Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MEGF6 1953 hgsc.bcm.edu hg19 1 3425655 3425655 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MEGF6 NM_001409 exon12 c.G1512A p.T504T TGTGAGCGTGTGT . 138.0 41.0 114.0 0.0 . 91 . . Atlas-SNP COL16A1 1307 hgsc.bcm.edu hg19 1 32158742 32158742 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . COL16A1 NM_001856 exon13 c.A1022T p.E341V CCCCGCTCACCTT . 113.0 18.0 125.0 0.0 . 137 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34498286 34498286 + Silent SNP T T G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CSMD2 NM_052896 exon3 c.A306C p.P102P GGTGGCTGGCAGC . 93.0 12.0 83.0 0.0 . 946 . . Atlas-SNP CNN3 1266 hgsc.bcm.edu hg19 1 95364951 95364951 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CNN3 NM_001839 exon6 c.G624A p.M208I AGTGCCCATCTGC . 67.0 15.0 128.0 0.0 . 23 . . Atlas-SNP FNDC7 163479 hgsc.bcm.edu hg19 1 109273448 109273448 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . FNDC7 NM_001144937 exon9 c.C1777T p.L593F CACTGCCTCCTAG . 98.0 18.0 106.0 0.0 . 113 . . Atlas-SNP DCLRE1B 64858 hgsc.bcm.edu hg19 1 114454510 114454510 + Silent SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . DCLRE1B NM_022836 exon4 c.A1296G p.S432S ATTTTCAGTGCAC . 102.0 18.0 117.0 0.0 . 36 . . Atlas-SNP LRRC71 149499 hgsc.bcm.edu hg19 1 156901780 156901780 + Missense_Mutation SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . LRRC71 NM_144702 exon13 c.A1402G p.M468V GTTTTCATGCCTG . 187.0 16.0 210.0 0.0 . 33 . . Atlas-SNP DDR2 4921 hgsc.bcm.edu hg19 1 162688873 162688873 + Missense_Mutation SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . DDR2 NM_001014796 exon4 c.T20C p.M7T CCAGAATGCTCTT . 64.0 15.0 118.0 0.0 . 228 . . Atlas-SNP MFSD4 148808 hgsc.bcm.edu hg19 1 205568282 205568282 + Silent SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MFSD4 NM_181644 exon9 c.T1392C p.Y464Y CAGCTATAGTTTC . 317.0 73.0 369.0 0.0 . 46 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228461239 228461239 + Missense_Mutation SNP C C A rs189809636 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 OBSCN_ENST00000570156,NS,carcinoma,0,2 OBSCN NM_001271223 exon21 c.C6253A p.H2085N CGCCTGCACGTGG . 156.0 21.0 224.0 0.0 . 2142 . C|0.995;T|0.005 Atlas-SNP ZNF496 84838 hgsc.bcm.edu hg19 1 247464447 247464447 + Nonsense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 ZNF496,right_lower_lobe,carcinoma,0,1 ZNF496 NM_032752 exon9 c.G1138T p.E380X GCTTCTCTGTGGG . 154.0 47.0 190.0 0.0 . 80 . . Atlas-SNP TRIM58 25893 hgsc.bcm.edu hg19 1 248039390 248039390 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TRIM58 NM_015431 exon6 c.G1060A p.E354K GTGGGAGAAGGAG . 193.0 11.0 206.0 0.0 . 143 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125555776 125555776 + Silent SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CNTNAP5 NM_130773 exon19 c.A3093T p.T1031T TTACACAGATTCA . 199.0 53.0 243.0 0.0 . 405 . . Atlas-SNP IWS1 55677 hgsc.bcm.edu hg19 2 128247424 128247424 + Nonsense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . IWS1 NM_017969 exon11 c.C2143T p.R715X TTCGTCGTTGAGG . 268.0 41.0 348.0 0.0 . 61 . . Atlas-SNP MYO3B 140469 hgsc.bcm.edu hg19 2 171259467 171259467 + Missense_Mutation SNP C C G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MYO3B NM_001083615 exon19 c.C2239G p.Q747E CAAATCCAGTACT . 102.0 16.0 126.0 0.0 . 320 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210699734 210699734 + Missense_Mutation SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . UNC80 NM_032504 exon18 c.A3041T p.H1014L CAGAGCAGTAAGT . 19.0 6.0 62.0 0.0 . 280 . . Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13383318 13383318 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . NUP210 NM_024923 exon23 c.A3158T p.Q1053L CTGGTCTGGCCGA . 193.0 57.0 217.0 0.0 . 182 . . Atlas-SNP SCN5A 6331 hgsc.bcm.edu hg19 3 38645542 38645542 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SCN5A NM_001160160 exon12 c.G1551A p.R517R AGAAGTCCTGCTG . 107.0 16.0 101.0 0.0 . 634 . . Atlas-SNP SCN11A 11280 hgsc.bcm.edu hg19 3 38991632 38991632 + Silent SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SCN11A NM_014139 exon1 c.A222T p.I74I CTTTCCTATGAGC . 152.0 26.0 170.0 0.0 . 296 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121179064 121179064 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . POLQ NM_199420 exon25 c.G6985T p.A2329S AGTCAGCAGCCAG . 155.0 24.0 159.0 0.0 . 273 . . Atlas-SNP MGLL 11343 hgsc.bcm.edu hg19 3 127413989 127413989 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MGLL NM_007283 exon7 c.G645A p.L215L CACCTTCAGCCCT . 165.0 36.0 232.0 0.0 . 19 . . Atlas-SNP WDR49 151790 hgsc.bcm.edu hg19 3 167277892 167277892 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . WDR49 NM_178824 exon5 c.A611T p.E204V CGAGTCTCATTTG . 152.0 44.0 222.0 0.0 . 188 . . Atlas-SNP LAMTOR3 8649 hgsc.bcm.edu hg19 4 100808468 100808468 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . LAMTOR3 NM_021970 exon4 c.G88T p.V30L CAGGTACTCCATC . 143.0 42.0 214.0 0.0 . 6 . . Atlas-SNP PDCD6 10016 hgsc.bcm.edu hg19 5 306821 306821 + Missense_Mutation SNP G G C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PDCD6 NM_001267556 exon4 c.G313C p.D105H GACCGGGACAACT . 220.0 30.0 184.0 0.0 . 24 . . Atlas-SNP EXOC3 11336 hgsc.bcm.edu hg19 5 464493 464493 + Missense_Mutation SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . EXOC3 NM_007277 exon10 c.A1742G p.N581S ATTTCAACGATTT . 74.0 7.0 85.0 0.0 . 54 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71491475 71491475 + Missense_Mutation SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MAP1B NM_005909 exon5 c.T2293C p.S765P GAAGAGTCTGTCA . 82.0 12.0 116.0 0.0 . 243 . . Atlas-SNP EPB41L4A 64097 hgsc.bcm.edu hg19 5 111600669 111600669 + Missense_Mutation SNP C C A rs370791654 alternate_allele TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . EPB41L4A NM_022140 exon6 c.G478T p.V160L CAGATACATATCC . 85.0 13.0 75.0 0.0 . 130 . . Atlas-SNP YTHDC2 64848 hgsc.bcm.edu hg19 5 112899131 112899131 + Missense_Mutation SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . YTHDC2 NM_022828 exon19 c.T2384C p.M795T TTCTTATGAAAGC . 124.0 17.0 104.0 0.0 . 118 . . Atlas-SNP GRAMD3 65983 hgsc.bcm.edu hg19 5 125821443 125821443 + Missense_Mutation SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . GRAMD3 NM_001146319 exon11 c.A1081G p.I361V CACCATATTCTTA . 39.0 6.0 52.0 0.0 . 30 . . Atlas-SNP HSPA4 3308 hgsc.bcm.edu hg19 5 132400692 132400692 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . HSPA4 NM_002154 exon2 c.C128T p.P43L TTGGTCCTAAGAA . 209.0 32.0 183.0 0.0 . 68 . . Atlas-SNP PCDHGB7 56099 hgsc.bcm.edu hg19 5 140798233 140798233 + Silent SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PCDHGB7 NM_018927 exon1 c.G807A p.Q269Q TGACCAGGACGAG . 41.0 5.0 37.0 0.0 . 117 . . Atlas-SNP ARHGAP26 23092 hgsc.bcm.edu hg19 5 142435642 142435642 + Nonsense_Mutation SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ARHGAP26 NM_015071 exon16 c.A1423T p.K475X TTCATCAAAGCAG . 51.0 8.0 59.0 0.0 . 57 . . Atlas-SNP GRM4 2914 hgsc.bcm.edu hg19 6 34029743 34029743 + Nonsense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . GRM4 NM_001256811 exon4 c.A799T p.K267X TGATCTTGTCGAA . 170.0 55.0 214.0 0.0 . 317 . . Atlas-SNP PRSS35 167681 hgsc.bcm.edu hg19 6 84233541 84233541 + Silent SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PRSS35 NM_153362 exon2 c.C381A p.T127T TGGCACCGACAGC . 157.0 10.0 210.0 0.0 . 60 . . Atlas-SNP MTFR2 113115 hgsc.bcm.edu hg19 6 136562631 136562631 + Missense_Mutation SNP C C G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . . NM_138419 exon5 c.G465C p.Q155H TGCAATCTGAGAG . 149.0 10.0 155.0 0.0 . . . . Atlas-SNP INTS1 26173 hgsc.bcm.edu hg19 7 1529320 1529320 + Splice_Site SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . INTS1 NM_001080453 exon18 c.2166-2A>T . GGTACCTGGAAGG . 65.0 9.0 79.0 0.0 . 145 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94057038 94057038 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . COL1A2 NM_000089 exon49 c.C3367A p.R1123S CAGCCTCGCTCAG . 87.0 26.0 123.0 0.0 . 240 . . Atlas-SNP LRWD1 222229 hgsc.bcm.edu hg19 7 102113247 102113247 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . LRWD1 NM_152892 exon14 c.C1799T p.T600I CCCCCACACAGGT . 141.0 6.0 110.0 0.0 . 41 . . Atlas-SNP CFTR 1080 hgsc.bcm.edu hg19 7 117243675 117243675 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CFTR NM_000492 exon17 c.T2747A p.F916Y ATGTGTTTTACAT . 118.0 11.0 243.0 0.0 . 171 . . Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117432538 117432538 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CTTNBP2 NM_033427 exon4 c.C712T p.R238W GTTCCCGCTCAGT . 232.0 28.0 233.0 0.0 . 200 . . Atlas-SNP SLC13A4 26266 hgsc.bcm.edu hg19 7 135377154 135377154 + Silent SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SLC13A4 NM_012450 exon11 c.T1137C p.T379T AAATCCAGTCACC . 81.0 17.0 86.0 0.0 . 56 . . Atlas-SNP TRIM24 8805 hgsc.bcm.edu hg19 7 138239638 138239638 + Missense_Mutation SNP G G A rs201288398 alternate_allele TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TRIM24 NM_015905 exon9 c.G1457A p.R486Q TGCAACGGAGGCC . 129.0 11.0 244.0 0.0 . 131 . G|0.999;T|0.001 Atlas-SNP JHDM1D 80853 hgsc.bcm.edu hg19 7 139791731 139791731 + Silent SNP C C T rs376853003 TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . JHDM1D NM_030647 exon19 c.G2604A p.A868A CTGGCACGCCCCC . 181.0 9.0 201.0 0.0 . 54 . . Atlas-SNP NOS3 4846 hgsc.bcm.edu hg19 7 150708074 150708074 + Missense_Mutation SNP G G C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . NOS3 NM_000603 exon23 c.G2984C p.G995A TCCGGGGGTAAGT . 48.0 10.0 78.0 0.0 . 131 . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151970873 151970873 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 MLL3_ENST00000355193,NS,carcinoma,0,2 MLL3 NM_170606 exon7 c.G929T p.C310F GCAGCACAAGGAT . 394.0 18.0 472.0 0.0 . 1564 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2799992 2799992 + Splice_Site SNP A A C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CSMD1 NM_033225 exon70 c.10535+2T>G . TGCAGTACCTGTG . 41.0 23.0 51.0 0.0 . 1469 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3443701 3443701 + Silent SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CSMD1 NM_033225 exon9 c.A1179G p.T393T CGTCTCTGTAACT . 75.0 21.0 79.0 0.0 . 1469 . . Atlas-SNP CHRNB3 1142 hgsc.bcm.edu hg19 8 42587427 42587427 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CHRNB3 NM_000749 exon5 c.C977T p.S326F CTTCTTCCACGTA . 438.0 176.0 300.0 0.0 . 74 . . Atlas-SNP CRISPLD1 83690 hgsc.bcm.edu hg19 8 75932132 75932132 + Silent SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 .,1 CRISPLD1 NM_031461 exon11 c.A1155G p.T385T CTTCACAGTCTCT . 165.0 56.0 211.0 0.0 . 94 . . Atlas-SNP PMP2 5375 hgsc.bcm.edu hg19 8 82357106 82357106 + Silent SNP G G C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 PMP2,right_lower_lobe,carcinoma,0,1 PMP2 NM_002677 exon2 c.C192G p.S64S CTTGAAGGAGATT . 104.0 13.0 117.0 0.0 . 21 . . Atlas-SNP ATP6V0D2 245972 hgsc.bcm.edu hg19 8 87165053 87165053 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 ATP6V0D2,NS,carcinoma,0,1 ATP6V0D2 NM_152565 exon8 c.G900T p.M300I ACAAATGAATGTG . 64.0 21.0 84.0 0.0 . 61 . . Atlas-SNP CNGB3 54714 hgsc.bcm.edu hg19 8 87755800 87755800 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CNGB3 NM_019098 exon1 c.A56T p.E19V TCATTCTCATTGT . 285.0 120.0 397.0 0.0 . 176 . . Atlas-SNP SNTB1 6641 hgsc.bcm.edu hg19 8 121644855 121644855 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 SNTB1,colon,NS,0,1 SNTB1 NM_021021 exon3 c.G825A p.T275T GATCACCGTGTGC . 96.0 5.0 131.0 0.0 . 54 . . Atlas-SNP ZHX1 11244 hgsc.bcm.edu hg19 8 124266621 124266621 + Silent SNP T T C rs373764646 alternate_allele TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ZHX1 NM_007222 exon3 c.A1566G p.S522S ACTCTTTGAATTT . 54.0 20.0 100.0 0.0 . 89 . . Atlas-SNP PRSS3 5646 hgsc.bcm.edu hg19 9 33796749 33796749 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PRSS3 NM_007343 exon2 c.G320A p.G107D GCGGTGGCTCCCT . 174.0 21.0 229.0 0.0 . 79 . . Atlas-SNP DAB2IP 153090 hgsc.bcm.edu hg19 9 124535287 124535287 + Missense_Mutation SNP C C G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . DAB2IP NM_032552 exon12 c.C2396G p.S799C CGCTCTCCTTCCA . 98.0 28.0 148.0 0.0 . 150 . . Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25861801 25861801 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . GPR158 NM_020752 exon7 c.T1738A p.Y580N TGGGACTACATGA . 102.0 17.0 201.0 0.0 . 255 . . Atlas-SNP GDF2 2658 hgsc.bcm.edu hg19 10 48413759 48413759 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . GDF2 NM_016204 exon2 c.C1109T p.P370L TTCGTCGGCGTCA . 141.0 18.0 162.0 0.0 . 77 . . Atlas-SNP KIF11 3832 hgsc.bcm.edu hg19 10 94369152 94369152 + Missense_Mutation SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . KIF11 NM_004523 exon6 c.T584C p.I195T GAGTGATAATTAA . 60.0 9.0 91.0 0.0 . 58 . . Atlas-SNP HSPA12A 259217 hgsc.bcm.edu hg19 10 118458224 118458224 + Silent SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . HSPA12A NM_025015 exon5 c.G468T p.T156T TGCTGCCGTCAGG . 89.0 28.0 124.0 0.0 . 81 . . Atlas-SNP DMBT1 1755 hgsc.bcm.edu hg19 10 124377713 124377713 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . DMBT1 NM_007329 exon38 c.C4685A p.A1562D GAAATGCCCAGTT . 66.0 21.0 100.0 0.0 . 677 . . Atlas-SNP SYT8 90019 hgsc.bcm.edu hg19 11 1858034 1858034 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SYT8 NM_138567 exon7 c.T775A p.S259T CCCAGCTCAGGCC . 94.0 11.0 107.0 0.0 . 29 . . Atlas-SNP TNNT3 7140 hgsc.bcm.edu hg19 11 1955638 1955638 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TNNT3 NM_006757 exon12 c.C443T p.S148F CTCTGTCTTCCAT . 92.0 14.0 82.0 0.0 . 68 . . Atlas-SNP STK33 65975 hgsc.bcm.edu hg19 11 8496345 8496345 + Silent SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . STK33 NM_030906 exon3 c.A108G p.P36P CAAAACTGGAGGA . 92.0 21.0 140.0 0.0 . 147 . . Atlas-SNP RBM14 10432 hgsc.bcm.edu hg19 11 66384504 66384504 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . RBM14 NM_001198837 exon1 c.G313T p.V105F GGACGCGTCATCG . 76.0 9.0 73.0 0.0 . 59 . . Atlas-SNP FOLR4 390243 hgsc.bcm.edu hg19 11 94040391 94040391 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . FOLR4 NM_001199206 exon3 c.G409A p.E137K GACTGTGAGGAGT . 112.0 12.0 162.0 0.0 . 31 . . Atlas-SNP C11orf87 399947 hgsc.bcm.edu hg19 11 109294862 109294862 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 C11orf87,rectum,carcinoma,0,2 C11orf87 NM_207645 exon2 c.C503A p.P168Q CTCCACCGCCAGC . 64.0 19.0 71.0 0.0 . 37 . . Atlas-SNP LHX5 64211 hgsc.bcm.edu hg19 12 113901064 113901064 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . LHX5 NM_022363 exon5 c.C1140A p.S380R GGTGCCGCTCATT . 34.0 14.0 20.0 0.0 . 39 . . Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121432040 121432040 + Missense_Mutation SNP C C G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 HNF1A,NS,other,-1,2 HNF1A NM_000545 exon4 c.C787G p.R263G GAGGTGCGTGTCT . 61.0 5.0 111.0 0.0 . 302 . . Atlas-SNP GOLGA3 2802 hgsc.bcm.edu hg19 12 133384623 133384623 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . GOLGA3 NM_001172557 exon5 c.G1032T p.M344I GTTGACCATATAG . 103.0 30.0 124.0 0.0 . 234 . . Atlas-SNP UCHL3 7347 hgsc.bcm.edu hg19 13 76140947 76140947 + Silent SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . UCHL3 NM_006002 exon4 c.G300A p.L100L TGGACTGATTCAT . 54.0 8.0 102.0 0.0 . 9 . . Atlas-SNP C14orf166B 145497 hgsc.bcm.edu hg19 14 77311222 77311222 + Silent SNP G G A rs374431496 TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . C14orf166B NM_194287 exon7 c.G705A p.G235G AGGAGGGGAGCAC . 51.0 17.0 67.0 0.0 . 52 . . Atlas-SNP NRXN3 9369 hgsc.bcm.edu hg19 14 79269978 79269978 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . NRXN3 NM_004796 exon6 c.G941A p.S314N TCCTGAGCTATGA . 107.0 27.0 130.0 0.0 . 342 . . Atlas-SNP KIF26A 26153 hgsc.bcm.edu hg19 14 104642658 104642658 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . KIF26A NM_015656 exon12 c.G3533T p.G1178V GCCCTGGGGAAGT . 107.0 34.0 83.0 0.0 . 84 . . Atlas-SNP SLC12A1 6557 hgsc.bcm.edu hg19 15 48500027 48500027 + Missense_Mutation SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SLC12A1 NM_001184832 exon2 c.T111A p.D37E TGCAGATGACAAT . 83.0 25.0 120.0 0.0 . 243 . . Atlas-SNP SHC4 399694 hgsc.bcm.edu hg19 15 49135766 49135766 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SHC4 NM_203349 exon10 c.G1323A p.G441G CTGCACCCCTCTT . 186.0 57.0 183.0 0.0 . 70 . . Atlas-SNP UBE2Q2 92912 hgsc.bcm.edu hg19 15 76165791 76165791 + Missense_Mutation SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . UBE2Q2 NM_173469 exon5 c.A470G p.Y157C ATCACTATGAGAT . 130.0 20.0 183.0 0.0 . 26 . . Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89417182 89417182 + Silent SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ACAN NM_013227 exon17 c.C7443A p.V2481V GTTTGTCCAGCGC . 95.0 9.0 107.0 0.0 . 220 . . Atlas-SNP KIF22 3835 hgsc.bcm.edu hg19 16 29811026 29811026 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . KIF22 NM_007317 exon7 c.C1068T p.V356V CACAGTCTCCGCA . 124.0 22.0 225.0 0.0 . 29 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 65038624 65038624 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 CDH11_ENST00000394156,NS,carcinoma,-1,2 CDH11 NM_001797 exon3 c.G149A p.R50H TTGGAGCGCTGTA . 95.0 19.0 109.0 0.0 . 260 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 65038770 65038770 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CDH11 NM_001797 exon3 c.G3T p.M1I CTCCTTCATTTTT . 133.0 31.0 178.0 0.0 . 260 . . Atlas-SNP WWP2 11060 hgsc.bcm.edu hg19 16 69959360 69959360 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . WWP2 NM_001270454 exon11 c.C1207T p.P403S CATGATCCCCTGG . 157.0 40.0 129.0 0.0 . 88 . . Atlas-SNP FOXL1 2300 hgsc.bcm.edu hg19 16 86612389 86612389 + Silent SNP G G C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . FOXL1 NM_005250 exon1 c.G60C p.L20L GTATCTGTACGGT . 96.0 11.0 115.0 0.0 . 39 . . Atlas-SNP OR3A3 8392 hgsc.bcm.edu hg19 17 3324438 3324438 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . OR3A3 NM_012373 exon1 c.C577T p.L193F CCACAGCTCTTCC . 311.0 13.0 262.0 0.0 . 20 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 203.0 103.0 211.0 0.0 . 33396 . . Atlas-SNP MYH2 4620 hgsc.bcm.edu hg19 17 10432947 10432947 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MYH2 NM_017534 exon24 c.G3051A p.Q1017Q CTCTGCCTGCAGG . 362.0 166.0 335.0 0.0 . 390 . . Atlas-SNP NSRP1 84081 hgsc.bcm.edu hg19 17 28511699 28511699 + Silent SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . NSRP1 NM_032141 exon7 c.A684G p.P228P AATACCACAAGAG . 280.0 15.0 145.0 0.0 . 49 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45885990 45885990 + Silent SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . OSBPL7 NM_145798 exon22 c.C2334T p.A778A CTTCTGGGCCTCA . 237.0 33.0 305.0 0.0 . 65 . . Atlas-SNP SLC16A6 9120 hgsc.bcm.edu hg19 17 66267772 66267772 + Missense_Mutation SNP T T C rs139961659 TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SLC16A6 NM_001174166 exon6 c.A529G p.I177V AGCCAATGCGCTC . 95.0 19.0 93.0 0.0 . 56 . T|1.000;C|0.000 Atlas-SNP TMC6 11322 hgsc.bcm.edu hg19 17 76113656 76113656 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TMC6 NM_001127198 exon17 c.G2091T p.W697C GCGCACCCACACC . 67.0 20.0 86.0 0.0 . 42 . . Atlas-SNP NDC80 10403 hgsc.bcm.edu hg19 18 2610833 2610833 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . NDC80 NM_006101 exon16 c.G1764A p.M588I AGAGATGGTTGCT . 174.0 22.0 213.0 0.0 . 62 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 7023225 7023225 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . LAMA1 NM_005559 exon19 c.C2639A p.A880D CAGTGGGCGCCAT . 119.0 10.0 122.0 0.0 . 458 . . Atlas-SNP CEP192 55125 hgsc.bcm.edu hg19 18 13049219 13049219 + Missense_Mutation SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CEP192 NM_032142 exon16 c.A2429T p.D810V CTTGGGATTTATC . 80.0 11.0 72.0 0.0 . 340 . . Atlas-SNP ABHD3 171586 hgsc.bcm.edu hg19 18 19263896 19263896 + Silent SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ABHD3 NM_138340 exon4 c.G540A p.A180A CTCCCCCGCCACT . 193.0 46.0 189.0 0.0 . 32 . . Atlas-SNP KIAA1328 57536 hgsc.bcm.edu hg19 18 34646878 34646878 + Missense_Mutation SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . KIAA1328 NM_020776 exon7 c.A602G p.Q201R CTCTCCAGTGTTC . 142.0 33.0 166.0 0.0 . 39 . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 51025767 51025767 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . DCC NM_005215 exon27 c.C3998T p.T1333I TCCCCACAGCTTG . 84.0 9.0 171.0 0.0 . 360 . . Atlas-SNP C2CD4C 126567 hgsc.bcm.edu hg19 19 407975 407975 + Silent SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . C2CD4C NM_001136263 exon2 c.C387T p.D129D CTGGGGGTCGGCG . 125.0 27.0 121.0 0.0 . 13 . . Atlas-SNP SEMA6B 10501 hgsc.bcm.edu hg19 19 4550257 4550257 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SEMA6B NM_032108 exon12 c.G1149A p.M383I GTACTGCATCCCG . 107.0 26.0 138.0 0.0 . 51 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9011461 9011461 + Silent SNP A A G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MUC16 NM_024690 exon36 c.T38772C p.D12924D GATGGCATCCATT . 154.0 12.0 241.0 0.0 . 4315 . . Atlas-SNP ZNF878 729747 hgsc.bcm.edu hg19 19 12155914 12155914 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ZNF878 NM_001080404 exon4 c.C302T p.S101L TCATATGATTGTA . 124.0 31.0 142.0 0.0 . 172 . . Atlas-SNP ZNF709 163051 hgsc.bcm.edu hg19 19 12575313 12575313 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ZNF709 NM_152601 exon4 c.C1423T p.P475S CATAGGGTTTCTC . 42.0 8.0 51.0 0.0 . 80 . . Atlas-SNP U2AF1L4 199746 hgsc.bcm.edu hg19 19 36236067 36236067 + Missense_Mutation SNP C C T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . U2AF1L4 NM_144987 exon2 c.G91A p.D31N ACCGGTCCCCGTG . 56.0 19.0 78.0 0.0 . 34 . . Atlas-SNP PSMC4 5704 hgsc.bcm.edu hg19 19 40485836 40485836 + Missense_Mutation SNP C C G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PSMC4 NM_006503 exon7 c.C786G p.I262M CATCATCTTCATA . 161.0 34.0 188.0 0.0 . 48 . . Atlas-SNP LYPD3 27076 hgsc.bcm.edu hg19 19 43969676 43969676 + Silent SNP T T A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . LYPD3 NM_014400 exon1 c.A48T p.A16A CCAGCCTGCAGTC . 56.0 12.0 64.0 0.0 . 24 . . Atlas-SNP KLC3 147700 hgsc.bcm.edu hg19 19 45853937 45853937 + Silent SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . KLC3 NM_177417 exon11 c.G1311A p.E437E CCGTGAGTCTATC . 159.0 37.0 184.0 0.0 . 37 . . Atlas-SNP ERCC1 2067 hgsc.bcm.edu hg19 19 45924624 45924624 + Missense_Mutation SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ERCC1 NM_001983 exon3 c.A133G p.S45G GAAGGCTCTGTGT . 74.0 10.0 74.0 0.0 . 46 . . Atlas-SNP ZC3H4 23211 hgsc.bcm.edu hg19 19 47569634 47569634 + Silent SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ZC3H4 NM_015168 exon15 c.G3891T p.T1297T GGAGGCCGTGGGG . 64.0 12.0 73.0 0.0 . 96 . . Atlas-SNP KCNA7 3743 hgsc.bcm.edu hg19 19 49574011 49574011 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . KCNA7 NM_031886 exon2 c.G680T p.R227L AGGAGGCGTACCA . 67.0 20.0 83.0 0.0 . 30 . . Atlas-SNP FPR1 2357 hgsc.bcm.edu hg19 19 52249985 52249985 + Missense_Mutation SNP C C A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . FPR1 NM_001193306 exon3 c.G263T p.G88V TGTCCTCCCATGG . 183.0 35.0 204.0 0.0 . 64 . . Atlas-SNP ZNF880 400713 hgsc.bcm.edu hg19 19 52887146 52887146 + Nonsense_Mutation SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . ZNF880 NM_001145434 exon4 c.A313T p.K105X TCTCTTAAAAATC . 109.0 6.0 93.0 0.0 . 45 . . Atlas-SNP DNAAF3 352909 hgsc.bcm.edu hg19 19 55670500 55670500 + Missense_Mutation SNP T T C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . . NM_001256714 exon12 c.A1757G p.E586G AGAACCTCTGAGA . 133.0 31.0 168.0 0.0 . . . . Atlas-SNP PHF20 51230 hgsc.bcm.edu hg19 20 34515736 34515736 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PHF20 NM_016436 exon14 c.G2039T p.C680F GGGTCTGCATGGG . 139.0 50.0 120.0 0.0 . 94 . . Atlas-SNP MATN4 8785 hgsc.bcm.edu hg19 20 43933399 43933399 + Missense_Mutation SNP C C T rs114313957 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MATN4 NM_030592 exon3 c.G112A p.V38M CAATCACGAACAC . 116.0 28.0 88.0 0.0 . 57 . C|0.987;G|0.013 Atlas-SNP DSCR3 10311 hgsc.bcm.edu hg19 21 38597864 38597864 + Missense_Mutation SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . DSCR3 NM_006052 exon8 c.T875A p.L292Q AGCTTCAGCGGGA . 106.0 20.0 120.0 0.0 . 21 . . Atlas-SNP SSTR3 6753 hgsc.bcm.edu hg19 22 37602722 37602722 + Missense_Mutation SNP A A T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . SSTR3 NM_001051 exon2 c.T1121A p.V374D TGGCTGACCCGGC . 58.0 16.0 89.0 0.0 . 42 . . Atlas-SNP PCDH19 57526 hgsc.bcm.edu hg19 X 99551540 99551540 + Missense_Mutation SNP G G T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PCDH19 NM_001184880 exon6 c.C3182A p.A1061E CTAATCGCCTCAC . 46.0 22.0 65.0 0.0 . 269 . . Atlas-SNP MAP7D3 79649 hgsc.bcm.edu hg19 X 135314089 135314089 + Missense_Mutation SNP C C G novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MAP7D3 NM_024597 exon8 c.G1027C p.V343L CGTCCACGCTCAC . 101.0 55.0 114.0 0.0 . 102 . . Atlas-SNP MAGEC2 51438 hgsc.bcm.edu hg19 X 141291370 141291370 + Missense_Mutation SNP G G A novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . MAGEC2 NM_016249 exon3 c.C404T p.S135F AAAGAGGACTCAC . 35.0 16.0 38.0 0.0 . 102 . . Atlas-SNP TMEM185A 84548 hgsc.bcm.edu hg19 X 148693147 148693147 + Splice_Site SNP C C A rs376945268 TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TMEM185A NM_032508 exon3 c.39-1G>T . AATTTACTAGGAG . 56.0 32.0 60.0 0.0 . 26 . . Atlas-SNP PCDH11Y 83259 hgsc.bcm.edu hg19 Y 4966401 4966401 + Missense_Mutation SNP G G C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . PCDH11Y NM_032972 exon2 c.G782C p.R261T CTCAAAGATCCAG . 162.0 21.0 284.0 0.0 . 163 . . Atlas-SNP HNRNPD 3184 hgsc.bcm.edu hg19 4 83278019 83278020 + Frame_Shift_Ins INS - - C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . HNRNPD NM_002138 exon6 c.783_784insG p.E261fs . . 132.0 23.0 175.0 0.0 . 23 . . Atlas-INDEL TET2 54790 hgsc.bcm.edu hg19 4 106155168 106155169 + Frame_Shift_Ins INS - - CA novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TET2 NM_001127208 exon3 c.69_70insCA p.P23fs . . 48.0 11.0 92.0 0.0 . 1762 . . Atlas-INDEL TET2 54790 hgsc.bcm.edu hg19 4 106155167 106155168 + Frame_Shift_Ins INS - - T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TET2 NM_001127208 exon3 c.68_69insT p.P23fs . . 47.0 11.0 89.0 0.0 . 1762 . . Atlas-INDEL CDC45 8318 hgsc.bcm.edu hg19 22 19492928 19492929 + Frame_Shift_Ins INS - - C novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . CDC45 NM_001178010 exon11 c.844_845insC p.S282fs . . 130.0 10.0 125.0 0.0 . 48 . . Atlas-INDEL TRIM4 89122 hgsc.bcm.edu hg19 7 99490170 99490171 + Frame_Shift_Ins INS - - T novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . TRIM4 NM_033017 exon7 c.1119_1120insA p.N373fs . . 139.0 18.0 139.0 0.0 . 33 . . Atlas-INDEL GPR128 84873 hgsc.bcm.edu hg19 3 100354665 100354810 + Frame_Shift_Del DEL CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG - novel TCGA-CC-A3M9-01A-11D-A20W-10 TCGA-CC-A3M9-10A-01D-A20W-10 CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a532b617-df73-4bc6-aa5f-40882defe2f0 0249fd94-5666-465e-9f4a-8c1f2bf0bbc6 . GPR128 NM_032787 exon5 c.591_597del p.197_199del . . 42.0 15.0 47.0 0.0 . 126 . . Pindel