Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm NRD1 4898 hgsc.bcm.edu hg19 1 52306079 52306079 + Missense_Mutation SNP T T A rs62648104 bycluster TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . NRD1 NM_001101662 exon2 c.A449T p.E150V TCTTCCTCCACCT . 314.0 44.0 311.0 0.0 . 89 . T|0.024;A|0.976 Atlas-SNP SEMA6C 10500 hgsc.bcm.edu hg19 1 151108527 151108527 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SEMA6C NM_001178061 exon13 c.C1219A p.P407T CAGGTGGTACAGC . 452.0 170.0 284.0 0.0 . 70 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158623173 158623173 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SPTA1 NM_003126 exon22 c.C3079A p.P1027T CAGCTGGGACAAT . 232.0 97.0 201.0 0.0 . 720 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 185970862 185970862 + Missense_Mutation SNP T T A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . HMCN1 NM_031935 exon28 c.T4337A p.I1446N TTAACATTGATGT . 189.0 46.0 234.0 0.0 . 797 . . Atlas-SNP OR2B11 127623 hgsc.bcm.edu hg19 1 247614391 247614391 + Silent SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . OR2B11 NM_001004492 exon1 c.T894C p.N298N ATCTTTATTTCTC . 186.0 28.0 202.0 0.0 . 102 . . Atlas-SNP ACP1 52 hgsc.bcm.edu hg19 2 277013 277013 + Silent SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ACP1 NM_007099 exon5 c.C327T p.T109T TAAAACCTGCAAA . 241.0 39.0 277.0 0.0 . 42 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1812887 1812887 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MYT1L NM_015025 exon22 c.G3127A p.G1043R GCTCTCCAGAAAG . 170.0 26.0 197.0 0.0 . 241 . . Atlas-SNP TTC27 55622 hgsc.bcm.edu hg19 2 32859027 32859027 + Silent SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TTC27 NM_017735 exon3 c.C351T p.H117H CTTACACCCTCAG . 461.0 74.0 456.0 0.0 . 71 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141812802 141812802 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . LRP1B NM_018557 exon10 c.C1435T p.P479S CATATGGATCGAC . 167.0 22.0 167.0 0.0 . 1315 . . Atlas-SNP COBLL1 22837 hgsc.bcm.edu hg19 2 165551580 165551580 + Missense_Mutation SNP T T A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . COBLL1 NM_014900 exon12 c.A2436T p.K812N AGTTTCTTTCACA . 324.0 60.0 396.0 0.0 . 122 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179395002 179395002 + Missense_Mutation SNP G G C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TTN NM_001267550 exon358 c.C106340G p.P35447R GGCCGGGGTTCTC . 134.0 21.0 131.0 0.0 . 18412 . . Atlas-SNP TNP1 7141 hgsc.bcm.edu hg19 2 217724619 217724619 + Missense_Mutation SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TNP1 NM_003284 exon1 c.G139T p.A47S ACTCACCGTCATC . 226.0 37.0 221.0 0.0 . 10 . . Atlas-SNP PRRT3 285368 hgsc.bcm.edu hg19 3 9991578 9991578 + Silent SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . PRRT3 NM_207351 exon2 c.T222C p.D74D GCGGACATCAGAG . 120.0 25.0 90.0 0.0 . 35 . . Atlas-SNP TCAIM 285343 hgsc.bcm.edu hg19 3 44449032 44449032 + Missense_Mutation SNP T T G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . . NM_173826 exon11 c.T1349G p.V450G AAATGGTGGATTG . 362.0 56.0 376.0 0.0 . . . . Atlas-SNP PIK3CB 5291 hgsc.bcm.edu hg19 3 138426053 138426053 + Missense_Mutation SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . PIK3CB NM_006219 exon9 c.T1478C p.V493A AATTTAACATGCA . 265.0 34.0 256.0 0.0 . 103 . . Atlas-SNP TRIM42 287015 hgsc.bcm.edu hg19 3 140401304 140401304 + Silent SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TRIM42 NM_152616 exon2 c.C342A p.S114S TTTCAGCTCCAAG . 118.0 15.0 111.0 0.0 . 143 . . Atlas-SNP CP 1356 hgsc.bcm.edu hg19 3 148923993 148923993 + Missense_Mutation SNP T T C rs201036476 TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . CP NM_000096 exon6 c.A1170G p.I390M GATGTCTATACCA . 253.0 62.0 267.0 0.0 . 112 . T|0.999;C|0.001 Atlas-SNP MME 4311 hgsc.bcm.edu hg19 3 154890002 154890002 + Splice_Site SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MME NM_000902 exon21 c.2076+1G>T . GCACAGGTATTGT . 827.0 132.0 1098.0 0.0 . 133 . . Atlas-SNP EIF4G1 1981 hgsc.bcm.edu hg19 3 184045645 184045645 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . EIF4G1 NM_001194946 exon27 c.G3829A p.A1277T GAGCTGGCCTCAC . 109.0 33.0 106.0 0.0 . 151 . . Atlas-SNP EPHA5 2044 hgsc.bcm.edu hg19 4 66361224 66361224 + Silent SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . EPHA5 NM_004439 exon4 c.C948T p.I316I GCTCTGGATGTGA . 208.0 37.0 216.0 0.0 . 315 . . Atlas-SNP MUC7 4589 hgsc.bcm.edu hg19 4 71346814 71346814 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MUC7 NM_001145007 exon4 c.C353T p.S118L TCCCATCAGCTTC . 160.0 31.0 171.0 0.0 . 91 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79328918 79328918 + Nonsense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . FRAS1 NM_001166133 exon31 c.C4231T p.Q1411X TTCACCCAGCAGG . 207.0 27.0 162.0 0.0 . 779 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79455713 79455713 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . FRAS1 NM_025074 exon71 c.C11036T p.P3679L TGGATCCCAATAC . 133.0 20.0 133.0 0.0 . 779 . . Atlas-SNP BANK1 55024 hgsc.bcm.edu hg19 4 102712095 102712095 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . BANK1 NM_001127507 exon1 c.C58T p.P20S TGCGGCCCAGCGC . 22.0 13.0 4.0 0.0 . 95 . . Atlas-SNP TACR3 6870 hgsc.bcm.edu hg19 4 104640417 104640417 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TACR3 NM_001059 exon1 c.C416A p.T139K ACCAACGTGTTGA . 128.0 17.0 128.0 0.0 . 102 . . Atlas-SNP NDST3 9348 hgsc.bcm.edu hg19 4 119154261 119154261 + Silent SNP T T C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . NDST3 NM_004784 exon9 c.T1914C p.N638N CTTTAATAGAAAT . 238.0 45.0 234.0 0.0 . 107 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155226013 155226013 + Nonsense_Mutation SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . DCHS2 NM_017639 exon17 c.G4048T p.G1350X GGAATCCCCCATC . 314.0 47.0 409.0 0.0 . 594 . . Atlas-SNP PCDHA6 56142 hgsc.bcm.edu hg19 5 140210049 140210049 + Silent SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . PCDHA6 NM_018909 exon1 c.A2373G p.L791L GGATTTAAATGAA . 153.0 12.0 133.0 0.0 . 442 . . Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140432442 140432442 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . PCDHB1 NM_013340 exon1 c.G1387A p.E463K GTTCGAGAAAACA . 147.0 23.0 146.0 0.0 . 148 . . Atlas-SNP PCDHGA6 56109 hgsc.bcm.edu hg19 5 140753695 140753695 + Silent SNP G G T rs376765941 TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . PCDHGA6 NM_018919 exon1 c.G45T p.L15L GGTCCTGCTCCTC . 176.0 47.0 122.0 0.0 . 219 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38781906 38781906 + Splice_Site SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . DNAH8 NM_001206927 exon25 c.3333+1G>T . AATGTGGTAAGTA . 146.0 21.0 147.0 0.0 . 1239 . . Atlas-SNP EPHA7 2045 hgsc.bcm.edu hg19 6 94124469 94124469 + Silent SNP A A T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . EPHA7 NM_004440 exon2 c.T114A p.S38S TGCTTTAGAATCC . 71.0 10.0 97.0 0.0 . 251 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152674871 152674871 + Missense_Mutation SNP G G T rs201704617 bycluster;alternate_allele TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SYNE1 NM_182961 exon68 c.C10935A p.H3645Q TTCTTCGTGCCAC . 132.0 21.0 122.0 0.0 . 3227 . G|0.999;A|0.001 Atlas-SNP INTS1 26173 hgsc.bcm.edu hg19 7 1517435 1517435 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . INTS1 NM_001080453 exon34 c.G4768A p.E1590K CCTCCTCCTGCAG . 165.0 21.0 93.0 0.0 . 145 . . Atlas-SNP ITGB8 3696 hgsc.bcm.edu hg19 7 20445703 20445703 + Silent SNP T T A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ITGB8 NM_002214 exon12 c.T1932A p.L644L ATGCCTTCACCCT . 141.0 25.0 145.0 0.0 . 159 . . Atlas-SNP PDE1C 5137 hgsc.bcm.edu hg19 7 31877505 31877505 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 PDE1C_ENST00000396193,NS,carcinoma,0,3 PDE1C NM_001191058 exon11 c.C1241T p.T414I AGAGCAGTCTTCA . 117.0 11.0 109.0 1.0 . 465 . . Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87196165 87196165 + Missense_Mutation SNP T T A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ABCB1 NM_000927 exon7 c.A466T p.M156L GTCGCATTATAGC . 133.0 23.0 147.0 0.0 . 263 . . Atlas-SNP SLC13A1 6561 hgsc.bcm.edu hg19 7 122787291 122787291 + Missense_Mutation SNP G G C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SLC13A1 NM_022444 exon7 c.C734G p.A245G GAGTAGGCAATGC . 168.0 29.0 163.0 0.0 . 110 . . Atlas-SNP NUP205 23165 hgsc.bcm.edu hg19 7 135269705 135269705 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . NUP205 NM_015135 exon8 c.C1168T p.R390C TATATTCGCAGAG . 153.0 18.0 161.0 0.0 . 198 . . Atlas-SNP DPP6 1804 hgsc.bcm.edu hg19 7 154263941 154263941 + Silent SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . DPP6 NM_130797 exon5 c.C567T p.A189A AAGAGCCATCAGA . 127.0 15.0 185.0 0.0 . 383 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3081364 3081364 + Silent SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . CSMD1 NM_033225 exon28 c.C4371A p.G1457G TGCTGGGCCCGTC . 169.0 18.0 188.0 0.0 . 1469 . . Atlas-SNP MYBL1 4603 hgsc.bcm.edu hg19 8 67492397 67492397 + Missense_Mutation SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MYBL1 NM_001080416 exon9 c.T1072C p.F358L CTGCAAATTCTGG . 206.0 20.0 111.0 0.0 . 73 . . Atlas-SNP DDX31 64794 hgsc.bcm.edu hg19 9 135537950 135537950 + Missense_Mutation SNP C C T rs367667543 TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . DDX31 NM_022779 exon2 c.G523A p.A175T TTTGTGCGTTCCC . 271.0 22.0 319.0 0.0 . 76 . . Atlas-SNP EPC1 80314 hgsc.bcm.edu hg19 10 32582635 32582635 + Missense_Mutation SNP T T C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . EPC1 NM_025209 exon3 c.A344G p.Y115C AAATCATAATCAG . 260.0 37.0 210.0 0.0 . 74 . . Atlas-SNP ANO9 338440 hgsc.bcm.edu hg19 11 418530 418530 + Silent SNP C C T rs369737399 TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ANO9 NM_001012302 exon23 c.G2190A p.S730S CTTCACCGACTGA . 137.0 15.0 139.0 0.0 . 61 . . Atlas-SNP OR5D13 390142 hgsc.bcm.edu hg19 11 55541610 55541610 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . OR5D13 NM_001001967 exon1 c.G697A p.A233T CGATCTGCAAGTG . 189.0 17.0 170.0 0.0 . 96 . . Atlas-SNP BTBD18 643376 hgsc.bcm.edu hg19 11 57512606 57512606 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . BTBD18 NM_001145101 exon3 c.C1139A p.T380N TCTTGAGTGTTTT . 106.0 9.0 91.0 0.0 . 26 . . Atlas-SNP FAM111B 374393 hgsc.bcm.edu hg19 11 58893210 58893210 + Missense_Mutation SNP T T G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . FAM111B NM_198947 exon4 c.T1640G p.I547S ATGCCATTTTAAA . 69.0 14.0 90.0 0.0 . 84 . . Atlas-SNP MYRF 745 hgsc.bcm.edu hg19 11 61537931 61537931 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . . NM_001127392 exon5 c.C674T p.P225L TGGTGCCCACTGA . 363.0 37.0 278.0 0.0 . . . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92085831 92085831 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 FAT3_ENST00000409404,NS,carcinoma,0,2 FAT3 NM_001008781 exon1 c.G553T p.A185S ACAGACGCAGATA . 86.0 14.0 108.0 0.0 . 1822 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105842667 105842667 + Missense_Mutation SNP A A C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . GRIA4 NM_000829 exon15 c.A2321C p.K774T TTTTGAAACTCAG . 201.0 40.0 164.0 0.0 . 380 . . Atlas-SNP NTF3 4908 hgsc.bcm.edu hg19 12 5603521 5603521 + Silent SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . NTF3 NM_001102654 exon2 c.G180A p.K60K AAACAAGCTCTCC . 54.0 10.0 68.0 0.0 . 50 . . Atlas-SNP SLC2A14 144195 hgsc.bcm.edu hg19 12 7967043 7967043 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SLC2A14 NM_153449 exon12 c.C1432T p.R478C TGCCACGGGTCTC . 195.0 15.0 202.0 0.0 . 78 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28883065 28883065 + Splice_Site SNP C C G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . FLT1 NM_002019 exon29 c.3636-1G>C . ACGTATCTAATGA . 67.0 8.0 71.0 0.0 . 393 . . Atlas-SNP DACH1 1602 hgsc.bcm.edu hg19 13 72204825 72204825 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . DACH1 NM_080759 exon3 c.C995A p.A332D GCAGCAGCTGCTG . 118.0 39.0 100.0 0.0 . 123 . . Atlas-SNP ATG14 22863 hgsc.bcm.edu hg19 14 55848812 55848812 + Nonsense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ATG14 NM_014924 exon6 c.C745T p.R249X CCCATCGTCCTGA . 397.0 83.0 429.0 0.0 . 36 . . Atlas-SNP TP53BP1 7158 hgsc.bcm.edu hg19 15 43749109 43749109 + Missense_Mutation SNP G G C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TP53BP1 NM_001141980 exon12 c.C1697G p.P566R TCAGCAGGAACAA . 174.0 34.0 204.0 0.0 . 157 . . Atlas-SNP BNC1 646 hgsc.bcm.edu hg19 15 83926506 83926506 + Silent SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . BNC1 NM_001717 exon5 c.T2673C p.D891D GTTCCCATCACTG . 90.0 23.0 84.0 0.0 . 149 . . Atlas-SNP SOLH 6650 hgsc.bcm.edu hg19 16 601376 601376 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SOLH NM_005632 exon8 c.G2141A p.R714H GCCTGCGCCCCCG . 44.0 7.0 28.0 0.0 . 47 . . Atlas-SNP HYDIN 54768 hgsc.bcm.edu hg19 16 70884548 70884548 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . HYDIN NM_001270974 exon74 c.G12454A p.D4152N AAATATCAATTGG . 134.0 20.0 162.0 0.0 . 788 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578555 7578555 + Splice_Site SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 TP53_ENST00000545858,NS,carcinoma,0,58 TP53 NM_000546 exon6 c.376-1G>A . GGAGTACTGTAGG . 50.0 8.0 56.0 0.0 . 33396 . . Atlas-SNP KRT14 3861 hgsc.bcm.edu hg19 17 39742690 39742690 + Missense_Mutation SNP C C T rs61027685 bycluster TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . KRT14 NM_000526 exon1 c.G397A p.V133M CACGCACCTTGTC . 225.0 48.0 200.0 0.0 . 65 . . Atlas-SNP CNTD1 124817 hgsc.bcm.edu hg19 17 40961398 40961398 + Missense_Mutation SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . CNTD1 NM_173478 exon7 c.C838A p.Q280K CATTTGCAGAGCA . 220.0 42.0 207.0 0.0 . 22 . . Atlas-SNP CDR2L 30850 hgsc.bcm.edu hg19 17 72998268 72998268 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 HUMPPA,NS,carcinoma,0,1 . NM_014603 exon4 c.C451T p.R151C CGGGAACGCAGGC . 80.0 18.0 39.0 0.0 . . . . Atlas-SNP LLGL2 3993 hgsc.bcm.edu hg19 17 73569581 73569581 + Silent SNP C C G rs144386071 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . LLGL2 NM_004524 exon21 c.C2745G p.P915P CTCACCCTCGGAG . 254.0 40.0 224.0 0.0 . 155 . C|0.997;T|0.003 Atlas-SNP ARHGEF18 23370 hgsc.bcm.edu hg19 19 7505118 7505118 + Missense_Mutation SNP T T A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ARHGEF18 NM_001130955 exon1 c.T292A p.S98T CTGACCTCCAAGA . 111.0 17.0 109.0 0.0 . 129 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9024161 9024161 + Missense_Mutation SNP T T A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MUC16 NM_024690 exon18 c.A37111T p.T12371S ATGGAGTCCCTGA . 241.0 21.0 254.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9048324 9048324 + Missense_Mutation SNP T T G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MUC16 NM_024690 exon5 c.A33307C p.T11103P AACTAGTGACCAG . 136.0 21.0 158.0 0.0 . 4315 . . Atlas-SNP ZNF253 56242 hgsc.bcm.edu hg19 19 20002465 20002465 + Missense_Mutation SNP A A T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ZNF253 NM_021047 exon4 c.A409T p.T137S TGTTTGACAACTA . 163.0 27.0 236.0 0.0 . 99 . . Atlas-SNP TRIM28 10155 hgsc.bcm.edu hg19 19 59059680 59059680 + Missense_Mutation SNP G G A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TRIM28 NM_005762 exon8 c.G1121A p.R374Q TGCACCGGGCCCT . 129.0 34.0 121.0 0.0 . 46 . . Atlas-SNP TGM3 7053 hgsc.bcm.edu hg19 20 2321189 2321189 + Missense_Mutation SNP G G T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . TGM3 NM_003245 exon13 c.G2044T p.A682S TTCCCTGCAATCA . 141.0 12.0 122.0 0.0 . 105 . . Atlas-SNP SPATA2 9825 hgsc.bcm.edu hg19 20 48523374 48523374 + Silent SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SPATA2 NM_006038 exon3 c.G345T p.T115T AGGGCCCGTGTAG . 242.0 22.0 186.0 0.0 . 36 . . Atlas-SNP CSNK1E 1454 hgsc.bcm.edu hg19 22 38696748 38696748 + Missense_Mutation SNP G G C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . CSNK1E NM_001894 exon5 c.C546G p.I182M CGTGTTGATGGAA . 289.0 77.0 353.0 0.0 . 143 . . Atlas-SNP MAGEC3 139081 hgsc.bcm.edu hg19 X 140985121 140985121 + Missense_Mutation SNP A A G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MAGEC3 NM_138702 exon7 c.A1577G p.E526G TCTTTGAAGACAC . 44.0 22.0 75.0 0.0 . 228 . . Atlas-SNP GABRQ 55879 hgsc.bcm.edu hg19 X 151821044 151821044 + Missense_Mutation SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . GABRQ NM_018558 exon9 c.C1199A p.P400H CTCTCCCCATCAC . 169.0 66.0 159.0 0.0 . 131 . . Atlas-SNP MPP1 4354 hgsc.bcm.edu hg19 X 154013425 154013425 + Missense_Mutation SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MPP1 NM_002436 exon7 c.G685A p.A229T TACTTGCCACTCG . 70.0 30.0 65.0 0.0 . 52 . . Atlas-SNP IL9R 3581 hgsc.bcm.edu hg19 X 155239667 155239667 + Missense_Mutation SNP C C A novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . IL9R NM_002186 exon9 c.C1159A p.L387M GGGAACCTGAGCT . 330.0 38.0 247.0 0.0 . 73 . . Atlas-SNP ND4L 0 hgsc.bcm.edu hg19 MT 10531 10531 + Missense_Mutation SNP T T C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . . ENST00000361335 exon1 c.T62C p.V21A TACTAGTATATCG . 161.0 106.0 195.0 0.0 . . . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11170 11170 + Silent SNP C C T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . . ENST00000361381 exon1 c.C411T p.G137G ATGAGGCAACCAG . 194.0 56.0 196.0 0.0 . . . . Atlas-SNP GAB2 9846 hgsc.bcm.edu hg19 11 77932827 77932828 + Splice_Site INS - - G novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . GAB2 NM_080491 exon9 c.1659-2->C . . . 336.0 22.0 353.0 0.0 . 63 . . Atlas-INDEL SLC9A3 6550 hgsc.bcm.edu hg19 5 488534 488535 + Frame_Shift_Ins INS - - C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SLC9A3 NM_004174 exon3 c.572_573insG p.V191fs . . 135.0 11.0 94.0 0.0 . 89 . . Atlas-INDEL CAPN14 440854 hgsc.bcm.edu hg19 2 31399956 31399957 + Frame_Shift_Ins INS - - GC novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . CAPN14 NM_001145122 exon20 c.1908_1909insGC p.G636fs . . 176.0 13.0 133.0 0.0 . 36 . . Atlas-INDEL AXIN2 8313 hgsc.bcm.edu hg19 17 63545764 63545765 + Frame_Shift_Del DEL CT CT - novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 AXIN2,rectum,carcinoma,0,1 AXIN2 NM_004655 exon3 c.830_831del p.277_277del . . 92.0 14.0 123.0 0.0 . 92 . . Atlas-Indel,Pindel MTOR 2475 hgsc.bcm.edu hg19 1 11264717 11264718 + Frame_Shift_Ins INS - - C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . MTOR NM_004958 exon26 c.3845_3846insG p.E1282fs . . 210.0 13.0 191.0 0.0 . 327 . . Atlas-INDEL VGLL4 9686 hgsc.bcm.edu hg19 3 11606425 11606426 + Frame_Shift_Del DEL GC GC - novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . VGLL4 NM_001128219 exon3 c.341_342del p.114_114del . . 104.0 11.0 80.0 0.0 . 47 . . Atlas-INDEL SCNN1D 6339 hgsc.bcm.edu hg19 1 1222261 1222262 + Frame_Shift_Ins INS - - C novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . SCNN1D NM_001130413 exon8 c.1025_1026insC p.V342fs . . 171.0 12.0 131.0 0.0 . 60 . . Atlas-INDEL DENND5B 160518 hgsc.bcm.edu hg19 12 31605091 31605092 + Frame_Shift_Ins INS - - T novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . DENND5B NM_144973 exon5 c.1412_1413insA p.M471fs . . 269.0 42.0 227.0 0.0 . 114 . . Atlas-Indel,Pindel NR2F2 7026 hgsc.bcm.edu hg19 15 96875607 96875608 + Frame_Shift_Del DEL CG CG - novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . NR2F2 NM_021005 exon1 c.272_273del p.91_91del . . 100.0 15.0 100.0 0.0 . 35 . . Atlas-Indel,Pindel ZDBF2 57683 hgsc.bcm.edu hg19 2 207170909 207170909 + Frame_Shift_Del DEL C C - novel TCGA-CC-A1HT-01A-11D-A12Z-10 TCGA-CC-A1HT-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b25a78f-20dc-4ccc-b4c0-f9885d16725d 0255f601-3be9-4059-9d36-7f666977eff0 . ZDBF2 NM_020923 exon5 c.1656delA p.R552fs . . 98.0 10.0 99.0 0.0 . 531 . . Pindel