Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm NRAS 4893 hgsc.bcm.edu hg19 1 115256530 115256530 + Missense_Mutation SNP G G T rs121913254 bycluster TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf NRAS,NS,haematopoietic_neoplasm,0,4 NRAS NM_002524 exon3 c.C181A p.Q61K CTTCTTGTCCAGC . 75.0 8.0 100.0 0.0 . 3766 . . Atlas-SNP ITGA10 8515 hgsc.bcm.edu hg19 1 145533439 145533439 + Missense_Mutation SNP G G T rs149835959 alternate_allele TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ITGA10 NM_003637 exon12 c.G1322T p.R441L TTTTGCGGGGTGG . 77.0 8.0 37.0 0.0 . 131 . G|1.000;A|0.000 Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176759013 176759013 + Missense_Mutation SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . PAPPA2 NM_020318 exon18 c.G4784A p.C1595Y TGGTGTGTGAGCC . 156.0 44.0 136.0 0.0 . 665 . . Atlas-SNP CRB1 23418 hgsc.bcm.edu hg19 1 197297620 197297620 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CRB1 NM_001257966 exon2 c.G139T p.D47Y TGCAAAGATTTTT . 173.0 7.0 104.0 0.0 . 284 . . Atlas-SNP IPO9 55705 hgsc.bcm.edu hg19 1 201827625 201827625 + Silent SNP A A C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . IPO9 NM_018085 exon12 c.A1272C p.A424A TGCTGCAGCCACT . 246.0 72.0 210.0 0.0 . 98 . . Atlas-SNP TMCC2 9911 hgsc.bcm.edu hg19 1 205238236 205238236 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . TMCC2 NM_014858 exon3 c.G906A p.Q302Q CGAGCAGATCAAG . 491.0 82.0 367.0 0.0 . 89 . . Atlas-SNP PGBD5 79605 hgsc.bcm.edu hg19 1 230468774 230468774 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf PGBD5,NS,carcinoma,0,1 PGBD5 NM_001258311 exon5 c.C1089T p.C363C CAAGCCGCAGCAG . 57.0 34.0 44.0 0.0 . 73 . . Atlas-SNP ITSN2 50618 hgsc.bcm.edu hg19 2 24535152 24535152 + Missense_Mutation SNP T T A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ITSN2 NM_147152 exon5 c.A281T p.Q94L GGCAACTGTTGGC . 308.0 62.0 299.0 0.0 . 224 . . Atlas-SNP TMEM247 388946 hgsc.bcm.edu hg19 2 46707702 46707702 + Silent SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . . NM_001145051 exon2 c.G276T p.L92L AGAGCTGCCCCCG . 145.0 78.0 132.0 0.0 . . . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54753649 54753649 + Missense_Mutation SNP A A T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . SPTBN1 NM_003128 exon2 c.A94T p.N32Y TGGGACAATGAGA . 128.0 64.0 137.0 0.0 . 378 . . Atlas-SNP WDR33 55339 hgsc.bcm.edu hg19 2 128477498 128477498 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . WDR33 NM_018383 exon16 c.C2101A p.P701T CTTGAGGACCAGA . 33.0 13.0 52.0 0.0 . 136 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179441674 179441674 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . TTN NM_001267550 exon324 c.C69388A p.P23130T TGACAGGTTCAGA . 132.0 38.0 121.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179485580 179485580 + Missense_Mutation SNP A A G novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . TTN NM_001267550 exon247 c.T45757C p.Y15253H TGATGTATTTTGA . 170.0 36.0 99.0 0.0 . 18412 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215862522 215862522 + Missense_Mutation SNP C C A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ABCA12 NM_173076 exon23 c.G3191T p.S1064I GAGACACTGGTTA . 220.0 83.0 188.0 0.0 . 368 . . Atlas-SNP FGD5 152273 hgsc.bcm.edu hg19 3 14964028 14964028 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . FGD5 NM_152536 exon15 c.G3780A p.R1260R CCTGCGGCGTCAT . 113.0 18.0 90.0 0.0 . 248 . . Atlas-SNP ITGA9 3680 hgsc.bcm.edu hg19 3 37574884 37574884 + Missense_Mutation SNP G G A rs369791724 TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ITGA9 NM_002207 exon14 c.G1453A p.G485R CACGACGGACAGC . 175.0 72.0 169.0 0.0 . 98 . . Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89456488 89456488 + Missense_Mutation SNP T T A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . EPHA3 NM_005233 exon8 c.T1664A p.L555H TTATTCTCCTCAC . 142.0 74.0 178.0 0.0 . 501 . . Atlas-SNP HHLA2 11148 hgsc.bcm.edu hg19 3 108076864 108076864 + Nonsense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . HHLA2 NM_007072 exon6 c.C859T p.R287X GAATCCCGATTCT . 116.0 63.0 159.0 0.0 . 95 . . Atlas-SNP ZBED2 79413 hgsc.bcm.edu hg19 3 111312778 111312778 + Missense_Mutation SNP C C A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ZBED2 NM_024508 exon2 c.G271T p.V91F CGTTGACCCCAGG . 38.0 21.0 38.0 0.0 . 22 . . Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113375328 113375328 + Missense_Mutation SNP C C A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . KIAA2018 NM_001009899 exon7 c.G5201T p.C1734F GTCTGACAATCAG . 179.0 22.0 225.0 0.0 . 180 . . Atlas-SNP ADCY5 111 hgsc.bcm.edu hg19 3 123033087 123033087 + Missense_Mutation SNP C C T rs372853437 TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ADCY5 NM_183357 exon12 c.G2437A p.V813I CCTTTACGCAGGA . 301.0 95.0 458.0 1.0 . 169 . . Atlas-SNP CHST2 9435 hgsc.bcm.edu hg19 3 142840620 142840620 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf CHST2,colon,carcinoma,0,1 CHST2 NM_004267 exon2 c.C962T p.P321L GAGACCCGGCCCT . 39.0 28.0 48.0 0.0 . 67 . . Atlas-SNP SLC33A1 9197 hgsc.bcm.edu hg19 3 155571528 155571528 + Missense_Mutation SNP T T C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . SLC33A1 NM_004733 exon1 c.A259G p.I87V GGGGAATACCCTG . 101.0 60.0 117.0 0.0 . 57 . . Atlas-SNP NAALADL2 254827 hgsc.bcm.edu hg19 3 174951769 174951769 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . NAALADL2 NM_207015 exon3 c.G594T p.K198N TTCAAAGAAGATT . 64.0 16.0 69.0 0.0 . 86 . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180361989 180361989 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CCDC39 NM_181426 exon12 c.C1584T p.S528S CATAAGGGACTGT . 20.0 7.0 29.0 0.0 . 242 . . Atlas-SNP TMPRSS11D 9407 hgsc.bcm.edu hg19 4 68691558 68691558 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . TMPRSS11D NM_004262 exon9 c.C987T p.V329V TATTCTGACCTGT . 130.0 31.0 141.0 0.0 . 68 . . Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90816255 90816255 + Missense_Mutation SNP C C A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf MMRN1,NS,carcinoma,0,1 MMRN1 NM_007351 exon1 c.C133A p.P45T TCAGTTCCTCCAA . 32.0 21.0 76.0 0.0 . 174 . . Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90816256 90816256 + Missense_Mutation SNP C C A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . MMRN1 NM_007351 exon1 c.C134A p.P45H CAGTTCCTCCAAA . 32.0 21.0 77.0 0.0 . 174 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123193335 123193335 + Missense_Mutation SNP C C G novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . KIAA1109 NM_015312 exon46 c.C8221G p.P2741A ACAGAGCCAACAT . 102.0 34.0 182.0 0.0 . 424 . . Atlas-SNP HPGD 3248 hgsc.bcm.edu hg19 4 175439184 175439184 + Missense_Mutation SNP A A T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . HPGD NM_000860 exon3 c.T262A p.L88M TGACCAAAATGTC . 86.0 7.0 129.0 0.0 . 19 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90000211 90000211 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . GPR98 NM_032119 exon36 c.G8292A p.S2764S GGGGTCGTTGAAT . 239.0 16.0 224.0 0.0 . 605 . . Atlas-SNP C5orf52 100190949 hgsc.bcm.edu hg19 5 157106849 157106849 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . C5orf52 NM_001145132 exon3 c.G322T p.V108L TGTAAGGTGAGCG . 256.0 102.0 291.0 0.0 . 17 . . Atlas-SNP CLK4 57396 hgsc.bcm.edu hg19 5 178039797 178039797 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CLK4 NM_020666 exon8 c.G921A p.M307I ACTTACCATTTTA . 119.0 6.0 116.0 0.0 . 103 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7580848 7580848 + Silent SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . DSP NM_004415 exon23 c.C4425T p.T1475T CAAAACCATCCAG . 224.0 81.0 180.0 0.0 . 306 . . Atlas-SNP DHX16 8449 hgsc.bcm.edu hg19 6 30638843 30638843 + Missense_Mutation SNP T T G novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . DHX16 NM_003587 exon2 c.A416C p.E139A GAAGCCTCTTCCT . 197.0 17.0 155.0 0.0 . 119 . . Atlas-SNP MDC1 9656 hgsc.bcm.edu hg19 6 30672574 30672574 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . MDC1 NM_014641 exon10 c.C4386A p.D1462E AGGCTGGTCTGTG . 158.0 52.0 126.0 0.0 . 218 . . Atlas-SNP TMEM184A 202915 hgsc.bcm.edu hg19 7 1594988 1594988 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . TMEM184A NM_001097620 exon2 c.G133A p.A45T AGGGGGCCCCCTG . 58.0 32.0 53.0 0.0 . 35 . . Atlas-SNP STEAP1B 256227 hgsc.bcm.edu hg19 7 22532994 22532994 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf STEAP1B,colon,carcinoma,0,2 STEAP1B NM_001164460 exon3 c.C546T p.Y182Y CATTGCGTAAGAC . 189.0 18.0 156.0 0.0 . 22 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48567919 48567919 + Missense_Mutation SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ABCA13 NM_152701 exon55 c.G14332A p.A4778T GGACATGCTATCA . 77.0 14.0 69.0 0.0 . 1192 . . Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92926471 92926471 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CCDC132 NM_017667 exon16 c.G1277T p.G426V AAGTTGGAGAAGA . 94.0 4.0 90.0 0.0 . 136 . . Atlas-SNP SLC26A3 1811 hgsc.bcm.edu hg19 7 107423494 107423494 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . SLC26A3 NM_000111 exon10 c.C1164T p.F388F TCCTCTGAATACT . 166.0 64.0 179.0 0.0 . 120 . . Atlas-SNP ASAP1 50807 hgsc.bcm.edu hg19 8 131181257 131181257 + Missense_Mutation SNP A A C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . ASAP1 NM_018482 exon10 c.T803G p.L268R GCAGCCAGTTTTT . 96.0 34.0 94.0 0.0 . 133 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2039815 2039815 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . SMARCA2 NM_139045 exon4 c.G705A p.Q235Q GCAGCAGCAACAG . 27.0 5.0 35.0 0.0 . 313 . . Atlas-SNP TEX10 54881 hgsc.bcm.edu hg19 9 103092435 103092435 + Missense_Mutation SNP C C G novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . TEX10 NM_001161584 exon6 c.G1276C p.V426L AGAGAACTGTGCA . 65.0 29.0 72.0 0.0 . 99 . . Atlas-SNP NOTCH1 4851 hgsc.bcm.edu hg19 9 139395193 139395193 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . NOTCH1 NM_017617 exon31 c.C5745T p.Y1915Y GCCCTGGTAGATG . 8.0 5.0 5.0 0.0 . 1980 . . Atlas-SNP ASB13 79754 hgsc.bcm.edu hg19 10 5683746 5683746 + Silent SNP G G A rs144206251 bycluster;alternate_allele TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf ASB13,NS,carcinoma,0,1 ASB13 NM_024701 exon5 c.C696T p.F232F GTACTCGAAGCAC . 92.0 59.0 117.0 1.0 . 26 . G|1.000;T|0.000 Atlas-SNP GHITM 27069 hgsc.bcm.edu hg19 10 85902445 85902445 + Missense_Mutation SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf GHITM,NS,adenocarcinoma,0,1 GHITM NM_014394 exon3 c.G164A p.R55H TCCGGCGTGGGAG . 128.0 8.0 96.0 0.0 . 30 . . Atlas-SNP FEN1 2237 hgsc.bcm.edu hg19 11 61563319 61563319 + Silent SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . FEN1 NM_004111 exon2 c.C486T p.S162S GGCCAGCTGTGCT . 69.0 23.0 94.0 0.0 . 15 . . Atlas-SNP CNIH2 254263 hgsc.bcm.edu hg19 11 66050237 66050237 + Missense_Mutation SNP T T C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CNIH2 NM_182553 exon3 c.T184C p.C62R ATCTGCTGCCTCC . 68.0 10.0 156.0 0.0 . 15 . . Atlas-SNP CNIH2 254263 hgsc.bcm.edu hg19 11 66050238 66050238 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CNIH2 NM_182553 exon3 c.G185T p.C62F TCTGCTGCCTCCT . 68.0 10.0 154.0 0.0 . 15 . . Atlas-SNP CNIH2 254263 hgsc.bcm.edu hg19 11 66050239 66050239 + Silent SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CNIH2 NM_182553 exon3 c.C186T p.C62C CTGCTGCCTCCTG . 69.0 10.0 154.0 0.0 . 15 . . Atlas-SNP PGR 5241 hgsc.bcm.edu hg19 11 100996842 100996842 + Nonsense_Mutation SNP A A C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . PGR NM_000926 exon2 c.T1685G p.L562X TGAGGTAATGACT . 102.0 19.0 112.0 0.0 . 115 . . Atlas-SNP APOA5 116519 hgsc.bcm.edu hg19 11 116661338 116661338 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . APOA5 NM_001166598 exon4 c.G607A p.G203R GGCGCCCGATGCC . 5.0 4.0 7.0 0.0 . 34 . . Atlas-SNP AQP5 362 hgsc.bcm.edu hg19 12 50358790 50358790 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . AQP5 NM_001651 exon4 c.C628T p.P210S GTAGGGCCCATCG . 82.0 49.0 151.0 0.0 . 19 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28964106 28964106 + Missense_Mutation SNP G G C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . FLT1 NM_002019 exon13 c.C1796G p.T599R TGCATTGTTCTGT . 238.0 27.0 230.0 0.0 . 393 . . Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 42054412 42054412 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . MGA NM_001164273 exon22 c.G7596A p.K2532K AAAGAAGATGGGA . 170.0 94.0 188.0 1.0 . 264 . . Atlas-SNP DUOX2 50506 hgsc.bcm.edu hg19 15 45387780 45387780 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . DUOX2 NM_014080 exon31 c.G4094A p.G1365E AACGGTCCATCAA . 87.0 39.0 127.0 0.0 . 137 . . Atlas-SNP SCAPER 49855 hgsc.bcm.edu hg19 15 77025616 77025616 + Missense_Mutation SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf SCAPER,colon,carcinoma,0,1 SCAPER NM_020843 exon15 c.G1976A p.R659H CTCTGACGCTCTT . 109.0 44.0 117.0 0.0 . 160 . . Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 347721 347721 + Splice_Site SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . AXIN1 NM_181050 exon7 c.1784+1G>A . CGCTCACCTGTGG . 7.0 7.0 16.0 0.0 . 290 . . Atlas-SNP SLX4 84464 hgsc.bcm.edu hg19 16 3642739 3642739 + Missense_Mutation SNP G G T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . SLX4 NM_032444 exon11 c.C2288A p.P763H CCAGGAGGAAGGC . 54.0 4.0 131.0 0.0 . 173 . . Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu hg19 16 76482022 76482022 + Missense_Mutation SNP G G C novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . CNTNAP4 NM_138994 exon5 c.G577C p.D193H CAGAGTGATGGGA . 77.0 70.0 146.0 0.0 . 600 . . Atlas-SNP MYO15A 51168 hgsc.bcm.edu hg19 17 18055202 18055202 + Missense_Mutation SNP T T A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . MYO15A NM_016239 exon40 c.T7830A p.H2610Q CCCTCATGAGGAG . 139.0 39.0 183.0 0.0 . 268 . . Atlas-SNP SOST 50964 hgsc.bcm.edu hg19 17 41836014 41836014 + Missense_Mutation SNP A A T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . SOST NM_025237 exon1 c.T96A p.D32E CGTGGCATCATTC . 71.0 25.0 100.0 0.0 . 19 . . Atlas-SNP DTNA 1837 hgsc.bcm.edu hg19 18 32428268 32428268 + Missense_Mutation SNP A A G rs374916548 TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . DTNA NM_001390 exon13 c.A1274G p.E425G TGCTTGAGAGTTC . 45.0 42.0 87.0 0.0 . 321 . . Atlas-SNP GTF2F1 2962 hgsc.bcm.edu hg19 19 6381584 6381584 + Silent SNP C C T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . GTF2F1 NM_002096 exon8 c.G879A p.Q293Q CTCCTGCTGCGGC . 9.0 6.0 15.0 0.0 . 39 . . Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42839240 42839240 + Silent SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . MEGF8 NM_001271938 exon4 c.G612A p.L204L TGACCTGCACCTG . 54.0 8.0 104.0 0.0 . 358 . . Atlas-SNP ZNF816-ZNF321P 100529240 hgsc.bcm.edu hg19 19 53432442 53432442 + Missense_Mutation SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . . NM_001202473 exon4 c.C416T p.T139I CGGTCTGTACTAC . 148.0 72.0 174.0 0.0 . . . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41427743 41427743 + Silent SNP C C A rs374386822 alternate_allele TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . DSCAM NM_001271534 exon29 c.G4944T p.T1648T GCTTAACGTATCT . 152.0 79.0 225.0 0.0 . 347 . . Atlas-SNP BCORL1 63035 hgsc.bcm.edu hg19 X 129147853 129147853 + Missense_Mutation SNP A A G novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . BCORL1 NM_021946 exon3 c.A1105G p.T369A CCTTCTACCCCCA . 21.0 12.0 32.0 0.0 . 213 . . Atlas-SNP BCORL1 63035 hgsc.bcm.edu hg19 X 129162763 129162763 + Missense_Mutation SNP A A T novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . BCORL1 NM_021946 exon7 c.A4232T p.E1411V GCCTTGAAAATTC . 174.0 91.0 199.0 0.0 . 213 . . Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 9010 9010 + Missense_Mutation SNP G G A novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . . ENST00000361899 exon1 c.G484A p.A162T CTAACCGCTAACA . 8.0 7.0 44.0 0.0 . . . . Atlas-SNP KIAA1147 57189 hgsc.bcm.edu hg19 7 141373871 141373872 + Frame_Shift_Ins INS - - TC novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . KIAA1147 NM_001080392 exon4 c.677_678insGA p.M226fs . . 128.0 60.0 129.0 0.0 . 32 . . Atlas-INDEL COL2A1 1280 hgsc.bcm.edu hg19 12 48389497 48389498 + In_Frame_Ins INS - - CACCAGGTT novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . COL2A1 NM_001844 exon10 c.704_705insAACCTGGTG p.V235delinsEPGV . . 217.0 19.0 291.0 0.0 . 368 . . Atlas-INDEL KRTAP5-7 440050 hgsc.bcm.edu hg19 11 71238736 71238762 + In_Frame_Del DEL CTGCTGTTCCTCAGGCTGTGGGTCATC CTGCTGTTCCTCAGGCTGTGGGTCATC - novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 CTGCTGTTCCTCAGGCTGTGGGTCATC CTGCTGTTCCTCAGGCTGTGGGTCATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . KRTAP5-7 NM_001012503 exon1 c.389_415del p.130_139del . . 147.0 13.0 174.0 0.0 . 23 . . Atlas-INDEL OR10G8 219869 hgsc.bcm.edu hg19 11 123900967 123900967 + Frame_Shift_Del DEL T T - novel TCGA-BW-A5NP-01A-11D-A27I-10 TCGA-BW-A5NP-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c00925b-7328-4db0-b930-04aab2d80719 600ba105-b0f1-4fba-b1ec-0bbfe622e6cf . OR10G8 NM_001004464 exon1 c.637delA p.I213X . . 295.0 35.0 352.0 0.0 . 132 . . Pindel