Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MTOR	2475	hgsc.bcm.edu	hg19	1	11298100	11298100	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MTOR	NM_004958	exon13	c.G2008C	p.D670H	GAATGTCAGGGTC	.	160.0	50.0	161.0	0.0	.	327	.	.	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	hg19	1	16060357	16060357	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLEKHM2	NM_015164	exon20	c.C2988T	p.S996S	CTTGAGCCTCATC	.	182.0	50.0	265.0	0.0	.	94	.	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	hg19	1	158059547	158059547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	KIRREL	NM_018240	exon10	c.T1211C	p.V404A	ATGCTGTGAGGGG	.	228.0	43.0	187.0	0.0	.	346	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181767459	181767459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CACNA1E	NM_001205293	exon48	c.C6431T	p.P2144L	CCATCCCCTCTGT	.	34.0	6.0	24.0	0.0	.	778	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185992215	185992215	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	HMCN1	NM_031935	exon36	c.T5679C	p.A1893A	AGATGCTGGCAGA	.	150.0	28.0	142.0	0.0	.	797	.	.	Atlas-SNP
SERTAD4	56256	hgsc.bcm.edu	hg19	1	210412936	210412936	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SERTAD4	NM_019605	exon3	c.A274T	p.S92C	CCACTCAGCAGCT	.	186.0	65.0	140.0	0.0	.	53	.	.	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	hg19	1	223176572	223176572	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DISP1	NM_032890	exon10	c.C1833A	p.T611T	CGTCACCAGTTTT	.	177.0	14.0	150.0	0.0	.	145	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28761221	28761221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLB1	NM_001170585	exon10	c.G624A	p.M208I	GCTGATGGGGGTG	.	33.0	13.0	42.0	0.0	.	255	.	.	Atlas-SNP
MBD5	55777	hgsc.bcm.edu	hg19	2	149226010	149226010	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MBD5	NM_018328	exon9	c.T498C	p.N166N	TAAGAATCCTTTC	.	131.0	9.0	105.0	0.0	.	164	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196759699	196759699	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH7	NM_018897	exon31	c.4896+1G>T	.	TACTTGCCTTTTC	.	205.0	46.0	195.0	0.0	.	512	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210680056	210680056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UNC80	NM_182587	exon9	c.C1276A	p.L426M	ACCAATCTGCGTA	.	91.0	12.0	50.0	0.0	.	280	.	.	Atlas-SNP
SLC25A38	54977	hgsc.bcm.edu	hg19	3	39433444	39433444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SLC25A38	NM_017875	exon5	c.T557G	p.L186R	CTCTCCTTCGAGA	.	184.0	31.0	156.0	0.0	.	25	.	.	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	hg19	3	113092280	113092280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	WDR52	NM_001164496	exon18	c.C2422T	p.P808S	GGATGGGATTGTC	.	89.0	9.0	99.0	0.0	.	151	.	.	Atlas-SNP
MRPL3	11222	hgsc.bcm.edu	hg19	3	131208896	131208896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	MRPL3,right_upper_lobe,carcinoma,0,1	MRPL3	NM_007208	exon5	c.G497A	p.R166Q	AGTTCCCGGTAAA	.	64.0	12.0	42.0	0.0	.	32	.	.	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	hg19	4	66467871	66467871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EPHA5	NM_004439	exon3	c.C398T	p.T133I	CGCAGGGTAAATT	.	41.0	7.0	43.0	0.0	.	315	.	.	Atlas-SNP
ATOH1	474	hgsc.bcm.edu	hg19	4	94750441	94750441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ATOH1	NM_005172	exon1	c.G364T	p.V122L	GGGCCGGTGAAAG	.	110.0	12.0	132.0	0.0	.	40	.	.	Atlas-SNP
ANKRD34B	340120	hgsc.bcm.edu	hg19	5	79855469	79855469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ANKRD34B	NM_001004441	exon5	c.T370C	p.Y124H	TAGCATAAACAAG	.	128.0	33.0	145.0	0.0	.	61	.	.	Atlas-SNP
TRIM36	55521	hgsc.bcm.edu	hg19	5	114462308	114462308	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRIM36	NM_018700	exon10	c.G2079A	p.V693V	ACAGTCCACTTGG	.	129.0	31.0	120.0	0.0	.	126	.	.	Atlas-SNP
REEP2	51308	hgsc.bcm.edu	hg19	5	137780443	137780443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	REEP2	NM_016606	exon5	c.G304C	p.E102Q	CCATAGGAGATCG	.	109.0	24.0	121.0	0.0	.	21	.	.	Atlas-SNP
EDN1	1906	hgsc.bcm.edu	hg19	6	12294540	12294540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EDN1	NM_001955	exon4	c.A436G	p.K146E	AAAGGAAAAGACT	.	396.0	117.0	419.0	0.0	.	23	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38891940	38891940	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH8	NM_001206927	exon73	c.10962+2T>C	.	CAACTGTAAGTTT	.	44.0	17.0	44.0	0.0	.	1239	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56391319	56391319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DST	NM_015548	exon50	c.T10100G	p.L3367R	TCATTAAGGGAGT	.	108.0	33.0	110.0	0.0	.	1427	.	.	Atlas-SNP
GLCCI1	113263	hgsc.bcm.edu	hg19	7	8125841	8125841	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	GLCCI1,right_upper_lobe,carcinoma,0,1	GLCCI1	NM_138426	exon8	c.G1317A	p.S439S	TATCTCGGCCCCT	.	35.0	3.0	27.0	0.0	.	50	.	.	Atlas-SNP
POU6F2	11281	hgsc.bcm.edu	hg19	7	39379463	39379463	+	Missense_Mutation	SNP	C	C	A	rs150071017	bycluster;byfrequency;alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	POU6F2	NM_007252	exon6	c.C734A	p.A245E	AACAGGCGCCTCA	.	75.0	14.0	59.0	0.0	.	117	.	C|0.994;T|0.006	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47886599	47886599	+	Silent	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PKD1L1	NM_138295	exon32	c.T5031G	p.A1677A	TGCCTTAGCTAAA	.	181.0	52.0	193.0	0.0	.	328	.	.	Atlas-SNP
ALDH1B1	219	hgsc.bcm.edu	hg19	9	38396047	38396047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ALDH1B1	NM_000692	exon2	c.G302T	p.R101L	CTGAGCGGGGCCG	.	90.0	28.0	79.0	0.0	.	50	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73426150	73426150	+	Silent	SNP	C	C	A	rs200079844	by1000genomes;alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	TRPM3,colon,carcinoma,0,2	TRPM3	NM_001007470	exon7	c.G525T	p.P175P	GAAAAACGGCAGG	.	144.0	30.0	122.0	0.0	.	700	.	C|1.000;T|0.000	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113137703	113137703	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SVEP1	NM_153366	exon46	c.G10545A	p.V3515V	AGGGGCCACACAG	.	173.0	28.0	180.0	0.0	.	326	.	.	Atlas-SNP
COL13A1	1305	hgsc.bcm.edu	hg19	10	71700763	71700763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	COL13A1	NM_001130103	exon34	c.G1865A	p.G622D	TGGACGGCAGGCC	.	73.0	21.0	86.0	0.0	.	133	.	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115987675	115987675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TDRD1	NM_198795	exon24	c.T3410C	p.M1137T	AAAAGATGTATAG	.	42.0	10.0	51.0	0.0	.	126	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1262923	1262923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MUC5B	NM_002458	exon31	c.G4813A	p.G1605R	TGCAGGGGACGTG	.	102.0	24.0	132.0	0.0	.	473	.	.	Atlas-SNP
PPP1CA	5499	hgsc.bcm.edu	hg19	11	67166225	67166225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PPP1CA	NM_001008709	exon6	c.A883G	p.S295G	CCACACTCATCAT	.	76.0	5.0	104.0	0.0	.	83	.	.	Atlas-SNP
UBASH3B	84959	hgsc.bcm.edu	hg19	11	122647740	122647740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UBASH3B	NM_032873	exon3	c.C224T	p.S75F	TATTCTCCCATGT	.	96.0	4.0	125.0	0.0	.	73	.	.	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	hg19	11	123483491	123483491	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRAMD1B	NM_020716	exon14	c.C1513A	p.R505R	CGCTATCGAAAAC	.	122.0	31.0	107.0	0.0	.	122	.	.	Atlas-SNP
PDZRN4	29951	hgsc.bcm.edu	hg19	12	41966919	41966919	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PDZRN4	NM_001164595	exon10	c.C2338G	p.Q780E	GCCACCCAGTCCT	.	136.0	21.0	114.0	0.0	.	346	.	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56478884	56478884	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ERBB3	NM_001982	exon3	c.A340T	p.K114X	GATGGGAAGTTTG	.	141.0	16.0	128.0	0.0	.	350	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72021636	72021636	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZFC3H1	NM_144982	exon21	c.A4025T	p.N1342I	GTCTCATTTGTAA	.	76.0	11.0	91.0	0.0	.	172	.	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31318460	31318460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRPM1	NM_001252020	exon26	c.G3562A	p.D1188N	CCTCGTCGCTAAG	.	38.0	5.0	43.0	0.0	.	183	.	.	Atlas-SNP
FSIP1	161835	hgsc.bcm.edu	hg19	15	40062634	40062634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	FSIP1	NM_152597	exon3	c.T304C	p.C102R	CTGAACACTCAGA	.	42.0	7.0	45.0	0.0	.	53	.	.	Atlas-SNP
PLA2G4E	123745	hgsc.bcm.edu	hg19	15	42285005	42285005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLA2G4E	NM_001206670	exon13	c.G1400A	p.S467N	TCCTGGCTGCGCT	.	74.0	7.0	114.0	0.0	.	60	.	.	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4033250	4033250	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ADCY9	NM_001116	exon7	c.C2502T	p.S834S	CGCGAGGGACAGC	.	40.0	13.0	67.0	0.0	.	151	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31926823	31926823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	ZNF267,rectum,carcinoma,0,1	ZNF267	NM_003414	exon4	c.G1253A	p.R418H	CCTTTCGCTGTAG	.	34.0	11.0	35.0	0.0	.	94	.	.	Atlas-SNP
ACSF3	197322	hgsc.bcm.edu	hg19	16	89180877	89180877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ACSF3	NM_174917	exon6	c.A1108G	p.T370A	CTGACCACTGCCG	.	53.0	17.0	87.0	0.0	.	40	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79094590	79094590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AATK	NM_001080395	exon11	c.G3146A	p.G1049D	CCAGAGCCTTGTG	.	33.0	5.0	47.0	0.0	.	102	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22156012	22156012	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF208	NM_007153	exon4	c.C1824A	p.P608P	TTTGTAGGGTTTC	.	28.0	5.0	30.0	0.0	.	817	.	.	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	hg19	19	33493213	33493213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	RHPN2	NM_033103	exon9	c.G1045A	p.A349T	GGTGGGCCTTCAC	.	192.0	22.0	194.0	0.0	.	107	.	.	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	hg19	19	54756260	54756260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LILRB5	NM_001081442	exon11	c.C1545A	p.S515R	AACTGGGCTGGCC	.	55.0	10.0	77.0	0.0	.	176	.	.	Atlas-SNP
ZNF551	90233	hgsc.bcm.edu	hg19	19	58198623	58198623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF551	NM_138347	exon3	c.G980C	p.R327T	ACCAGAGACGTCA	.	75.0	23.0	77.0	0.0	.	65	.	.	Atlas-SNP
PNPLA3	80339	hgsc.bcm.edu	hg19	22	44328955	44328955	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PNPLA3	NM_025225	exon4	c.C684T	p.P228P	TGTCCCCCCGGAT	.	121.0	22.0	80.0	0.0	.	53	.	.	Atlas-SNP
UBQLN2	29978	hgsc.bcm.edu	hg19	X	56590709	56590709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UBQLN2	NM_013444	exon1	c.C403G	p.P135A	TCCACACCTATTT	.	127.0	19.0	138.0	0.0	.	55	.	.	Atlas-SNP
LONRF3	79836	hgsc.bcm.edu	hg19	X	118145797	118145797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LONRF3	NM_001031855	exon8	c.A1672G	p.I558V	GTGCCTATTTTCG	.	103.0	28.0	147.0	0.0	.	138	.	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56137828	56137828	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	PCK1,colon,carcinoma,0,1	PCK1	NM_002591	exon4	c.482delC	p.T161fs	.	.	140.0	29.0	136.0	0.0	.	95	.	.	Atlas-Indel,Pindel
AXIN1	8312	hgsc.bcm.edu	hg19	16	396352	396352	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AXIN1	NM_003502	exon2	c.675delC	p.S225fs	.	.	56.0	10.0	59.0	0.0	.	290	.	.	Atlas-INDEL
WRN	7486	hgsc.bcm.edu	hg19	8	30941291	30941351	+	In_Frame_Del	DEL	TTAAGGTATGTTTACAATTATAAAAATATTACTTCAAGTTCTTTCCAAAGGACATTTAATT	TTAAGGTATGTTTACAATTATAAAAATATTACTTCAAGTTCTTTCCAAAGGACATTTAATT	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	TTAAGGTATGTTTACAATTATAAAAATATTACTTCAAGTTCTTTCCAAAGGACATTTAATT	TTAAGGTATGTTTACAATTATAAAAATATTACTTCAAGTTCTTTCCAAAGGACATTTAATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	WRN	NM_000553	exon10	c.1345_1350del	p.449_450del	.	.	188.0	18.0	160.0	0.0	.	116	.	.	Pindel
AXIN1	8312	hgsc.bcm.edu	hg19	16	396352	396353	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AXIN1	NM_003502	exon2	c.674_675del	p.225_225del	.	.	56.0	10.0	60.0	0.0	.	290	.	.	Pindel