Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm EFHD2 79180 hgsc.bcm.edu hg19 1 15753664 15753664 + Missense_Mutation SNP A A G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . EFHD2 NM_024329 exon3 c.A475G p.K159E TTCCGCAAGGCGG . 67.0 30.0 131.0 0.0 . 10 . . Atlas-SNP ZMYM1 79830 hgsc.bcm.edu hg19 1 35578710 35578710 + Missense_Mutation SNP A A G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ZMYM1 NM_024772 exon10 c.A1279G p.N427D AAAGACAATATGA . 144.0 31.0 238.0 0.0 . 86 . . Atlas-SNP EBNA1BP2 10969 hgsc.bcm.edu hg19 1 43637963 43637963 + Silent SNP A A G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . EBNA1BP2 NM_001159936 exon1 c.T130C p.L44L TGCTCAACTTTTG . 49.0 13.0 93.0 0.0 . 37 . . Atlas-SNP IL12RB2 3595 hgsc.bcm.edu hg19 1 67833704 67833704 + Silent SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . IL12RB2 NM_001559 exon10 c.T1455C p.I485I TCTGATTTCAGGT . 47.0 6.0 53.0 0.0 . 94 . . Atlas-SNP MAN1A2 10905 hgsc.bcm.edu hg19 1 117944848 117944848 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . MAN1A2 NM_006699 exon2 c.C343T p.H115Y GCTGATCATGAGA . 122.0 27.0 186.0 0.0 . 50 . . Atlas-SNP RCSD1 92241 hgsc.bcm.edu hg19 1 167666394 167666394 + Missense_Mutation SNP A A C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RCSD1 NM_052862 exon6 c.A533C p.Q178P GGTCACAGTCAGA . 167.0 12.0 167.0 0.0 . 64 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216040477 216040477 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . USH2A NM_206933 exon44 c.A8717G p.N2906S ACACTGTTGTGTA . 134.0 57.0 129.0 0.0 . 1168 . . Atlas-SNP TRIM58 25893 hgsc.bcm.edu hg19 1 248024000 248024000 + Missense_Mutation SNP A A G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . TRIM58 NM_015431 exon2 c.A502G p.T168A AAAAAGACTGTCA . 140.0 67.0 163.0 0.0 . 143 . . Atlas-SNP OR14I1 401994 hgsc.bcm.edu hg19 1 248844793 248844793 + Silent SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . OR14I1 NM_001004734 exon1 c.G813T p.V271V AGCAATCACTAAA . 65.0 14.0 64.0 0.0 . 64 . . Atlas-SNP FAM179A 165186 hgsc.bcm.edu hg19 2 29259514 29259514 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . FAM179A NM_199280 exon18 c.C2526A p.H842Q CTTACACCCCATG . 90.0 36.0 98.0 0.0 . 106 . . Atlas-SNP ASTL 431705 hgsc.bcm.edu hg19 2 96799781 96799781 + Missense_Mutation SNP A A C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ASTL NM_001002036 exon4 c.T260G p.L87R GCTGACAGCAGTC . 36.0 13.0 67.0 0.0 . 59 . . Atlas-SNP ST6GAL2 84620 hgsc.bcm.edu hg19 2 107423271 107423271 + Silent SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ST6GAL2 NM_032528 exon6 c.C1453T p.L485L AGAGTAGTGGGTG . 75.0 35.0 89.0 0.0 . 159 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210588377 210588377 + Missense_Mutation SNP A A T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . MAP2 NM_001039538 exon12 c.A1235T p.K412M GTTCCAAGGATAA . 167.0 74.0 234.0 0.0 . 372 . . Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225688292 225688292 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DOCK10 NM_014689 exon28 c.C3109A p.H1037N TCACATGGTCGGA . 89.0 44.0 91.0 0.0 . 308 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154146446 154146446 + Missense_Mutation SNP A A T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . GPR149 NM_001038705 exon1 c.T959A p.V320D AGGACGACTTTTG . 114.0 47.0 189.0 0.0 . 134 . . Atlas-SNP MFSD1 64747 hgsc.bcm.edu hg19 3 158525238 158525238 + Silent SNP A A C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . MFSD1 NM_022736 exon5 c.A573C p.G191G ATTTGGAAGATTT . 71.0 29.0 116.0 0.0 . 88 . . Atlas-SNP VPS8 23355 hgsc.bcm.edu hg19 3 184646286 184646286 + Missense_Mutation SNP G G C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . VPS8 NM_001009921 exon31 c.G2679C p.E893D TGAAGAGAGTCGA . 96.0 44.0 116.0 0.0 . 109 . . Atlas-SNP LGI2 55203 hgsc.bcm.edu hg19 4 25005095 25005095 + Missense_Mutation SNP A A G rs150163590 TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . LGI2 NM_018176 exon8 c.T1616C p.I539T ACAATTATATGTT . 105.0 43.0 147.0 0.0 . 62 . A|1.000;G|0.000 Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 42895442 42895442 + Missense_Mutation SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . GRXCR1 NM_001080476 exon1 c.T159A p.D53E GATAGATGGACTA . 89.0 47.0 119.0 0.0 . 78 . . Atlas-SNP KDR 3791 hgsc.bcm.edu hg19 4 55964415 55964415 + Missense_Mutation SNP C C G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . KDR NM_002253 exon17 c.G2398C p.G800R AGTAGCCTGTCTT . 83.0 21.0 139.0 0.0 . 307 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155412382 155412382 + Silent SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DCHS2 NM_001142552 exon1 c.G126A p.R42R CTGCGTCCTGGCG . 63.0 14.0 86.0 0.0 . 594 . . Atlas-SNP RAPGEF2 9693 hgsc.bcm.edu hg19 4 160243510 160243510 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RAPGEF2 NM_014247 exon4 c.G382T p.E128X CTCTTGGAATTTA . 71.0 53.0 152.0 0.0 . 171 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175898867 175898867 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ADAM29 NM_001130703 exon4 c.C2191A p.Q731K CCTCCCCAGAGTC . 58.0 50.0 143.0 0.0 . 262 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175898869 175898869 + Silent SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 ADAM29,colon,carcinoma,0,1 ADAM29 NM_001130703 exon4 c.G2193A p.Q731Q TCCCCAGAGTCAA . 58.0 50.0 142.0 1.0 . 262 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5462512 5462512 + Missense_Mutation SNP G G C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . KIAA0947 NM_015325 exon13 c.G3065C p.G1022A GCTGTGGAGACAC . 67.0 15.0 102.0 0.0 . 301 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7709399 7709399 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 ADCY2_ENST00000537121,NS,carcinoma,-1,3 ADCY2 NM_020546 exon10 c.C1477T p.R493C TCGGTCCGCATGA . 85.0 29.0 94.0 0.0 . 337 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13917343 13917343 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DNAH5 NM_001369 exon8 c.G998A p.R333Q GTGATTCGAATAT . 63.0 26.0 64.0 0.0 . 868 . . Atlas-SNP PJA2 9867 hgsc.bcm.edu hg19 5 108714271 108714271 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . PJA2 NM_014819 exon4 c.A917G p.H306R CTTCCATGGTTCT . 86.0 18.0 90.0 0.0 . 53 . . Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140433011 140433011 + Silent SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . PCDHB1 NM_013340 exon1 c.T1956A p.A652A ACCAGCTCTTTCC . 81.0 33.0 108.0 0.0 . 148 . . Atlas-SNP IRF4 3662 hgsc.bcm.edu hg19 6 393203 393203 + Silent SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . IRF4 NM_001195286 exon2 c.G51A p.V17V CGCGGTGAGCTGC . 123.0 51.0 134.0 0.0 . 65 . . Atlas-SNP AGER 177 hgsc.bcm.edu hg19 6 32149151 32149151 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . AGER NM_172197 exon9 c.G940A p.A314T TTGCCGCCTTTGC . 57.0 21.0 55.0 0.0 . 15 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38858481 38858481 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DNAH8 NM_001206927 exon58 c.T8527C p.C2843R CAAATATGTGAGA . 62.0 30.0 87.0 0.0 . 1239 . . Atlas-SNP MAP7 9053 hgsc.bcm.edu hg19 6 136704840 136704840 + Silent SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . MAP7 NM_001198609 exon6 c.A672T p.S224S TGCAGATGAAGAG . 46.0 35.0 84.0 0.0 . 63 . . Atlas-SNP FBXL18 80028 hgsc.bcm.edu hg19 7 5541166 5541166 + Missense_Mutation SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . FBXL18 NM_024963 exon3 c.A734T p.E245V ACCACCTCCTGGT . 70.0 33.0 87.0 0.0 . 99 . . Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98552830 98552830 + Missense_Mutation SNP A A T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . TRRAP NM_001244580 exon40 c.A5819T p.Q1940L GGCACCAGATGCT . 69.0 35.0 83.0 0.0 . 863 . . Atlas-SNP CYP3A5 1577 hgsc.bcm.edu hg19 7 99270218 99270218 + Silent SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CYP3A5 NM_001190484 exon4 c.C303A p.V101V TGTGAAGACAGAA . 131.0 48.0 149.0 0.0 . 46 . . Atlas-SNP ZNF777 27153 hgsc.bcm.edu hg19 7 149152414 149152414 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ZNF777 NM_015694 exon2 c.C700A p.L234M TCTCCAGATGGTT . 66.0 26.0 73.0 0.0 . 63 . . Atlas-SNP GIMAP1-GIMAP5 0 hgsc.bcm.edu hg19 7 150416151 150416151 + Missense_Mutation SNP A A C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . . NM_001199577 exon2 c.A16C p.M6L AGGAAGATGGCGA . 50.0 23.0 73.0 0.0 . . . . Atlas-SNP HTR5A 3361 hgsc.bcm.edu hg19 7 154862937 154862937 + Missense_Mutation SNP G G T rs141719500 alternate_allele TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 HTR5A,NS,carcinoma,0,1 HTR5A NM_024012 exon1 c.G328T p.G110C CAGCTAGGTCGGA . 14.0 6.0 26.0 0.0 . 114 . G|1.000;C|0.000 Atlas-SNP IMPAD1 54928 hgsc.bcm.edu hg19 8 57892756 57892756 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . IMPAD1 NM_017813 exon2 c.A388G p.I130V TATTAATCTGCAT . 66.0 38.0 96.0 0.0 . 27 . . Atlas-SNP TMEM74 157753 hgsc.bcm.edu hg19 8 109796877 109796877 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . TMEM74 NM_153015 exon2 c.G451T p.A151S TGGCAGCCTCTTG . 240.0 114.0 143.0 0.0 . 70 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113418769 113418769 + Silent SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 CSMD3_ENST00000343508,NS,carcinoma,0,1 CSMD3 NM_198123 exon35 c.C5793A p.S1931S AGGTAAGGAATCA . 222.0 85.0 170.0 0.0 . 2325 . . Atlas-SNP MRPL13 28998 hgsc.bcm.edu hg19 8 121444294 121444294 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . MRPL13 NM_014078 exon3 c.A221G p.Q74R ACTTTTTGTTCCC . 207.0 21.0 138.0 0.0 . 18 . . Atlas-SNP KDM4C 23081 hgsc.bcm.edu hg19 9 6986628 6986628 + Missense_Mutation SNP G G C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . KDM4C NM_001146696 exon11 c.G1705C p.V569L CCAGCGGTCCCCA . 61.0 11.0 100.0 0.0 . 186 . . Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14816776 14816776 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . FREM1 NM_144966 exon16 c.G2640T p.E880D ACCCACCTCAACA . 40.0 25.0 63.0 0.0 . 261 . . Atlas-SNP GNE 10020 hgsc.bcm.edu hg19 9 36246477 36246477 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . GNE NM_001128227 exon3 c.A260G p.N87S TATGTATTTCTAA . 33.0 22.0 47.0 0.0 . 141 . . Atlas-SNP TRPM3 80036 hgsc.bcm.edu hg19 9 73442764 73442764 + Silent SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . TRPM3 NM_001007471 exon6 c.A972T p.T324T CTTACTTGTGTTT . 81.0 20.0 80.0 0.0 . 700 . . Atlas-SNP TRPM3 80036 hgsc.bcm.edu hg19 9 73479369 73479369 + Missense_Mutation SNP G G C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . TRPM3 NM_001007471 exon2 c.C236G p.P79R GTGCTGGGTATGA . 38.0 12.0 51.0 0.0 . 700 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79322771 79322771 + Silent SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . PRUNE2 NM_015225 exon8 c.G4419A p.E1473E CTCTGGCTCTAGA . 37.0 19.0 65.0 0.0 . 331 . . Atlas-SNP PSAT1 29968 hgsc.bcm.edu hg19 9 80923477 80923477 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . PSAT1 NM_021154 exon6 c.T718C p.Y240H TCCTTGTACAACA . 31.0 18.0 40.0 0.0 . 33 . . Atlas-SNP GFI1B 8328 hgsc.bcm.edu hg19 9 135862139 135862139 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . GFI1B NM_001135031 exon2 c.C74T p.P25L ATGAACCGCTCTG . 34.0 17.0 64.0 0.0 . 37 . . Atlas-SNP KCNT1 57582 hgsc.bcm.edu hg19 9 138676396 138676396 + Missense_Mutation SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . KCNT1 NM_020822 exon26 c.T2959A p.Y987N AAGGACTACATGA . 62.0 24.0 114.0 0.0 . 139 . . Atlas-SNP FAM69B 138311 hgsc.bcm.edu hg19 9 139612124 139612124 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . FAM69B NM_152421 exon2 c.C159A p.Y53X GTCCTACTCGGAG . 27.0 15.0 28.0 0.0 . 22 . . Atlas-SNP PARD3 56288 hgsc.bcm.edu hg19 10 34558586 34558586 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . PARD3 NM_019619 exon22 c.A3427G p.S1143G CCTACCTGTCTAC . 77.0 28.0 96.0 0.0 . 131 . . Atlas-SNP CSTF2T 23283 hgsc.bcm.edu hg19 10 53458521 53458521 + Silent SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CSTF2T NM_015235 exon1 c.A789T p.P263P TGGAGCTGGAATT . 48.0 23.0 49.0 0.0 . 64 . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 55582876 55582876 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . PCDH15 NM_001142763 exon35 c.C4631A p.S1544X TTTGTTGATACTT . 53.0 22.0 65.0 0.0 . 1715 . . Atlas-SNP CCSER2 54462 hgsc.bcm.edu hg19 10 86131217 86131217 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CCSER2 NM_018999 exon2 c.G409T p.E137X ACAGAGGAGTTAA . 163.0 72.0 173.0 0.0 . 7 . . Atlas-SNP TEX36 387718 hgsc.bcm.edu hg19 10 127350498 127350498 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . . NM_001128202 exon2 c.G100T p.A34S ACGTAGCACTGGT . 64.0 25.0 82.0 0.0 . . . . Atlas-SNP HPX 3263 hgsc.bcm.edu hg19 11 6453022 6453022 + Silent SNP T T C rs377761910 TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . HPX NM_000613 exon9 c.A978G p.V326V GACATATACCTGG . 42.0 20.0 45.0 0.0 . 33 . . Atlas-SNP OLFML1 283298 hgsc.bcm.edu hg19 11 7530924 7530924 + Missense_Mutation SNP A A C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . OLFML1 NM_198474 exon3 c.A714C p.K238N AATCAAATATAAC . 81.0 31.0 116.0 0.0 . 54 . . Atlas-SNP SLC17A6 57084 hgsc.bcm.edu hg19 11 22380971 22380971 + Silent SNP T T G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . SLC17A6 NM_020346 exon4 c.T471G p.A157A CGGAGCTGCCATA . 47.0 20.0 62.0 0.0 . 135 . . Atlas-SNP OR8J1 219477 hgsc.bcm.edu hg19 11 56127868 56127868 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 OR8J1,NS,carcinoma,0,1 OR8J1 NM_001005205 exon1 c.C146A p.T49N CCCTCACCAGTGT . 145.0 71.0 168.0 0.0 . 87 . . Atlas-SNP AQP11 282679 hgsc.bcm.edu hg19 11 77301269 77301269 + Missense_Mutation SNP A A T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . AQP11 NM_173039 exon1 c.A232T p.T78S ACCTGGACGCTGA . 46.0 19.0 51.0 0.0 . 14 . . Atlas-SNP MAML2 84441 hgsc.bcm.edu hg19 11 95825257 95825257 + Silent SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 MAML2,colon,carcinoma,0,1 MAML2 NM_032427 exon2 c.A1938G p.Q646Q CTGCTGTTGTTGC . 44.0 4.0 54.0 1.0 . 94 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103018556 103018556 + Missense_Mutation SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DYNC2H1 NM_001377 exon19 c.G2758A p.D920N GTGATTGATGATC . 46.0 14.0 61.0 0.0 . 246 . . Atlas-SNP BUD13 84811 hgsc.bcm.edu hg19 11 116628662 116628662 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . BUD13 NM_032725 exon8 c.G1504A p.A502T TCTGGGCAAGCCT . 35.0 13.0 42.0 0.0 . 41 . . Atlas-SNP OR8G2 26492 hgsc.bcm.edu hg19 11 124095697 124095697 + Silent SNP A A C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . . NM_001007249 exon1 c.A300C p.T100T TGTGACAGAGAAG . 68.0 21.0 103.0 0.0 . . . . Atlas-SNP BCAT1 586 hgsc.bcm.edu hg19 12 25002861 25002861 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . BCAT1 NM_001178093 exon6 c.C569A p.P190H TTGGTAGGCTTCT . 79.0 36.0 102.0 0.0 . 44 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43860553 43860553 + Silent SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ADAMTS20 NM_025003 exon9 c.A1269G p.K423K TGTAACTTTCATT . 54.0 17.0 79.0 0.0 . 635 . . Atlas-SNP NFE2 4778 hgsc.bcm.edu hg19 12 54686660 54686660 + Missense_Mutation SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . NFE2 NM_001261461 exon4 c.C620T p.P207L GAGGAGGGCTCTA . 103.0 26.0 151.0 0.0 . 28 . . Atlas-SNP DEPDC4 120863 hgsc.bcm.edu hg19 12 100660786 100660786 + Silent SNP A A T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DEPDC4 NM_152317 exon1 c.T69A p.L23L ACTGACAAGTCTA . 60.0 21.0 77.0 0.0 . 34 . . Atlas-SNP CCDC53 51019 hgsc.bcm.edu hg19 12 102433674 102433674 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CCDC53 NM_016053 exon5 c.A407G p.Y136C CTGGCATATCTTG . 64.0 36.0 67.0 0.0 . 14 . . Atlas-SNP UBC 7316 hgsc.bcm.edu hg19 12 125397123 125397123 + Missense_Mutation SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . UBC NM_021009 exon2 c.C1195T p.P399S CACTCGGCTCCAC . 238.0 87.0 310.0 0.0 . 79 . . Atlas-SNP COG3 83548 hgsc.bcm.edu hg19 13 46083887 46083887 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . COG3 NM_031431 exon15 c.G1655T p.G552V TTCATGGAATGTG . 83.0 30.0 199.0 0.0 . 52 . . Atlas-SNP UGGT2 55757 hgsc.bcm.edu hg19 13 96555132 96555132 + Silent SNP A A G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . UGGT2 NM_020121 exon21 c.T2478C p.D826D AATTTTATCTCCA . 94.0 20.0 83.0 0.0 . 127 . . Atlas-SNP NPAS3 64067 hgsc.bcm.edu hg19 14 34269611 34269611 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . NPAS3 NM_001164749 exon12 c.G2098T p.G700W GGCGGTGGGGGTG . 74.0 16.0 92.0 0.0 . 266 . . Atlas-SNP KCNK10 54207 hgsc.bcm.edu hg19 14 88707142 88707142 + Missense_Mutation SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . KCNK10 NM_138318 exon3 c.C425T p.A142V ACTCCCGCATTGT . 29.0 12.0 49.0 0.0 . 273 . . Atlas-SNP BTBD7 55727 hgsc.bcm.edu hg19 14 93720042 93720042 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . BTBD7 NM_001002860 exon7 c.G1703A p.G568D TAGATGCCAGCAT . 62.0 20.0 61.0 0.0 . 112 . . Atlas-SNP BAG5 9529 hgsc.bcm.edu hg19 14 104026264 104026264 + Missense_Mutation SNP T T C rs143892215 alternate_allele TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . BAG5 NM_001015049 exon2 c.A1361G p.D454G TGCGGATCAACAG . 98.0 44.0 121.0 0.0 . 47 . T|1.000;A|0.000 Atlas-SNP RASGRP1 10125 hgsc.bcm.edu hg19 15 38794569 38794569 + Missense_Mutation SNP T T G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RASGRP1 NM_005739 exon12 c.A1482C p.E494D TTCAAATTCTTCC . 78.0 43.0 88.0 0.0 . 50 . . Atlas-SNP ITGA11 22801 hgsc.bcm.edu hg19 15 68657110 68657110 + Missense_Mutation SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ITGA11 NM_001004439 exon4 c.G292A p.E98K TCCGCTCGGACAC . 123.0 28.0 118.0 0.0 . 110 . . Atlas-SNP CCNF 899 hgsc.bcm.edu hg19 16 2499459 2499459 + Silent SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CCNF NM_001761 exon12 c.G1395T p.G465G GCACGGGCAGAGT . 13.0 6.0 14.0 0.0 . 110 . . Atlas-SNP RBBP6 5930 hgsc.bcm.edu hg19 16 24579152 24579152 + Missense_Mutation SNP T T G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RBBP6 NM_006910 exon16 c.T1992G p.D664E AAATGATTTTGCT . 178.0 15.0 250.0 0.0 . 158 . . Atlas-SNP DNAJA2 10294 hgsc.bcm.edu hg19 16 47005262 47005262 + Missense_Mutation SNP T T G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . DNAJA2 NM_005880 exon3 c.A361C p.K121Q TTCACTTGAGTGG . 225.0 158.0 99.0 0.0 . 28 . . Atlas-SNP CD68 968 hgsc.bcm.edu hg19 17 7483022 7483022 + Silent SNP G G C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CD68 NM_001040059 exon1 c.G27C p.G9G CTCGGGGGCCCTG . 22.0 12.0 55.0 0.0 . 17 . . Atlas-SNP CACNB1 782 hgsc.bcm.edu hg19 17 37347830 37347830 + Missense_Mutation SNP T T C novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CACNB1 NM_199248 exon3 c.A188G p.Y63C CTGGTGTAGGACT . 46.0 12.0 64.0 0.0 . 89 . . Atlas-SNP ZCCHC2 54877 hgsc.bcm.edu hg19 18 60242216 60242216 + Missense_Mutation SNP C C G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ZCCHC2 NM_017742 exon13 c.C2902G p.P968A CCAGGCCCTGCCC . 52.0 21.0 58.0 0.0 . 64 . . Atlas-SNP CDH7 1005 hgsc.bcm.edu hg19 18 63511191 63511191 + Silent SNP T T A rs139333396 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CDH7 NM_004361 exon7 c.T1125A p.P375P GCCCCCTGTGTTC . 137.0 48.0 183.0 0.0 . 362 . T|0.999;C|0.001 Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9059979 9059979 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 MUC16_ENST00000397910,NS,carcinoma,0,2 MUC16 NM_024690 exon3 c.C27467A p.S9156Y GGAGAAGATGAGG . 66.0 19.0 95.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9084032 9084032 + Missense_Mutation SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . MUC16 NM_024690 exon1 c.A7783T p.S2595C AAAGGCTCTCAGG . 96.0 23.0 128.0 0.0 . 4315 . . Atlas-SNP CALR 811 hgsc.bcm.edu hg19 19 13054713 13054713 + Missense_Mutation SNP A A G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CALR NM_004343 exon9 c.A1240G p.K414E CAGGCCAAGGACG . 109.0 37.0 181.0 0.0 . 31 . . Atlas-SNP NOVA2 4858 hgsc.bcm.edu hg19 19 46457041 46457041 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . NOVA2 NM_002516 exon3 c.G393T p.K131N GACCTGCTTGGCT . 67.0 25.0 140.0 0.0 . 38 . . Atlas-SNP CARD8 22900 hgsc.bcm.edu hg19 19 48734194 48734194 + Silent SNP C C T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . CARD8 NM_001184900 exon6 c.G612A p.E204E TGTGACCTCATCC . 98.0 68.0 135.0 0.0 . 53 . . Atlas-SNP ZNF551 90233 hgsc.bcm.edu hg19 19 58193543 58193543 + Silent SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ZNF551 NM_138347 exon1 c.G12T p.P4P CGCCCCGGTCGGC . 17.0 10.0 17.0 0.0 . 65 . . Atlas-SNP C20orf27 54976 hgsc.bcm.edu hg19 20 3739248 3739248 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . C20orf27 NM_001039140 exon3 c.G172T p.D58Y TCTCATCAAAGTG . 23.0 18.0 46.0 0.0 . 17 . . Atlas-SNP SSTR4 6754 hgsc.bcm.edu hg19 20 23016896 23016896 + Missense_Mutation SNP G G A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . SSTR4 NM_001052 exon1 c.G776A p.R259K TCACCAGGCTGGT . 33.0 10.0 44.0 0.0 . 83 . . Atlas-SNP TBC1D25 4943 hgsc.bcm.edu hg19 X 48418242 48418242 + Missense_Mutation SNP G G T novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . TBC1D25 NM_002536 exon6 c.G946T p.D316Y CTGCACGACCTGC . 63.0 53.0 77.0 0.0 . 70 . . Atlas-SNP ARMCX1 51309 hgsc.bcm.edu hg19 X 100808723 100808723 + Silent SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ARMCX1 NM_016608 exon4 c.C810A p.A270A CAATGCCCTTAAT . 33.0 27.0 34.0 0.0 . 67 . . Atlas-SNP ARMCX1 51309 hgsc.bcm.edu hg19 X 100808724 100808724 + Missense_Mutation SNP C C A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ARMCX1 NM_016608 exon4 c.C811A p.L271I AATGCCCTTAATA . 33.0 27.0 34.0 0.0 . 67 . . Atlas-SNP RHOXF1 158800 hgsc.bcm.edu hg19 X 119243261 119243261 + Splice_Site SNP C C G novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RHOXF1 NM_139282 exon4 c.445-1G>C . CCAAACCTACAAT . 39.0 35.0 64.0 0.0 . 24 . . Atlas-SNP GPR119 139760 hgsc.bcm.edu hg19 X 129518890 129518890 + Missense_Mutation SNP T T A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . GPR119 NM_178471 exon1 c.A532T p.M178L GGAGCATGGCTGG . 38.0 32.0 54.0 0.0 . 34 . . Atlas-SNP RB1 5925 hgsc.bcm.edu hg19 13 48954325 48954326 + Frame_Shift_Del DEL TC TC - novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 TC TC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RB1 NM_000321 exon16 c.1445_1446del p.482_482del . . 37.0 20.0 199.0 0.0 . 1068 . . Atlas-INDEL RB1 5925 hgsc.bcm.edu hg19 13 48954328 48954334 + Frame_Shift_Del DEL TATGTCT TATGTCT - rs5803433 alternate_allele TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 TATGTCT TATGTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RB1 NM_000321 exon16 c.1448_1454del p.483_485del . . 36.0 20.0 206.0 0.0 . 1068 . . Atlas-INDEL ZNF669 79862 hgsc.bcm.edu hg19 1 247264138 247264138 + Frame_Shift_Del DEL A A - novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ZNF669 NM_024804 exon4 c.934delG p.G312fs . . 92.0 22.0 84.0 0.0 . 46 . . Atlas-Indel,Pindel RPS4Y1 6192 hgsc.bcm.edu hg19 Y 2722723 2722724 + Frame_Shift_Ins INS - - CT novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RPS4Y1 NM_001008 exon5 c.443_444insCT p.R148fs . . 122.0 99.0 141.0 0.0 . 4 . . Atlas-Indel,Pindel ZNF680 340252 hgsc.bcm.edu hg19 7 63982871 63982872 + Frame_Shift_Del DEL AT AT - novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . ZNF680 NM_178558 exon4 c.261_262del p.87_88del . . 46.0 14.0 54.0 0.0 . 58 . . Atlas-Indel,Pindel STX10 8677 hgsc.bcm.edu hg19 19 13259885 13259886 + Frame_Shift_Ins INS - - A novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . STX10 NM_003765 exon4 c.321_322insT p.V107fs . . 71.0 16.0 139.0 0.0 . 12 . . Atlas-Indel,Pindel FAM220A 84792 hgsc.bcm.edu hg19 7 6370320 6370355 + In_Frame_Del DEL GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT - novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . . NM_001037163 exon2 c.432_467del p.144_156del . . 42.0 12.0 98.0 0.0 . . . . Pindel RB1 5925 hgsc.bcm.edu hg19 13 48954325 48954334 + Frame_Shift_Del DEL TCATATGTCT TCATATGTCT - novel TCGA-CC-A7IF-01A-11D-A33K-10 TCGA-CC-A7IF-10A-01D-A33K-10 TCATATGTCT TCATATGTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6bd5100-cf29-4f48-82d6-9f3a0c8891a2 37a06484-87a9-4ed4-b9bc-9f9a5ae7a317 . RB1 NM_000321 exon16 c.1445_1454del p.482_485del . . 44.0 20.0 210.0 0.0 . 1068 . . Pindel