Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PRDM16 63976 hgsc.bcm.edu hg19 1 3342300 3342300 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PRDM16 NM_022114 exon13 c.A3095T p.H1032L ACGAGCACGAGAA . 114.0 38.0 44.0 0.0 . 147 . . Atlas-SNP MASP2 10747 hgsc.bcm.edu hg19 1 11107262 11107262 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . MASP2 NM_139208 exon1 c.G3A p.M1I CTACCTCATGGTG . 112.0 36.0 47.0 0.0 . 71 . . Atlas-SNP SRM 6723 hgsc.bcm.edu hg19 1 11119332 11119332 + Nonsense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . SRM NM_003132 exon2 c.C238T p.Q80X TCTCCTGGTAGGA . 337.0 95.0 98.0 0.0 . 18 . . Atlas-SNP TMEM82 388595 hgsc.bcm.edu hg19 1 16073479 16073479 + Missense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . TMEM82 NM_001013641 exon5 c.T875A p.L292H GCATCCTTGTCTC . 400.0 114.0 159.0 0.0 . 30 . . Atlas-SNP FBXO42 54455 hgsc.bcm.edu hg19 1 16577289 16577289 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . FBXO42 NM_018994 exon10 c.G2030T p.S677I TGCAGGCTGGTTT . 393.0 133.0 236.0 0.0 . 53 . . Atlas-SNP RCC1 1104 hgsc.bcm.edu hg19 1 28863318 28863318 + Missense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . RCC1 NM_001048194 exon10 c.G1090A p.E364K GGTGCTGAGGAGA . 264.0 149.0 97.0 0.0 . 61 . . Atlas-SNP RBM8A 9939 hgsc.bcm.edu hg19 1 145508934 145508934 + Missense_Mutation SNP T T C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . RBM8A NM_005105 exon5 c.T361C p.Y121H GTTGAATATGAAA . 483.0 184.0 215.0 0.0 . 18 . . Atlas-SNP IFI16 3428 hgsc.bcm.edu hg19 1 159015214 159015214 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . IFI16 NM_001206567 exon7 c.A1289T p.Q430L CTCCTCAGATGCC . 1731.0 213.0 1314.0 0.0 . 111 . . Atlas-SNP KISS1 3814 hgsc.bcm.edu hg19 1 204159887 204159887 + Nonsense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KISS1 NM_002256 exon3 c.G142T p.E48X TCTGCTCCCCGGG . 101.0 50.0 26.0 0.0 . 6 . . Atlas-SNP LAMB3 3914 hgsc.bcm.edu hg19 1 209789918 209789918 + Nonsense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . LAMB3 NM_000228 exon22 c.C3280T p.Q1094X AACTCTGACCCAA . 631.0 221.0 166.0 0.0 . 136 . . Atlas-SNP GUK1 2987 hgsc.bcm.edu hg19 1 228336430 228336430 + Silent SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . GUK1 NM_001242840 exon7 c.C603T p.P201P CGGGCCCATACAG . 101.0 50.0 20.0 0.0 . 34 . . Atlas-SNP EXO1 9156 hgsc.bcm.edu hg19 1 242045224 242045224 + Missense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . EXO1 NM_006027 exon12 c.G2116A p.D706N GAATCTGATTGCA . 210.0 77.0 467.0 1.0 . 103 . . Atlas-SNP ADAM17 6868 hgsc.bcm.edu hg19 2 9667941 9667941 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ADAM17 NM_003183 exon5 c.G593A p.G198E ACTAACCCTTTTG . 92.0 28.0 155.0 0.0 . 61 . . Atlas-SNP TRMT61B 55006 hgsc.bcm.edu hg19 2 29092901 29092901 + Silent SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . TRMT61B NM_017910 exon1 c.T243C p.C81C CGAAAGACATCCA . 311.0 152.0 86.0 0.0 . 28 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141250227 141250227 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . LRP1B NM_018557 exon57 c.G9070A p.E3024K TTATCTCATGATG . 59.0 15.0 113.0 0.0 . 1315 . . Atlas-SNP FAM124B 79843 hgsc.bcm.edu hg19 2 225266346 225266346 + Missense_Mutation SNP C C G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 FAM124B_ENST00000409685,NS,carcinoma,0,2 FAM124B NM_024785 exon1 c.G140C p.R47P CTGGCCCGTTCAG . 65.0 53.0 59.0 0.0 . 71 . . Atlas-SNP GLB1 2720 hgsc.bcm.edu hg19 3 33106973 33106973 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . GLB1 NM_001135602 exon3 c.G322A p.A108T AACTGGCCCTCCA . 428.0 230.0 314.0 0.0 . 51 . . Atlas-SNP SLC22A14 9389 hgsc.bcm.edu hg19 3 38347844 38347844 + Silent SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . SLC22A14 NM_004803 exon1 c.C327T p.H109H CCCCCACCTGTCC . 273.0 20.0 115.0 0.0 . 64 . . Atlas-SNP DENND6A 201627 hgsc.bcm.edu hg19 3 57678508 57678508 + Splice_Site SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . . NM_152678 exon2 c.237+1G>T . GCCTCACCTCCAC . 48.0 29.0 16.0 0.0 . . . . Atlas-SNP DENND6A 201627 hgsc.bcm.edu hg19 3 57678509 57678509 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . . NM_152678 exon1 c.G237T p.E79D CCTCACCTCCACG . 52.0 31.0 17.0 0.0 . . . . Atlas-SNP KY 339855 hgsc.bcm.edu hg19 3 134369796 134369796 + Silent SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KY NM_178554 exon1 c.C7T p.L3L TCTTCAGCTCCAT . 325.0 85.0 138.0 0.0 . 92 . . Atlas-SNP PLS1 5357 hgsc.bcm.edu hg19 3 142405170 142405170 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PLS1 NM_001172312 exon9 c.A933T p.K311N CCCTAAAGGTGGG . 116.0 32.0 87.0 0.0 . 71 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 156009791 156009791 + Missense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KCNAB1 NM_172159 exon1 c.T95A p.V32E CCAATGTGGTGAA . 313.0 27.0 141.0 0.0 . 176 . . Atlas-SNP TLR1 7096 hgsc.bcm.edu hg19 4 38799406 38799406 + Silent SNP C C A rs375416156 alternate_allele TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 TLR1,right_upper_lobe,carcinoma,0,1 TLR1 NM_003263 exon4 c.G1047T p.P349P CAGGAACGGGCTA . 79.0 16.0 84.0 0.0 . 70 . . Atlas-SNP YIPF7 285525 hgsc.bcm.edu hg19 4 44631480 44631480 + Silent SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . YIPF7 NM_182592 exon4 c.T438C p.N146N CGTTTCATTCATA . 104.0 58.0 158.0 0.0 . 33 . . Atlas-SNP GABRA4 2557 hgsc.bcm.edu hg19 4 46930408 46930408 + Nonsense_Mutation SNP G G T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . GABRA4 NM_000809 exon9 c.C1499A p.S500X GTAGCTGACAACT . 99.0 63.0 196.0 1.0 . 129 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55599301 55599301 + Nonsense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KIT NM_000222 exon17 c.T2427A p.C809X GATTTGTGATTTT . 82.0 17.0 174.0 0.0 . 7396 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123268886 123268886 + Missense_Mutation SNP G G C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KIAA1109 NM_015312 exon74 c.G13081C p.A4361P TCCCCAGCTTCCA . 60.0 17.0 138.0 0.0 . 424 . . Atlas-SNP FAM198B 51313 hgsc.bcm.edu hg19 4 159048703 159048703 + Silent SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . FAM198B NM_001031700 exon6 c.T1440A p.S480S AAACAGAGACTGA . 76.0 64.0 134.0 0.0 . 134 . . Atlas-SNP HAND2 9464 hgsc.bcm.edu hg19 4 174450187 174450187 + Missense_Mutation SNP G G T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . HAND2 NM_021973 exon1 c.C254A p.P85Q GCGCCCGGCGGCA . 22.0 22.0 7.0 0.0 . 25 . . Atlas-SNP ZDHHC11 79844 hgsc.bcm.edu hg19 5 837587 837587 + Nonsense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZDHHC11 NM_024786 exon6 c.A793T p.K265X TCATCTTCTTGGC . 1986.0 262.0 491.0 0.0 . 97 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37186475 37186475 + Missense_Mutation SNP C C A rs373443151 alternate_allele TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . C5orf42 NM_023073 exon24 c.G4102T p.A1368S GAAATGCTTTCAC . 567.0 136.0 217.0 0.0 . 422 . . Atlas-SNP ERAP2 64167 hgsc.bcm.edu hg19 5 96219543 96219543 + Missense_Mutation SNP T T C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ERAP2 NM_001130140 exon3 c.T623C p.F208S TGGCTTTCCCTTG . 175.0 149.0 250.0 0.0 . 77 . . Atlas-SNP SH3TC2 79628 hgsc.bcm.edu hg19 5 148411195 148411195 + Nonsense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . SH3TC2 NM_024577 exon9 c.G1057T p.G353X CACTTCCCAGGGC . 153.0 131.0 103.0 0.0 . 178 . . Atlas-SNP RANBP17 64901 hgsc.bcm.edu hg19 5 170610173 170610173 + Missense_Mutation SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . RANBP17 NM_022897 exon17 c.A1868G p.Y623C TTACTTATATCCT . 56.0 44.0 288.0 0.0 . 108 . . Atlas-SNP OR2W1 26692 hgsc.bcm.edu hg19 6 29012335 29012335 + Silent SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . OR2W1 NM_030903 exon1 c.T618A p.I206I GAGGACAATTATA . 257.0 77.0 226.0 0.0 . 36 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138550956 138550956 + Silent SNP T T C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KIAA1244 NM_020340 exon5 c.T387C p.D129D ATTTGATCTGAAT . 406.0 181.0 302.0 0.0 . 236 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157502282 157502282 + Silent SNP C C G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ARID1B NM_020732 exon12 c.C3315G p.V1105V CTACGTCTGCGTC . 111.0 40.0 40.0 0.0 . 320 . . Atlas-SNP SHFM1 7979 hgsc.bcm.edu hg19 7 96324155 96324155 + Missense_Mutation SNP T T G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 SHFM1,NS,carcinoma,0,1 SHFM1 NM_006304 exon2 c.A125C p.N42T TCCCAATTATCCT . 147.0 17.0 143.0 0.0 . 12 . . Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107836240 107836240 + Silent SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . NRCAM NM_001037132 exon12 c.T1428C p.C476C GAAGGCACAGTCT . 359.0 177.0 223.0 0.0 . 267 . . Atlas-SNP PNPLA8 50640 hgsc.bcm.edu hg19 7 108155899 108155899 + Missense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PNPLA8 NM_001256008 exon2 c.C37T p.L13F TAAGGAGGTAAAT . 82.0 43.0 87.0 0.0 . 82 . . Atlas-SNP AASS 10157 hgsc.bcm.edu hg19 7 121756964 121756964 + Silent SNP G G C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . AASS NM_005763 exon7 c.C735G p.P245P TTCATGGGGCTCC . 118.0 19.0 94.0 0.0 . 123 . . Atlas-SNP TACC1 6867 hgsc.bcm.edu hg19 8 38678084 38678084 + Missense_Mutation SNP G G C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . TACC1 NM_006283 exon3 c.G1322C p.C441S ACTTTTGTTCTCC . 60.0 10.0 16.0 0.0 . 98 . . Atlas-SNP ZMAT4 79698 hgsc.bcm.edu hg19 8 40683185 40683185 + Missense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZMAT4 NM_024645 exon2 c.C11T p.S4F ATATCGGAGGACT . 87.0 37.0 35.0 0.0 . 47 . . Atlas-SNP OPRK1 4986 hgsc.bcm.edu hg19 8 54147486 54147486 + Missense_Mutation SNP G G C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . OPRK1 NM_000912 exon3 c.C443G p.T148S GTCAAGGTGAAGA . 225.0 64.0 99.0 0.0 . 90 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68934295 68934295 + Missense_Mutation SNP G G C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PREX2 NM_025170 exon4 c.G361C p.E121Q TATGATGAATATT . 43.0 16.0 75.0 0.0 . 614 . . Atlas-SNP DCAF4L2 138009 hgsc.bcm.edu hg19 8 88886016 88886016 + Missense_Mutation SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . DCAF4L2 NM_152418 exon1 c.C184T p.H62Y AGCTATGAATCTG . 544.0 271.0 199.0 0.0 . 187 . . Atlas-SNP OR13D1 286365 hgsc.bcm.edu hg19 9 107457698 107457698 + Silent SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . OR13D1 NM_001004484 exon1 c.T996A p.A332A AGAGGCTGTAAAG . 131.0 36.0 122.0 0.0 . 42 . . Atlas-SNP ZNF462 58499 hgsc.bcm.edu hg19 9 109687219 109687219 + Silent SNP T T G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZNF462 NM_021224 exon3 c.T1026G p.S342S CATGTCTTACCCT . 197.0 35.0 54.0 0.0 . 322 . . Atlas-SNP PKN3 29941 hgsc.bcm.edu hg19 9 131476850 131476850 + Silent SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PKN3 NM_013355 exon12 c.G1491A p.L497L TTTCCTGCCCAAG . 275.0 111.0 89.0 0.0 . 62 . . Atlas-SNP LAMC3 10319 hgsc.bcm.edu hg19 9 133948175 133948175 + Missense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . LAMC3 NM_006059 exon19 c.T3370A p.S1124T CTGGAGTCCTCGG . 283.0 127.0 94.0 0.0 . 167 . . Atlas-SNP MCM10 55388 hgsc.bcm.edu hg19 10 13239672 13239672 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . MCM10 NM_182751 exon15 c.C2027T p.T676I CAAAAACAAACCC . 287.0 118.0 148.0 0.0 . 76 . . Atlas-SNP CCDC6 8030 hgsc.bcm.edu hg19 10 61572436 61572436 + Missense_Mutation SNP T T G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . CCDC6 NM_005436 exon5 c.A804C p.E268D TTCCACTTCATTC . 96.0 82.0 153.0 0.0 . 44 . . Atlas-SNP OR10A2 341276 hgsc.bcm.edu hg19 11 6891293 6891293 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . OR10A2 NM_001004460 exon1 c.C308T p.A103V TCCTGGCTACCAT . 265.0 114.0 134.0 0.0 . 55 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43833853 43833853 + Silent SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ADAMTS20 NM_025003 exon17 c.G2310T p.G770G AAAATTCCCTTCA . 38.0 16.0 45.0 0.0 . 635 . . Atlas-SNP SCN8A 6334 hgsc.bcm.edu hg19 12 52056826 52056826 + Silent SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . SCN8A NM_014191 exon2 c.C225T p.G75G CCAAGGCCTGGTT . 254.0 123.0 151.0 0.0 . 331 . . Atlas-SNP KRT6C 286887 hgsc.bcm.edu hg19 12 52863028 52863028 + Missense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KRT6C NM_173086 exon9 c.A1513T p.S505C AGCCACTGCCGAC . 135.0 29.0 72.0 0.0 . 55 . . Atlas-SNP HOXC8 3224 hgsc.bcm.edu hg19 12 54405067 54405067 + Missense_Mutation SNP G G T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . HOXC8 NM_022658 exon2 c.G631T p.D211Y AACAAGGATAAAC . 146.0 33.0 43.0 0.0 . 15 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124829344 124829344 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 NCOR2_ENST00000405201,NS,carcinoma,0,2 NCOR2 NM_006312 exon34 c.G4513A p.E1505K TCTCCTCGTAGCA . 72.0 18.0 17.0 0.0 . 475 . . Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 128899692 128899692 + Silent SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . TMEM132C NM_001136103 exon2 c.G501A p.L167L GAAGCTGCCATGC . 156.0 26.0 60.0 0.0 . 142 . . Atlas-SNP MAP4K5 11183 hgsc.bcm.edu hg19 14 50915494 50915494 + Missense_Mutation SNP T T C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . MAP4K5 NM_006575 exon15 c.A1072G p.M358V TTACCATTTCATC . 39.0 29.0 200.0 0.0 . 48 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68238928 68238928 + Splice_Site SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZFYVE26 NM_015346 exon29 c.5321-1G>A . AGATACCTGGGAG . 90.0 71.0 148.0 0.0 . 223 . . Atlas-SNP VWA3A 146177 hgsc.bcm.edu hg19 16 22126725 22126725 + Silent SNP G G A rs368919567 TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . VWA3A NM_173615 exon9 c.G747A p.L249L CAACCTGCTACAA . 173.0 79.0 98.0 0.0 . 115 . . Atlas-SNP ZNF668 79759 hgsc.bcm.edu hg19 16 31072640 31072640 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZNF668 NM_001172669 exon4 c.T1678A p.S560T GGTGTGAGCGCTC . 147.0 28.0 51.0 0.0 . 121 . . Atlas-SNP TSNAXIP1 55815 hgsc.bcm.edu hg19 16 67859123 67859123 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . TSNAXIP1 NM_018430 exon7 c.C600A p.D200E CGCAGACCTGAAT . 165.0 69.0 68.0 0.0 . 66 . . Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72831362 72831362 + Missense_Mutation SNP T T G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZFHX3 NM_006885 exon9 c.A5219C p.Q1740P GCTTGTTGTTGTT . 407.0 19.0 106.0 0.0 . 404 . . Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72831363 72831363 + Missense_Mutation SNP G G C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZFHX3 NM_006885 exon9 c.C5218G p.Q1740E CTTGTTGTTGTTG . 404.0 21.0 105.0 0.0 . 404 . . Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21319829 21319829 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . . NM_001194958 exon3 c.C1175A p.A392E ATGAGGCGGACGG . 100.0 21.0 25.0 0.0 . . . . Atlas-SNP ARHGAP23 57636 hgsc.bcm.edu hg19 17 36622999 36622999 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ARHGAP23 NM_001199417 exon7 c.A1075T p.T359S CGGGCCACCCGTT . 108.0 44.0 39.0 0.0 . 48 . . Atlas-SNP GJC1 10052 hgsc.bcm.edu hg19 17 42883077 42883077 + Missense_Mutation SNP C C G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . GJC1 NM_005497 exon3 c.G109C p.A37P CTACAGCTGTAAG . 230.0 96.0 139.0 0.0 . 45 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76421607 76421607 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . DNAH17 NM_173628 exon80 c.T12961A p.W4321R CCAGCCACACGGT . 100.0 12.0 31.0 0.0 . 347 . . Atlas-SNP ENGASE 64772 hgsc.bcm.edu hg19 17 77075702 77075702 + Missense_Mutation SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ENGASE NM_001042573 exon4 c.A548G p.H183R ACAGGCATGGGGT . 197.0 82.0 65.0 0.0 . 55 . . Atlas-SNP LRRC45 201255 hgsc.bcm.edu hg19 17 79982609 79982609 + Missense_Mutation SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . LRRC45 NM_144999 exon3 c.A323G p.K108R TGGGAAAACTCCT . 108.0 46.0 51.0 0.0 . 22 . . Atlas-SNP MBD3 53615 hgsc.bcm.edu hg19 19 1578491 1578491 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . MBD3 NM_003926 exon6 c.G724T p.A242S TCAGCGCCTCCTC . 98.0 20.0 39.0 0.0 . 22 . . Atlas-SNP LONP1 9361 hgsc.bcm.edu hg19 19 5699211 5699211 + Silent SNP G G A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . LONP1 NM_004793 exon10 c.C1512T p.S504S GGCAATGAACTCC . 43.0 27.0 22.0 0.0 . 66 . . Atlas-SNP ZNF565 147929 hgsc.bcm.edu hg19 19 36673862 36673862 + Nonsense_Mutation SNP C C A rs373289614 bycluster;alternate_allele TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZNF565 NM_001042474 exon5 c.G1006T p.E336X TACACTCGTAGGG . 163.0 49.0 94.0 0.0 . 46 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38378936 38378936 + Missense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . WDR87 NM_031951 exon6 c.A5258T p.E1753V GCCTCCTCTTCCT . 359.0 121.0 329.0 0.0 . 191 . . Atlas-SNP ZFP36 7538 hgsc.bcm.edu hg19 19 39898413 39898413 + Missense_Mutation SNP G G T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZFP36 NM_003407 exon2 c.G73T p.V25L GTGCCCGTGCCAT . 72.0 18.0 24.0 0.0 . 19 . . Atlas-SNP B9D2 80776 hgsc.bcm.edu hg19 19 41860879 41860879 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . B9D2 NM_030578 exon4 c.G254T p.S85I CCAAAGCTGTCCT . 72.0 43.0 32.0 0.0 . 9 . . Atlas-SNP KDELR1 10945 hgsc.bcm.edu hg19 19 48886580 48886580 + Silent SNP T T C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . KDELR1 NM_006801 exon5 c.A609G p.L203L CCCCTTTAGGACT . 107.0 56.0 49.0 0.0 . 26 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55493601 55493601 + Missense_Mutation SNP A A T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . NLRP2 NM_017852 exon6 c.A535T p.S179C GGAGATAGCAAAG . 239.0 124.0 104.0 0.0 . 161 . . Atlas-SNP ZIK1 284307 hgsc.bcm.edu hg19 19 58101688 58101688 + Missense_Mutation SNP G G T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZIK1 NM_001010879 exon4 c.G509T p.W170L GCAAATGGGAGGT . 147.0 49.0 83.0 0.0 . 94 . . Atlas-SNP ADRA1D 146 hgsc.bcm.edu hg19 20 4202228 4202228 + Missense_Mutation SNP G G T rs371559421 alternate_allele TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ADRA1D NM_000678 exon2 c.C1661A p.A554D CAGGTGGCGCCCT . 236.0 102.0 62.0 0.0 . 36 . . Atlas-SNP ADRA1D 146 hgsc.bcm.edu hg19 20 4202229 4202229 + Missense_Mutation SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ADRA1D NM_000678 exon2 c.G1660A p.A554T AGGTGGCGCCCTC . 236.0 102.0 60.0 0.0 . 36 . . Atlas-SNP BMP7 655 hgsc.bcm.edu hg19 20 55840845 55840845 + Missense_Mutation SNP T T A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . BMP7 NM_001719 exon1 c.A334T p.S112C GGGTACTGAAGAC . 177.0 79.0 61.0 0.0 . 60 . . Atlas-SNP TLR7 51284 hgsc.bcm.edu hg19 X 12904609 12904609 + Missense_Mutation SNP A A G novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . TLR7 NM_016562 exon3 c.A982G p.K328E TTGGCCAAAGAAA . 95.0 82.0 86.0 0.0 . 125 . . Atlas-SNP MORF4L2 9643 hgsc.bcm.edu hg19 X 102931737 102931737 + Missense_Mutation SNP C C A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . MORF4L2 NM_001142422 exon5 c.G219T p.R73S GGTCTTCCTCACG . 219.0 206.0 82.0 0.0 . 35 . . Atlas-SNP ZFP92 139735 hgsc.bcm.edu hg19 X 152685756 152685756 + Silent SNP C C T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZFP92 NM_001136273 exon3 c.C231T p.I77I AGACATCCCCAGA . 307.0 291.0 65.0 0.0 . 26 . . Atlas-SNP RAI14 26064 hgsc.bcm.edu hg19 5 34826481 34826482 + Frame_Shift_Ins INS - - C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 RAI14,NS,carcinoma,0,1 RAI14 NM_001145525 exon18 c.2705_2706insC p.N902fs . . 298.0 19.0 86.0 0.0 . 100 . . Atlas-INDEL ZNF395 55893 hgsc.bcm.edu hg19 8 28210928 28210928 + Splice_Site DEL G G - novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . ZNF395 NM_018660 exon6 c.584-2C>- . . . 164.0 80.0 55.0 0.0 . 54 . . Atlas-Indel,Pindel PLCG1 5335 hgsc.bcm.edu hg19 20 39792450 39792451 + Frame_Shift_Ins INS - - T novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PLCG1 NM_182811 exon10 c.987_988insT p.Y329fs . . 353.0 140.0 112.0 0.0 . 111 . . Atlas-Indel,Pindel NFYA 4800 hgsc.bcm.edu hg19 6 41065105 41065106 + Frame_Shift_Ins INS - - A novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . NFYA NM_002505 exon10 c.1000_1001insA p.Q334fs . . 264.0 16.0 144.0 0.0 . 33 . . Atlas-INDEL PITPNM3 83394 hgsc.bcm.edu hg19 17 6360967 6360970 + Frame_Shift_Del DEL AGGC AGGC - novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 AGGC AGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . PITPNM3 NM_031220 exon19 c.2564_2567del p.855_856del . . 54.0 41.0 52.0 0.0 . 91 . . Atlas-Indel,Pindel QSOX2 169714 hgsc.bcm.edu hg19 9 139108510 139108511 + Frame_Shift_Ins INS - - C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . QSOX2 NM_181701 exon9 c.1145_1146insG p.A382fs . . 119.0 13.0 33.0 0.0 . 63 . . Atlas-INDEL GSE1 23199 hgsc.bcm.edu hg19 16 85687939 85687940 + Frame_Shift_Del DEL CG CG - novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . . NM_014615 exon4 c.481_482del p.161_161del . . 147.0 121.0 93.0 0.0 . . . . Atlas-Indel,Pindel HEATR2 54919 hgsc.bcm.edu hg19 7 769380 769381 + Frame_Shift_Ins INS - - C novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . HEATR2 NM_017802 exon2 c.676_677insC p.A226fs . . 226.0 15.0 56.0 0.0 . 62 . . Atlas-INDEL UBXN7 26043 hgsc.bcm.edu hg19 3 196134222 196134222 + Frame_Shift_Del DEL T T - novel TCGA-CC-5264-01A-01D-A12Z-10 TCGA-CC-5264-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7ebf24cf-16a5-4dd3-b594-062b8d626dc3 b864a5b7-de17-4b12-b93e-4246ea56a3d6 . UBXN7 NM_015562 exon2 c.117delC p.N39fs . . 278.0 93.0 196.0 0.0 . 43 . . Atlas-Indel,Pindel