . Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130103715 130103715 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . COL6A5 NM_153264 exon5 c.C1369A p.Q457K GAGAAACAGTTTG . 131.0 69.0 100.0 0.0 . 205 . . Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130103724 130103724 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . COL6A5 NM_153264 exon5 c.C1378G p.Q460E TTTGAGCAAATCA . 134.0 67.0 103.0 0.0 . 205 . . Atlas-SNP TSC22D2 9819 hgsc.bcm.edu hg19 3 150127752 150127752 + Silent SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TSC22D2 NM_014779 exon1 c.C615T p.S205S ACACAGCAGTACT . 111.0 26.0 101.0 0.0 . 42 . . Atlas-SNP WDR49 151790 hgsc.bcm.edu hg19 3 167277885 167277885 + Silent SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . WDR49 NM_178824 exon5 c.G618A p.R206R CAAAAGCCGAGTC . 138.0 35.0 94.0 0.0 . 188 . . Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184295208 184295208 + Silent SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . EPHB3 NM_004443 exon6 c.C1432A p.R478R CCAGAGCGGCCCA . 377.0 201.0 380.0 1.0 . 114 . . Atlas-SNP LMLN 89782 hgsc.bcm.edu hg19 3 197687166 197687166 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . LMLN NM_001136049 exon1 c.G74T p.G25V GCCCGGGCCGGAG . 114.0 33.0 92.0 0.0 . 53 . . Atlas-SNP ZFYVE28 57732 hgsc.bcm.edu hg19 4 2273119 2273119 + Silent SNP G G A rs146945400 TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 ZFYVE28,NS,carcinoma,0,1 ZFYVE28 NM_020972 exon12 c.C2451T p.D817D GGCCTCGTCTGGC . 120.0 29.0 93.0 0.0 . 79 . G|1.000;A|0.000 Atlas-SNP SORCS2 57537 hgsc.bcm.edu hg19 4 7705958 7705958 + Silent SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SORCS2 NM_020777 exon14 c.G1815T p.S605S CACCTCGGTGTTT . 85.0 25.0 60.0 0.0 . 98 . . Atlas-SNP CHRNA9 55584 hgsc.bcm.edu hg19 4 40351330 40351330 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CHRNA9 NM_017581 exon4 c.G797T p.G266V CCTCCGGAGAAAA . 252.0 138.0 208.0 0.0 . 53 . . Atlas-SNP PDGFRA 5156 hgsc.bcm.edu hg19 4 55156636 55156636 + Missense_Mutation SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PDGFRA NM_006206 exon22 c.A3037G p.S1013G AGACTGAGCGCTG . 186.0 24.0 126.0 0.0 . 1583 . . Atlas-SNP SLC9A3 6550 hgsc.bcm.edu hg19 5 475176 475176 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC9A3 NM_004174 exon16 c.C2323A p.L775M GAGACAGCCAGGG . 93.0 44.0 107.0 0.0 . 89 . . Atlas-SNP SLC6A3 6531 hgsc.bcm.edu hg19 5 1406399 1406399 + Silent SNP A A T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC6A3 NM_001044 exon12 c.T1503A p.V501V CTGCCCAACACCT . 86.0 27.0 87.0 0.0 . 102 . . Atlas-SNP ERBB2IP 55914 hgsc.bcm.edu hg19 5 65371047 65371047 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ERBB2IP NM_001253699 exon23 c.G3973T p.A1325S GAACTGGCAAAAC . 323.0 155.0 294.0 0.0 . 120 . . Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82816787 82816787 + Missense_Mutation SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . VCAN NM_004385 exon7 c.T2662A p.S888T ACTACATCAACTG . 114.0 52.0 84.0 0.0 . 498 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135561777 135561777 + Missense_Mutation SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TRPC7 NM_020389 exon9 c.A2207T p.K736M TTGGCCTTAGATT . 148.0 50.0 122.0 0.0 . 126 . . Atlas-SNP PCDHA3 56145 hgsc.bcm.edu hg19 5 140180920 140180920 + Silent SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCDHA3 NM_031497 exon1 c.C138A p.G46G CGTGGGCCGCATC . 51.0 16.0 58.0 0.0 . 396 . . Atlas-SNP PCDHA8 56140 hgsc.bcm.edu hg19 5 140222940 140222940 + Silent SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 PCDHA8_ENST00000531613,NS,carcinoma,0,2 PCDHA8 NM_031856 exon1 c.G2034A p.A678A AAAAGCGTCATCG . 95.0 55.0 83.0 0.0 . 366 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140573693 140573693 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCDHB10 NM_018930 exon1 c.C1568A p.A523D ACGAGGCCCTGCA . 62.0 21.0 53.0 0.0 . 177 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169081429 169081429 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . DOCK2 NM_004946 exon2 c.C66A p.S22R AGGCAGCGGAGCC . 50.0 16.0 51.0 0.0 . 389 . . Atlas-SNP F13A1 2162 hgsc.bcm.edu hg19 6 6248626 6248626 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . F13A1 NM_000129 exon6 c.C717A p.C239X ATACAGGCAAGTG . 60.0 24.0 35.0 0.0 . 135 . . Atlas-SNP MYLIP 29116 hgsc.bcm.edu hg19 6 16145305 16145305 + Silent SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MYLIP NM_013262 exon6 c.T1005A p.V335V TGGCGTTGTGGAC . 213.0 97.0 141.0 0.0 . 44 . . Atlas-SNP SLC17A1 6568 hgsc.bcm.edu hg19 6 25811666 25811666 + Silent SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC17A1 NM_005074 exon10 c.T1138C p.L380L CACCCAAGCAAAA . 395.0 26.0 250.0 0.0 . 71 . . Atlas-SNP SLC17A1 6568 hgsc.bcm.edu hg19 6 25811734 25811734 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC17A1 NM_005074 exon10 c.A1070G p.Y357C CTCAGGTAAGGCA . 278.0 41.0 185.0 0.0 . 71 . . Atlas-SNP DAAM2 23500 hgsc.bcm.edu hg19 6 39864686 39864686 + Missense_Mutation SNP C C A rs146966805 bycluster;by1000genomes;alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 DAAM2,caecum,carcinoma,0,1 DAAM2 NM_015345 exon20 c.C2440A p.R814S GGGCAGCGTGGGG . 89.0 42.0 63.0 0.0 . 101 . C|0.999;T|0.001 Atlas-SNP SLC29A1 2030 hgsc.bcm.edu hg19 6 44198616 44198616 + Silent SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC29A1 NM_004955 exon8 c.C756T p.L252L GGACCTCATTAGC . 94.0 53.0 75.0 0.0 . 45 . . Atlas-SNP ORC3 23595 hgsc.bcm.edu hg19 6 88374575 88374575 + Missense_Mutation SNP G G C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ORC3 NM_181837 exon18 c.G1951C p.E651Q TGGTCAGAGGTAG . 119.0 94.0 97.0 0.0 . 51 . . Atlas-SNP LACE1 246269 hgsc.bcm.edu hg19 6 108645051 108645051 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . LACE1 NM_145315 exon2 c.G162T p.E54D ATCCGAGAGCATG . 83.0 71.0 70.0 0.0 . 30 . . Atlas-SNP CCR6 1235 hgsc.bcm.edu hg19 6 167549831 167549831 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CCR6 NM_004367 exon3 c.T113C p.L38S GCTCCTTGCAGGA . 66.0 48.0 87.0 0.0 . 36 . . Atlas-SNP HECW1 23072 hgsc.bcm.edu hg19 7 43484630 43484630 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . HECW1 NM_015052 exon11 c.C1859A p.P620H AAGAGCCCGAGGG . 31.0 11.0 34.0 0.0 . 540 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82583500 82583500 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCLO NM_014510 exon5 c.G6769T p.A2257S CACTAGCTCTACC . 48.0 16.0 56.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82764880 82764880 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCLO NM_014510 exon3 c.G1986T p.K662N TGCAGTCTTCAGT . 58.0 27.0 96.0 0.0 . 1506 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121652602 121652602 + Missense_Mutation SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PTPRZ1 NM_002851 exon12 c.T3502A p.L1168I CAGCTCTTATTTT . 45.0 18.0 102.0 0.0 . 605 . . Atlas-SNP PRSS58 136541 hgsc.bcm.edu hg19 7 141955440 141955440 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PRSS58 NM_001001317 exon3 c.G94T p.V32F AATAGACCAAGTA . 133.0 58.0 163.0 0.0 . 41 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3141773 3141773 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CSMD1 NM_033225 exon26 c.G4046A p.S1349N GAGCCACTCCACT . 38.0 23.0 140.0 0.0 . 1469 . . Atlas-SNP MCPH1 79648 hgsc.bcm.edu hg19 8 6302684 6302684 + Missense_Mutation SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MCPH1 NM_001172574 exon8 c.A1441G p.I481V AAAACCATCTCCA . 49.0 22.0 111.0 0.0 . 65 . . Atlas-SNP CPA6 57094 hgsc.bcm.edu hg19 8 68334896 68334896 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CPA6 NM_020361 exon11 c.C1157A p.A386D TTGTAGGCCCAAT . 165.0 22.0 121.0 0.0 . 69 . . Atlas-SNP NCOA2 10499 hgsc.bcm.edu hg19 8 71087033 71087033 + Missense_Mutation SNP C C A rs369349334 alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . NCOA2 NM_006540 exon5 c.G321T p.Q107H GACACCCTGCCCT . 99.0 23.0 63.0 0.0 . 147 . . Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133899348 133899348 + Missense_Mutation SNP C C A rs369032480 alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TG NM_003235 exon9 c.C1731A p.F577L AGAATTCCTTCTC . 246.0 63.0 152.0 0.0 . 416 . . Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143623348 143623348 + Silent SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . BAI1 NM_001702 exon27 c.C3753T p.G1251G CACGGGCACACTG . 49.0 14.0 37.0 0.0 . 146 . . Atlas-SNP MAMDC2 256691 hgsc.bcm.edu hg19 9 72723140 72723140 + Silent SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MAMDC2 NM_153267 exon3 c.T162C p.Y54Y CATTTATGTGGAT . 56.0 29.0 45.0 0.0 . 55 . . Atlas-SNP TRPM3 80036 hgsc.bcm.edu hg19 9 73151774 73151774 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TRPM3 NM_001007471 exon25 c.A4219G p.M1407V CATCCATAGCAGA . 125.0 50.0 146.0 0.0 . 700 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37455583 37455583 + Silent SNP G G T rs75413857 bycluster;alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ANKRD30A NM_052997 exon19 c.G1947T p.A649A GGCTGCGCATCAA . 789.0 155.0 702.0 1.0 . 448 . A|1.000;|0.000 Atlas-SNP HPS6 79803 hgsc.bcm.edu hg19 10 103827340 103827340 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . HPS6 NM_024747 exon1 c.G2109T p.E703D AGCTGAGCTCCTG . 44.0 22.0 33.0 0.0 . 38 . . Atlas-SNP LOC653486 0 hgsc.bcm.edu hg19 11 194445 194445 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . . NM_001097610 exon3 c.G283A p.A95T GACGGTGCCTAAG . 58.0 21.0 73.0 0.0 . . . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 609135 609135 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PHRF1 NM_020901 exon14 c.C3676G p.H1226D GAAGCACATGTCT . 28.0 9.0 24.0 0.0 . 188 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1017131 1017131 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MUC6 NM_005961 exon31 c.C5670A p.H1890Q GGCTGTGTGGGTG . 126.0 21.0 139.0 0.0 . 408 . . Atlas-SNP ZNF215 7762 hgsc.bcm.edu hg19 11 6964783 6964783 + Missense_Mutation SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ZNF215 NM_013250 exon6 c.T623A p.L208Q CACATCTACTTTC . 104.0 46.0 145.0 0.0 . 72 . . Atlas-SNP FAR1 84188 hgsc.bcm.edu hg19 11 13750208 13750208 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . FAR1 NM_032228 exon12 c.T1435C p.W479R CTCATCTGGCGCA . 53.0 18.0 43.0 0.0 . 40 . . Atlas-SNP DPP3 10072 hgsc.bcm.edu hg19 11 66259030 66259030 + Silent SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . DPP3 NM_130443 exon8 c.C864A p.G288G CCAGGGCTCCATC . 53.0 22.0 47.0 0.0 . 61 . . Atlas-SNP ANO1 55107 hgsc.bcm.edu hg19 11 69995875 69995875 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ANO1 NM_018043 exon12 c.C1318T p.L440F TGGGACCTCACGG . 108.0 50.0 136.0 0.0 . 156 . . Atlas-SNP INTS4 92105 hgsc.bcm.edu hg19 11 77692543 77692543 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . INTS4 NM_033547 exon3 c.G326A p.C109Y ATAATGCAGTCTG . 58.0 24.0 56.0 0.0 . 89 . . Atlas-SNP C11orf82 220042 hgsc.bcm.edu hg19 11 82644353 82644353 + Missense_Mutation SNP A A G rs369733646 TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 C11orf82,NS,carcinoma,0,1 C11orf82 NM_145018 exon6 c.A1973G p.N658S ATATCAATAACAA . 82.0 18.0 78.0 0.0 . 71 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92577146 92577146 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . FAT3 NM_001008781 exon18 c.G10613A p.R3538H ACATCCGCGTGCG . 90.0 40.0 121.0 0.0 . 1822 . . Atlas-SNP PIWIL4 143689 hgsc.bcm.edu hg19 11 94316706 94316706 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PIWIL4 NM_152431 exon5 c.C606A p.C202X CGTGTGCATCCAG . 110.0 46.0 138.0 0.0 . 70 . . Atlas-SNP GUCY1A2 2977 hgsc.bcm.edu hg19 11 106810405 106810405 + Missense_Mutation SNP G G C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . GUCY1A2 NM_000855 exon4 c.C987G p.F329L CAAGTGGAAAGGG . 150.0 55.0 163.0 0.0 . 180 . . Atlas-SNP NXPE2 120406 hgsc.bcm.edu hg19 11 114569227 114569227 + Missense_Mutation SNP A A C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . . NM_182495 exon3 c.A593C p.E198A CCAGTGAAGGGGT . 115.0 34.0 150.0 0.0 . . . . Atlas-SNP C2CD2L 9854 hgsc.bcm.edu hg19 11 118980899 118980899 + Missense_Mutation SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . C2CD2L NM_014807 exon2 c.A440G p.E147G AATCTGAGCATAC . 75.0 35.0 103.0 0.0 . 39 . . Atlas-SNP PRB2 653247 hgsc.bcm.edu hg19 12 11546698 11546698 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PRB2 NM_006248 exon3 c.G314T p.G105V TTGTCTCCTTGTG . 122.0 56.0 129.0 0.0 . 168 . . Atlas-SNP SLC4A8 9498 hgsc.bcm.edu hg19 12 51890828 51890828 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SLC4A8 NM_001039960 exon22 c.C3001G p.L1001V CGAGAGCTGAGCT . 171.0 16.0 178.0 0.0 . 292 . . Atlas-SNP CDK2 1017 hgsc.bcm.edu hg19 12 56365394 56365394 + Silent SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CDK2 NM_001798 exon7 c.C882G p.P294P AGTACCCCATCTT . 91.0 31.0 116.0 0.0 . 27 . . Atlas-SNP PPM1H 57460 hgsc.bcm.edu hg19 12 63042384 63042384 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 PPM1H,colon,carcinoma,0,1 PPM1H NM_020700 exon10 c.G1430T p.R477L CGGGCACGCATCA . 55.0 27.0 53.0 0.0 . 42 . . Atlas-SNP TBX5 6910 hgsc.bcm.edu hg19 12 114823367 114823367 + Silent SNP C C A rs376519728 alternate_allele TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 TBX5_ENST00000526441,caecum,carcinoma,0,4 TBX5 NM_000192 exon7 c.G669T p.T223T TAATTGCGTGATC . 70.0 17.0 88.0 0.0 . 188 . . Atlas-SNP KNTC1 9735 hgsc.bcm.edu hg19 12 123070262 123070262 + Missense_Mutation SNP A A T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . KNTC1 NM_014708 exon37 c.A3614T p.E1205V TTCTTGAGTCACA . 63.0 29.0 66.0 0.0 . 182 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124354994 124354994 + Missense_Mutation SNP A A T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . DNAH10 NM_207437 exon43 c.A7247T p.Y2416F CAGAGTATATTCA . 64.0 15.0 65.0 0.0 . 888 . . Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 128899810 128899810 + Missense_Mutation SNP G G C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TMEM132C NM_001136103 exon2 c.G619C p.A207P TTCAGTGCCCCGA . 95.0 52.0 108.0 0.0 . 142 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39262451 39262451 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . FREM2 NM_207361 exon1 c.G970A p.A324T TTCGTGGCCATGA . 129.0 95.0 144.0 0.0 . 385 . . Atlas-SNP EPSTI1 94240 hgsc.bcm.edu hg19 13 43543304 43543304 + Missense_Mutation SNP T T A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . EPSTI1 NM_001002264 exon3 c.A257T p.Q86L AGCTCCTGCTCCG . 25.0 18.0 65.0 0.0 . 47 . . Atlas-SNP BIVM-ERCC5 0 hgsc.bcm.edu hg19 13 103518669 103518669 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . . NM_001204425 exon18 c.C3619G p.Q1207E AAAGCTCAAAAAC . 675.0 128.0 271.0 0.0 . . . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28377352 28377352 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . HERC2 NM_004667 exon81 c.C12464T p.A4155V GTCTGGGCATCTC . 159.0 66.0 225.0 0.0 . 501 . . Atlas-SNP WDR76 79968 hgsc.bcm.edu hg19 15 44158353 44158353 + Silent SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . WDR76 NM_024908 exon13 c.G1644T p.L548L ATGGCTGACCAGG . 94.0 39.0 87.0 0.0 . 34 . . Atlas-SNP ADAMTS7 11173 hgsc.bcm.edu hg19 15 79058475 79058475 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ADAMTS7 NM_014272 exon19 c.C3778A p.L1260M TCCACAGCTCCGC . 35.0 23.0 42.0 0.0 . 142 . . Atlas-SNP KIF7 374654 hgsc.bcm.edu hg19 15 90190176 90190176 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . KIF7 NM_198525 exon7 c.C1673A p.S558Y ACAAAGGACCCGG . 43.0 26.0 81.0 0.0 . 130 . . Atlas-SNP SERPINF2 5345 hgsc.bcm.edu hg19 17 1657772 1657772 + Silent SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SERPINF2 NM_000934 exon10 c.T1420C p.L474L CCTGACTTAAAAC . 46.0 35.0 37.0 0.0 . 33 . . Atlas-SNP KIAA0753 9851 hgsc.bcm.edu hg19 17 6511774 6511774 + Missense_Mutation SNP G G C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . KIAA0753 NM_014804 exon10 c.C1723G p.L575V CCTTTAGCCATGC . 65.0 48.0 79.0 0.0 . 63 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578188 7578188 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 TP53_ENST00000545858,colon,carcinoma,+1,1 TP53 NM_000546 exon6 c.G661T p.E221X GCGGCTCATAGGG . 89.0 64.0 103.0 0.0 . 33396 . . Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17697493 17697493 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . RAI1 NM_030665 exon3 c.G1231T p.A411S ACCCAGGCTGGCA . 58.0 36.0 105.0 0.0 . 121 . . Atlas-SNP RNF135 84282 hgsc.bcm.edu hg19 17 29325932 29325932 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . RNF135 NM_032322 exon5 c.G1022T p.G341V TCCTGGGAAGGAC . 147.0 70.0 108.0 0.0 . 19 . . Atlas-SNP MEOX1 4222 hgsc.bcm.edu hg19 17 41738808 41738808 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MEOX1 NM_004527 exon1 c.C95T p.A32V CCTGAGGCCCCAT . 144.0 59.0 96.0 0.0 . 29 . . Atlas-SNP ITGA2B 3674 hgsc.bcm.edu hg19 17 42453683 42453683 + Missense_Mutation SNP G G C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ITGA2B NM_000419 exon23 c.C2341G p.L781V CTCGCAGCTCCAC . 91.0 42.0 77.0 0.0 . 88 . . Atlas-SNP CRHR1 1394 hgsc.bcm.edu hg19 17 43884410 43884410 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CRHR1 NM_001145148 exon2 c.C68T p.A23V TCTCTGCCTCCCT . 58.0 27.0 40.0 0.0 . 48 . . Atlas-SNP MAP3K3 4215 hgsc.bcm.edu hg19 17 61768464 61768464 + Silent SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MAP3K3 NM_203351 exon14 c.G1308A p.E436E CTAGGAGGTGAGT . 33.0 14.0 50.0 0.0 . 56 . . Atlas-SNP HID1 283987 hgsc.bcm.edu hg19 17 72959876 72959876 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . . NM_030630 exon3 c.G346T p.G116C AGAAGCCCCTCCA . 87.0 28.0 79.0 0.0 . . . . Atlas-SNP TBC1D16 125058 hgsc.bcm.edu hg19 17 77922702 77922702 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TBC1D16 NM_019020 exon8 c.G1510T p.G504W CTTCCCCCCGGAA . 105.0 16.0 70.0 0.0 . 48 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21422647 21422647 + Missense_Mutation SNP A A T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . LAMA3 NM_001127717 exon29 c.A3536T p.E1179V AGATTGAGTTTGA . 183.0 75.0 132.0 0.0 . 397 . . Atlas-SNP SIGLEC15 284266 hgsc.bcm.edu hg19 18 43418741 43418741 + Silent SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . SIGLEC15 NM_213602 exon4 c.G555T p.A185A CCGCGCGCTCTGC . 14.0 7.0 13.0 0.0 . 10 . . Atlas-SNP C18orf25 147339 hgsc.bcm.edu hg19 18 43796312 43796312 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . C18orf25 NM_145055 exon2 c.A466T p.K156X GCCAAGAAAAACC . 141.0 57.0 129.0 0.0 . 27 . . Atlas-SNP ACSBG2 81616 hgsc.bcm.edu hg19 19 6147641 6147641 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ACSBG2 NM_030924 exon3 c.C252G p.N84K TTTCAACCAGTAC . 111.0 24.0 99.0 0.0 . 83 . . Atlas-SNP ZNF823 55552 hgsc.bcm.edu hg19 19 11834023 11834023 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ZNF823 NM_001080493 exon4 c.G326C p.G109A GAATGACCCAAGA . 103.0 21.0 107.0 0.0 . 104 . . Atlas-SNP JAK3 3718 hgsc.bcm.edu hg19 19 17942056 17942056 + Missense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . JAK3 NM_000215 exon21 c.G2959A p.G987S TCTGGCCTGGCTC . 50.0 25.0 61.0 0.0 . 341 . . Atlas-SNP ZNF85 7639 hgsc.bcm.edu hg19 19 21132144 21132144 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ZNF85 NM_001256171 exon5 c.C914A p.T305N TTACTACCCATAA . 49.0 10.0 73.0 0.0 . 72 . . Atlas-SNP ZNF98 148198 hgsc.bcm.edu hg19 19 22575415 22575415 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ZNF98 NM_001098626 exon4 c.A622G p.K208E AGGGTTTCTCTCC . 307.0 152.0 305.0 0.0 . 230 . . Atlas-SNP LGI4 163175 hgsc.bcm.edu hg19 19 35624619 35624619 + Missense_Mutation SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . LGI4 NM_139284 exon3 c.G292T p.G98C ACAGGCCCGCAAA . 58.0 28.0 39.0 0.0 . 32 . . Atlas-SNP PRODH2 58510 hgsc.bcm.edu hg19 19 36297613 36297613 + Silent SNP C C A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PRODH2 NM_021232 exon7 c.G1026T p.G342G CCAGGGCCCGCCT . 51.0 27.0 56.0 0.0 . 68 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39001379 39001379 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . RYR1 NM_001042723 exon60 c.G9080T p.S3027I TGGGCAGCGGTGG . 91.0 41.0 94.0 0.0 . 708 . . Atlas-SNP FCAR 2204 hgsc.bcm.edu hg19 19 55396884 55396884 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . FCAR NM_133279 exon3 c.G308A p.R103K AATATAGGATAGG . 86.0 31.0 83.0 0.0 . 110 . . Atlas-SNP ZNF135 7694 hgsc.bcm.edu hg19 19 58574854 58574854 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . ZNF135 NM_007134 exon3 c.G237T p.E79D GCTGGAGCAAGAG . 112.0 51.0 100.0 0.0 . 159 . . Atlas-SNP PCSK2 5126 hgsc.bcm.edu hg19 20 17240976 17240976 + Missense_Mutation SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCSK2 NM_002594 exon2 c.A269G p.E90G AGCTGGAGAGAGA . 107.0 59.0 121.0 0.0 . 112 . . Atlas-SNP CST9L 128821 hgsc.bcm.edu hg19 20 23546707 23546707 + Silent SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CST9L NM_080610 exon2 c.A258G p.V86V TGAGAATACAGTC . 83.0 38.0 123.0 0.0 . 25 . . Atlas-SNP TTLL9 164395 hgsc.bcm.edu hg19 20 30522615 30522615 + Nonsense_Mutation SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TTLL9 NM_001008409 exon12 c.C928T p.Q310X AGTGTGCAGAAGG . 97.0 24.0 104.0 0.0 . 95 . . Atlas-SNP BPIFA2 140683 hgsc.bcm.edu hg19 20 31768351 31768351 + Silent SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . . NM_080574 exon8 c.G735T p.L245L CCAGCTGCAAACC . 119.0 30.0 116.0 0.0 . . . . Atlas-SNP GNAS 2778 hgsc.bcm.edu hg19 20 57428698 57428698 + Missense_Mutation SNP G G T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . GNAS NM_001077490 exon1 c.G191T p.G64V CAGTGGGGTCCAT . 46.0 27.0 61.0 0.0 . 867 . . Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19687499 19687499 + Missense_Mutation SNP G G C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TMPRSS15 NM_002772 exon17 c.C1996G p.L666V AGTGCAGATGACC . 87.0 38.0 79.0 0.0 . 189 . . Atlas-SNP TRAPPC10 7109 hgsc.bcm.edu hg19 21 45504036 45504036 + Silent SNP C C T novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . TRAPPC10 NM_003274 exon15 c.C2272T p.L758L AGGCAGCTGTGCG . 68.0 20.0 45.0 0.0 . 109 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26164107 26164107 + Missense_Mutation SNP C C G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . MYO18B NM_032608 exon4 c.C224G p.P75R GCCAACCCAACAG . 266.0 71.0 266.0 0.0 . 322 . . Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46930838 46930838 + Missense_Mutation SNP T T C novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CELSR1 NM_014246 exon1 c.A2230G p.I744V GGGTGATGAGGCC . 37.0 12.0 39.0 0.0 . 242 . . Atlas-SNP UBA1 7317 hgsc.bcm.edu hg19 X 47065468 47065468 + Missense_Mutation SNP A A G novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . UBA1 NM_153280 exon15 c.A1697G p.Q566R TTTTCCAAAACCT . 103.0 72.0 121.0 0.0 . 89 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13916 13916 + Missense_Mutation SNP G G A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . . ENST00000361567 exon1 c.G1580A p.G527E TACTCGGATTCTA . 273.0 197.0 13.0 0.0 . . . . Atlas-SNP NOL4 8715 hgsc.bcm.edu hg19 18 31523091 31523097 + Frame_Shift_Del DEL CCAAGAT CCAAGAT - novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 CCAAGAT CCAAGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . NOL4 NM_003787 exon9 c.1475_1481del p.492_494del . . 111.0 32.0 108.0 0.0 . 139 . . Atlas-Indel,Pindel RB1 5925 hgsc.bcm.edu hg19 13 49039196 49039228 + In_Frame_Del DEL GGTCTTCATGCAGAGACTGAAAACAAATATTTT GGTCTTCATGCAGAGACTGAAAACAAATATTTT - novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 GGTCTTCATGCAGAGACTGAAAACAAATATTTT GGTCTTCATGCAGAGACTGAAAACAAATATTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 RB1_ENST00000267163,NS,carcinoma,0,2 RB1 NM_000321 exon22 c.2273_2305del p.758_769del . . 51.0 17.0 163.0 0.0 . 1068 . . Atlas-Indel,Pindel CALB1 793 hgsc.bcm.edu hg19 8 91094853 91094853 + Frame_Shift_Del DEL C C - novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . CALB1 NM_004929 exon1 c.74delC p.A25fs . . 156.0 62.0 84.0 0.0 . 25 . . Atlas-Indel,Pindel PCK1 5105 hgsc.bcm.edu hg19 20 56140768 56140769 + Frame_Shift_Del DEL GA GA - novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCK1 NM_002591 exon10 c.1776_1777del p.592_593del . . 143.0 63.0 146.0 0.0 . 95 . . Atlas-Indel,Pindel PCDHB16 57717 hgsc.bcm.edu hg19 5 140562729 140562730 + Frame_Shift_Ins INS - - A novel TCGA-CC-A7IG-01A-11D-A33K-10 TCGA-CC-A7IG-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b4be76e-ec2a-4157-a9ad-333f706662d5 b69cebd4-506b-4c1a-9724-dd4429b628b2 . PCDHB16 NM_020957 exon1 c.595_596insA p.E199fs . . 77.0 28.0 69.0 0.0 . 159 . . Atlas-Indel,Pindel