Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm DVL1 1855 hgsc.bcm.edu hg19 1 1273715 1273715 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DVL1 NM_004421 exon13 c.C1366T p.R456W TGTGCCGCAGGAA . 67.0 27.0 88.0 0.0 . 36 . . Atlas-SNP C1orf174 339448 hgsc.bcm.edu hg19 1 3807306 3807306 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C1orf174 NM_207356 exon3 c.G445A p.G149R CTGCTCCGGACCC . 93.0 38.0 123.0 0.0 . 20 . . Atlas-SNP CHD5 26038 hgsc.bcm.edu hg19 1 6202186 6202186 + Splice_Site SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHD5 NM_015557 exon16 c.2436+2T>C . GCCCTCACCTTCA . 120.0 43.0 122.0 0.0 . 267 . . Atlas-SNP PLEKHG5 57449 hgsc.bcm.edu hg19 1 6531575 6531575 + Silent SNP G G A rs139904931 bycluster;byfrequency;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PLEKHG5_ENST00000377748,NS,carcinoma,0,1 PLEKHG5 NM_001265592 exon13 c.C1491T p.P497P GTCCCCGGGCTGT . 140.0 55.0 181.0 0.0 . 66 . G|0.997;C|0.003 Atlas-SNP ZBTB48 3104 hgsc.bcm.edu hg19 1 6642238 6642238 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZBTB48 NM_005341 exon3 c.C811T p.L271L CCAGCCCTGAGCG . 164.0 59.0 200.0 0.0 . 33 . . Atlas-SNP DNAJC11 55735 hgsc.bcm.edu hg19 1 6697322 6697322 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAJC11 NM_018198 exon14 c.A1460G p.D487G GTCACGTCAATCA . 107.0 40.0 126.0 0.0 . 93 . . Atlas-SNP PER3 8863 hgsc.bcm.edu hg19 1 7854025 7854025 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PER3 NM_016831 exon5 c.C598T p.R200W GCTGCACGGTATG . 134.0 64.0 111.0 0.0 . 95 . . Atlas-SNP PER3 8863 hgsc.bcm.edu hg19 1 7887318 7887318 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PER3 NM_016831 exon17 c.C2305T p.P769S GCACAGCCCTGCT . 160.0 68.0 150.0 0.0 . 95 . . Atlas-SNP CLSTN1 22883 hgsc.bcm.edu hg19 1 9795966 9795966 + Missense_Mutation SNP C C T rs201640412 bycluster TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CLSTN1,colon,carcinoma,0,1 CLSTN1 NM_001009566 exon12 c.G1711A p.E571K TGTCTTCGAGGAC . 96.0 31.0 83.0 0.0 . 88 . C|0.999;T|0.001 Atlas-SNP CASZ1 54897 hgsc.bcm.edu hg19 1 10713986 10713986 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CASZ1 NM_001079843 exon11 c.C2128A p.L710M CGCCCAGCAGCGA . 112.0 46.0 108.0 0.0 . 150 . . Atlas-SNP C1orf127 148345 hgsc.bcm.edu hg19 1 11009719 11009719 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C1orf127 NM_001170754 exon11 c.C1252T p.R418W GGTCCCGAGAAAG . 118.0 45.0 132.0 0.0 . 134 . . Atlas-SNP EXOSC10 5394 hgsc.bcm.edu hg19 1 11151567 11151567 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EXOSC10 NM_001001998 exon4 c.T460C p.S154P AGCTGGACACTAC . 132.0 38.0 123.0 0.0 . 59 . . Atlas-SNP MIIP 60672 hgsc.bcm.edu hg19 1 12082888 12082888 + Splice_Site SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MIIP NM_021933 exon4 c.463-2A>G . TTCCTCAGCCCAG . 57.0 19.0 77.0 0.0 . 34 . . Atlas-SNP TMEM51 55092 hgsc.bcm.edu hg19 1 15541641 15541641 + Missense_Mutation SNP G G T rs147062114 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM51 NM_018022 exon2 c.G58T p.G20W GGCCTGGGGATGC . 65.0 29.0 44.0 0.0 . 28 . G|1.000;T|0.000 Atlas-SNP FHAD1 114827 hgsc.bcm.edu hg19 1 15702219 15702219 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FHAD1 NM_052929 exon27 c.T3632A p.I1211N TAGAGATCCTAGC . 93.0 34.0 117.0 0.0 . 78 . . Atlas-SNP CLCNKB 1188 hgsc.bcm.edu hg19 1 16377520 16377520 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CLCNKB NM_000085 exon12 c.C1204A p.L402I GGGACCCTTGCCT . 132.0 59.0 142.0 0.0 . 50 . . Atlas-SNP ATP13A2 23400 hgsc.bcm.edu hg19 1 17328825 17328825 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATP13A2 NM_022089 exon7 c.C601T p.R201C CATGGCGGGAGCG . 342.0 156.0 334.0 0.0 . 85 . . Atlas-SNP PADI2 11240 hgsc.bcm.edu hg19 1 17418998 17418998 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PADI2 NM_007365 exon6 c.G560T p.R187L TTGGTCCGCAGGA . 111.0 14.0 119.0 0.0 . 72 . . Atlas-SNP ARHGEF10L 55160 hgsc.bcm.edu hg19 1 17983183 17983183 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGEF10L NM_018125 exon25 c.C2840A p.A947D CCCTTGCTGCTTA . 151.0 38.0 161.0 0.0 . 219 . . Atlas-SNP CDA 978 hgsc.bcm.edu hg19 1 20931423 20931423 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDA NM_001785 exon2 c.T157C p.C53R TCAGGGTGCAACA . 124.0 39.0 142.0 0.0 . 19 . . Atlas-SNP EPHA8 2046 hgsc.bcm.edu hg19 1 22928128 22928128 + Missense_Mutation SNP G G A rs139543017 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPHA8 NM_020526 exon17 c.G2912A p.R971H ACGTGCGCGCCCT . 168.0 66.0 213.0 0.0 . 221 . G|1.000;A|0.000 Atlas-SNP C1QA 712 hgsc.bcm.edu hg19 1 22965607 22965607 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C1QA NM_015991 exon3 c.G445A p.G149S CACTCCGGCCGAT . 201.0 82.0 232.0 0.0 . 31 . . Atlas-SNP EPHB2 2048 hgsc.bcm.edu hg19 1 23191427 23191427 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPHB2 NM_004442 exon5 c.T1025A p.L342Q TCATGCTGGAGTG . 214.0 84.0 174.0 0.0 . 257 . . Atlas-SNP ASAP3 55616 hgsc.bcm.edu hg19 1 23763464 23763464 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ASAP3 NM_017707 exon15 c.C1416T p.G472G GCGCACGCCCAGT . 129.0 52.0 116.0 0.0 . 65 . . Atlas-SNP SRRM1 10250 hgsc.bcm.edu hg19 1 24995828 24995828 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SRRM1,NS,carcinoma,0,1 SRRM1 NM_005839 exon14 c.C1954T p.R652C AAGAGACGTTCAC . 222.0 84.0 222.0 0.0 . 81 . . Atlas-SNP CEP85 64793 hgsc.bcm.edu hg19 1 26586251 26586251 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CEP85 NM_022778 exon7 c.G1299A p.A433A AGTGGCGTTGCAG . 223.0 69.0 218.0 0.0 . 61 . . Atlas-SNP UBXN11 91544 hgsc.bcm.edu hg19 1 26609381 26609381 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UBXN11 NM_183008 exon14 c.G1125A p.T375T GGTGGGCGTCTCC . 96.0 23.0 99.0 0.0 . 54 . . Atlas-SNP FCN3 8547 hgsc.bcm.edu hg19 1 27697179 27697179 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FCN3 NM_003665 exon7 c.A566T p.N189I GTACGGTTACCAT . 106.0 48.0 168.0 0.0 . 30 . . Atlas-SNP AHDC1 27245 hgsc.bcm.edu hg19 1 27876444 27876444 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AHDC1 NM_001029882 exon6 c.G2183A p.R728Q TCCCCCCGGCCCC . 174.0 65.0 250.0 0.0 . 98 . . Atlas-SNP SESN2 83667 hgsc.bcm.edu hg19 1 28598852 28598852 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SESN2 NM_031459 exon4 c.C412A p.Q138K TTTCTGCAGACTG . 83.0 33.0 73.0 0.0 . 51 . . Atlas-SNP GMEB1 10691 hgsc.bcm.edu hg19 1 29010172 29010172 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GMEB1 NM_006582 exon2 c.A48G p.V16V TGTGGTACCTACT . 131.0 38.0 154.0 0.0 . 28 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34083155 34083155 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CSMD2 NM_052896 exon38 c.C5770T p.R1924C AGTAGCGCTCGCC . 81.0 46.0 97.0 0.0 . 946 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34090759 34090759 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CSMD2 NM_052896 exon34 c.C5272T p.R1758C CGAAGCGGACGAT . 168.0 70.0 200.0 0.0 . 946 . . Atlas-SNP GJB4 127534 hgsc.bcm.edu hg19 1 35227148 35227148 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 GJB4,NS,haematopoietic_neoplasm,0,1 GJB4 NM_153212 exon2 c.G293A p.R98H CCTACCGCGAGGA . 75.0 28.0 90.0 1.0 . 51 . . Atlas-SNP GJA4 2701 hgsc.bcm.edu hg19 1 35260244 35260244 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GJA4 NM_002060 exon2 c.C430T p.R144C GATGGTCGCCTGC . 45.0 13.0 43.0 0.0 . 25 . . Atlas-SNP AGO3 192669 hgsc.bcm.edu hg19 1 36521336 36521336 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_024852 exon19 c.A2573G p.Y858C CAATGTACTTCGC . 100.0 6.0 74.0 0.0 . . . . Atlas-SNP OSCP1 127700 hgsc.bcm.edu hg19 1 36915910 36915910 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OSCP1 NM_145047 exon1 c.C61A p.L21I GGTCGAGGATGTA . 327.0 105.0 296.0 0.0 . 48 . . Atlas-SNP RHBDL2 54933 hgsc.bcm.edu hg19 1 39352294 39352294 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RHBDL2 NM_017821 exon8 c.T794C p.F265S CAGCTAAACACCG . 99.0 37.0 108.0 0.0 . 28 . . Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39827077 39827077 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MACF1 NM_012090 exon45 c.A6313G p.T2105A GAGGCCACCCGTG . 242.0 68.0 249.0 0.0 . 909 . . Atlas-SNP COL9A2 1298 hgsc.bcm.edu hg19 1 40771858 40771858 + Missense_Mutation SNP C C G rs199502479 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL9A2 NM_001852 exon20 c.G1010C p.G337A GGCACACCCTGCA . 68.0 34.0 60.0 0.0 . 63 . C|0.999;G|0.001 Atlas-SNP TMEM125 128218 hgsc.bcm.edu hg19 1 43738760 43738760 + Missense_Mutation SNP G G C rs143350378 bycluster;byfrequency;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM125 NM_144626 exon4 c.G367C p.V123L GGCCTCGTGCTGC . 81.0 32.0 81.0 0.0 . 18 . G|0.997;A|0.003 Atlas-SNP TIE1 7075 hgsc.bcm.edu hg19 1 43772515 43772515 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TIE1 NM_005424 exon4 c.C489A p.S163S AGGATCCTACTTC . 35.0 16.0 57.0 0.0 . 132 . . Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43895374 43895374 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SZT2 NM_015284 exon28 c.C3996T p.S1332S ATTCAGCATAGAG . 91.0 36.0 81.0 0.0 . 383 . . Atlas-SNP TOE1 114034 hgsc.bcm.edu hg19 1 45806886 45806886 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TOE1 NM_025077 exon2 c.C194T p.T65M TGGACACGGTGAG . 118.0 8.0 113.0 0.0 . 27 . . Atlas-SNP MMACHC 25974 hgsc.bcm.edu hg19 1 45974679 45974679 + Missense_Mutation SNP G G A rs202189863 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MMACHC NM_015506 exon4 c.G641A p.R214H AGGAGCGCTACTC . 111.0 45.0 112.0 0.0 . 22 . G|0.999;A|0.001 Atlas-SNP SLC5A9 200010 hgsc.bcm.edu hg19 1 48696305 48696305 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC5A9 NM_001135181 exon6 c.A613T p.M205L ATCCAGATGGCAT . 73.0 32.0 81.0 0.0 . 82 . . Atlas-SNP CDKN2C 1031 hgsc.bcm.edu hg19 1 51439649 51439649 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CDKN2C,NS,carcinoma,0,1 CDKN2C NM_001262 exon3 c.G214A p.A72T GGTTTCGCTGTCA . 126.0 41.0 97.0 0.0 . 24 . . Atlas-SNP CPT2 1376 hgsc.bcm.edu hg19 1 53679110 53679110 + Missense_Mutation SNP C C T rs201913567 by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CPT2 NM_000098 exon5 c.C1820T p.S607F TGGTCTCTGATGG . 151.0 64.0 156.0 0.0 . 34 . C|1.000;G|0.000 Atlas-SNP DIRAS3 9077 hgsc.bcm.edu hg19 1 68512696 68512696 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DIRAS3 NM_004675 exon2 c.C285T p.G95G GCCGTCGCCACTC . 137.0 70.0 110.0 0.0 . 31 . . Atlas-SNP RPE65 6121 hgsc.bcm.edu hg19 1 68905283 68905283 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RPE65 NM_000329 exon7 c.T686C p.F229S CAGGGGAATTGTA . 75.0 36.0 84.0 0.0 . 87 . . Atlas-SNP LRRC40 55631 hgsc.bcm.edu hg19 1 70614318 70614318 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRC40 NM_017768 exon14 c.A1555T p.T519S CAAGTGTGAAGAT . 86.0 32.0 111.0 0.0 . 66 . . Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71437417 71437417 + Splice_Site SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTGER3 NM_198719 exon5 c.1170-1G>A . CATTATCTGTTAG . 566.0 213.0 606.0 0.0 . 246 . . Atlas-SNP ST6GALNAC3 256435 hgsc.bcm.edu hg19 1 77094388 77094388 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ST6GALNAC3 NM_152996 exon5 c.C815T p.A272V AACATGCCCCATA . 87.0 39.0 77.0 0.0 . 71 . . Atlas-SNP RBMXL1 494115 hgsc.bcm.edu hg19 1 89449438 89449438 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001162536 exon3 c.T72C p.L24L TGTTTCAAGAGCT . 291.0 35.0 337.0 0.0 . . . . Atlas-SNP CDC7 8317 hgsc.bcm.edu hg19 1 91977470 91977470 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDC7 NM_001134419 exon6 c.C562T p.R188C AATAGGCGCCTGA . 433.0 24.0 391.0 0.0 . 74 . . Atlas-SNP SLC30A7 148867 hgsc.bcm.edu hg19 1 101379226 101379226 + Silent SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC30A7 NM_133496 exon6 c.A519T p.G173G CCACGGACACAGT . 197.0 90.0 188.0 0.0 . 33 . . Atlas-SNP NTNG1 22854 hgsc.bcm.edu hg19 1 108023282 108023282 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NTNG1 NM_001113226 exon8 c.C1440T p.C480C GACGTGCCACAAC . 99.0 42.0 100.0 0.0 . 274 . . Atlas-SNP FAM102B 284611 hgsc.bcm.edu hg19 1 109171126 109171126 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM102B NM_001010883 exon8 c.T762C p.C254C GCCATGTGATGAA . 167.0 68.0 139.0 0.0 . 49 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109801459 109801459 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CELSR2 NM_001408 exon2 c.A3716G p.N1239S GCGAGAACTACAT . 149.0 36.0 128.0 0.0 . 228 . . Atlas-SNP EPS8L3 79574 hgsc.bcm.edu hg19 1 110300674 110300674 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPS8L3 NM_139053 exon9 c.C727T p.L243L GGTTCAGCACTTC . 59.0 22.0 55.0 0.0 . 73 . . Atlas-SNP VANGL1 81839 hgsc.bcm.edu hg19 1 116226598 116226598 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VANGL1 NM_138959 exon6 c.C980T p.A327V CCCGGGCCATGAT . 503.0 219.0 501.0 1.0 . 65 . . Atlas-SNP ZNF697 90874 hgsc.bcm.edu hg19 1 120166363 120166363 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF697 NM_001080470 exon3 c.C603T p.G201G GGCGGCGCCAGGA . 59.0 24.0 79.0 0.0 . 26 . . Atlas-SNP ZNF697 90874 hgsc.bcm.edu hg19 1 120166521 120166521 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF697 NM_001080470 exon3 c.C445A p.L149M TCCCCAGGGAGAG . 193.0 77.0 190.0 0.0 . 26 . . Atlas-SNP NOTCH2 4853 hgsc.bcm.edu hg19 1 120468048 120468048 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NOTCH2 NM_024408 exon25 c.C4391T p.A1464V CAGTTGGCCCAGG . 138.0 51.0 175.0 0.0 . 348 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 145075655 145075655 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PDE4DIP NM_022359 exon1 c.G208T p.A70S CCGCAGCTGCTTC . 184.0 31.0 224.0 0.0 . 817 . . Atlas-SNP NUDT17 200035 hgsc.bcm.edu hg19 1 145589355 145589355 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NUDT17 NM_001012758 exon1 c.G73C p.G25R GGAGGCCACACAC . 163.0 17.0 151.0 0.0 . 25 . . Atlas-SNP GJA5 2702 hgsc.bcm.edu hg19 1 147230336 147230336 + Nonsense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GJA5 NM_005266 exon2 c.T1011A p.Y337X ACTATGATAGCCA . 112.0 36.0 92.0 0.0 . 64 . . Atlas-SNP GJA8 2703 hgsc.bcm.edu hg19 1 147380385 147380385 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GJA8 NM_005267 exon2 c.C303T p.R101R CGTCCGCATGGAG . 89.0 39.0 47.0 0.0 . 108 . . Atlas-SNP TARS2 80222 hgsc.bcm.edu hg19 1 150470091 150470091 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TARS2 NM_025150 exon10 c.A1106G p.E369G ACTGGGAGCATTA . 78.0 16.0 79.0 0.0 . 91 . . Atlas-SNP ANXA9 8416 hgsc.bcm.edu hg19 1 150958820 150958820 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANXA9 NM_003568 exon8 c.G481A p.V161M TTCCAGGTGGAGG . 97.0 32.0 102.0 0.0 . 28 . . Atlas-SNP LCE1A 353131 hgsc.bcm.edu hg19 1 152799972 152799972 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LCE1A NM_178348 exon1 c.G24A p.Q8Q CCAGCAGCAGTGC . 366.0 20.0 352.0 0.0 . 23 . . Atlas-SNP GATAD2B 57459 hgsc.bcm.edu hg19 1 153784289 153784289 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GATAD2B NM_020699 exon10 c.A1566G p.I522M TGTGGGTATGCCA . 112.0 44.0 99.0 0.0 . 62 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153912225 153912225 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DENND4B NM_014856 exon12 c.G1659T p.E553D CACTGCCTCGTAG . 64.0 26.0 94.0 0.0 . 210 . . Atlas-SNP UBE2Q1 55585 hgsc.bcm.edu hg19 1 154527247 154527247 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 UBE2Q1,NS,carcinoma,0,1 UBE2Q1 NM_017582 exon4 c.C552T p.D184D AGACACGTCTTCC . 270.0 98.0 268.0 0.0 . 35 . . Atlas-SNP CHRNB2 1141 hgsc.bcm.edu hg19 1 154542783 154542783 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHRNB2 NM_000748 exon4 c.T305C p.M102T ACAACATGAAGAA . 123.0 48.0 127.0 0.0 . 74 . . Atlas-SNP PKLR 5313 hgsc.bcm.edu hg19 1 155261612 155261612 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PKLR NM_000298 exon10 c.G1553A p.R518H GGTTCACGGTAAA . 267.0 99.0 273.0 0.0 . 70 . . Atlas-SNP FDPS 2224 hgsc.bcm.edu hg19 1 155282158 155282158 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FDPS NM_001135821 exon4 c.C452T p.A151V AGCGGGCCTGGAC . 65.0 6.0 61.0 0.0 . 41 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155450461 155450461 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ASH1L NM_018489 exon3 c.C2200A p.L734I ATTCTAGCCCTTT . 75.0 34.0 73.0 0.0 . 279 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155452064 155452064 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ASH1L NM_018489 exon3 c.C597T p.S199S ATCCCGGCTACCA . 117.0 5.0 117.0 0.0 . 279 . . Atlas-SNP LMNA 4000 hgsc.bcm.edu hg19 1 156106161 156106161 + Silent SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LMNA NM_170707 exon7 c.G1314T p.G438G TAGCGGGCGCGTG . 77.0 18.0 94.0 0.0 . 31 . . Atlas-SNP INSRR 3645 hgsc.bcm.edu hg19 1 156814001 156814001 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . INSRR NM_014215 exon15 c.C2809A p.L937I CAGCAAGAACGAT . 75.0 42.0 75.0 0.0 . 309 . . Atlas-SNP ARHGEF11 9826 hgsc.bcm.edu hg19 1 156914894 156914894 + Missense_Mutation SNP G G A rs140673049 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGEF11 NM_198236 exon30 c.C2908T p.R970C GGTGGCGGTTCTC . 99.0 6.0 108.0 0.0 . 168 . G|1.000;A|0.000 Atlas-SNP FCRL1 115350 hgsc.bcm.edu hg19 1 157772454 157772454 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FCRL1 NM_001159397 exon4 c.G320T p.R107M GGGACCCCTGTGT . 72.0 31.0 68.0 0.0 . 164 . . Atlas-SNP OR10R2 343406 hgsc.bcm.edu hg19 1 158449993 158449993 + Missense_Mutation SNP C C T rs200874337 bycluster TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 OR10R2,NS,NS,0,1 OR10R2 NM_001004472 exon1 c.C326T p.A109V CTGTGGCCAGGAC . 99.0 34.0 96.0 0.0 . 81 . C|0.999;T|0.001 Atlas-SNP IGSF9 57549 hgsc.bcm.edu hg19 1 159897228 159897228 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IGSF9 NM_001135050 exon21 c.C3447A p.F1149L GGCCAGGAATTCC . 324.0 111.0 332.0 0.0 . 123 . . Atlas-SNP ATP1A2 477 hgsc.bcm.edu hg19 1 160109518 160109518 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATP1A2 NM_000702 exon21 c.A2929T p.M977L CTCCGCATGTACC . 88.0 37.0 84.0 0.0 . 167 . . Atlas-SNP SLAMF1 6504 hgsc.bcm.edu hg19 1 160604472 160604472 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SLAMF1,NS,carcinoma,0,1 SLAMF1 NM_003037 exon3 c.G631A p.V211M TGCTCACGGTGCA . 146.0 73.0 168.0 1.0 . 74 . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171501935 171501935 + Missense_Mutation SNP G G C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_015172 exon12 c.G1702C p.E568Q GAACTAGAACGGC . 282.0 104.0 286.0 0.0 . . . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171514805 171514805 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_015172 exon17 c.T4945C p.F1649L TCACAGTTTGATC . 727.0 259.0 691.0 1.0 . . . . Atlas-SNP RABGAP1L 9910 hgsc.bcm.edu hg19 1 174606551 174606551 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RABGAP1L NM_014857 exon14 c.T1749C p.H583H TATTCATCGTACA . 422.0 175.0 388.0 1.0 . 103 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181680167 181680167 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CACNA1E_ENST00000367573,colon,carcinoma,0,2 CACNA1E NM_001205293 exon8 c.G1133A p.R378H TTGAGCGTGAGCT . 73.0 33.0 96.0 0.0 . 778 . . Atlas-SNP LAMC2 3918 hgsc.bcm.edu hg19 1 183204833 183204833 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LAMC2 NM_005562 exon16 c.G2424A p.P808P TAGCCCGGACGGT . 196.0 96.0 171.0 0.0 . 113 . . Atlas-SNP EDEM3 80267 hgsc.bcm.edu hg19 1 184688333 184688333 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EDEM3 NM_025191 exon11 c.T1124C p.L375S TGATATAACATTT . 103.0 40.0 110.0 0.0 . 63 . . Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186276994 186276994 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PRG4 NM_005807 exon7 c.A2143G p.T715A GCTCCAACTACCC . 114.0 8.0 99.0 0.0 . 259 . . Atlas-SNP F13B 2165 hgsc.bcm.edu hg19 1 197026474 197026474 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . F13B NM_001994 exon6 c.T927C p.H309H TGACCCATGGATC . 196.0 11.0 176.0 0.0 . 137 . . Atlas-SNP ASPM 259266 hgsc.bcm.edu hg19 1 197113197 197113197 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ASPM NM_001206846 exon2 c.A331G p.T111A GTGGTGTCCAGTT . 180.0 56.0 160.0 0.0 . 444 . . Atlas-SNP NAV1 89796 hgsc.bcm.edu hg19 1 201752586 201752586 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAV1 NM_020443 exon7 c.G2410A p.V804I GACAAGGTCAACT . 108.0 42.0 115.0 0.0 . 143 . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207648316 207648316 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CR2 NM_001006658 exon14 c.A2471T p.D824V GAAGTGATTCTAA . 106.0 47.0 97.0 0.0 . 164 . . Atlas-SNP ANGEL2 90806 hgsc.bcm.edu hg19 1 213178563 213178563 + Silent SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANGEL2 NM_144567 exon5 c.A946C p.R316R CTCGCCTTGGATT . 87.0 40.0 84.0 0.0 . 45 . . Atlas-SNP GPATCH2 55105 hgsc.bcm.edu hg19 1 217688182 217688182 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPATCH2 NM_018040 exon6 c.C1148T p.P383L GAATCCGGGGAAA . 435.0 177.0 399.0 0.0 . 53 . . Atlas-SNP GPATCH2 55105 hgsc.bcm.edu hg19 1 217793392 217793392 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPATCH2 NM_018040 exon2 c.T506A p.V169E AGATCTACTGCCA . 56.0 25.0 53.0 0.0 . 53 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220387265 220387265 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RAB3GAP2 NM_012414 exon3 c.T237C p.V79V GGATAAAACACAA . 88.0 6.0 79.0 0.0 . 120 . . Atlas-SNP BROX 148362 hgsc.bcm.edu hg19 1 222902172 222902172 + Splice_Site SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BROX NM_144695 exon9 c.756+2T>C . CTTATGTAAGTAT . 72.0 34.0 57.0 0.0 . 45 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225519251 225519251 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAH14 NM_001373 exon63 c.T9557C p.V3186A CGTCAGTCTTACT . 251.0 98.0 287.0 0.0 . 300 . . Atlas-SNP PARP1 142 hgsc.bcm.edu hg19 1 226556018 226556018 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PARP1 NM_001618 exon16 c.T2159A p.V720E TGAGACACCGCCT . 72.0 21.0 90.0 0.0 . 100 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228399645 228399645 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OBSCN NM_001271223 exon2 c.C161T p.A54V CCGGCGCGCGCTT . 136.0 60.0 176.0 0.0 . 2142 . . Atlas-SNP URB2 9816 hgsc.bcm.edu hg19 1 229786983 229786983 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . URB2 NM_014777 exon8 c.T4151C p.V1384A TACAGGTAATGCT . 140.0 6.0 137.0 0.0 . 152 . . Atlas-SNP CAPN9 10753 hgsc.bcm.edu hg19 1 230916293 230916293 + Silent SNP C C T rs200514450 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CAPN9 NM_006615 exon11 c.C1320T p.H440H ATACCACGCTTCT . 125.0 50.0 123.0 0.0 . 116 . C|0.999;T|0.001 Atlas-SNP SPRTN 83932 hgsc.bcm.edu hg19 1 231488843 231488843 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_032018 exon5 c.T1206A p.D402E TGAAGATACATTC . 294.0 134.0 320.0 1.0 . . . . Atlas-SNP SIPA1L2 57568 hgsc.bcm.edu hg19 1 232600968 232600968 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIPA1L2 NM_020808 exon7 c.C2438T p.A813V TTCTCCGCCAGAT . 151.0 62.0 135.0 0.0 . 218 . . Atlas-SNP ERO1LB 56605 hgsc.bcm.edu hg19 1 236445027 236445027 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ERO1LB NM_019891 exon1 c.G57C p.Q19H CAGCAGCTGCACC . 108.0 6.0 113.0 0.0 . 48 . . Atlas-SNP MTR 4548 hgsc.bcm.edu hg19 1 236959039 236959039 + Splice_Site SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MTR NM_000254 exon1 c.34+2T>C . ACCCGGTAACGCT . 65.0 27.0 67.0 0.0 . 127 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237951398 237951398 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RYR2 NM_001035 exon92 c.T13439A p.F4480Y CAGCATTCTGGAA . 813.0 341.0 827.0 1.0 . 1273 . . Atlas-SNP FH 2271 hgsc.bcm.edu hg19 1 241680550 241680550 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FH NM_000143 exon2 c.T199C p.Y67H CATAATACTTATC . 112.0 45.0 102.0 0.0 . 64 . . Atlas-SNP ZNF695 57116 hgsc.bcm.edu hg19 1 247150429 247150429 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF695 NM_020394 exon4 c.C1388T p.P463L TTGTAGGGTTTCT . 80.0 40.0 67.0 0.0 . 55 . . Atlas-SNP ZNF496 84838 hgsc.bcm.edu hg19 1 247464566 247464566 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF496 NM_032752 exon9 c.C1019T p.P340L GATCGCGGGTTGC . 38.0 13.0 34.0 0.0 . 80 . . Atlas-SNP OR2T1 26696 hgsc.bcm.edu hg19 1 248569984 248569984 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR2T1 NM_030904 exon1 c.A689G p.E230G TCTGTGAGGCACC . 109.0 32.0 93.0 0.0 . 89 . . Atlas-SNP OR2T2 401992 hgsc.bcm.edu hg19 1 248616797 248616797 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR2T2 NM_001004136 exon1 c.G699T p.E233D TGCTGAGGGCCGG . 245.0 11.0 248.0 0.0 . 73 . . Atlas-SNP ZNF672 79894 hgsc.bcm.edu hg19 1 249142190 249142190 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF672 NM_024836 exon4 c.C717T p.S239S GGAGAGCGCCACG . 61.0 25.0 81.0 0.0 . 32 . . Atlas-SNP PXDN 7837 hgsc.bcm.edu hg19 2 1670259 1670259 + Splice_Site SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PXDN NM_012293 exon11 c.1019-1G>A . GTCGAGCTGTCAC . 167.0 73.0 190.0 0.0 . 255 . . Atlas-SNP TRAPPC12 51112 hgsc.bcm.edu hg19 2 3469411 3469411 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_016030 exon9 c.A1721G p.Y574C TCAAGTATTACCC . 82.0 15.0 101.0 0.0 . . . . Atlas-SNP NBAS 51594 hgsc.bcm.edu hg19 2 15359052 15359052 + Missense_Mutation SNP G G A rs200331420 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NBAS NM_015909 exon48 c.C6277T p.R2093W AAGGCCGCAGCCA . 291.0 113.0 293.0 0.0 . 246 . G|0.999;C|0.001 Atlas-SNP NBAS 51594 hgsc.bcm.edu hg19 2 15607895 15607895 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NBAS NM_015909 exon18 c.T1911C p.S637S GGAGATACTGTCA . 338.0 127.0 322.0 0.0 . 246 . . Atlas-SNP DDX1 1653 hgsc.bcm.edu hg19 2 15768807 15768807 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DDX1 NM_004939 exon22 c.G1805A p.R602Q TACATCGAATTGG . 147.0 61.0 166.0 0.0 . 70 . . Atlas-SNP MYCN 4613 hgsc.bcm.edu hg19 2 16082705 16082705 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYCN NM_005378 exon2 c.C519T p.A173A CGGGGCCGCCCTG . 92.0 35.0 102.0 0.0 . 63 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21265319 21265319 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . APOB NM_000384 exon3 c.A151G p.K51E TGTACTTCCGGAG . 139.0 59.0 159.0 0.0 . 761 . . Atlas-SNP CCDC164 92749 hgsc.bcm.edu hg19 2 26676396 26676396 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC164 NM_145038 exon14 c.T1898C p.V633A CCTTCGTCATGGG . 143.0 57.0 156.0 0.0 . 84 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32696085 32696085 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BIRC6 NM_016252 exon32 c.T6485C p.V2162A CAGGAGTACTAGA . 126.0 55.0 121.0 0.0 . 838 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32696135 32696135 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BIRC6 NM_016252 exon32 c.C6535T p.L2179L AGGTTGCTGGATT . 165.0 75.0 134.0 0.0 . 838 . . Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33500964 33500964 + Missense_Mutation SNP G G A rs142262862 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LTBP1 NM_206943 exon18 c.G2966A p.R989H GGTACCGCATGAC . 65.0 17.0 85.0 0.0 . 317 . G|1.000;T|0.000 Atlas-SNP FAM98A 25940 hgsc.bcm.edu hg19 2 33810066 33810066 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM98A NM_015475 exon8 c.A1334G p.D445G CTATTGTCCTGCT . 102.0 34.0 76.0 0.0 . 42 . . Atlas-SNP SOCS5 9655 hgsc.bcm.edu hg19 2 46986966 46986966 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SOCS5 NM_144949 exon2 c.T1297C p.W433R GAGCAGTGGAATC . 83.0 4.0 173.0 0.0 . 62 . . Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61633160 61633160 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . USP34 NM_014709 exon3 c.G235T p.D79Y GCTGGTCCCGGAG . 65.0 46.0 146.0 0.0 . 334 . . Atlas-SNP TMEM17 200728 hgsc.bcm.edu hg19 2 62733210 62733210 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM17 NM_198276 exon1 c.T55C p.F19L CACTGAACACGGC . 113.0 74.0 195.0 0.0 . 19 . . Atlas-SNP ADD2 119 hgsc.bcm.edu hg19 2 70900405 70900405 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADD2 NM_017488 exon15 c.A1795T p.S599C CAACGCTGAAGAA . 77.0 60.0 151.0 0.0 . 261 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71650049 71650049 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF638 NM_014497 exon22 c.T3405G p.I1135M CAGCATTCAAACA . 122.0 89.0 210.0 0.0 . 179 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71740432 71740432 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DYSF NM_001130982 exon6 c.T523C p.Y175H ACGAGATACTCTG . 131.0 94.0 249.0 0.0 . 536 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71755509 71755509 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DYSF NM_001130982 exon14 c.A1358C p.E453A TTGTGGAGGTCAG . 71.0 49.0 122.0 0.0 . 536 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71766312 71766312 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DYSF_ENST00000410020,bladder,carcinoma,0,2 DYSF NM_001130982 exon17 c.G1519A p.V507M GACATCGTGGCTA . 47.0 33.0 63.0 0.0 . 536 . . Atlas-SNP DCTN1 1639 hgsc.bcm.edu hg19 2 74593128 74593128 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DCTN1,right_upper_lobe,carcinoma,-2,1 DCTN1 NM_004082 exon24 c.G2778A p.L926L AGCCCGCAGTTCA . 81.0 37.0 60.0 0.0 . 110 . . Atlas-SNP M1AP 130951 hgsc.bcm.edu hg19 2 74789369 74789369 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_138804 exon8 c.A1256G p.H419R TCATCATGTGGGT . 121.0 21.0 112.0 0.0 . . . . Atlas-SNP LRRTM4 80059 hgsc.bcm.edu hg19 2 77746553 77746553 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRTM4 NM_024993 exon3 c.T442C p.L148L ATTGCAATGTCTG . 162.0 71.0 180.0 0.0 . 334 . . Atlas-SNP GGCX 2677 hgsc.bcm.edu hg19 2 85788544 85788544 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GGCX NM_000821 exon1 c.T8C p.V3A GCAGACACCGCCA . 194.0 77.0 217.0 0.0 . 44 . . Atlas-SNP STARD7 56910 hgsc.bcm.edu hg19 2 96852600 96852600 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STARD7 NM_020151 exon8 c.T981A p.N327K CTCCATATTCTTG . 161.0 74.0 152.0 0.0 . 49 . . Atlas-SNP TMEM131 23505 hgsc.bcm.edu hg19 2 98382614 98382614 + Silent SNP C C T rs376329900 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM131 NM_015348 exon35 c.G4686A p.P1562P CCACTCCGGTGGA . 213.0 86.0 238.0 0.0 . 258 . . Atlas-SNP MGAT4A 11320 hgsc.bcm.edu hg19 2 99294779 99294779 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MGAT4A NM_012214 exon3 c.A250T p.N84Y ACTTATTCAACGC . 63.0 21.0 72.0 0.0 . 51 . . Atlas-SNP SLC9A2 6549 hgsc.bcm.edu hg19 2 103311560 103311560 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC9A2 NM_003048 exon7 c.T1574G p.F525C ACAACTTTTGGAG . 109.0 40.0 116.0 0.0 . 112 . . Atlas-SNP BUB1 699 hgsc.bcm.edu hg19 2 111416240 111416240 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 BUB1,colon,NS,0,1 BUB1 NM_004336 exon12 c.G1356A p.T452T GGATGGCGTTGCC . 114.0 45.0 114.0 0.0 . 91 . . Atlas-SNP RALB 5899 hgsc.bcm.edu hg19 2 121036312 121036312 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RALB NM_002881 exon2 c.C72T p.G24G CGGAGGCGTTGGC . 68.0 25.0 97.0 0.0 . 27 . . Atlas-SNP GLI2 2736 hgsc.bcm.edu hg19 2 121746146 121746146 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GLI2 NM_005270 exon13 c.C2656T p.Q886X GCGCAGCAGTACA . 158.0 67.0 138.0 0.0 . 187 . . Atlas-SNP WDR33 55339 hgsc.bcm.edu hg19 2 128471170 128471170 + Missense_Mutation SNP G G A rs373594035 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 WDR33,NS,carcinoma,0,1 WDR33 NM_018383 exon18 c.C3295T p.R1099C CTCTGCGCCCTCG . 81.0 25.0 132.0 1.0 . 136 . . Atlas-SNP CCDC74B 91409 hgsc.bcm.edu hg19 2 130897479 130897479 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC74B NM_207310 exon7 c.G992A p.S331N GAGAGGCTCTTGG . 124.0 39.0 125.0 0.0 . 27 . . Atlas-SNP CCNT2 905 hgsc.bcm.edu hg19 2 135711218 135711218 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCNT2 NM_058241 exon9 c.A1193T p.D398V GACCTGACAAAAT . 154.0 107.0 286.0 0.0 . 98 . . Atlas-SNP ZRANB3 84083 hgsc.bcm.edu hg19 2 136029454 136029454 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZRANB3 NM_032143 exon10 c.C1090T p.R364C TGTAACGAGTCTA . 39.0 29.0 65.0 0.0 . 109 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141232790 141232790 + Missense_Mutation SNP A A T rs377526659 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRP1B NM_018557 exon60 c.T9542A p.I3181K TAATCTATTGTTA . 131.0 99.0 190.0 0.0 . 1315 . . Atlas-SNP ARHGAP15 55843 hgsc.bcm.edu hg19 2 144313999 144313999 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGAP15 NM_018460 exon11 c.T948C p.Y316Y AATATATCGAGTT . 93.0 72.0 131.0 0.0 . 99 . . Atlas-SNP ACVR2A 92 hgsc.bcm.edu hg19 2 148674907 148674907 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ACVR2A NM_001616 exon6 c.A728T p.H243L TGAAGCATGAGAA . 125.0 91.0 244.0 0.0 . 125 . . Atlas-SNP PKP4 8502 hgsc.bcm.edu hg19 2 159526240 159526240 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PKP4 NM_001005476 exon17 c.G2737A p.A913T AAATACGCCATGC . 114.0 73.0 270.0 0.0 . 133 . . Atlas-SNP COBLL1 22837 hgsc.bcm.edu hg19 2 165556006 165556006 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COBLL1 NM_014900 exon11 c.A1581C p.E527D GTGTGGTTCTCTG . 39.0 34.0 75.0 0.0 . 122 . . Atlas-SNP TTC21B 79809 hgsc.bcm.edu hg19 2 166747435 166747435 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TTC21B NM_024753 exon23 c.T3014C p.V1005A CTTGGGACATCCT . 142.0 6.0 250.0 0.0 . 130 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166850833 166850833 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SCN1A NM_001165963 exon25 c.A4675C p.M1559L CCACCATCATTGT . 125.0 12.0 225.0 0.0 . 641 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166850895 166850895 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SCN1A NM_001165963 exon25 c.T4613C p.V1538A CTGGTTACGAAGT . 93.0 34.0 190.0 0.0 . 641 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168103817 168103817 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . XIRP2 NM_152381 exon9 c.A5915G p.N1972S AGAGGAACAAAAA . 167.0 67.0 245.0 0.0 . 914 . . Atlas-SNP FASTKD1 79675 hgsc.bcm.edu hg19 2 170396679 170396679 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FASTKD1 NM_024622 exon10 c.T1827A p.D609E AAAAGGATCCAAT . 342.0 243.0 532.0 2.0 . 86 . . Atlas-SNP FASTKD1 79675 hgsc.bcm.edu hg19 2 170403008 170403008 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FASTKD1 NM_024622 exon8 c.C1421T p.A474V TGTTTCGCAGTCA . 148.0 111.0 265.0 1.0 . 86 . . Atlas-SNP KIAA1715 80856 hgsc.bcm.edu hg19 2 176802232 176802232 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1715 NM_030650 exon12 c.T894C p.C298C GTAGGCACATCGA . 56.0 5.0 97.0 0.0 . 61 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179411087 179411087 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TTN NM_001267550 exon342 c.T94971A p.D31657E ACAGAGATCTAGC . 39.0 27.0 74.0 0.0 . 18412 . . Atlas-SNP ITGA4 3676 hgsc.bcm.edu hg19 2 182399041 182399041 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITGA4 NM_000885 exon26 c.T2827C p.F943L ACAGGTTTTCCAG . 283.0 191.0 537.0 2.0 . 142 . . Atlas-SNP FAM171B 165215 hgsc.bcm.edu hg19 2 187626496 187626496 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM171B NM_177454 exon8 c.A1427G p.N476S AAAATAATTACTC . 122.0 10.0 126.0 0.0 . 146 . . Atlas-SNP SLC40A1 30061 hgsc.bcm.edu hg19 2 190426694 190426694 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC40A1 NM_014585 exon8 c.C1626T p.A542A ATTTTGGGCAAAT . 248.0 100.0 224.0 0.0 . 51 . . Atlas-SNP ANKAR 150709 hgsc.bcm.edu hg19 2 190585420 190585420 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANKAR NM_144708 exon12 c.C2542T p.R848W TGTATACGGGTAT . 113.0 5.0 121.0 0.0 . 184 . . Atlas-SNP C2orf88 84281 hgsc.bcm.edu hg19 2 191064799 191064799 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C2orf88 NM_001042519 exon2 c.T213C p.C71C CTTGTGTGATGCC . 111.0 42.0 114.0 0.0 . 7 . . Atlas-SNP NAB1 4664 hgsc.bcm.edu hg19 2 191524471 191524471 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAB1 NM_005966 exon4 c.C569T p.A190V GTGAGGCGCTGGA . 243.0 93.0 211.0 0.0 . 31 . . Atlas-SNP GTF3C3 9330 hgsc.bcm.edu hg19 2 197653948 197653948 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GTF3C3 NM_001206774 exon6 c.G873A p.Q291Q AGCCAGCTGCATA . 139.0 49.0 158.0 0.0 . 96 . . Atlas-SNP KCTD18 130535 hgsc.bcm.edu hg19 2 201355178 201355178 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCTD18 NM_152387 exon7 c.C926T p.A309V GCTGTCGCCCCAG . 50.0 27.0 72.0 0.0 . 44 . . Atlas-SNP ALS2CR8 79800 hgsc.bcm.edu hg19 2 203846349 203846349 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ALS2CR8 NM_024744 exon15 c.C1630T p.P544S CCTGAGCCAACCC . 603.0 222.0 703.0 2.0 . 56 . . Atlas-SNP ABI2 10152 hgsc.bcm.edu hg19 2 204281668 204281668 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABI2 NM_005759 exon9 c.A1116G p.E372E GGAAGAACCAGTC . 78.0 23.0 69.0 0.0 . 44 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207171520 207171520 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZDBF2 NM_020923 exon5 c.G2268A p.P756P TGACCCGCCTCTT . 73.0 26.0 74.0 0.0 . 531 . . Atlas-SNP PLEKHM3 389072 hgsc.bcm.edu hg19 2 208725985 208725985 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PLEKHM3 NM_001080475 exon7 c.T1952C p.V651A TCTATTACCTGCA . 112.0 57.0 108.0 0.0 . 101 . . Atlas-SNP CRYGC 1420 hgsc.bcm.edu hg19 2 208992994 208992994 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CRYGC NM_020989 exon3 c.G458A p.R153Q TGGCACCGCCTGT . 139.0 45.0 128.0 0.0 . 28 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215852484 215852484 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABCA12 NM_173076 exon27 c.C3863T p.P1288L AGAATTGGAAAAT . 236.0 95.0 262.0 0.0 . 368 . . Atlas-SNP ATIC 471 hgsc.bcm.edu hg19 2 216197219 216197219 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATIC NM_004044 exon8 c.T803C p.V268A AACATGTCAGCCC . 65.0 22.0 88.0 0.0 . 84 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216259426 216259426 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FN1 NM_212476 exon24 c.A3621T p.R1207S GGTAATTCTATAA . 73.0 30.0 56.0 0.0 . 521 . . Atlas-SNP C2orf62 375307 hgsc.bcm.edu hg19 2 219222348 219222348 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C2orf62 NM_198559 exon3 c.G210A p.V70V TGAGGTGCAGAGA . 58.0 24.0 76.0 0.0 . 28 . . Atlas-SNP STK36 27148 hgsc.bcm.edu hg19 2 219563382 219563382 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STK36 NM_015690 exon26 c.C3115T p.R1039C CTCACACGCCTGG . 119.0 49.0 108.0 0.0 . 111 . . Atlas-SNP CNPPD1 27013 hgsc.bcm.edu hg19 2 220037323 220037323 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CNPPD1 NM_015680 exon8 c.C1218T p.F406F GAAAACGAAAGAC . 76.0 24.0 82.0 0.0 . 22 . . Atlas-SNP ZFAND2B 130617 hgsc.bcm.edu hg19 2 220073041 220073041 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZFAND2B NM_138802 exon5 c.A498G p.Q166Q AAGTCAAACCATG . 147.0 45.0 190.0 0.0 . 28 . . Atlas-SNP TUBA4A 7277 hgsc.bcm.edu hg19 2 220115838 220115838 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TUBA4A NM_006000 exon4 c.C583A p.L195M GCTCCAGGGTGGT . 88.0 9.0 89.0 0.0 . 96 . . Atlas-SNP OBSL1 23363 hgsc.bcm.edu hg19 2 220427202 220427202 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OBSL1 NM_001173431 exon8 c.G2875A p.A959T GGACAGCGGGCAG . 116.0 5.0 113.0 0.0 . 120 . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230652245 230652245 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIP12 NM_004238 exon32 c.T4746C p.V1582V AGGTGCAACTCTG . 167.0 71.0 131.0 0.0 . 207 . . Atlas-SNP NMUR1 10316 hgsc.bcm.edu hg19 2 232393179 232393179 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 NMUR1,NS,carcinoma,0,1 NMUR1 NM_006056 exon2 c.G553A p.V185I CCCAGACGGCCCC . 99.0 58.0 94.0 0.0 . 46 . . Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233612329 233612329 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GIGYF2 NM_001103146 exon4 c.C46T p.R16X AGGCTCCGAGCTC . 95.0 4.0 82.0 0.0 . 288 . . Atlas-SNP NEU2 4759 hgsc.bcm.edu hg19 2 233899090 233899090 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NEU2 NM_005383 exon2 c.A466G p.T156A TGGTCCACCTTTG . 60.0 6.0 69.0 0.0 . 42 . . Atlas-SNP HDAC4 9759 hgsc.bcm.edu hg19 2 240029867 240029867 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HDAC4 NM_006037 exon15 c.A1976G p.D659G AGCGTGTCATACA . 158.0 57.0 208.0 0.0 . 127 . . Atlas-SNP HDLBP 3069 hgsc.bcm.edu hg19 2 242174657 242174657 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HDLBP NM_005336 exon23 c.T3023C p.V1008A GCCGGGACATGTA . 47.0 20.0 52.0 0.0 . 118 . . Atlas-SNP SSUH2 51066 hgsc.bcm.edu hg19 3 8671370 8671370 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001256748 exon7 c.G568A p.G190S GGCAGCCGCTGCA . 59.0 23.0 86.0 0.0 . . . . Atlas-SNP TMEM40 55287 hgsc.bcm.edu hg19 3 12790175 12790175 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM40 NM_018306 exon3 c.T190C p.S64P ATGAAGAAGATGA . 32.0 18.0 27.0 0.0 . 22 . . Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13368741 13368741 + Missense_Mutation SNP C C T rs199638243 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NUP210 NM_024923 exon32 c.G4483A p.A1495T CAGTGGCCAGACA . 48.0 8.0 67.0 0.0 . 182 . . Atlas-SNP C3orf20 84077 hgsc.bcm.edu hg19 3 14724484 14724484 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C3orf20 NM_032137 exon3 c.C264T p.V88V GCAGGTCCCCACA . 139.0 57.0 127.0 0.0 . 109 . . Atlas-SNP NR2C2 7182 hgsc.bcm.edu hg19 3 15057748 15057748 + Silent SNP C C T rs369008989 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NR2C2 NM_003298 exon5 c.C420T p.G140G CTGTGGCGACAAA . 113.0 39.0 160.0 0.0 . 44 . . Atlas-SNP ZFYVE20 64145 hgsc.bcm.edu hg19 3 15116270 15116270 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZFYVE20 NM_022340 exon14 c.G1374A p.P458P GAGGAGCGGGTCT . 100.0 41.0 99.0 0.0 . 61 . . Atlas-SNP DAZL 1618 hgsc.bcm.edu hg19 3 16639957 16639957 + Splice_Site SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DAZL NM_001351 exon3 c.150+2T>C . TACAATACCCTAA . 41.0 20.0 56.0 0.0 . 23 . . Atlas-SNP UBE2E2 7325 hgsc.bcm.edu hg19 3 23631290 23631290 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UBE2E2 NM_152653 exon6 c.G574A p.A192T CGGATGGCCAGAC . 347.0 141.0 364.0 0.0 . 24 . . Atlas-SNP PDCD6IP 10015 hgsc.bcm.edu hg19 3 33885697 33885697 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PDCD6IP NM_001162429 exon11 c.T1468C p.Y490H GAACTGTATAAGC . 573.0 205.0 641.0 0.0 . 62 . . Atlas-SNP TRANK1 9881 hgsc.bcm.edu hg19 3 36872532 36872532 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRANK1 NM_014831 exon21 c.G8410A p.A2804T CAATGGCCGGGTC . 102.0 7.0 116.0 0.0 . 398 . . Atlas-SNP TRANK1 9881 hgsc.bcm.edu hg19 3 36875360 36875360 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRANK1 NM_014831 exon21 c.A5582G p.Y1861C GCAGAATAGGAGA . 54.0 23.0 61.0 0.0 . 398 . . Atlas-SNP EPM2AIP1 9852 hgsc.bcm.edu hg19 3 37032816 37032816 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPM2AIP1 NM_014805 exon1 c.C1753T p.R585W CAACCCGAAACAG . 166.0 9.0 182.0 0.0 . 47 . . Atlas-SNP ITGA9 3680 hgsc.bcm.edu hg19 3 37821428 37821428 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITGA9 NM_002207 exon25 c.A2703G p.A901A AACAGCACACTGT . 78.0 25.0 109.0 0.0 . 98 . . Atlas-SNP WDR48 57599 hgsc.bcm.edu hg19 3 39125659 39125659 + Missense_Mutation SNP A A T rs112491258 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WDR48 NM_020839 exon12 c.A1187T p.E396V AAGTTGAAGATCT . 104.0 33.0 104.0 0.0 . 41 . A|0.500;G|0.500 Atlas-SNP CCR8 1237 hgsc.bcm.edu hg19 3 39374347 39374347 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCR8 NM_005201 exon2 c.C525A p.A175A AGTGGCCTCTGAA . 94.0 24.0 86.0 0.0 . 34 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266137 41266137 + Missense_Mutation SNP C C T rs121913409 bycluster TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CTNNB1,NS,carcinoma,+1,2 CTNNB1 NM_001098209 exon3 c.C134T p.S45F CTCCTTCTCTGAG . 182.0 67.0 157.0 0.0 . 4904 . . Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 46008574 46008574 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 FYCO1 NM_024513 exon8 c.A2252G p.K751R TGGCCTTTCTCTG . 39.0 11.0 55.0 0.0 . 115 . . Atlas-SNP CCR3 1232 hgsc.bcm.edu hg19 3 46307586 46307586 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCR3 NM_178328 exon3 c.C1000T p.R334C TACCTGCGCCACT . 77.0 37.0 58.0 0.0 . 52 . . Atlas-SNP TDGF1 6997 hgsc.bcm.edu hg19 3 46619474 46619474 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TDGF1 NM_003212 exon1 c.G15T p.K5N CAGGAAGATGGCC . 66.0 25.0 69.0 0.0 . 17 . . Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47047032 47047032 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NBEAL2 NM_015175 exon41 c.G6614T p.R2205L AGGCACGCCTGGA . 141.0 7.0 150.0 0.0 . 267 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48689914 48689914 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 CELSR3 NM_001407 exon11 c.G5707A p.G1903S CACTGCCGGGGGG . 93.0 42.0 109.0 0.0 . 237 . . Atlas-SNP RNF123 63891 hgsc.bcm.edu hg19 3 49751388 49751388 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RNF123 NM_022064 exon30 c.G2883A p.R961R GCAGCGGCCCTGG . 113.0 47.0 120.0 0.0 . 100 . . Atlas-SNP RBM5 10181 hgsc.bcm.edu hg19 3 50145541 50145541 + Nonsense_Mutation SNP T T A rs148691467 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBM5 NM_005778 exon13 c.T1080A p.Y360X CAGTTATCTGCAA . 111.0 30.0 120.0 0.0 . 76 . T|1.000;C|0.000 Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52382985 52382985 + Missense_Mutation SNP C C T rs371359758 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DNAH1_ENST00000420323,NS,carcinoma,0,2 DNAH1 NM_015512 exon13 c.C2188T p.R730W GAGCTACGGGCCA . 39.0 15.0 57.0 0.0 . 534 . . Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52428572 52428572 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAH1 NM_015512 exon67 c.A10718T p.D3573V GGCGAGACATCCT . 116.0 55.0 122.0 0.0 . 534 . . Atlas-SNP ITIH3 3699 hgsc.bcm.edu hg19 3 52840398 52840398 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ITIH3_ENST00000449956,NS,carcinoma,-1,1 ITIH3 NM_002217 exon18 c.C2032T p.R678C GTGCTGCGCCTTA . 65.0 27.0 48.0 1.0 . 132 . . Atlas-SNP LRTM1 57408 hgsc.bcm.edu hg19 3 54958759 54958759 + Missense_Mutation SNP G G A rs372086680 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRTM1 NM_020678 exon2 c.C491T p.A164V AGGAGCGCTCGAT . 100.0 46.0 136.0 0.0 . 52 . . Atlas-SNP WNT5A 7474 hgsc.bcm.edu hg19 3 55508545 55508545 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WNT5A NM_003392 exon4 c.G504A p.A168A GGGGCGCGCGGCG . 78.0 28.0 56.0 0.0 . 43 . . Atlas-SNP LRIG1 26018 hgsc.bcm.edu hg19 3 66449417 66449417 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRIG1 NM_015541 exon10 c.G1209A p.S403S CAGCCCCGAGAAT . 70.0 22.0 96.0 0.0 . 138 . . Atlas-SNP CADM2 253559 hgsc.bcm.edu hg19 3 85961549 85961549 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CADM2 NM_001167675 exon6 c.G556A p.A186T GAGGATGCAAATC . 464.0 176.0 465.0 1.0 . 195 . . Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89462400 89462400 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPHA3 NM_005233 exon10 c.T1872A p.D624E CATTGATAAAGTT . 160.0 60.0 164.0 0.0 . 501 . . Atlas-SNP ZBTB11 27107 hgsc.bcm.edu hg19 3 101383437 101383437 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZBTB11 NM_014415 exon5 c.A1745G p.Y582C AGGGCGTATCGTC . 121.0 43.0 138.0 0.0 . 77 . . Atlas-SNP CD47 961 hgsc.bcm.edu hg19 3 107798890 107798890 + Silent SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CD47 NM_198793 exon2 c.A348C p.V116V TTCTGTTACTTCA . 161.0 65.0 146.0 0.0 . 37 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111898494 111898494 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_183061 exon23 c.A2803G p.K935E AATCTTTCTCCTT . 85.0 38.0 62.0 0.0 . . . . Atlas-SNP CCDC80 151887 hgsc.bcm.edu hg19 3 112358126 112358126 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC80 NM_199511 exon2 c.C627T p.I209I CTCCAGGATCTGG . 99.0 31.0 85.0 0.0 . 100 . . Atlas-SNP SPICE1 152185 hgsc.bcm.edu hg19 3 113188014 113188014 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPICE1 NM_144718 exon8 c.T683C p.I228T GTTGCTATTTTCT . 151.0 31.0 118.0 0.0 . 130 . . Atlas-SNP ZBTB20 26137 hgsc.bcm.edu hg19 3 114070331 114070331 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ZBTB20,colon,carcinoma,0,1 ZBTB20 NM_001164342 exon4 c.C594T p.G198G CACATCGCCCACG . 76.0 9.0 89.0 0.0 . 157 . . Atlas-SNP HCLS1 3059 hgsc.bcm.edu hg19 3 121353148 121353148 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HCLS1 NM_005335 exon10 c.C809T p.A270V GTCACAGCCTTTC . 68.0 26.0 57.0 0.0 . 78 . . Atlas-SNP CSTA 1475 hgsc.bcm.edu hg19 3 122060396 122060396 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CSTA,NS,carcinoma,0,1 CSTA NM_005213 exon3 c.C279T p.D93D GGATGACGAGCTG . 174.0 29.0 163.0 0.0 . 11 . . Atlas-SNP EFCAB12 90288 hgsc.bcm.edu hg19 3 129137245 129137245 + Missense_Mutation SNP T T C rs116798859 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_207307 exon3 c.A533G p.Q178R TGGAGCTGGGGCA . 88.0 28.0 91.0 0.0 . . . T|0.975;G|0.025 Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129284250 129284250 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PLXND1,colon,carcinoma,0,1 PLXND1 NM_015103 exon25 c.G4454A p.R1485H TCTGTGCGCCGCA . 103.0 40.0 115.0 1.0 . 149 . . Atlas-SNP DNAJC13 23317 hgsc.bcm.edu hg19 3 132169658 132169658 + Silent SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAJC13 NM_015268 exon6 c.A504T p.G168G AGGAGGATTTTGT . 194.0 83.0 230.0 0.0 . 253 . . Atlas-SNP PPP2R3A 5523 hgsc.bcm.edu hg19 3 135825069 135825069 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPP2R3A NM_002718 exon13 c.C3234T p.N1078N TGAGAACGATGGG . 111.0 9.0 107.0 0.0 . 114 . . Atlas-SNP STAG1 10274 hgsc.bcm.edu hg19 3 136141653 136141653 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STAG1 NM_005862 exon18 c.A1790C p.Q597P AAATACTGTGGGA . 164.0 7.0 187.0 0.0 . 135 . . Atlas-SNP ZBTB38 253461 hgsc.bcm.edu hg19 3 141162007 141162007 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZBTB38 NM_001080412 exon8 c.A777G p.K259K AGCGAAACCGAAA . 112.0 39.0 109.0 0.0 . 92 . . Atlas-SNP GK5 256356 hgsc.bcm.edu hg19 3 141901813 141901813 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GK5 NM_001039547 exon10 c.A895T p.T299S AAAATGTCCCAGT . 119.0 43.0 128.0 0.0 . 45 . . Atlas-SNP ZIC1 7545 hgsc.bcm.edu hg19 3 147128096 147128096 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZIC1 NM_003412 exon1 c.C197T p.S66L TCACGTCGCAGGC . 92.0 34.0 90.0 0.0 . 141 . . Atlas-SNP CPA3 1359 hgsc.bcm.edu hg19 3 148599317 148599317 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CPA3 NM_001870 exon7 c.A585C p.K195N AACCAAAACTTAT . 111.0 43.0 100.0 0.0 . 75 . . Atlas-SNP GPR87 53836 hgsc.bcm.edu hg19 3 151012803 151012803 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPR87 NM_023915 exon3 c.A231G p.I77M ATAGAATATGAAG . 93.0 35.0 129.0 0.0 . 52 . . Atlas-SNP P2RY13 53829 hgsc.bcm.edu hg19 3 151046419 151046419 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . P2RY13 NM_176894 exon2 c.T425C p.F142S TTGAGGAATCTGT . 285.0 89.0 246.0 0.0 . 80 . . Atlas-SNP P2RY1 5028 hgsc.bcm.edu hg19 3 152554282 152554282 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . P2RY1 NM_002563 exon1 c.C711T p.Y237Y CTGTTACGGATTA . 110.0 48.0 93.0 0.0 . 49 . . Atlas-SNP ARHGEF26 26084 hgsc.bcm.edu hg19 3 153912436 153912436 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGEF26 NM_001251962 exon9 c.A1774G p.I592V CAGACTATCTGTC . 189.0 69.0 181.0 0.0 . 158 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154146778 154146778 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPR149 NM_001038705 exon1 c.A627G p.S209S TGGGACTGAGAGG . 219.0 88.0 262.0 0.0 . 134 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 155861202 155861202 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCNAB1 NM_003471 exon1 c.G235A p.A79T GGCATGGCATACA . 85.0 43.0 126.0 0.0 . 176 . . Atlas-SNP PLD1 5337 hgsc.bcm.edu hg19 3 171453412 171453412 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PLD1 NM_002662 exon4 c.C304T p.L102F TGTAAAGATTAAT . 153.0 77.0 135.0 0.0 . 134 . . Atlas-SNP KCNMB2 10242 hgsc.bcm.edu hg19 3 178525220 178525220 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCNMB2 NM_005832 exon3 c.G23A p.R8Q GTGGCCGGACCTC . 91.0 27.0 106.0 0.0 . 35 . . Atlas-SNP USP13 8975 hgsc.bcm.edu hg19 3 179448452 179448452 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . USP13 NM_003940 exon10 c.G1209A p.P403P GCCTCCGGTGAAA . 146.0 59.0 156.0 0.0 . 117 . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180378451 180378451 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC39 NM_181426 exon4 c.A423C p.Q141H CAATGCTTGCTGG . 93.0 39.0 86.0 0.0 . 242 . . Atlas-SNP B3GNT5 84002 hgsc.bcm.edu hg19 3 182988028 182988028 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . B3GNT5 NM_032047 exon2 c.T442C p.W148R CTGGCTTGGGAAG . 154.0 61.0 157.0 0.0 . 26 . . Atlas-SNP VWA5B2 90113 hgsc.bcm.edu hg19 3 183955189 183955189 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 VWA5B2,caecum,carcinoma,0,1 VWA5B2 NM_138345 exon11 c.G1709A p.R570H GGTCCCGCCCACC . 66.0 23.0 79.0 0.0 . 47 . . Atlas-SNP DGKG 1608 hgsc.bcm.edu hg19 3 185975727 185975727 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DGKG NM_001346 exon17 c.T1426G p.L476V AGTTCAACCTGGG . 98.0 6.0 105.0 0.0 . 98 . . Atlas-SNP IL1RAP 3556 hgsc.bcm.edu hg19 3 190338162 190338162 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IL1RAP NM_001167929 exon5 c.T636C p.C212C CACATGTGTTGTT . 95.0 20.0 135.0 0.0 . 96 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195475922 195475922 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MUC4 NM_018406 exon24 c.G15885A p.T5295T CTTCAGCGTGCTC . 49.0 6.0 57.0 0.0 . 1505 . . Atlas-SNP UVSSA 57654 hgsc.bcm.edu hg19 4 1343357 1343357 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_020894 exon3 c.A144G p.A48A GATAGCACAGCTG . 78.0 32.0 87.0 0.0 . . . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3241599 3241599 + Missense_Mutation SNP G G C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HTT NM_002111 exon67 c.G9242C p.G3081A GGATGGGCAAGCT . 77.0 33.0 79.0 0.0 . 221 . . Atlas-SNP AFAP1 60312 hgsc.bcm.edu hg19 4 7783227 7783227 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AFAP1 NM_001134647 exon13 c.A1658T p.D553V TTTCTGTCAGCAG . 179.0 81.0 202.0 0.0 . 93 . . Atlas-SNP LAP3 51056 hgsc.bcm.edu hg19 4 17590466 17590466 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LAP3 NM_015907 exon7 c.G729T p.Q243H GGAACAGGCAATG . 337.0 137.0 339.0 0.0 . 50 . . Atlas-SNP FAM184B 27146 hgsc.bcm.edu hg19 4 17649411 17649411 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM184B NM_015688 exon12 c.C2195T p.S732L CTGAGCGACTCTG . 23.0 5.0 24.0 0.0 . 38 . . Atlas-SNP GPR125 166647 hgsc.bcm.edu hg19 4 22389385 22389385 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPR125 NM_145290 exon19 c.T3909C p.G1303G ATCGGTACCGAGC . 265.0 113.0 236.0 1.0 . 118 . . Atlas-SNP PPARGC1A 10891 hgsc.bcm.edu hg19 4 23833257 23833257 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPARGC1A NM_013261 exon3 c.A352G p.T118A CAGTGGTCACGTC . 110.0 5.0 129.0 0.0 . 129 . . Atlas-SNP LGI2 55203 hgsc.bcm.edu hg19 4 25005399 25005399 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LGI2 NM_018176 exon8 c.C1312T p.R438C TGAAGCGGGTAAG . 207.0 96.0 163.0 0.0 . 62 . . Atlas-SNP KIAA1239 57495 hgsc.bcm.edu hg19 4 37446811 37446811 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1239 NM_001144990 exon7 c.C3201T p.S1067S ACTGTCCGCCAAC . 148.0 60.0 111.0 0.0 . 79 . . Atlas-SNP RPL9 6133 hgsc.bcm.edu hg19 4 39458043 39458043 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RPL9 NM_000661 exon5 c.G374T p.R125M CGAACCCTGCGGA . 608.0 247.0 690.0 0.0 . 16 . . Atlas-SNP PDS5A 23244 hgsc.bcm.edu hg19 4 39891910 39891910 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PDS5A NM_001100399 exon17 c.G1845T p.L615F TCTTTCCAACAGA . 78.0 27.0 74.0 0.0 . 114 . . Atlas-SNP LIMCH1 22998 hgsc.bcm.edu hg19 4 41621359 41621359 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LIMCH1 NM_014988 exon8 c.C837T p.Y279Y GGCCTACGTCCCC . 111.0 54.0 95.0 0.0 . 233 . . Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57181271 57181271 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1211 NM_020722 exon8 c.C1603T p.R535W ATGCCCCGGCCCT . 305.0 124.0 266.0 1.0 . 178 . . Atlas-SNP REST 5978 hgsc.bcm.edu hg19 4 57777460 57777460 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . REST NM_001193508 exon2 c.A656G p.D219G GCTGTGACCGCTG . 152.0 61.0 199.0 0.0 . 104 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62849207 62849207 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LPHN3 NM_015236 exon16 c.T2918C p.F973S AGGTTTTTGAGAG . 163.0 12.0 155.0 0.0 . 800 . . Atlas-SNP AMTN 401138 hgsc.bcm.edu hg19 4 71394475 71394475 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AMTN NM_212557 exon6 c.G330A p.Q110Q AGCCCAGGTAAAA . 256.0 93.0 211.0 0.0 . 28 . . Atlas-SNP IGJ 3512 hgsc.bcm.edu hg19 4 71532164 71532164 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IGJ NM_144646 exon1 c.T44A p.I15N GCCTTAATAAAAA . 223.0 11.0 209.0 0.0 . 13 . . Atlas-SNP ADAMTS3 9508 hgsc.bcm.edu hg19 4 73149372 73149372 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADAMTS3 NM_014243 exon22 c.G3099A p.L1033L TCGTGCCAACACT . 55.0 23.0 58.0 0.0 . 164 . . Atlas-SNP PF4V1 5197 hgsc.bcm.edu hg19 4 74719172 74719172 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PF4V1 NM_002620 exon1 c.C93T p.F31F CGCCTTCGCCAGA . 227.0 86.0 230.0 0.0 . 8 . . Atlas-SNP PPEF2 5470 hgsc.bcm.edu hg19 4 76811198 76811198 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPEF2 NM_006239 exon5 c.T329C p.V110A TCGGGTACCTCTA . 178.0 31.0 168.0 0.0 . 108 . . Atlas-SNP CCDC158 339965 hgsc.bcm.edu hg19 4 77300543 77300543 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC158 NM_001042784 exon8 c.A929T p.N310I TTTTGGTTTCTTG . 83.0 39.0 79.0 0.0 . 114 . . Atlas-SNP HELQ 113510 hgsc.bcm.edu hg19 4 84358187 84358187 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HELQ NM_133636 exon9 c.C1872T p.G624G GCCATTGCCAATA . 179.0 76.0 137.0 0.0 . 95 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87622823 87622823 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTPN13 NM_006264 exon7 c.G1064A p.G355D TCTTTGGCCCTCA . 194.0 83.0 216.0 0.0 . 203 . . Atlas-SNP HSD17B13 345275 hgsc.bcm.edu hg19 4 88239575 88239575 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HSD17B13 NM_178135 exon2 c.A224G p.E75G GCAGTTTCCTCCA . 118.0 5.0 86.0 0.0 . 27 . . Atlas-SNP SPP1 6696 hgsc.bcm.edu hg19 4 88903791 88903791 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPP1 NM_001251830 exon8 c.C727T p.L243L AGTCAGCTGGATG . 202.0 85.0 171.0 0.0 . 35 . . Atlas-SNP FAM13A 10144 hgsc.bcm.edu hg19 4 89689146 89689146 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM13A NM_014883 exon12 c.T1523C p.M508T TCAGACATCCATT . 227.0 65.0 244.0 0.0 . 181 . . Atlas-SNP CCSER1 401145 hgsc.bcm.edu hg19 4 92519977 92519977 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001145065 exon11 c.C2472T p.T824T GGCCACCGTTGGG . 168.0 54.0 153.0 0.0 . . . . Atlas-SNP NFKB1 4790 hgsc.bcm.edu hg19 4 103498147 103498147 + Silent SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NFKB1 NM_003998 exon7 c.T522G p.P174P GCACCCTGACCTT . 110.0 7.0 113.0 0.0 . 78 . . Atlas-SNP NFKB1 4790 hgsc.bcm.edu hg19 4 103528382 103528382 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NFKB1 NM_003998 exon18 c.A2030G p.D677G GGGCTGACGTCAA . 173.0 63.0 190.0 0.0 . 78 . . Atlas-SNP TBCK 93627 hgsc.bcm.edu hg19 4 107173107 107173107 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TBCK NM_001163436 exon6 c.T513A p.D171E CATGTGATCAGTG . 115.0 36.0 108.0 0.0 . 89 . . Atlas-SNP LRIT3 345193 hgsc.bcm.edu hg19 4 110791477 110791477 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRIT3 NM_198506 exon4 c.G1572A p.G524G TGGTGGGAAGGAC . 179.0 75.0 135.0 0.0 . 107 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126241913 126241913 + Silent SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAT4 NM_024582 exon1 c.A4347C p.A1449A TGATGCAGACATT . 253.0 104.0 278.0 0.0 . 1752 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126412250 126412250 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAT4 NM_024582 exon17 c.C14273T p.A4758V CTCAGGCCATGGC . 101.0 52.0 103.0 0.0 . 1752 . . Atlas-SNP PET112 5188 hgsc.bcm.edu hg19 4 152622627 152622627 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PET112,NS,carcinoma,0,1 PET112 NM_004564 exon9 c.G1051A p.A351T ATGTGGCGTCGTA . 88.0 35.0 106.0 0.0 . 43 . . Atlas-SNP FBXW7 55294 hgsc.bcm.edu hg19 4 153244121 153244121 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FBXW7 NM_033632 exon12 c.A2036G p.N679S TTTGTGTTTGAGG . 198.0 90.0 198.0 0.0 . 2157 . . Atlas-SNP NPY2R 4887 hgsc.bcm.edu hg19 4 156135360 156135360 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NPY2R NM_000910 exon2 c.C269T p.A90V TCATTGCCAATCT . 80.0 6.0 76.0 0.0 . 87 . . Atlas-SNP ETFDH 2110 hgsc.bcm.edu hg19 4 159620153 159620153 + Nonsense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ETFDH NM_004453 exon9 c.T987A p.Y329X AGACTATCAGAAT . 373.0 145.0 403.0 0.0 . 57 . . Atlas-SNP RAPGEF2 9693 hgsc.bcm.edu hg19 4 160264434 160264434 + Silent SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RAPGEF2 NM_014247 exon16 c.A2649T p.G883G TTCAGGAAATGAC . 194.0 73.0 205.0 0.0 . 171 . . Atlas-SNP NPY1R 4886 hgsc.bcm.edu hg19 4 164246566 164246566 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NPY1R NM_000909 exon3 c.A1044T p.E348D TATTGTTTCATAA . 140.0 53.0 140.0 0.0 . 72 . . Atlas-SNP NPY5R 4889 hgsc.bcm.edu hg19 4 164272694 164272694 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NPY5R NM_006174 exon4 c.T1269C p.I423I TCCAATTCTATAT . 121.0 47.0 131.0 0.0 . 101 . . Atlas-SNP TLL1 7092 hgsc.bcm.edu hg19 4 166987010 166987010 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TLL1 NM_012464 exon16 c.T2183C p.F728S ATTTTTTCTCAGG . 134.0 49.0 135.0 0.0 . 194 . . Atlas-SNP CLCN3 1182 hgsc.bcm.edu hg19 4 170625277 170625277 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CLCN3 NM_001829 exon10 c.C1692T p.V564V TGAGGTCGGGGCT . 133.0 50.0 109.0 0.0 . 85 . . Atlas-SNP HAND2 9464 hgsc.bcm.edu hg19 4 174450400 174450400 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HAND2 NM_021973 exon1 c.A41G p.H14R TCGTGGTGCACCA . 50.0 19.0 63.0 0.0 . 25 . . Atlas-SNP NEIL3 55247 hgsc.bcm.edu hg19 4 178283576 178283576 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NEIL3 NM_018248 exon10 c.T1769C p.F590S ATTTTTTCCAGTG . 258.0 113.0 248.0 0.0 . 89 . . Atlas-SNP DCTD 1635 hgsc.bcm.edu hg19 4 183815749 183815749 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DCTD NM_001012732 exon4 c.C287T p.A96V AGCTCCGCATGGC . 95.0 23.0 101.0 0.0 . 30 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7706967 7706967 + Nonsense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADCY2 NM_020546 exon8 c.C1220A p.S407X TGTGGTCACATGA . 141.0 32.0 131.0 0.0 . 337 . . Atlas-SNP FASTKD3 79072 hgsc.bcm.edu hg19 5 7867406 7867406 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FASTKD3 NM_024091 exon2 c.A791G p.Q264R CATGCCTGCAAGA . 64.0 27.0 57.0 0.0 . 88 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13911493 13911493 + Splice_Site SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAH5 NM_001369 exon13 c.1644+2T>G . CAACCTACATGAA . 64.0 26.0 67.0 0.0 . 868 . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16818199 16818199 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYO10 NM_012334 exon3 c.T198C p.D66D CATGTCATCCACG . 67.0 29.0 77.0 0.0 . 198 . . Atlas-SNP CDH10 1008 hgsc.bcm.edu hg19 5 24509863 24509863 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDH10 NM_006727 exon7 c.T1068A p.D356E ACGGGGATCTACA . 246.0 57.0 238.0 0.0 . 391 . . Atlas-SNP PDZD2 23037 hgsc.bcm.edu hg19 5 32088757 32088757 + Nonsense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PDZD2,NS,malignant_melanoma,0,1 PDZD2 NM_178140 exon19 c.G5203T p.E1735X GGCTTGGAACATG . 122.0 48.0 157.0 0.0 . 306 . . Atlas-SNP DNAJC21 134218 hgsc.bcm.edu hg19 5 34935891 34935891 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAJC21 NM_001012339 exon3 c.C268T p.R90C TTGCTACGCTATT . 115.0 46.0 122.0 0.0 . 54 . . Atlas-SNP UTP15 84135 hgsc.bcm.edu hg19 5 72864403 72864403 + Silent SNP C C T rs112684902 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UTP15 NM_032175 exon4 c.C342T p.P114P GGCTCCCCTCAGG . 104.0 43.0 89.0 0.0 . 30 . C|0.500;T|0.500 Atlas-SNP ARHGEF28 64283 hgsc.bcm.edu hg19 5 73128204 73128204 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001080479 exon10 c.A1066G p.T356A CCCTCGACATTGC . 96.0 7.0 108.0 0.0 . . . . Atlas-SNP ARHGEF28 64283 hgsc.bcm.edu hg19 5 73179659 73179659 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001080479 exon24 c.G3005A p.R1002H CTCAGCGTATTAC . 144.0 61.0 175.0 0.0 . . . . Atlas-SNP HMGCR 3156 hgsc.bcm.edu hg19 5 74650434 74650434 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HMGCR NM_001130996 exon12 c.T1475C p.V492A GTGGTGTATCTAT . 124.0 57.0 154.0 0.0 . 53 . . Atlas-SNP AGGF1 55109 hgsc.bcm.edu hg19 5 76342271 76342271 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AGGF1 NM_018046 exon6 c.A970G p.I324V ATAGGCATTCATC . 277.0 14.0 291.0 0.0 . 71 . . Atlas-SNP AP3B1 8546 hgsc.bcm.edu hg19 5 77423904 77423904 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AP3B1 NM_003664 exon17 c.C1918T p.P640S CCTCTGGCCAATT . 113.0 39.0 106.0 0.0 . 94 . . Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79033682 79033682 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CMYA5 NM_153610 exon2 c.T9094A p.S3032T GAGATATCCACAG . 440.0 179.0 473.0 0.0 . 643 . . Atlas-SNP ZFYVE16 9765 hgsc.bcm.edu hg19 5 79734315 79734315 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZFYVE16 NM_001105251 exon4 c.C1811T p.T604I AAAATACAATAGA . 456.0 202.0 418.0 0.0 . 100 . . Atlas-SNP NR2F1 7025 hgsc.bcm.edu hg19 5 92923770 92923770 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NR2F1 NM_005654 exon2 c.G611A p.G204D GCTACGGCAGCCA . 193.0 80.0 179.0 0.0 . 56 . . Atlas-SNP TRIM36 55521 hgsc.bcm.edu hg19 5 114462349 114462349 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIM36 NM_018700 exon10 c.T2038C p.Y680H TATCATAGAAATC . 136.0 62.0 141.0 0.0 . 126 . . Atlas-SNP TMED7-TICAM2 100302736 hgsc.bcm.edu hg19 5 114916490 114916490 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001164468 exon4 c.C971T p.T324M AGGGACGTATAGA . 123.0 42.0 125.0 0.0 . . . . Atlas-SNP SRFBP1 153443 hgsc.bcm.edu hg19 5 121356208 121356208 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SRFBP1 NM_152546 exon6 c.T778A p.Y260N AAGGAATATTTTG . 300.0 118.0 284.0 0.0 . 47 . . Atlas-SNP FNIP1 96459 hgsc.bcm.edu hg19 5 131007515 131007515 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FNIP1 NM_133372 exon14 c.T2622C p.C874C TTTTGTACACAAT . 103.0 6.0 114.0 0.0 . 104 . . Atlas-SNP KIF3A 11127 hgsc.bcm.edu hg19 5 132069913 132069913 + Silent SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIF3A NM_007054 exon2 c.A264T p.V88V TTCAAGTACAGAA . 177.0 71.0 183.0 0.0 . 117 . . Atlas-SNP SOWAHA 134548 hgsc.bcm.edu hg19 5 132150795 132150795 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_175873 exon1 c.A1482G p.R494R GGCCCGAGGCTTG . 103.0 43.0 82.0 0.0 . . . . Atlas-SNP SHROOM1 134549 hgsc.bcm.edu hg19 5 132159057 132159057 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SHROOM1 NM_133456 exon6 c.G2111A p.R704Q ATGAACCGGCTGA . 65.0 24.0 72.0 0.0 . 35 . . Atlas-SNP PKD2L2 27039 hgsc.bcm.edu hg19 5 137228299 137228299 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PKD2L2 NM_001258448 exon3 c.G264T p.W88C TTTTTGGAAGGTA . 125.0 52.0 152.0 0.0 . 68 . . Atlas-SNP APBB3 10307 hgsc.bcm.edu hg19 5 139939980 139939980 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . APBB3 NM_006051 exon11 c.G1163T p.G388V TGACGGCCCAGGT . 223.0 52.0 213.0 0.0 . 34 . . Atlas-SNP PCDHA1 56147 hgsc.bcm.edu hg19 5 140167660 140167660 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDHA1 NM_031410 exon1 c.C1785T p.R595R GGTGCGCGCAGTG . 153.0 60.0 126.0 0.0 . 387 . . Atlas-SNP PCDHA10 56139 hgsc.bcm.edu hg19 5 140237443 140237443 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDHA10 NM_031859 exon1 c.G1810T p.A604S TACAACGCGTGGC . 141.0 65.0 165.0 0.0 . 358 . . Atlas-SNP PCDHAC2 56134 hgsc.bcm.edu hg19 5 140347456 140347456 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDHAC2 NM_031883 exon1 c.G1105A p.D369N CTCACGGACCTGT . 61.0 17.0 68.0 0.0 . 142 . . Atlas-SNP PCDHB14 56122 hgsc.bcm.edu hg19 5 140605037 140605037 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDHB14 NM_018934 exon1 c.G1960A p.A654T CGCTCGGCCACCG . 46.0 16.0 59.0 0.0 . 132 . . Atlas-SNP PCDHGA7 56108 hgsc.bcm.edu hg19 5 140764204 140764204 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PCDHGA7,NS,carcinoma,0,1 PCDHGA7 NM_032087 exon1 c.C1738T p.R580C GCACCCCGCTCCG . 129.0 50.0 103.0 0.0 . 130 . . Atlas-SNP DIAPH1 1729 hgsc.bcm.edu hg19 5 140955840 140955840 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DIAPH1 NM_005219 exon14 c.A1418C p.K473T TCCACCTTTGTCT . 190.0 76.0 228.0 0.0 . 64 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141336556 141336556 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDH12 NM_016580 exon1 c.G861T p.M287I TGGAGGCATGTGC . 92.0 8.0 124.0 0.0 . 133 . . Atlas-SNP RBM27 54439 hgsc.bcm.edu hg19 5 145634549 145634549 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBM27 NM_018989 exon10 c.T1488C p.I496I TAGTATTACTAGT . 105.0 30.0 97.0 0.0 . 119 . . Atlas-SNP C5orf46 389336 hgsc.bcm.edu hg19 5 147281302 147281302 + Silent SNP G G A rs368375161 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C5orf46 NM_206966 exon2 c.C105T p.D35D CGAGTCGTCTGGC . 195.0 73.0 178.0 0.0 . 8 . . Atlas-SNP PDE6A 5145 hgsc.bcm.edu hg19 5 149324081 149324081 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PDE6A NM_000440 exon1 c.G156A p.P52P GCTGCTCGGGGAG . 116.0 43.0 128.0 0.0 . 98 . . Atlas-SNP HMGXB3 22993 hgsc.bcm.edu hg19 5 149421470 149421470 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HMGXB3 NM_014983 exon15 c.G2668A p.A890T GGTGTGGCCCCCA . 88.0 24.0 106.0 0.0 . 31 . . Atlas-SNP NDST1 3340 hgsc.bcm.edu hg19 5 149901211 149901211 + Missense_Mutation SNP G G A rs141135213 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NDST1 NM_001543 exon2 c.G395A p.R132H GTGGCCGCTTCGC . 126.0 46.0 160.0 0.0 . 79 . G|1.000;A|0.000 Atlas-SNP SLC36A3 285641 hgsc.bcm.edu hg19 5 150660598 150660598 + Missense_Mutation SNP C C T rs201585244 by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC36A3 NM_001145017 exon10 c.G1244A p.R415H GCTGAGCGGACAG . 122.0 39.0 130.0 0.0 . 54 . C|1.000;A|0.000 Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153030021 153030021 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GRIA1 NM_001258021 exon4 c.C622T p.R208W AAGGAGCGGCTGG . 132.0 48.0 151.0 0.0 . 321 . . Atlas-SNP TIMD4 91937 hgsc.bcm.edu hg19 5 156353300 156353300 + Nonsense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TIMD4 NM_138379 exon6 c.C868T p.Q290X TGTTCTGCTCAGG . 63.0 19.0 70.0 0.0 . 94 . . Atlas-SNP CYFIP2 26999 hgsc.bcm.edu hg19 5 156816337 156816337 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CYFIP2 NM_001037332 exon29 c.C3348T p.G1116G CAATGGCGTCATG . 79.0 18.0 71.0 0.0 . 354 . . Atlas-SNP NUDCD2 134492 hgsc.bcm.edu hg19 5 162887001 162887001 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NUDCD2 NM_145266 exon1 c.G56A p.G19D CACTGGCCCCACG . 408.0 163.0 413.0 0.0 . 12 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169116263 169116263 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DOCK2 NM_004946 exon9 c.T769C p.Y257H GAGAACTACCTAG . 90.0 35.0 74.0 0.0 . 389 . . Atlas-SNP GPRIN1 114787 hgsc.bcm.edu hg19 5 176025680 176025680 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 GPRIN1,colon,carcinoma,0,1 GPRIN1 NM_052899 exon2 c.C1156T p.R386C CAGGACGCCCCTC . 112.0 50.0 132.0 1.0 . 77 . . Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176520464 176520464 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FGFR4 NM_002011 exon10 c.C1309T p.R437C GGCGTGCGTCTCT . 78.0 28.0 94.0 0.0 . 174 . . Atlas-SNP PFN3 345456 hgsc.bcm.edu hg19 5 176827232 176827232 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PFN3 NM_001029886 exon1 c.G346A p.V116I CATGTACGCCGCG . 195.0 75.0 249.0 0.0 . 4 . . Atlas-SNP ZNF354B 117608 hgsc.bcm.edu hg19 5 178310742 178310742 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF354B NM_058230 exon5 c.T1289A p.I430K ACCGAATAATTCA . 214.0 79.0 235.0 0.0 . 67 . . Atlas-SNP MAML1 9794 hgsc.bcm.edu hg19 5 179201140 179201140 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAML1 NM_014757 exon5 c.G2313A p.P771P GCCCCCGCCACAG . 52.0 18.0 70.0 0.0 . 118 . . Atlas-SNP BTNL9 153579 hgsc.bcm.edu hg19 5 180472566 180472566 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BTNL9 NM_152547 exon2 c.T77C p.L26P TGCACCTCCTCCT . 45.0 15.0 49.0 0.0 . 58 . . Atlas-SNP RREB1 6239 hgsc.bcm.edu hg19 6 7231535 7231535 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RREB1 NM_001003700 exon10 c.T3203C p.I1068T CCTCCATTGCCCA . 73.0 54.0 96.0 0.0 . 242 . . Atlas-SNP MBOAT1 154141 hgsc.bcm.edu hg19 6 20152967 20152967 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MBOAT1 NM_001080480 exon2 c.T133C p.F45L CAGCAAACAGAGC . 198.0 25.0 191.0 0.0 . 48 . . Atlas-SNP HDGFL1 154150 hgsc.bcm.edu hg19 6 22570437 22570437 + Silent SNP C C T rs371376684 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HDGFL1 NM_138574 exon1 c.C633T p.G211G GCCGGGCCTGGTC . 73.0 13.0 54.0 0.0 . 33 . . Atlas-SNP LRRC16A 55604 hgsc.bcm.edu hg19 6 25538179 25538179 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRC16A NM_001173977 exon25 c.C2164T p.R722W GCAGAGCGGCTCA . 57.0 11.0 48.0 0.0 . 168 . . Atlas-SNP HIST1H1C 3006 hgsc.bcm.edu hg19 6 26056197 26056197 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HIST1H1C NM_005319 exon1 c.A460G p.T154A TCGGTGTTTTCTT . 146.0 40.0 118.0 0.0 . 80 . . Atlas-SNP ABT1 29777 hgsc.bcm.edu hg19 6 26598247 26598247 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABT1 NM_013375 exon2 c.G347A p.R116H ACAAGCGCATAGC . 394.0 114.0 345.0 0.0 . 39 . . Atlas-SNP HIST1H4I 8294 hgsc.bcm.edu hg19 6 27107217 27107217 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HIST1H4I NM_003495 exon1 c.G130A p.V44M GGCGGCGTGAAGC . 254.0 41.0 202.0 0.0 . 26 . . Atlas-SNP OR12D2 26529 hgsc.bcm.edu hg19 6 29365183 29365183 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR12D2 NM_013936 exon1 c.C707T p.A236V GTAAAGCACTGTC . 140.0 48.0 116.0 0.0 . 42 . . Atlas-SNP HLA-G 3135 hgsc.bcm.edu hg19 6 29797328 29797328 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HLA-G NM_002127 exon5 c.C753T p.D251D CCAGGACGTGGAG . 197.0 55.0 129.0 0.0 . 90 . . Atlas-SNP ZNRD1 30834 hgsc.bcm.edu hg19 6 30029708 30029708 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_170783 exon2 c.G160A p.V54I GGGAAGGTTGTGA . 186.0 65.0 149.0 0.0 . . . . Atlas-SNP RNF39 80352 hgsc.bcm.edu hg19 6 30039027 30039027 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RNF39 NM_025236 exon4 c.G1124A p.R375H GCCACGCGGCCCC . 224.0 9.0 148.0 0.0 . 27 . . Atlas-SNP DDR1 780 hgsc.bcm.edu hg19 6 30864468 30864468 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DDR1 NM_013994 exon12 c.C1695T p.S565S GAACAGCGTCCCC . 309.0 60.0 250.0 0.0 . 213 . . Atlas-SNP GTF2H4 2968 hgsc.bcm.edu hg19 6 30881751 30881751 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GTF2H4 NM_001517 exon14 c.T1380G p.H460Q GAAACATAGCTCC . 283.0 86.0 191.0 0.0 . 38 . . Atlas-SNP CDSN 1041 hgsc.bcm.edu hg19 6 31084588 31084588 + Silent SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDSN NM_001264 exon2 c.T804G p.V268V ACCTTGAACCACT . 107.0 24.0 61.0 0.0 . 48 . . Atlas-SNP DDX39B 7919 hgsc.bcm.edu hg19 6 31507027 31507027 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DDX39B,face,carcinoma,0,1 DDX39B NM_004640 exon3 c.C236T p.A79V AGAATGGCCTGAG . 143.0 48.0 92.0 0.0 . 38 . . Atlas-SNP AGPAT1 10554 hgsc.bcm.edu hg19 6 32138331 32138331 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AGPAT1 NM_006411 exon4 c.C381T p.R127R TAGCTCGCGCTTG . 106.0 28.0 84.0 0.0 . 22 . . Atlas-SNP AGER 177 hgsc.bcm.edu hg19 6 32149317 32149317 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AGER NM_001206936 exon9 c.T1005C p.G335G TTGTTGACCATCC . 154.0 43.0 115.0 0.0 . 15 . . Atlas-SNP ITPR3 3710 hgsc.bcm.edu hg19 6 33608281 33608281 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITPR3 NM_002224 exon2 c.T110C p.V37A GCTGTGTGGTGGA . 137.0 43.0 114.0 0.0 . 409 . . Atlas-SNP IP6K3 117283 hgsc.bcm.edu hg19 6 33693356 33693356 + Silent SNP C C T rs200747722 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IP6K3 NM_001142883 exon6 c.G627A p.T209T GGGATGCGTGTAC . 119.0 36.0 118.0 0.0 . 52 . C|0.999;T|0.001 Atlas-SNP C6orf89 221477 hgsc.bcm.edu hg19 6 36867219 36867219 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C6orf89 NM_152734 exon2 c.A20T p.D7V TGGAAGACATGGA . 54.0 23.0 113.0 0.0 . 39 . . Atlas-SNP TRERF1 55809 hgsc.bcm.edu hg19 6 42200601 42200601 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRERF1 NM_033502 exon17 c.C3096T p.G1032G GGCATGGCCATTC . 127.0 19.0 55.0 0.0 . 124 . . Atlas-SNP GLTSCR1L 23506 hgsc.bcm.edu hg19 6 42796557 42796557 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_015349 exon5 c.G486A p.T162T TCAGACGCTGCAG . 313.0 76.0 109.0 0.0 . . . . Atlas-SNP PPP2R5D 5528 hgsc.bcm.edu hg19 6 42975948 42975948 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPP2R5D NM_006245 exon8 c.C867T p.Y289Y CATCTACGAGACG . 281.0 36.0 133.0 0.0 . 47 . . Atlas-SNP MRPL2 51069 hgsc.bcm.edu hg19 6 43023917 43023917 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MRPL2 NM_015950 exon4 c.T422C p.L141P GCAACCAGAGCTA . 172.0 67.0 72.0 0.0 . 30 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43190596 43190596 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CUL9 NM_015089 exon38 c.A7112G p.N2371S CAGAGAACCTGGA . 207.0 49.0 94.0 0.0 . 248 . . Atlas-SNP SLC22A7 10864 hgsc.bcm.edu hg19 6 43267678 43267678 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC22A7 NM_153320 exon4 c.T701C p.V234A CTGGAGTCCTGAG . 325.0 31.0 145.0 0.0 . 69 . . Atlas-SNP ABCC10 89845 hgsc.bcm.edu hg19 6 43402386 43402386 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABCC10 NM_001198934 exon4 c.C1408T p.R470W GGCATTCGGGTCA . 193.0 21.0 53.0 0.0 . 118 . . Atlas-SNP ABCC10 89845 hgsc.bcm.edu hg19 6 43412531 43412531 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ABCC10,bladder,carcinoma,0,1 ABCC10 NM_001198934 exon13 c.C2695T p.R899W GCCACGCGGAACG . 139.0 24.0 55.0 1.0 . 118 . . Atlas-SNP XPO5 57510 hgsc.bcm.edu hg19 6 43526266 43526266 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . XPO5 NM_020750 exon12 c.C1284T p.S428S CTCATCGCTATCA . 459.0 49.0 168.0 0.0 . 79 . . Atlas-SNP RUNX2 860 hgsc.bcm.edu hg19 6 45390466 45390466 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RUNX2 NM_001024630 exon3 c.A195G p.Q65Q GCAGCAACAGCAG . 109.0 5.0 57.0 0.0 . 128 . . Atlas-SNP TDRD6 221400 hgsc.bcm.edu hg19 6 46656045 46656045 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TDRD6 NM_001168359 exon1 c.G180T p.W60C CCAGTGGGCGCTG . 103.0 11.0 63.0 0.0 . 205 . . Atlas-SNP GPR116 221395 hgsc.bcm.edu hg19 6 46874483 46874483 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 GPR116,colon,carcinoma,0,1 GPR116 NM_015234 exon2 c.G17C p.R6T GTGGTTCTCCTTG . 222.0 74.0 154.0 0.0 . 133 . . Atlas-SNP GPR115 221393 hgsc.bcm.edu hg19 6 47682484 47682484 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPR115 NM_153838 exon6 c.A1503G p.G501G TTATGGAATATTG . 155.0 54.0 75.0 0.0 . 140 . . Atlas-SNP COL19A1 1310 hgsc.bcm.edu hg19 6 70866035 70866035 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL19A1 NM_001858 exon32 c.G2096A p.C699Y GCAACTGCCAAGC . 72.0 6.0 152.0 0.0 . 232 . . Atlas-SNP B3GAT2 135152 hgsc.bcm.edu hg19 6 71603972 71603972 + Nonsense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 B3GAT2,NS,carcinoma,0,1 B3GAT2 NM_080742 exon2 c.C595T p.R199X TGGTTCGCATCTA . 117.0 99.0 186.0 0.0 . 33 . . Atlas-SNP SYNCRIP 10492 hgsc.bcm.edu hg19 6 86333797 86333797 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SYNCRIP NM_006372 exon7 c.A700G p.I234V CACCAATATGTTT . 55.0 5.0 79.0 0.0 . 80 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138576784 138576784 + Missense_Mutation SNP G G A rs370057378 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 KIAA1244_ENST00000251691,NS,carcinoma,0,2 KIAA1244 NM_020340 exon10 c.G982A p.E328K GCAGCCGAGCTGG . 52.0 26.0 103.0 0.0 . 236 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138584499 138584499 + Missense_Mutation SNP G G A rs376236619 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1244 NM_020340 exon12 c.G1879A p.V627M TCCGACGTGTCAG . 86.0 33.0 124.0 0.0 . 236 . . Atlas-SNP ESR1 2099 hgsc.bcm.edu hg19 6 152332874 152332874 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ESR1 NM_000125 exon5 c.C1180T p.R394C GTCTGGCGCTCCA . 69.0 17.0 117.0 0.0 . 94 . . Atlas-SNP TFB1M 51106 hgsc.bcm.edu hg19 6 155578991 155578991 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TFB1M NM_016020 exon7 c.C1020T p.D340D CTCTGCGTCATCC . 54.0 27.0 73.0 0.0 . 30 . . Atlas-SNP TTLL2 83887 hgsc.bcm.edu hg19 6 167754936 167754936 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TTLL2 NM_031949 exon3 c.G1548A p.T516T GCACACGCCTCAC . 61.0 40.0 135.0 0.0 . 82 . . Atlas-SNP PRKAR1B 5575 hgsc.bcm.edu hg19 7 618965 618965 + Silent SNP G G T rs199622718 bycluster;by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PRKAR1B NM_001164760 exon9 c.C819A p.P273P CTGGACGGGCTCC . 140.0 42.0 103.0 0.0 . 32 . G|1.000;A|0.000 Atlas-SNP INTS1 26173 hgsc.bcm.edu hg19 7 1518116 1518116 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . INTS1 NM_001080453 exon33 c.G4516A p.E1506K GGGCCTCGGCCAG . 273.0 145.0 253.0 0.0 . 145 . . Atlas-SNP AP5Z1 9907 hgsc.bcm.edu hg19 7 4825084 4825084 + Splice_Site SNP G G C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_014855 exon8 c.969+1G>C . AAAGCTGTAAGTG . 119.0 31.0 101.0 0.0 . . . . Atlas-SNP AIMP2 7965 hgsc.bcm.edu hg19 7 6054890 6054890 + Silent SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AIMP2 NM_006303 exon2 c.A249C p.P83P AACACCAGATGCA . 219.0 68.0 183.0 0.0 . 32 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12381716 12381716 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VWDE NM_001135924 exon23 c.A4239G p.K1413K GCCAGGTTTGCAC . 93.0 47.0 79.0 0.0 . 123 . . Atlas-SNP AVL9 23080 hgsc.bcm.edu hg19 7 32612909 32612909 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AVL9 NM_015060 exon12 c.C1449T p.H483H GAGGCACGTGACT . 209.0 119.0 177.0 0.0 . 66 . . Atlas-SNP SEPT7 989 hgsc.bcm.edu hg19 7 35913370 35913370 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SEPT7 NM_001011553 exon5 c.C494A p.A165D TCATTGCTCCTTC . 212.0 76.0 136.0 0.0 . 24 . . Atlas-SNP STK17A 9263 hgsc.bcm.edu hg19 7 43664380 43664380 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STK17A NM_004760 exon7 c.C1184T p.S395F CCATTTCCAAACG . 118.0 40.0 163.0 0.0 . 31 . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45743231 45743231 + Silent SNP C C T rs138836914 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADCY1 NM_021116 exon16 c.C2604T p.G868G GGTGGGCGTCATG . 148.0 47.0 165.0 0.0 . 187 . C|1.000;T|0.000 Atlas-SNP IKZF1 10320 hgsc.bcm.edu hg19 7 50467747 50467747 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IKZF1 NM_006060 exon8 c.C982T p.R328C TCCCTGCGCCCGC . 140.0 55.0 124.0 0.0 . 613 . . Atlas-SNP POM121L12 285877 hgsc.bcm.edu hg19 7 53103947 53103947 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 POM121L12,NS,carcinoma,-2,1 POM121L12 NM_182595 exon1 c.C583T p.P195S GACGGGCCGTTGT . 63.0 23.0 72.0 0.0 . 146 . . Atlas-SNP GUSB 2990 hgsc.bcm.edu hg19 7 65440028 65440028 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GUSB NM_000181 exon6 c.C943A p.P315T ACACAGGCCCCAG . 82.0 8.0 117.0 0.0 . 52 . . Atlas-SNP AUTS2 26053 hgsc.bcm.edu hg19 7 70254962 70254962 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AUTS2 NM_015570 exon19 c.C2760T p.D920D GAAGGACGGGCAC . 89.0 36.0 108.0 0.0 . 173 . . Atlas-SNP DTX2 113878 hgsc.bcm.edu hg19 7 76131756 76131756 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DTX2 NM_001102594 exon8 c.T1372C p.Y458H GCCATGTACTGCA . 110.0 42.0 128.0 0.0 . 64 . . Atlas-SNP CACNA2D1 781 hgsc.bcm.edu hg19 7 81579773 81579773 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CACNA2D1 NM_000722 exon39 c.T3211C p.Y1071H TGATATACCACAG . 111.0 38.0 114.0 0.0 . 191 . . Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92970851 92970851 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC132 NM_017667 exon23 c.A2171G p.Y724C CGCTGTATGGGTT . 143.0 7.0 132.0 0.0 . 136 . . Atlas-SNP BAIAP2L1 55971 hgsc.bcm.edu hg19 7 97946608 97946608 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BAIAP2L1 NM_018842 exon6 c.C409A p.Q137K CAGCTTGGGATTT . 84.0 26.0 137.0 0.0 . 61 . . Atlas-SNP TAF6 6878 hgsc.bcm.edu hg19 7 99706132 99706132 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TAF6 NM_001190415 exon13 c.G1427A p.R476H GGTGGGCGCAGCT . 100.0 43.0 84.0 0.0 . 55 . . Atlas-SNP NYAP1 222950 hgsc.bcm.edu hg19 7 100084550 100084550 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_173564 exon3 c.G175T p.G59C AGGATGGGTTTCA . 162.0 11.0 160.0 0.0 . . . . Atlas-SNP AGFG2 3268 hgsc.bcm.edu hg19 7 100159952 100159952 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 AGFG2,NS,carcinoma,0,2 AGFG2 NM_006076 exon7 c.C948T p.D316D CGCAGACGTGGGC . 132.0 56.0 156.0 0.0 . 44 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100678585 100678585 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MUC17 NM_001040105 exon3 c.C3888T p.S1296S GGCTAGCACCCTT . 49.0 24.0 83.0 0.0 . 804 . . Atlas-SNP SLC26A5 375611 hgsc.bcm.edu hg19 7 103014890 103014890 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SLC26A5,NS,malignant_melanoma,0,1 SLC26A5 NM_198999 exon20 c.G2191A p.E731K AGTCCTCCTGGGA . 89.0 39.0 116.0 0.0 . 231 . . Atlas-SNP DOCK4 9732 hgsc.bcm.edu hg19 7 111584884 111584884 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DOCK4 NM_014705 exon10 c.G826A p.V276M TGTGCACGGTGAT . 118.0 49.0 89.0 0.0 . 365 . . Atlas-SNP AASS 10157 hgsc.bcm.edu hg19 7 121733126 121733126 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AASS NM_005763 exon16 c.C1742T p.P581L AGTGCTGGTGTGA . 162.0 58.0 191.0 0.0 . 123 . . Atlas-SNP STRA8 346673 hgsc.bcm.edu hg19 7 134931258 134931258 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STRA8 NM_182489 exon6 c.C536T p.A179V TCTCCGCGGCCAT . 114.0 39.0 114.0 0.0 . 39 . . Atlas-SNP FAM131B 9715 hgsc.bcm.edu hg19 7 143055964 143055964 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM131B NM_001031690 exon5 c.A422G p.Y141C TCGGAGTAGGCAT . 68.0 12.0 90.0 0.0 . 104 . . Atlas-SNP TAS2R41 259287 hgsc.bcm.edu hg19 7 143175777 143175777 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TAS2R41 NM_176883 exon1 c.C812T p.A271V AAATTGCAGTCTA . 111.0 42.0 127.0 0.0 . 43 . . Atlas-SNP KCNH2 3757 hgsc.bcm.edu hg19 7 150648807 150648807 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCNH2 NM_000238 exon7 c.G1674A p.A558A GATGAGCGCAAAG . 87.0 33.0 97.0 0.0 . 157 . . Atlas-SNP SLC4A2 6522 hgsc.bcm.edu hg19 7 150772569 150772569 + Missense_Mutation SNP C C T rs370805035 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SLC4A2,NS,carcinoma,0,1 SLC4A2 NM_003040 exon20 c.C3275T p.T1092M GGGTGACGGGGCT . 10.0 6.0 20.0 0.0 . 98 . . Atlas-SNP FASTK 10922 hgsc.bcm.edu hg19 7 150776623 150776623 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FASTK NM_006712 exon2 c.A469G p.T157A GGATGGTGTGAAT . 246.0 98.0 259.0 1.0 . 29 . . Atlas-SNP SMARCD3 6604 hgsc.bcm.edu hg19 7 150938679 150938679 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SMARCD3 NM_001003801 exon8 c.C838T p.R280C CTGAGCGGCTCTG . 69.0 33.0 68.0 0.0 . 92 . . Atlas-SNP RHEB 6009 hgsc.bcm.edu hg19 7 151188049 151188049 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RHEB NM_005614 exon2 c.A104G p.Y35C GGATCGTAGGAGT . 99.0 5.0 106.0 0.0 . 30 . . Atlas-SNP LMBR1 64327 hgsc.bcm.edu hg19 7 156521354 156521354 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LMBR1 NM_022458 exon11 c.T899G p.L300R AGAAGGAGAACCA . 280.0 93.0 314.0 0.0 . 35 . . Atlas-SNP FBXO25 26260 hgsc.bcm.edu hg19 8 363195 363195 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FBXO25 NM_183420 exon2 c.G116A p.C39Y ACCGTTGTAACAT . 175.0 52.0 179.0 0.0 . 25 . . Atlas-SNP CLN8 2055 hgsc.bcm.edu hg19 8 1719730 1719730 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CLN8 NM_018941 exon2 c.G510A p.T170T GAGCACGCCCTTT . 47.0 6.0 61.0 0.0 . 64 . . Atlas-SNP ARHGEF10 9639 hgsc.bcm.edu hg19 8 1842674 1842674 + Missense_Mutation SNP C C T rs144726787 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGEF10 NM_014629 exon13 c.C1376T p.A459V AGATCGCGCTGGC . 119.0 29.0 116.0 0.0 . 255 . C|1.000;T|0.000 Atlas-SNP AGPAT5 55326 hgsc.bcm.edu hg19 8 6590108 6590108 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AGPAT5 NM_018361 exon4 c.T432C p.S144S GCGCAGTGCCAAA . 569.0 37.0 539.0 0.0 . 31 . . Atlas-SNP KIAA1456 57604 hgsc.bcm.edu hg19 8 12879351 12879351 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1456 NM_020844 exon5 c.A1163G p.N388S ATTTCAACCCAGA . 156.0 48.0 154.0 0.0 . 20 . . Atlas-SNP PPP2R2A 5520 hgsc.bcm.edu hg19 8 26223877 26223877 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPP2R2A NM_001177591 exon9 c.A1049G p.D350G AAAATGACTGCAT . 106.0 34.0 112.0 0.0 . 44 . . Atlas-SNP SCARA3 51435 hgsc.bcm.edu hg19 8 27516318 27516318 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SCARA3 NM_182826 exon5 c.C631A p.Q211K CTCACCCAGGAGT . 152.0 7.0 123.0 0.0 . 93 . . Atlas-SNP ESCO2 157570 hgsc.bcm.edu hg19 8 27646450 27646450 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ESCO2 NM_001017420 exon7 c.G1218A p.Q406Q AATGCAGCATGTA . 108.0 40.0 82.0 0.0 . 50 . . Atlas-SNP PBK 55872 hgsc.bcm.edu hg19 8 27667883 27667883 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PBK NM_018492 exon8 c.A908T p.E303V GGGTCTTCATTAG . 103.0 51.0 114.0 0.0 . 29 . . Atlas-SNP EXTL3 2137 hgsc.bcm.edu hg19 8 28608212 28608212 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EXTL3 NM_001440 exon7 c.T2589C p.P863P ATGCCCTCAGGCC . 48.0 21.0 66.0 0.0 . 83 . . Atlas-SNP TMEM66 51669 hgsc.bcm.edu hg19 8 29924389 29924389 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM66 NM_016127 exon4 c.C746T p.A249V GTAAAAGCACTGC . 183.0 19.0 165.0 0.0 . 23 . . Atlas-SNP UNC5D 137970 hgsc.bcm.edu hg19 8 35541099 35541099 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UNC5D NM_080872 exon5 c.C605A p.S202Y TTGACTCTGAACA . 121.0 53.0 124.0 0.0 . 393 . . Atlas-SNP WHSC1L1 54904 hgsc.bcm.edu hg19 8 38184373 38184373 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WHSC1L1 NM_017778 exon7 c.G1583A p.G528E CCAATTCCCTTTA . 87.0 34.0 73.0 0.0 . 137 . . Atlas-SNP RB1CC1 9821 hgsc.bcm.edu hg19 8 53555118 53555118 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RB1CC1 NM_001083617 exon18 c.G4130A p.R1377H AGCAAACGAGCTC . 103.0 30.0 110.0 0.0 . 163 . . Atlas-SNP NSMAF 8439 hgsc.bcm.edu hg19 8 59511898 59511898 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NSMAF NM_001144772 exon19 c.G1571A p.S524N TCTTTGCTCTTCT . 89.0 37.0 93.0 0.0 . 156 . . Atlas-SNP PDE7A 5150 hgsc.bcm.edu hg19 8 66651737 66651737 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PDE7A NM_001242318 exon6 c.G595T p.V199F ACTTACCTAAAAA . 239.0 92.0 268.0 0.0 . 78 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69020402 69020402 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PREX2 NM_024870 exon24 c.T2774A p.I925N CTAAAATCTCCCC . 114.0 40.0 87.0 0.0 . 614 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77776151 77776151 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZFHX4 NM_024721 exon11 c.T10201C p.Y3401H GTCAAGTATGAGT . 71.0 31.0 70.0 0.0 . 878 . . Atlas-SNP PSKH2 85481 hgsc.bcm.edu hg19 8 87076416 87076416 + Silent SNP G G A rs376242267 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PSKH2,rectum,carcinoma,0,1 PSKH2 NM_033126 exon2 c.C630T p.S210S TTTCCCGGAGTAT . 130.0 52.0 127.0 0.0 . 79 . . Atlas-SNP ESRP1 54845 hgsc.bcm.edu hg19 8 95680213 95680213 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ESRP1 NM_001122827 exon10 c.A968G p.E323G CCAAGGAAAATCA . 121.0 45.0 131.0 0.0 . 148 . . Atlas-SNP CTHRC1 115908 hgsc.bcm.edu hg19 8 104394725 104394725 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CTHRC1 NM_138455 exon4 c.A629T p.D210V TAGTGGATGTTGC . 121.0 48.0 152.0 0.0 . 29 . . Atlas-SNP DCAF13 25879 hgsc.bcm.edu hg19 8 104447934 104447934 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DCAF13 NM_015420 exon8 c.A1322G p.D441G ATGTGGATTACTC . 63.0 24.0 46.0 0.0 . 66 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124340665 124340665 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATAD2 NM_014109 exon25 c.T3633A p.D1211E ATTATGATCTACA . 141.0 58.0 124.0 0.0 . 160 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124383532 124383532 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATAD2 NM_014109 exon5 c.C583T p.R195C GTCTACGCATCTT . 198.0 71.0 212.0 0.0 . 160 . . Atlas-SNP TMEM71 137835 hgsc.bcm.edu hg19 8 133764034 133764034 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM71 NM_144649 exon4 c.T311G p.V104G TACCTAACTAAGT . 119.0 40.0 126.0 0.0 . 55 . . Atlas-SNP PHF20L1 51105 hgsc.bcm.edu hg19 8 133848922 133848922 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 Q86U89_HUMAN,NS,carcinoma,0,4 PHF20L1 NM_016018 exon16 c.C2047T p.R683X ATTGTGCGATGTA . 158.0 55.0 159.0 0.0 . 129 . . Atlas-SNP LYNX1 66004 hgsc.bcm.edu hg19 8 143857040 143857040 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LYNX1 NM_177477 exon3 c.T125C p.M42T GCAACCATAGCCG . 99.0 40.0 116.0 0.0 . 40 . . Atlas-SNP FAM83H 286077 hgsc.bcm.edu hg19 8 144809309 144809309 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM83H NM_198488 exon5 c.G2322A p.A774A TGGGGCCGCCACC . 952.0 247.0 914.0 1.0 . 68 . . Atlas-SNP FAM83H 286077 hgsc.bcm.edu hg19 8 144812634 144812634 + Missense_Mutation SNP G G A rs371078447 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM83H NM_198488 exon2 c.C119T p.S40L GCCTCCGAGCCAC . 1310.0 554.0 1440.0 2.0 . 68 . . Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144942558 144942558 + Nonsense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPPK1 NM_031308 exon1 c.A4864T p.K1622X TCAGCTTCCGGTT . 90.0 15.0 73.0 0.0 . 199 . . Atlas-SNP SPATC1 375686 hgsc.bcm.edu hg19 8 145095689 145095689 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPATC1 NM_001134374 exon3 c.C987T p.S329S CACCTCCCCCACG . 125.0 40.0 134.0 0.0 . 77 . . Atlas-SNP VPS28 51160 hgsc.bcm.edu hg19 8 145649444 145649444 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VPS28 NM_016208 exon9 c.C528T p.G176G CTGGCGGCCCTCA . 139.0 62.0 145.0 0.0 . 23 . . Atlas-SNP FOXH1 8928 hgsc.bcm.edu hg19 8 145700399 145700399 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FOXH1 NM_003923 exon3 c.T320C p.F107S GCCCAGAAGTTGC . 96.0 42.0 72.0 0.0 . 17 . . Atlas-SNP LRRC14 9684 hgsc.bcm.edu hg19 8 145746113 145746113 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRC14 NM_001272036 exon4 c.G821A p.R274H ACTTCCGCTACTT . 19.0 9.0 18.0 0.0 . 25 . . Atlas-SNP LRRC14 9684 hgsc.bcm.edu hg19 8 145746554 145746554 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRC14 NM_001272036 exon5 c.T1174C p.C392R ACTCAGTGCGCCA . 49.0 15.0 71.0 0.0 . 25 . . Atlas-SNP LRRC24 441381 hgsc.bcm.edu hg19 8 145750253 145750253 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRC24 NM_001024678 exon2 c.T106C p.C36R CGCCACACTCCAC . 67.0 21.0 62.0 0.0 . 11 . . Atlas-SNP C8orf82 414919 hgsc.bcm.edu hg19 8 145752948 145752948 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C8orf82 NM_001001795 exon3 c.G429A p.A143A CAGGCGCGCCGGC . 8.0 7.0 15.0 0.0 . 7 . . Atlas-SNP ZNF517 340385 hgsc.bcm.edu hg19 8 146033090 146033090 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF517 NM_213605 exon5 c.C789T p.C263C CGCATGCGGCGAG . 69.0 29.0 83.0 0.0 . 30 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2047346 2047346 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SMARCA2 NM_139045 exon5 c.C908A p.P303H CAGTGCCCGGGCC . 358.0 17.0 367.0 0.0 . 313 . . Atlas-SNP GLIS3 169792 hgsc.bcm.edu hg19 9 4118184 4118184 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GLIS3 NM_001042413 exon4 c.C1294T p.R432C CCAGGCGTTCGGT . 111.0 42.0 114.0 0.0 . 152 . . Atlas-SNP KIAA1432 57589 hgsc.bcm.edu hg19 9 5772941 5772941 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1432 NM_020829 exon25 c.G3844A p.V1282I TGCATCGTTATAG . 88.0 35.0 93.0 0.0 . 97 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13192209 13192209 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MPDZ NM_003829 exon15 c.G1889A p.C630Y CGACAGCACACCA . 110.0 39.0 110.0 0.0 . 324 . . Atlas-SNP ACO1 48 hgsc.bcm.edu hg19 9 32450103 32450103 + Silent SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ACO1 NM_002197 exon21 c.C2664G p.A888A GATGGCCAAGTAG . 130.0 60.0 163.0 0.0 . 149 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35399263 35399263 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UNC13B NM_006377 exon33 c.C3933A p.P1311P TCTGCCCCCACTC . 147.0 53.0 138.0 0.0 . 153 . . Atlas-SNP RUSC2 9853 hgsc.bcm.edu hg19 9 35558293 35558293 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RUSC2 NM_014806 exon7 c.G3160A p.A1054T CTCAAGGCCTTTG . 53.0 11.0 64.0 0.0 . 88 . . Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35674060 35674060 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CA9 NM_001216 exon1 c.T104G p.V35G TGCCTGTCCATCC . 91.0 32.0 84.0 0.0 . 48 . . Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35705588 35705588 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TLN1 NM_006289 exon43 c.C5693T p.S1898L GCCTCCGAGGCCA . 80.0 37.0 80.0 0.0 . 185 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37707440 37707440 + Silent SNP C C T rs139243880 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FRMPD1 NM_014907 exon3 c.C129T p.P43P TGGGCCCGCCAGG . 155.0 68.0 115.0 0.0 . 237 . C|1.000;T|0.000 Atlas-SNP SLC25A51 92014 hgsc.bcm.edu hg19 9 37888305 37888305 + Nonsense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_033412 exon3 c.T243A p.Y81X TCCACGATACAAA . 159.0 52.0 144.0 0.0 . . . . Atlas-SNP C9orf135 138255 hgsc.bcm.edu hg19 9 72435841 72435841 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C9orf135 NM_001010940 exon1 c.C46T p.Q16X AGGAAGCAACACT . 82.0 24.0 84.0 0.0 . 25 . . Atlas-SNP ALDH1A1 216 hgsc.bcm.edu hg19 9 75567885 75567885 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ALDH1A1 NM_000689 exon1 c.T32A p.V11D AGTAGGACAGGTA . 142.0 51.0 136.0 0.0 . 98 . . Atlas-SNP TLE4 7091 hgsc.bcm.edu hg19 9 82333837 82333837 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TLE4 NM_007005 exon15 c.A1541T p.D514V TCTGGGACATCAG . 151.0 66.0 122.0 0.0 . 187 . . Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84607569 84607569 + Silent SNP T T A rs145735905 bycluster;by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001001670 exon4 c.T2184A p.I728I GAGAATTCATGGA . 342.0 139.0 330.0 0.0 . . . T|0.998;C|0.002 Atlas-SNP KIF27 55582 hgsc.bcm.edu hg19 9 86495341 86495341 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIF27 NM_017576 exon11 c.T2514C p.A838A CTCATTAGCACGT . 60.0 27.0 50.0 0.0 . 103 . . Atlas-SNP SPATA31C2 645961 hgsc.bcm.edu hg19 9 90747272 90747272 + Missense_Mutation SNP G G A rs373582239 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001166137 exon4 c.C680T p.P227L CCTTTCGGAGGAG . 106.0 42.0 103.0 0.0 . . . . Atlas-SNP NXNL2 158046 hgsc.bcm.edu hg19 9 91150438 91150438 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NXNL2 NM_145283 exon1 c.C89T p.A30V TGGTGGCACTGTA . 122.0 50.0 171.0 0.0 . 13 . . Atlas-SNP S1PR3 1903 hgsc.bcm.edu hg19 9 91617238 91617238 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . S1PR3 NM_005226 exon2 c.A1123T p.I375F AATGGGATCTTCT . 103.0 40.0 92.0 0.0 . 49 . . Atlas-SNP IARS 3376 hgsc.bcm.edu hg19 9 95021242 95021242 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IARS NM_013417 exon19 c.A1910G p.N637S CGGAGGTTTTCTG . 78.0 33.0 86.0 0.0 . 74 . . Atlas-SNP ECM2 1842 hgsc.bcm.edu hg19 9 95263292 95263292 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ECM2 NM_001393 exon9 c.G1648A p.V550I ACGGGACGTGATA . 147.0 50.0 159.0 0.0 . 147 . . Atlas-SNP ZNF510 22869 hgsc.bcm.edu hg19 9 99521523 99521523 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF510 NM_014930 exon6 c.A1589C p.N530T CTGAGGTTTGACT . 91.0 6.0 101.0 0.0 . 59 . . Atlas-SNP ZNF782 158431 hgsc.bcm.edu hg19 9 99580289 99580289 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF782 NM_001001662 exon6 c.A2016G p.K672K ATAGGGTTTCTCC . 160.0 10.0 166.0 0.0 . 64 . . Atlas-SNP INVS 27130 hgsc.bcm.edu hg19 9 103054739 103054739 + Missense_Mutation SNP C C T rs370949695 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 INVS,NS,carcinoma,0,1 INVS NM_014425 exon14 c.C2200T p.R734W GATGAGCGGTGTG . 223.0 91.0 250.0 0.0 . 81 . . Atlas-SNP LPPR1 0 hgsc.bcm.edu hg19 9 104079724 104079724 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_207299 exon7 c.A891G p.V297V TGGAGTACCCCTA . 155.0 62.0 196.0 0.0 . . . . Atlas-SNP GRIN3A 116443 hgsc.bcm.edu hg19 9 104340102 104340102 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GRIN3A NM_133445 exon8 c.T2956A p.S986T TAAATGATGTATT . 45.0 12.0 63.0 0.0 . 186 . . Atlas-SNP KIAA0368 23392 hgsc.bcm.edu hg19 9 114176260 114176260 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA0368 NM_001080398 exon21 c.C2528T p.P843L ATAACCGGCAAAC . 91.0 23.0 80.0 0.0 . 144 . . Atlas-SNP SLC46A2 57864 hgsc.bcm.edu hg19 9 115648748 115648748 + Silent SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC46A2 NM_033051 exon3 c.T1362A p.I454I AATTGGAATGATG . 164.0 60.0 148.0 0.0 . 30 . . Atlas-SNP ALAD 210 hgsc.bcm.edu hg19 9 116153902 116153902 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ALAD NM_000031 exon4 c.T166C p.Y56H CACCATACCTGTG . 64.0 28.0 79.0 0.0 . 36 . . Atlas-SNP FBXW2 26190 hgsc.bcm.edu hg19 9 123533666 123533666 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FBXW2 NM_012164 exon7 c.G1036A p.G346S AGAGACCAAGTGC . 98.0 33.0 108.0 0.0 . 34 . . Atlas-SNP DAB2IP 153090 hgsc.bcm.edu hg19 9 124534910 124534910 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DAB2IP_ENST00000259371,NS,carcinoma,0,2 DAB2IP NM_032552 exon12 c.G2019A p.P673P GTTACCGTCTCCA . 80.0 27.0 95.0 0.0 . 150 . . Atlas-SNP ANGPTL2 23452 hgsc.bcm.edu hg19 9 129854031 129854031 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANGPTL2 NM_012098 exon4 c.C1200T p.Y400Y GCCATGGTAGCGC . 99.0 32.0 110.0 0.0 . 46 . . Atlas-SNP GARNL3 84253 hgsc.bcm.edu hg19 9 130027161 130027161 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GARNL3 NM_032293 exon1 c.T5C p.V2A AAATGGTAGTTGA . 113.0 47.0 129.0 0.0 . 83 . . Atlas-SNP CDK9 1025 hgsc.bcm.edu hg19 9 130551527 130551527 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDK9 NM_001261 exon7 c.T824C p.V275A GGAAGGTGAAGGA . 109.0 45.0 93.0 0.0 . 22 . . Atlas-SNP NAIF1 203245 hgsc.bcm.edu hg19 9 130829075 130829075 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAIF1 NM_197956 exon1 c.C306T p.D102D AGCTCCGTCCTCC . 72.0 29.0 90.0 0.0 . 36 . . Atlas-SNP USP20 10868 hgsc.bcm.edu hg19 9 132637022 132637022 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . USP20 NM_001008563 exon18 c.C1908T p.H636H CCACCACGGCACG . 78.0 33.0 90.0 0.0 . 186 . . Atlas-SNP PRRC2B 84726 hgsc.bcm.edu hg19 9 134353960 134353960 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PRRC2B_ENST00000357304,rectum,carcinoma,0,2 PRRC2B NM_013318 exon17 c.G4712A p.R1571H AGCAGCGCCGCCT . 93.0 46.0 114.0 0.0 . 266 . . Atlas-SNP SETX 23064 hgsc.bcm.edu hg19 9 135140223 135140223 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 SETX NM_015046 exon26 c.A7437G p.I2479M TGGGGCTATGGTA . 103.0 50.0 100.0 0.0 . 234 . . Atlas-SNP CACFD1 11094 hgsc.bcm.edu hg19 9 136330530 136330530 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CACFD1 NM_017586 exon3 c.A281T p.D94V AGGTGGACCGGCT . 69.0 31.0 90.0 0.0 . 1 . . Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139231495 139231495 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPSM1 NM_015597 exon4 c.C544T p.R182X GATGTCCGAGAGA . 89.0 29.0 122.0 0.0 . 50 . . Atlas-SNP SNAPC4 6621 hgsc.bcm.edu hg19 9 139288750 139288750 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SNAPC4 NM_003086 exon6 c.T583C p.S195P CCACTGACTTTCG . 86.0 35.0 86.0 0.0 . 82 . . Atlas-SNP EGFL7 51162 hgsc.bcm.edu hg19 9 139564144 139564144 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EGFL7 NM_016215 exon6 c.C284T p.T95I AGAGGACCAGCGG . 107.0 6.0 113.0 0.0 . 11 . . Atlas-SNP ZMYND19 116225 hgsc.bcm.edu hg19 9 140477533 140477533 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZMYND19 NM_138462 exon5 c.C442T p.R148W AATACCGGGTCAC . 98.0 19.0 107.0 0.0 . 16 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140881287 140881287 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CACNA1B NM_001243812 exon15 c.C1955A p.A652D CTGCCGCCATCCT . 66.0 21.0 82.0 0.0 . 266 . . Atlas-SNP GDI2 2665 hgsc.bcm.edu hg19 10 5827986 5827986 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GDI2 NM_001494 exon5 c.G416A p.R139H CTGAAGCGACGTT . 36.0 13.0 60.0 0.0 . 26 . . Atlas-SNP ITIH5 80760 hgsc.bcm.edu hg19 10 7608361 7608361 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITIH5 NM_030569 exon13 c.T2159C p.V720A CCGTTCACTGTGA . 35.0 21.0 84.0 0.0 . 343 . . Atlas-SNP RPP38 10557 hgsc.bcm.edu hg19 10 15145341 15145341 + Missense_Mutation SNP C C T rs138934702 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RPP38 NM_001265601 exon2 c.C28T p.R10W CCGGGGCGGGGAT . 79.0 37.0 130.0 0.0 . 26 . C|1.000;T|0.000 Atlas-SNP ITGA8 8516 hgsc.bcm.edu hg19 10 15590538 15590538 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITGA8 NM_003638 exon27 c.C2796T p.I932I ACAGGAGATTTGT . 76.0 35.0 90.0 0.0 . 230 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16877086 16877086 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CUBN NM_001081 exon64 c.A10289G p.N3430S GTGTGGTTCTGGG . 111.0 8.0 153.0 0.0 . 515 . . Atlas-SNP SKIDA1 387640 hgsc.bcm.edu hg19 10 21804625 21804625 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 C10orf140_ENST00000449193,colon,carcinoma,0,2 . NM_207371 exon4 c.C2127T p.C709C GCACTCGCACTTT . 107.0 29.0 109.0 1.0 . . . . Atlas-SNP ARMC3 219681 hgsc.bcm.edu hg19 10 23326257 23326257 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARMC3 NM_173081 exon19 c.C2468T p.A823V GTAGAGCGTGGAA . 133.0 52.0 124.0 0.0 . 102 . . Atlas-SNP SVIL 6840 hgsc.bcm.edu hg19 10 29769474 29769474 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SVIL NM_021738 exon29 c.G5369A p.S1790N GCCGTGCTCACCA . 116.0 42.0 117.0 0.0 . 226 . . Atlas-SNP EPC1 80314 hgsc.bcm.edu hg19 10 32581987 32581987 + Nonsense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 EPC1,colon,carcinoma,0,1 EPC1 NM_025209 exon4 c.C595T p.R199X CATCTCGCTTCTC . 87.0 33.0 92.0 0.0 . 74 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37447483 37447483 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANKRD30A NM_052997 exon15 c.A1701G p.L567L AGCCTTAGAATTG . 290.0 119.0 268.0 0.0 . 448 . . Atlas-SNP ALOX5 240 hgsc.bcm.edu hg19 10 45924153 45924153 + Missense_Mutation SNP G G A rs28395872 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ALOX5 NM_000698 exon7 c.G922A p.A308T CTGGCCGCTCCCA . 130.0 43.0 142.0 0.0 . 88 . G|0.973;T|0.027 Atlas-SNP RBP3 5949 hgsc.bcm.edu hg19 10 48388542 48388542 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBP3 NM_002900 exon1 c.T2336C p.V779A TCGATCACCAGCG . 110.0 43.0 126.0 0.0 . 152 . . Atlas-SNP GDF2 2658 hgsc.bcm.edu hg19 10 48414329 48414329 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GDF2 NM_016204 exon2 c.A539G p.D180G CAGGCATCTGTTC . 96.0 37.0 80.0 0.0 . 77 . . Atlas-SNP MAPK8 5599 hgsc.bcm.edu hg19 10 49628362 49628362 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAPK8 NM_139047 exon5 c.C615T p.N205N GGAAAACGGTCAG . 99.0 7.0 108.0 0.0 . 118 . . Atlas-SNP CHAT 1103 hgsc.bcm.edu hg19 10 50854625 50854625 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHAT NM_020549 exon8 c.G1186A p.V396M GGAGGCGTGGAGC . 161.0 76.0 149.0 0.0 . 162 . . Atlas-SNP A1CF 29974 hgsc.bcm.edu hg19 10 52587939 52587939 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . A1CF NM_001198820 exon8 c.T745C p.S249P AGGTAGACAGCAT . 63.0 20.0 58.0 0.0 . 190 . . Atlas-SNP CSTF2T 23283 hgsc.bcm.edu hg19 10 53458564 53458564 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CSTF2T NM_015235 exon1 c.A746T p.D249V GGAATGTCCTTCA . 65.0 24.0 85.0 0.0 . 64 . . Atlas-SNP SIRT1 23411 hgsc.bcm.edu hg19 10 69672422 69672422 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIRT1 NM_012238 exon8 c.A1549G p.T517A CCACGAACACAAA . 175.0 73.0 182.0 0.0 . 38 . . Atlas-SNP SAR1A 56681 hgsc.bcm.edu hg19 10 71912317 71912317 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SAR1A NM_020150 exon7 c.G512A p.R171H ATGGGGCGAGCAT . 83.0 38.0 92.0 0.0 . 19 . . Atlas-SNP PSAP 5660 hgsc.bcm.edu hg19 10 73594212 73594212 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PSAP NM_001042466 exon2 c.G91C p.V31L ACCACACTGCCGA . 72.0 28.0 99.0 0.0 . 43 . . Atlas-SNP CHST3 9469 hgsc.bcm.edu hg19 10 73767711 73767711 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHST3 NM_004273 exon3 c.G922A p.A308T GTGCTGGCCTCGC . 195.0 89.0 202.0 0.0 . 36 . . Atlas-SNP ZMIZ1 57178 hgsc.bcm.edu hg19 10 81065903 81065903 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZMIZ1 NM_020338 exon22 c.C2470T p.P824S TGGCGGCCGGTGC . 42.0 14.0 51.0 0.0 . 101 . . Atlas-SNP WAPAL 23063 hgsc.bcm.edu hg19 10 88197700 88197700 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WAPAL NM_015045 exon18 c.T3484A p.F1162I TCAAAAATTTTTT . 415.0 133.0 497.0 0.0 . 81 . . Atlas-SNP PANK1 53354 hgsc.bcm.edu hg19 10 91371568 91371568 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PANK1 NM_148977 exon2 c.G941T p.S314I GCACAGCTGGGAA . 128.0 51.0 134.0 0.0 . 35 . . Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91520371 91520371 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIF20B NM_016195 exon28 c.A4649T p.E1550V GTTTTGAAATTTC . 257.0 97.0 307.0 0.0 . 191 . . Atlas-SNP ANKRD1 27063 hgsc.bcm.edu hg19 10 92675939 92675939 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANKRD1 NM_014391 exon6 c.G640A p.A214T CTCGGGCGCTAAT . 76.0 17.0 113.0 0.0 . 50 . . Atlas-SNP RRP12 23223 hgsc.bcm.edu hg19 10 99131898 99131898 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RRP12 NM_015179 exon20 c.G2275C p.A759P CCAAGGCCACGAC . 77.0 17.0 75.0 0.0 . 97 . . Atlas-SNP PKD2L1 9033 hgsc.bcm.edu hg19 10 102058491 102058491 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PKD2L1 NM_016112 exon4 c.T559C p.F187L AGATGAAGGAGTG . 131.0 35.0 130.0 0.0 . 103 . . Atlas-SNP SEMA4G 57715 hgsc.bcm.edu hg19 10 102740362 102740362 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SEMA4G NM_001203244 exon11 c.T1379A p.V460D CCGTAGTCCTGGG . 117.0 43.0 108.0 0.0 . 55 . . Atlas-SNP LDB1 8861 hgsc.bcm.edu hg19 10 103870859 103870859 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LDB1 NM_001113407 exon4 c.T216C p.F72F AAGCTCAAATATT . 67.0 37.0 71.0 0.0 . 61 . . Atlas-SNP LOC729020 0 hgsc.bcm.edu hg19 10 105005831 105005831 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001143909 exon1 c.G78A p.M26I CCAGATGCTAGAC . 157.0 52.0 151.0 0.0 . . . . Atlas-SNP PDCD11 22984 hgsc.bcm.edu hg19 10 105182857 105182857 + Silent SNP C C A rs141472462 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PDCD11 NM_014976 exon18 c.C2610A p.P870P AGTGCCCGACCTG . 133.0 58.0 158.0 0.0 . 160 . C|1.000;T|0.000 Atlas-SNP SLK 9748 hgsc.bcm.edu hg19 10 105762305 105762305 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLK NM_014720 exon9 c.A1369T p.I457L ATAATGATAACCT . 101.0 46.0 107.0 0.0 . 107 . . Atlas-SNP ITPRIP 85450 hgsc.bcm.edu hg19 10 106075738 106075738 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITPRIP NM_001272013 exon2 c.G72A p.P24P CTCCCGCGGGAAC . 52.0 17.0 52.0 0.0 . 44 . . Atlas-SNP SMC3 9126 hgsc.bcm.edu hg19 10 112337617 112337617 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SMC3,NS,carcinoma,0,2 SMC3 NM_005445 exon6 c.C295T p.R99X TCACTTCGAAGAG . 59.0 24.0 88.0 0.0 . 103 . . Atlas-SNP TCF7L2 6934 hgsc.bcm.edu hg19 10 114901029 114901029 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TCF7L2 NM_001146283 exon6 c.G711A p.P237P CACGCCGGGAAAC . 104.0 32.0 138.0 0.0 . 298 . . Atlas-SNP CCDC172 374355 hgsc.bcm.edu hg19 10 118116936 118116936 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_198515 exon6 c.C493T p.Q165X GAACTTCAAAAAC . 229.0 10.0 249.0 0.0 . . . . Atlas-SNP VAX1 11023 hgsc.bcm.edu hg19 10 118896110 118896110 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VAX1 NM_001112704 exon2 c.A302C p.K101T GTCCTCTTAGGCC . 123.0 59.0 109.0 0.0 . 50 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134628105 134628105 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TTC40 NM_001200049 exon53 c.C7261T p.P2421S CGTATGGGTCCAC . 145.0 12.0 180.0 0.0 . 100 . . Atlas-SNP ATHL1 80162 hgsc.bcm.edu hg19 11 294325 294325 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATHL1 NM_025092 exon13 c.A1867C p.S623R AGAGTGAGCGTCT . 157.0 71.0 101.0 0.0 . 88 . . Atlas-SNP C11orf35 256329 hgsc.bcm.edu hg19 11 554999 554999 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C11orf35 NM_173573 exon14 c.A1886G p.D629G CAGGTGTCCGCGG . 104.0 32.0 100.0 0.0 . 22 . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 609548 609548 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PHRF1 NM_020901 exon14 c.G4089A p.A1363A TGTGGCGCCTGCG . 51.0 17.0 53.0 0.0 . 188 . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 610607 610607 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PHRF1 NM_020901 exon16 c.C4520T p.P1507L GCCTGCCGCTAGT . 111.0 45.0 97.0 0.0 . 188 . . Atlas-SNP EPS8L2 64787 hgsc.bcm.edu hg19 11 721123 721123 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPS8L2 NM_022772 exon8 c.C617T p.A206V GCCCGGCGCCCAT . 115.0 17.0 103.0 0.0 . 42 . . Atlas-SNP SLC25A22 79751 hgsc.bcm.edu hg19 11 792953 792953 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC25A22 NM_001191061 exon6 c.G329A p.G110D CCACAGCCCGCCA . 98.0 44.0 81.0 0.0 . 19 . . Atlas-SNP AP2A2 161 hgsc.bcm.edu hg19 11 972110 972110 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AP2A2 NM_012305 exon4 c.C328T p.R110C CTGATCCGCCTGA . 66.0 30.0 51.0 0.0 . 50 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1015776 1015776 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 MUC6_ENST00000421673,colon,carcinoma,0,2 MUC6 NM_005961 exon31 c.C7025T p.T2342M GTGGGCGTAGGTG . 190.0 73.0 137.0 0.0 . 408 . . Atlas-SNP CDKN1C 1028 hgsc.bcm.edu hg19 11 2905227 2905227 + Splice_Site SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDKN1C NM_001122630 exon4 c.923+2T>C . GTACTCACTTGGC . 154.0 67.0 178.0 0.0 . 4 . . Atlas-SNP RHOG 391 hgsc.bcm.edu hg19 11 3848965 3848965 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RHOG NM_001665 exon2 c.C404T p.A135V ATGGGCGCCTGGC . 63.0 24.0 98.0 0.0 . 13 . . Atlas-SNP ST5 6764 hgsc.bcm.edu hg19 11 8751983 8751983 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ST5 NM_005418 exon6 c.T854C p.I285T TTCTGGATCCGGC . 42.0 11.0 48.0 0.0 . 85 . . Atlas-SNP DENND5A 23258 hgsc.bcm.edu hg19 11 9161225 9161225 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DENND5A NM_015213 exon23 c.A3857C p.D1286A CAGATGTCGATGC . 39.0 13.0 30.0 0.0 . 84 . . Atlas-SNP SPON1 10418 hgsc.bcm.edu hg19 11 14264943 14264943 + Splice_Site SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPON1 NM_006108 exon7 c.889+1G>A . CAACGTGTAAGTA . 56.0 25.0 103.0 0.0 . 65 . . Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 20119177 20119177 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAV2 NM_001244963 exon33 c.G6244A p.V2082I GACAGCGTTCTTG . 95.0 33.0 126.0 0.0 . 255 . . Atlas-SNP NELL1 4745 hgsc.bcm.edu hg19 11 21135203 21135203 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NELL1 NM_006157 exon13 c.T1369C p.L457L CCTGGGTTATATC . 177.0 71.0 148.0 0.0 . 179 . . Atlas-SNP ARL14EP 120534 hgsc.bcm.edu hg19 11 30354502 30354502 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_152316 exon3 c.A516G p.K172K AGAAAAAAGAAGG . 85.0 37.0 64.0 0.0 . . . . Atlas-SNP MPPED2 744 hgsc.bcm.edu hg19 11 30435807 30435807 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MPPED2 NM_001584 exon5 c.C734T p.P245L AGCTTGGGCCGGA . 102.0 44.0 130.0 0.0 . 106 . . Atlas-SNP PRDM11 56981 hgsc.bcm.edu hg19 11 45241211 45241211 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PRDM11 NM_001256695 exon6 c.C645T p.I215I GGACATCCGGCCT . 76.0 24.0 90.0 0.0 . 53 . . Atlas-SNP DDB2 1643 hgsc.bcm.edu hg19 11 47238524 47238524 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DDB2 NM_000107 exon3 c.T380C p.V127A GCACTGTGGCTGT . 145.0 11.0 160.0 0.0 . 31 . . Atlas-SNP SPI1 6688 hgsc.bcm.edu hg19 11 47376855 47376855 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPI1 NM_001080547 exon5 c.A739G p.K247E GCTTCTTCTTCAC . 42.0 9.0 32.0 0.0 . 21 . . Atlas-SNP C1QTNF4 114900 hgsc.bcm.edu hg19 11 47611408 47611408 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C1QTNF4 NM_031909 exon2 c.G955A p.A319T GCGGGGCGGCGGG . 173.0 78.0 136.0 0.0 . 19 . . Atlas-SNP OR4C11 219429 hgsc.bcm.edu hg19 11 55371494 55371494 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR4C11 NM_001004700 exon1 c.A356T p.D119V TAGCGATCAACAG . 155.0 64.0 138.0 0.0 . 73 . . Atlas-SNP OR5L1 219437 hgsc.bcm.edu hg19 11 55579121 55579121 + Missense_Mutation SNP A A T rs142577076 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 OR5L1,NS,carcinoma,0,1 OR5L1 NM_001004738 exon1 c.A179T p.Y60F CCATGTACTTTTT . 153.0 62.0 103.0 0.0 . 145 . A|1.000;G|0.000 Atlas-SNP OR5D16 390144 hgsc.bcm.edu hg19 11 55606628 55606628 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR5D16 NM_001005496 exon1 c.A401G p.Y134C TGCTCTACACAGT . 84.0 37.0 106.0 0.0 . 94 . . Atlas-SNP OR8I2 120586 hgsc.bcm.edu hg19 11 55860942 55860942 + Silent SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR8I2 NM_001003750 exon1 c.T159G p.S53S GGATTCTCAGCTT . 71.0 36.0 72.0 0.0 . 119 . . Atlas-SNP OR8H3 390152 hgsc.bcm.edu hg19 11 55890135 55890135 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR8H3 NM_001005201 exon1 c.G287A p.G96D TCACGGGCTGCTT . 120.0 7.0 99.0 0.0 . 92 . . Atlas-SNP OR5AR1 219493 hgsc.bcm.edu hg19 11 56432083 56432083 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR5AR1 NM_001004730 exon1 c.A922G p.K308E GGAAAAAAATCTC . 56.0 23.0 56.0 0.0 . 68 . . Atlas-SNP PRG2 5553 hgsc.bcm.edu hg19 11 57155302 57155302 + Missense_Mutation SNP G G A rs142359007 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PRG2_ENST00000311862,colon,carcinoma,0,1 PRG2 NM_002728 exon5 c.C535T p.R179C TCCAGCGGCTGCC . 161.0 65.0 202.0 0.0 . 65 . G|1.000;A|0.000 Atlas-SNP VPS37C 55048 hgsc.bcm.edu hg19 11 60899319 60899319 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VPS37C NM_017966 exon5 c.G1041A p.P347P CCCCGGCGGTGGT . 33.0 14.0 23.0 0.0 . 30 . . Atlas-SNP PPP1R32 220004 hgsc.bcm.edu hg19 11 61249285 61249285 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001170753 exon2 c.A4T p.M2L ATCATGATGGGGA . 58.0 22.0 74.0 0.0 . . . . Atlas-SNP FEN1 2237 hgsc.bcm.edu hg19 11 61563849 61563849 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 FEN1,colon,carcinoma,0,1 FEN1 NM_004111 exon2 c.G1016A p.R339H AGGGCCGCCTGGA . 190.0 72.0 227.0 0.0 . 15 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62303477 62303477 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AHNAK NM_001620 exon3 c.G94A p.V32I CAAAGACGCCGTC . 62.0 33.0 45.0 0.0 . 532 . . Atlas-SNP EML3 256364 hgsc.bcm.edu hg19 11 62370721 62370721 + Splice_Site SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EML3 NM_153265 exon21 c.2258-2A>C . GTCCCCTGGGGAG . 25.0 11.0 30.0 0.0 . 61 . . Atlas-SNP CHRM1 1128 hgsc.bcm.edu hg19 11 62677349 62677349 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHRM1 NM_000738 exon2 c.C1224T p.Y408Y GTTGACGTAGCAC . 128.0 44.0 150.0 0.0 . 29 . . Atlas-SNP MAP4K2 5871 hgsc.bcm.edu hg19 11 64557055 64557055 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAP4K2 NM_004579 exon32 c.C2417T p.A806V CTGTGCGCCTCTG . 114.0 29.0 130.0 0.0 . 83 . . Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64592001 64592001 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CDC42BPG NM_017525 exon37 c.G4600A p.V1534I CTGAGACCTGCAG . 358.0 138.0 347.0 0.0 . 101 . . Atlas-SNP EHD1 10938 hgsc.bcm.edu hg19 11 64622239 64622239 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EHD1 NM_006795 exon5 c.G1171A p.A391T GCCGCGCGATGTC . 29.0 10.0 32.0 0.0 . 31 . . Atlas-SNP NAALADL1 10004 hgsc.bcm.edu hg19 11 64813529 64813529 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAALADL1 NM_005468 exon16 c.G1913A p.R638H GATATGCGTTGGC . 52.0 20.0 46.0 0.0 . 58 . . Atlas-SNP RELA 5970 hgsc.bcm.edu hg19 11 65426225 65426225 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RELA NM_021975 exon7 c.G628T p.D210Y TCTCATCCCCACC . 57.0 38.0 78.0 0.0 . 44 . . Atlas-SNP RBM4 5936 hgsc.bcm.edu hg19 11 66411228 66411228 + Silent SNP C C T rs372104227 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBM4 NM_002896 exon3 c.C720T p.S240S TGCCTCCGTGTAT . 49.0 24.0 50.0 0.0 . 34 . . Atlas-SNP ANKRD13D 338692 hgsc.bcm.edu hg19 11 67069033 67069033 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANKRD13D NM_207354 exon13 c.C1423T p.R475C ATGGAGCGCAACG . 109.0 42.0 85.0 0.0 . 71 . . Atlas-SNP MRGPRF 116535 hgsc.bcm.edu hg19 11 68772834 68772834 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MRGPRF NM_001098515 exon3 c.G944A p.R315Q CCGTCCCGCAGGG . 35.0 12.0 47.0 0.0 . 22 . . Atlas-SNP SHANK2 22941 hgsc.bcm.edu hg19 11 70332826 70332826 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SHANK2 NM_133266 exon10 c.C1808T p.A603V CTGCTCGCGGAGG . 73.0 29.0 92.0 0.0 . 340 . . Atlas-SNP DNAJB13 374407 hgsc.bcm.edu hg19 11 73675956 73675956 + Nonsense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAJB13 NM_153614 exon4 c.T368A p.L123X TAGATTTGAACTT . 97.0 30.0 103.0 0.0 . 28 . . Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73801915 73801915 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C2CD3 NM_015531 exon20 c.G3584A p.R1195Q ACAGTTCGGGCAG . 99.0 41.0 94.0 0.0 . 288 . . Atlas-SNP ARRB1 408 hgsc.bcm.edu hg19 11 74984011 74984011 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARRB1 NM_020251 exon12 c.G926A p.G309D TTGGCACCTTCCC . 89.0 37.0 92.0 0.0 . 37 . . Atlas-SNP B3GNT6 192134 hgsc.bcm.edu hg19 11 76751049 76751049 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . B3GNT6 NM_138706 exon2 c.C454T p.R152C CCAGTGCGCCGCC . 35.0 10.0 23.0 0.0 . 27 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76919769 76919769 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYO7A NM_000260 exon44 c.T5972C p.V1991A ACCAGGTGTTCTT . 48.0 23.0 46.0 0.0 . 164 . . Atlas-SNP GAB2 9846 hgsc.bcm.edu hg19 11 77930356 77930356 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GAB2 NM_080491 exon10 c.C1993T p.R665W ACTGCCGCACGTC . 73.0 30.0 80.0 0.0 . 63 . . Atlas-SNP CCDC81 60494 hgsc.bcm.edu hg19 11 86126223 86126223 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCDC81 NM_001156474 exon13 c.A1559G p.E520G TGGTGGAAAAGCA . 216.0 80.0 226.0 0.0 . 89 . . Atlas-SNP KIAA1731 85459 hgsc.bcm.edu hg19 11 93429945 93429945 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA1731 NM_033395 exon15 c.A1867G p.I623V TCATTGATAACTG . 122.0 31.0 154.0 0.0 . 173 . . Atlas-SNP GPR83 10888 hgsc.bcm.edu hg19 11 94113391 94113391 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPR83 NM_016540 exon4 c.A1196G p.N399S AGGAGGTTATTGG . 132.0 47.0 154.0 0.0 . 47 . . Atlas-SNP CEP57 9702 hgsc.bcm.edu hg19 11 95562468 95562468 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CEP57 NM_014679 exon10 c.A1245G p.I415M CCAAATAACTAAA . 157.0 8.0 131.0 0.0 . 40 . . Atlas-SNP MTMR2 8898 hgsc.bcm.edu hg19 11 95580973 95580973 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MTMR2 NM_016156 exon10 c.T1084A p.S362T GTAATGATTCTCT . 138.0 41.0 157.0 0.0 . 79 . . Atlas-SNP MMP20 9313 hgsc.bcm.edu hg19 11 102482511 102482511 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MMP20 NM_004771 exon3 c.T498A p.D166E CATAATATCCGCT . 38.0 18.0 54.0 0.0 . 52 . . Atlas-SNP POU2AF1 5450 hgsc.bcm.edu hg19 11 111225251 111225251 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . POU2AF1 NM_006235 exon5 c.A506G p.E169G TGGTGCTCTGGGC . 126.0 50.0 113.0 0.0 . 23 . . Atlas-SNP ZW10 9183 hgsc.bcm.edu hg19 11 113609090 113609090 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZW10 NM_004724 exon13 c.C1780T p.R594W GTGCCCGCATTTG . 73.0 33.0 82.0 0.0 . 49 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118377321 118377321 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MLL NM_001197104 exon27 c.A10714G p.I3572V GCACACATTCCAG . 183.0 81.0 151.0 0.0 . 548 . . Atlas-SNP BCL9L 283149 hgsc.bcm.edu hg19 11 118779169 118779169 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BCL9L NM_182557 exon2 c.C222T p.G74G CCCCACGCCCTTC . 100.0 38.0 117.0 0.0 . 254 . . Atlas-SNP CBL 867 hgsc.bcm.edu hg19 11 119169140 119169140 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CBL NM_005188 exon15 c.A2324T p.D775V GGTATGATGTCCC . 156.0 71.0 130.0 0.0 . 408 . . Atlas-SNP TECTA 7007 hgsc.bcm.edu hg19 11 121039544 121039544 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TECTA NM_005422 exon19 c.C5909T p.A1970V CTGACGCCACACA . 156.0 21.0 184.0 0.0 . 329 . . Atlas-SNP OR8B4 283162 hgsc.bcm.edu hg19 11 124294491 124294491 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR8B4 NM_001005196 exon1 c.T277C p.Y93H CCACATAAGAGAT . 135.0 55.0 139.0 0.0 . 60 . . Atlas-SNP SIAE 54414 hgsc.bcm.edu hg19 11 124509754 124509754 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIAE NM_170601 exon8 c.G976A p.D326N ACAAATCTGAAGA . 60.0 20.0 56.0 0.0 . 37 . . Atlas-SNP HEPACAM 220296 hgsc.bcm.edu hg19 11 124791252 124791252 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HEPACAM NM_152722 exon7 c.G1033A p.A345T GCACGGCGGGAGA . 261.0 100.0 307.0 0.0 . 64 . . Atlas-SNP CHEK1 1111 hgsc.bcm.edu hg19 11 125514027 125514027 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CHEK1,colon,carcinoma,0,1 CHEK1 NM_001244846 exon10 c.G965A p.R322H AACCCCGCACAGG . 152.0 65.0 188.0 0.0 . 44 . . Atlas-SNP ARHGAP32 9743 hgsc.bcm.edu hg19 11 128936699 128936699 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGAP32 NM_001142685 exon6 c.T554G p.L185R ATACACAGATGAA . 95.0 42.0 90.0 0.0 . 307 . . Atlas-SNP NFRKB 4798 hgsc.bcm.edu hg19 11 129734929 129734929 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NFRKB NM_006165 exon24 c.A3781G p.N1261D GCTTATTGCCAGC . 126.0 56.0 136.0 0.0 . 101 . . Atlas-SNP SNX19 399979 hgsc.bcm.edu hg19 11 130784447 130784447 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SNX19 NM_014758 exon1 c.C1388T p.A463V ACAGAGGCGGTAA . 85.0 30.0 88.0 0.0 . 84 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133814238 133814238 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IGSF9B NM_014987 exon3 c.G286A p.A96T GAGATGCCTTATC . 60.0 22.0 100.0 0.0 . 290 . . Atlas-SNP TEAD4 7004 hgsc.bcm.edu hg19 12 3131073 3131073 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 TEAD4,NS,carcinoma,0,1 TEAD4 NM_003213 exon10 c.G787A p.E263K TACCTCGAAGCCG . 143.0 65.0 157.0 0.0 . 45 . . Atlas-SNP VWF 7450 hgsc.bcm.edu hg19 12 6128578 6128578 + Nonsense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VWF NM_000552 exon28 c.C4006T p.R1336X ACGGTCGCTTCCG . 86.0 32.0 104.0 0.0 . 338 . . Atlas-SNP TAPBPL 55080 hgsc.bcm.edu hg19 12 6562348 6562348 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TAPBPL NM_018009 exon2 c.C180A p.A60A AAGGGCCTCCCTT . 123.0 43.0 146.0 0.0 . 21 . . Atlas-SNP IFFO1 25900 hgsc.bcm.edu hg19 12 6657862 6657862 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IFFO1 NM_001193457 exon6 c.G1234A p.E412K TCTCCTCGTTGAT . 120.0 38.0 119.0 0.0 . 55 . . Atlas-SNP PTPN6 5777 hgsc.bcm.edu hg19 12 7069305 7069305 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTPN6 NM_080548 exon13 c.G1490A p.R497H CGCAGCGCTCGGG . 78.0 11.0 99.0 0.0 . 42 . . Atlas-SNP LRP6 4040 hgsc.bcm.edu hg19 12 12300444 12300444 + Missense_Mutation SNP G G A rs143966208 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 LRP6,NS,carcinoma,0,1 LRP6 NM_002336 exon15 c.C3253T p.R1085W CAGCCCGTTCAAT . 177.0 61.0 177.0 1.0 . 170 . G|1.000;A|0.000 Atlas-SNP DUSP16 80824 hgsc.bcm.edu hg19 12 12633224 12633224 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DUSP16 NM_030640 exon6 c.C748T p.R250C CGGAGCGGGAGAT . 104.0 37.0 109.0 0.0 . 64 . . Atlas-SNP RERG 85004 hgsc.bcm.edu hg19 12 15262428 15262428 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RERG NM_032918 exon5 c.G216A p.G72G CATGTGCCCCTCC . 140.0 56.0 173.0 0.0 . 30 . . Atlas-SNP SLCO1B3 28234 hgsc.bcm.edu hg19 12 20968682 20968682 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLCO1B3 NM_019844 exon3 c.C10A p.H4N GACCAACATCAAC . 56.0 30.0 75.0 0.0 . 151 . . Atlas-SNP CAPRIN2 65981 hgsc.bcm.edu hg19 12 30863317 30863317 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CAPRIN2 NM_001002259 exon18 c.G2903A p.R968H ATGCTACGGGAGT . 105.0 43.0 89.0 0.0 . 109 . . Atlas-SNP FGD4 121512 hgsc.bcm.edu hg19 12 32793225 32793225 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FGD4 NM_139241 exon17 c.G2059A p.A687T GCCCAGGCCACCA . 111.0 41.0 136.0 0.0 . 86 . . Atlas-SNP SLC2A13 114134 hgsc.bcm.edu hg19 12 40441899 40441899 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC2A13 NM_052885 exon2 c.A670C p.S224R CAACACTTGCAAA . 86.0 43.0 129.0 0.0 . 91 . . Atlas-SNP IRAK4 51135 hgsc.bcm.edu hg19 12 44161948 44161948 + Missense_Mutation SNP C C T rs377584435 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 IRAK4_ENST00000448290,caecum,carcinoma,0,5 IRAK4 NM_016123 exon2 c.C34T p.R12C TATGTGCGCTGCC . 219.0 38.0 213.0 0.0 . 77 . . Atlas-SNP ANO6 196527 hgsc.bcm.edu hg19 12 45725118 45725118 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANO6 NM_001204803 exon4 c.A254T p.D85V TTAATGATGGCCA . 527.0 218.0 565.0 0.0 . 163 . . Atlas-SNP SLC38A2 54407 hgsc.bcm.edu hg19 12 46760702 46760702 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC38A2 NM_018976 exon7 c.A508G p.K170E CATATTTCACTAT . 85.0 34.0 72.0 0.0 . 36 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49427950 49427950 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 MLL2_ENST00000301067,NS,carcinoma,0,4 MLL2 NM_003482 exon38 c.G10640A p.R3547H GCAGTGCGCTGCT . 47.0 24.0 63.0 0.0 . 1173 . . Atlas-SNP AQP6 363 hgsc.bcm.edu hg19 12 50367033 50367033 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AQP6 NM_001652 exon1 c.C77T p.A26V GCAGGGCGCTGTT . 51.0 13.0 91.0 0.0 . 25 . . Atlas-SNP AQP6 363 hgsc.bcm.edu hg19 12 50368266 50368266 + Splice_Site SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AQP6 NM_001652 exon2 c.561+1G>T . ATTGGGGTAAGGA . 46.0 24.0 46.0 0.0 . 25 . . Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50537820 50537820 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_147190 exon2 c.C218T p.A73V CAGAGTGCACAGG . 76.0 11.0 60.0 0.0 . . . . Atlas-SNP TFCP2 7024 hgsc.bcm.edu hg19 12 51512404 51512404 + Nonsense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TFCP2 NM_001173452 exon2 c.G274T p.G92X TCTAACCTTGATT . 89.0 16.0 100.0 0.0 . 49 . . Atlas-SNP SMAGP 57228 hgsc.bcm.edu hg19 12 51663059 51663059 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SMAGP NM_001031628 exon2 c.A4G p.T2A GGCTGGTCATTGT . 96.0 35.0 104.0 0.0 . 7 . . Atlas-SNP NR4A1 3164 hgsc.bcm.edu hg19 12 52448156 52448156 + Missense_Mutation SNP C C T rs375396767 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NR4A1 NM_001202233 exon3 c.C83T p.P28L CGAGTCCGGGACC . 72.0 12.0 61.0 0.0 . 77 . . Atlas-SNP KRT82 3888 hgsc.bcm.edu hg19 12 52799999 52799999 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KRT82 NM_033033 exon1 c.G63A p.S21S GACAGCCGAGTAT . 73.0 5.0 53.0 0.0 . 45 . . Atlas-SNP KRT2 3849 hgsc.bcm.edu hg19 12 53041638 53041638 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KRT2 NM_000423 exon6 c.A1124G p.Y375C TCCTCATACTGAT . 70.0 31.0 62.0 0.0 . 94 . . Atlas-SNP SMARCC2 6601 hgsc.bcm.edu hg19 12 56575357 56575357 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SMARCC2 NM_139067 exon10 c.C865T p.R289W TGTCCCGTCGATC . 119.0 46.0 156.0 0.0 . 212 . . Atlas-SNP IL23A 51561 hgsc.bcm.edu hg19 12 56733288 56733288 + Nonsense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 IL23A,NS,carcinoma,0,1 IL23A NM_016584 exon2 c.G241T p.G81X CCCCAAGGACTCA . 103.0 29.0 119.0 1.0 . 12 . . Atlas-SNP APOF 319 hgsc.bcm.edu hg19 12 56755672 56755672 + Silent SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . APOF NM_001638 exon2 c.T318G p.A106A CTGTAGAGCCCAA . 133.0 9.0 149.0 0.0 . 13 . . Atlas-SNP TIMELESS 8914 hgsc.bcm.edu hg19 12 56814391 56814391 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TIMELESS NM_003920 exon26 c.T3190C p.L1064L TGCGCAACAGCTG . 107.0 46.0 112.0 0.0 . 107 . . Atlas-SNP DTX3 196403 hgsc.bcm.edu hg19 12 58001004 58001004 + Missense_Mutation SNP G G A rs373278710 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DTX3 NM_178502 exon5 c.G358A p.A120T CACCGCGCAGGCC . 67.0 24.0 95.0 0.0 . 27 . . Atlas-SNP USP15 9958 hgsc.bcm.edu hg19 12 62785110 62785110 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . USP15 NM_001252078 exon16 c.T2134C p.F712L CGATTGTTTACAT . 279.0 105.0 269.0 0.0 . 105 . . Atlas-SNP MON2 23041 hgsc.bcm.edu hg19 12 62938760 62938760 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MON2 NM_015026 exon21 c.A2549G p.N850S CATTTAACCATGA . 392.0 155.0 406.0 0.0 . 160 . . Atlas-SNP SLC35E3 55508 hgsc.bcm.edu hg19 12 69145879 69145879 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC35E3 NM_018656 exon3 c.T581C p.M194T CTCCGATGTCATC . 100.0 42.0 123.0 0.0 . 23 . . Atlas-SNP RAB3IP 117177 hgsc.bcm.edu hg19 12 70188991 70188991 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RAB3IP NM_175623 exon6 c.C803T p.T268M CACCTACGCAGGA . 221.0 74.0 246.0 0.0 . 48 . . Atlas-SNP KCNMB4 27345 hgsc.bcm.edu hg19 12 70824288 70824288 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 KCNMB4,caecum,carcinoma,0,3 KCNMB4 NM_014505 exon3 c.G488A p.R163H TGCATCGCACTCA . 52.0 21.0 68.0 0.0 . 27 . . Atlas-SNP BBS10 79738 hgsc.bcm.edu hg19 12 76740856 76740856 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BBS10 NM_024685 exon2 c.T909C p.S303S ATTCTGACTATGT . 64.0 24.0 75.0 0.0 . 46 . . Atlas-SNP E2F7 144455 hgsc.bcm.edu hg19 12 77417817 77417817 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . E2F7 NM_203394 exon13 c.T2714A p.I905N CTGGGGATTTCTA . 69.0 32.0 84.0 0.0 . 201 . . Atlas-SNP MGAT4C 25834 hgsc.bcm.edu hg19 12 86377408 86377408 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MGAT4C NM_013244 exon6 c.A188G p.Q63R TTCAGTTGATGTG . 91.0 4.0 106.0 0.0 . 110 . . Atlas-SNP TMTC3 160418 hgsc.bcm.edu hg19 12 88582677 88582677 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMTC3 NM_181783 exon11 c.A1490G p.K497R GAACCAAAGAAGC . 433.0 101.0 462.0 0.0 . 75 . . Atlas-SNP LUM 4060 hgsc.bcm.edu hg19 12 91497984 91497984 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LUM NM_002345 exon3 c.G975T p.M325I TTCATACATATCC . 125.0 56.0 91.0 0.0 . 65 . . Atlas-SNP ELK3 2004 hgsc.bcm.edu hg19 12 96617510 96617510 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ELK3 NM_005230 exon2 c.T166C p.Y56H ATGAACTATGATA . 106.0 47.0 106.0 0.0 . 36 . . Atlas-SNP SCYL2 55681 hgsc.bcm.edu hg19 12 100708368 100708368 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SCYL2 NM_017988 exon8 c.A1071G p.P357P ACTGCCAAAGGTT . 486.0 195.0 578.0 0.0 . 99 . . Atlas-SNP PMCH 5367 hgsc.bcm.edu hg19 12 102591388 102591388 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PMCH NM_002674 exon1 c.C161T p.A54V TTTTCTGCAGTGT . 82.0 15.0 90.0 0.0 . 10 . . Atlas-SNP HCFC2 29915 hgsc.bcm.edu hg19 12 104476618 104476618 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HCFC2 NM_013320 exon7 c.T1002C p.D334D AAGAGATGGCTAC . 129.0 53.0 132.0 0.0 . 94 . . Atlas-SNP CMKLR1 1240 hgsc.bcm.edu hg19 12 108685651 108685651 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CMKLR1 NM_001142344 exon3 c.T1089C p.T363T CATAGAAGTCCTC . 116.0 49.0 137.0 0.0 . 67 . . Atlas-SNP RBM19 9904 hgsc.bcm.edu hg19 12 114397139 114397139 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBM19 NM_001146699 exon5 c.C449T p.A150V TCATTCGCCCAAG . 84.0 32.0 80.0 0.0 . 117 . . Atlas-SNP MED13L 23389 hgsc.bcm.edu hg19 12 116420407 116420407 + Missense_Mutation SNP C C T rs151181388 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MED13L NM_015335 exon22 c.G4957A p.V1653I CTGTAACACTGGA . 124.0 46.0 118.0 0.0 . 193 . C|1.000;T|0.000 Atlas-SNP SUDS3 64426 hgsc.bcm.edu hg19 12 118848915 118848915 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SUDS3 NM_022491 exon11 c.G841A p.D281N TCAAAGGACAACC . 71.0 21.0 63.0 0.0 . 26 . . Atlas-SNP CIT 11113 hgsc.bcm.edu hg19 12 120151400 120151400 + Missense_Mutation SNP C C T rs370080702 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CIT_ENST00000392521,colon,carcinoma,+1,1 CIT NM_001206999 exon34 c.G4360A p.G1454S GCAAGCCGCAGGT . 95.0 35.0 96.0 0.0 . 535 . . Atlas-SNP UNC119B 84747 hgsc.bcm.edu hg19 12 121157763 121157763 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UNC119B NM_001080533 exon5 c.C684A p.D228E CTCTGACAGCTTC . 91.0 40.0 77.0 0.0 . 21 . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122247883 122247883 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SETD1B NM_015048 exon5 c.C1032T p.A344A CACAGCCGCTTTC . 78.0 38.0 79.0 0.0 . 105 . . Atlas-SNP DIABLO 56616 hgsc.bcm.edu hg19 12 122693101 122693101 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DIABLO NM_019887 exon7 c.G547A p.A183T TCCTGGCGGTTAT . 46.0 22.0 42.0 0.0 . 16 . . Atlas-SNP GALNT9 50614 hgsc.bcm.edu hg19 12 132905784 132905784 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GALNT9 NM_001122636 exon1 c.G6A p.A2A GGCCACCGCCATG . 89.0 38.0 114.0 0.0 . 74 . . Atlas-SNP FBRSL1 57666 hgsc.bcm.edu hg19 12 133151138 133151138 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FBRSL1 NM_001142641 exon12 c.G1818A p.Q606Q TCACCAGCAGAAG . 65.0 24.0 85.0 0.0 . 47 . . Atlas-SNP MIPEP 4285 hgsc.bcm.edu hg19 13 24413824 24413824 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MIPEP NM_005932 exon12 c.C1302T p.Y434Y ATCACAGTAAATG . 56.0 38.0 91.0 0.0 . 53 . . Atlas-SNP MIPEP 4285 hgsc.bcm.edu hg19 13 24413861 24413861 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MIPEP NM_005932 exon12 c.T1265C p.V422A TGAACAACAGCCT . 41.0 25.0 63.0 0.0 . 53 . . Atlas-SNP SPATA13 221178 hgsc.bcm.edu hg19 13 24858385 24858385 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPATA13 NM_001166271 exon5 c.C2277T p.G759G GCCCGGCGGGGAG . 33.0 5.0 75.0 0.0 . 92 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35615180 35615180 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NBEA NM_015678 exon2 c.A405T p.E135D AGCAGAAATATGG . 54.0 45.0 123.0 0.0 . 340 . . Atlas-SNP ENOX1 55068 hgsc.bcm.edu hg19 13 43843689 43843689 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ENOX1 NM_017993 exon13 c.T1471G p.L491V TGTTTAACTCCTC . 32.0 26.0 72.0 0.0 . 158 . . Atlas-SNP PCDH9 5101 hgsc.bcm.edu hg19 13 67799558 67799558 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDH9 NM_203487 exon2 c.G3015T p.K1005N GGGGCCCTTTGTC . 177.0 82.0 157.0 0.0 . 252 . . Atlas-SNP DZIP1 22873 hgsc.bcm.edu hg19 13 96239850 96239850 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DZIP1 NM_198968 exon20 c.G2161A p.A721T CGTCCGCGTCACT . 107.0 43.0 102.0 0.0 . 195 . . Atlas-SNP DZIP1 22873 hgsc.bcm.edu hg19 13 96274617 96274617 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DZIP1 NM_014934 exon9 c.A1090G p.M364V GCTGCATGACATT . 86.0 18.0 66.0 0.0 . 195 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103384583 103384583 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001146197 exon4 c.C18464T p.P6155L GTGTGAGGTGAAC . 144.0 63.0 190.0 0.0 . . . . Atlas-SNP MCF2L 23263 hgsc.bcm.edu hg19 13 113718636 113718636 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MCF2L NM_001112732 exon6 c.G508A p.V170I AGCTCCGTACCAG . 62.0 16.0 78.0 0.0 . 182 . . Atlas-SNP RASA3 22821 hgsc.bcm.edu hg19 13 114784388 114784388 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RASA3 NM_007368 exon10 c.C793A p.L265I GCTGGAGGAAGTA . 102.0 49.0 117.0 0.0 . 83 . . Atlas-SNP TTC5 91875 hgsc.bcm.edu hg19 14 20757848 20757848 + Nonsense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TTC5 NM_138376 exon10 c.A1261T p.K421X GAGGCTTCCCATT . 78.0 28.0 89.0 0.0 . 34 . . Atlas-SNP RNASE7 84659 hgsc.bcm.edu hg19 14 21511475 21511475 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RNASE7 NM_032572 exon2 c.G324A p.M108I GACCATGTGTAAG . 92.0 42.0 103.0 0.0 . 18 . . Atlas-SNP ZNF219 51222 hgsc.bcm.edu hg19 14 21560611 21560611 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF219 NM_001102454 exon3 c.G845T p.S282I GTAAAGCTCTGGC . 87.0 34.0 99.0 0.0 . 28 . . Atlas-SNP OR4E2 26686 hgsc.bcm.edu hg19 14 22133945 22133945 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR4E2 NM_001001912 exon1 c.T649A p.S217T GTCACCTCCTATA . 187.0 9.0 153.0 0.0 . 44 . . Atlas-SNP MMP14 4323 hgsc.bcm.edu hg19 14 23315224 23315224 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MMP14 NM_004995 exon10 c.G1725A p.Q575Q CTGCCAGCGTTCC . 54.0 14.0 64.0 0.0 . 40 . . Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23652042 23652042 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC7A8 NM_012244 exon1 c.G82C p.G28R CGGAACCAGCCTC . 70.0 24.0 75.0 0.0 . 54 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23863388 23863388 + Silent SNP G G A rs148596692 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 MYH6,NS,adenoma,0,1 MYH6 NM_002471 exon21 c.C2574T p.F858F GCGCCCGAACTCT . 101.0 51.0 111.0 0.0 . 274 . G|1.000;A|0.000 Atlas-SNP CPNE6 9362 hgsc.bcm.edu hg19 14 24542179 24542179 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CPNE6 NM_006032 exon2 c.C34G p.P12A CCTGAGCCCCCAA . 63.0 23.0 51.0 0.0 . 40 . . Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24806911 24806911 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RIPK3 NM_006871 exon7 c.C890T p.A297V GAGACAGCAGCAT . 109.0 37.0 130.0 0.0 . 43 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24877520 24877520 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NYNRIN NM_025081 exon3 c.A644G p.H215R ACTCCCACTCCGA . 38.0 17.0 23.0 0.0 . 120 . . Atlas-SNP DTD2 112487 hgsc.bcm.edu hg19 14 31926576 31926576 + Silent SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_080664 exon1 c.T24G p.P8P GGCCTGAGGAATC . 220.0 88.0 223.0 0.0 . . . . Atlas-SNP PRPF39 55015 hgsc.bcm.edu hg19 14 45579384 45579384 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PRPF39 NM_017922 exon9 c.A1264G p.M422V AAACCCATGGTGC . 180.0 66.0 205.0 0.0 . 46 . . Atlas-SNP SOS2 6655 hgsc.bcm.edu hg19 14 50597348 50597348 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SOS2 NM_006939 exon20 c.C3208T p.R1070W CAATCCGACTAAA . 213.0 90.0 206.0 0.0 . 195 . . Atlas-SNP PTGER2 5732 hgsc.bcm.edu hg19 14 52781730 52781730 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTGER2 NM_000956 exon1 c.C464A p.A155D GCCTGGCCGTGCT . 54.0 26.0 61.0 0.0 . 27 . . Atlas-SNP KTN1 3895 hgsc.bcm.edu hg19 14 56094630 56094630 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KTN1 NM_004986 exon6 c.T964A p.S322T TTGCAGTCAAGTA . 144.0 56.0 142.0 0.0 . 147 . . Atlas-SNP TMEM260 0 hgsc.bcm.edu hg19 14 57051736 57051736 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_017799 exon2 c.G178A p.A60T ACAGCCGCACATG . 90.0 34.0 115.0 0.0 . . . . Atlas-SNP AP5M1 55745 hgsc.bcm.edu hg19 14 57747061 57747061 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_018229 exon3 c.A869G p.D290G TGGATGACTCTGC . 121.0 60.0 144.0 0.0 . . . . Atlas-SNP DACT1 51339 hgsc.bcm.edu hg19 14 59113492 59113492 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DACT1,NS,carcinoma,0,1 DACT1 NM_016651 exon4 c.C2151T p.Y717Y CCCCTACGCCTAC . 74.0 24.0 94.0 0.0 . 119 . . Atlas-SNP L3HYPDH 112849 hgsc.bcm.edu hg19 14 59950530 59950530 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_144581 exon1 c.A505G p.T169A TACCTGTGGCCAG . 31.0 16.0 40.0 0.0 . . . . Atlas-SNP MTHFD1 4522 hgsc.bcm.edu hg19 14 64921459 64921459 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MTHFD1 NM_005956 exon26 c.A2584C p.I862L CTCCCCATCTGCA . 106.0 26.0 101.0 0.0 . 61 . . Atlas-SNP PLEK2 26499 hgsc.bcm.edu hg19 14 67864501 67864501 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PLEK2 NM_016445 exon2 c.C85T p.R29W TCTGCCGAAGGAT . 108.0 47.0 118.0 0.0 . 23 . . Atlas-SNP MAP3K9 4293 hgsc.bcm.edu hg19 14 71199865 71199865 + Missense_Mutation SNP G G A rs145221753 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAP3K9 NM_033141 exon12 c.C2263T p.R755W CGCCCCGCTTGAG . 84.0 15.0 92.0 0.0 . 109 . G|1.000;A|0.000 Atlas-SNP ACOT4 122970 hgsc.bcm.edu hg19 14 74062092 74062092 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ACOT4 NM_152331 exon3 c.T1000C p.Y334H GAGTTGTATGCCC . 126.0 35.0 135.0 0.0 . 25 . . Atlas-SNP SYNDIG1L 646658 hgsc.bcm.edu hg19 14 74876101 74876101 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SYNDIG1L NM_001105579 exon2 c.C347T p.T116I TGGATGGTGACAT . 61.0 21.0 53.0 0.0 . 24 . . Atlas-SNP KIAA0317 9870 hgsc.bcm.edu hg19 14 75130470 75130470 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA0317 NM_001039479 exon20 c.C2425T p.L809L GCTGCAGCATCCT . 87.0 41.0 95.0 0.0 . 68 . . Atlas-SNP EIF2B2 8892 hgsc.bcm.edu hg19 14 75471454 75471454 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EIF2B2 NM_014239 exon4 c.A448G p.N150D ATGGAGAACATTG . 43.0 17.0 63.0 0.0 . 22 . . Atlas-SNP KIAA1737 85457 hgsc.bcm.edu hg19 14 77580248 77580248 + Missense_Mutation SNP G G A rs201665496 by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 KIAA1737,NS,carcinoma,0,1 KIAA1737 NM_033426 exon4 c.G787A p.A263T TCCCCCGCCAGTC . 81.0 32.0 73.0 0.0 . 26 . G|1.000;C|0.000 Atlas-SNP FLRT2 23768 hgsc.bcm.edu hg19 14 86088965 86088965 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FLRT2 NM_013231 exon2 c.C1107A p.L369L GCCTCTCTTCACC . 71.0 26.0 69.0 0.0 . 168 . . Atlas-SNP TTC7B 145567 hgsc.bcm.edu hg19 14 91155976 91155976 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TTC7B NM_001010854 exon7 c.G858A p.P286P CTGGCACGGTGGA . 131.0 65.0 114.0 0.0 . 93 . . Atlas-SNP CHGA 1113 hgsc.bcm.edu hg19 14 93397934 93397934 + Missense_Mutation SNP A A C rs71430778 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHGA NM_001275 exon6 c.A695C p.E232A AGGAGGAGGAGGA . 169.0 69.0 174.0 0.0 . 32 . A|0.500;T|0.500 Atlas-SNP BDKRB1 623 hgsc.bcm.edu hg19 14 96730967 96730967 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BDKRB1 NM_000710 exon3 c.C948T p.G316G TGTGGGCCGGCTC . 108.0 44.0 111.0 0.0 . 41 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96781801 96781801 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATG2B NM_018036 exon22 c.G3481A p.D1161N CTCCATCTGAAGA . 377.0 26.0 366.0 0.0 . 169 . . Atlas-SNP C14orf177 283598 hgsc.bcm.edu hg19 14 99183450 99183450 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C14orf177 NM_182560 exon4 c.T217C p.F73L ACCTGTTTCTGTA . 81.0 29.0 92.0 0.0 . 37 . . Atlas-SNP SETD3 84193 hgsc.bcm.edu hg19 14 99929899 99929899 + Silent SNP C C T rs146095518 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SETD3 NM_032233 exon3 c.G120A p.A40A GCCAGGCGCCGGA . 36.0 14.0 46.0 0.0 . 56 . C|1.000;T|0.000 Atlas-SNP WDR20 91833 hgsc.bcm.edu hg19 14 102675272 102675272 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WDR20 NM_001242417 exon4 c.C858T p.H286H GCTGCACGGTACG . 113.0 7.0 107.0 0.0 . 35 . . Atlas-SNP INF2 64423 hgsc.bcm.edu hg19 14 105168020 105168020 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . INF2 NM_022489 exon2 c.C318T p.R106R CGTGCGCGCCGTC . 54.0 13.0 66.0 0.0 . 148 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105414171 105414171 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AHNAK2 NM_138420 exon7 c.C7617A p.D2539E CTCCAGGTCAGCG . 170.0 11.0 217.0 0.0 . 719 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105414174 105414174 + Silent SNP A A G rs374363751 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AHNAK2 NM_138420 exon7 c.T7614C p.A2538A CAGGTCAGCGGAA . 165.0 11.0 227.0 0.0 . 719 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105414177 105414177 + Silent SNP G G A rs368398841 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AHNAK2 NM_138420 exon7 c.C7611T p.S2537S GTCAGCGGAAGGG . 173.0 11.0 225.0 0.0 . 719 . . Atlas-SNP CYFIP1 23191 hgsc.bcm.edu hg19 15 23003033 23003033 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CYFIP1 NM_014608 exon31 c.G3755A p.S1252N TCGCCAGCAGCTG . 95.0 41.0 120.0 0.0 . 159 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24921255 24921255 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_018958 exon1 c.C241T p.P81S GCCGCCCCTCTGG . 97.0 42.0 109.0 0.0 . . . . Atlas-SNP APBA2 321 hgsc.bcm.edu hg19 15 29406202 29406202 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . APBA2 NM_005503 exon13 c.T2161A p.S721T GCTCTGTCCAACT . 87.0 37.0 94.0 0.0 . 132 . . Atlas-SNP ARHGAP11A 9824 hgsc.bcm.edu hg19 15 32908462 32908462 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGAP11A NM_199357 exon1 c.C50T p.A17V TGCGGGCCTTCTA . 202.0 76.0 192.0 0.0 . 84 . . Atlas-SNP GJD2 57369 hgsc.bcm.edu hg19 15 35044813 35044813 + Missense_Mutation SNP G G A rs113904860 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 GJD2,NS,carcinoma,+1,1 GJD2 NM_020660 exon2 c.C832T p.R278C TCTTGCGCCATCC . 152.0 61.0 164.0 0.0 . 49 . . Atlas-SNP THBS1 7057 hgsc.bcm.edu hg19 15 39874935 39874935 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . THBS1 NM_003246 exon3 c.C609T p.G203G GGGGGGCGTCAAT . 33.0 13.0 35.0 0.0 . 106 . . Atlas-SNP THBS1 7057 hgsc.bcm.edu hg19 15 39881519 39881519 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . THBS1 NM_003246 exon12 c.C1890T p.F630F GCCCTTCGGCCAG . 91.0 34.0 92.0 0.0 . 106 . . Atlas-SNP THBS1 7057 hgsc.bcm.edu hg19 15 39885371 39885371 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . THBS1 NM_003246 exon18 c.C2938T p.R980C GTTGTACGCCATC . 89.0 39.0 102.0 0.0 . 106 . . Atlas-SNP DISP2 85455 hgsc.bcm.edu hg19 15 40660890 40660890 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DISP2 NM_033510 exon8 c.C2577T p.C859C CTGCTGCGGCCAC . 75.0 27.0 85.0 0.0 . 86 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41804450 41804450 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LTK NM_001135685 exon4 c.G373A p.G125R CGGCTCCGTAGGC . 243.0 90.0 223.0 0.0 . 117 . . Atlas-SNP TGM5 9333 hgsc.bcm.edu hg19 15 43545733 43545733 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TGM5 NM_201631 exon5 c.G655A p.V219I CGTAGACGGGGCT . 46.0 15.0 50.0 0.0 . 88 . . Atlas-SNP TUBGCP4 27229 hgsc.bcm.edu hg19 15 43668752 43668752 + Missense_Mutation SNP C C T rs200951264 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TUBGCP4 NM_014444 exon3 c.C259T p.R87W TACCTGCGGGCCT . 118.0 42.0 140.0 0.0 . 48 . C|0.999;A|0.001 Atlas-SNP MAP1A 4130 hgsc.bcm.edu hg19 15 43820753 43820753 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAP1A NM_002373 exon4 c.G7082A p.G2361D CCAATGGCCCAAC . 69.0 28.0 73.0 0.0 . 189 . . Atlas-SNP DUOXA1 90527 hgsc.bcm.edu hg19 15 45413420 45413420 + Splice_Site SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DUOXA1 NM_001276264 exon7 c.206-1G>A . TCACAGCTGTGGT . 131.0 24.0 148.0 0.0 . 32 . . Atlas-SNP SPATA5L1 79029 hgsc.bcm.edu hg19 15 45695622 45695622 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPATA5L1 NM_024063 exon1 c.C995A p.A332D ACGGCGCCAGTGG . 127.0 63.0 121.0 0.0 . 40 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49030737 49030737 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CEP152 NM_001194998 exon27 c.C4842T p.S1614S ATAACCGGATGGT . 122.0 38.0 102.0 0.0 . 145 . . Atlas-SNP GALK2 2585 hgsc.bcm.edu hg19 15 49584596 49584596 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GALK2 NM_002044 exon8 c.A829T p.I277F CTAGGGATTAGTC . 128.0 44.0 121.0 0.0 . 78 . . Atlas-SNP ATP8B4 79895 hgsc.bcm.edu hg19 15 50331023 50331023 + Missense_Mutation SNP G G A rs372854928 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATP8B4 NM_024837 exon6 c.C304T p.R102C TGTGGCGAAACTG . 94.0 28.0 141.0 0.0 . 173 . . Atlas-SNP TRPM7 54822 hgsc.bcm.edu hg19 15 50884115 50884115 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRPM7 NM_017672 exon26 c.A4317G p.A1439A TACAAATGCTCCA . 94.0 4.0 112.0 0.0 . 145 . . Atlas-SNP ADAM10 102 hgsc.bcm.edu hg19 15 58936169 58936169 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADAM10 NM_001110 exon7 c.T744C p.S248S AACATGACTGGAT . 110.0 5.0 100.0 0.0 . 59 . . Atlas-SNP SLTM 79811 hgsc.bcm.edu hg19 15 59175873 59175873 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLTM NM_024755 exon20 c.G2948A p.R983Q CCCATTCGCCTCG . 131.0 58.0 133.0 0.0 . 90 . . Atlas-SNP C2CD4B 388125 hgsc.bcm.edu hg19 15 62456187 62456187 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C2CD4B NM_001007595 exon2 c.G997A p.A333T GAACGGCCAGGCG . 70.0 28.0 69.0 0.0 . 4 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu hg19 15 63009820 63009820 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TLN2 NM_015059 exon21 c.G2809A p.A937T ATCGCCGCCTCCC . 224.0 81.0 236.0 0.0 . 253 . . Atlas-SNP PIF1 80119 hgsc.bcm.edu hg19 15 65111379 65111379 + Silent SNP C C T rs374363106 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PIF1 NM_025049 exon9 c.G1377A p.L459L ACTGGCCAGCTCA . 210.0 91.0 221.0 0.0 . 43 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72338646 72338646 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYO9A NM_006901 exon2 c.A259T p.M87L ACAGCATCATTCG . 108.0 45.0 95.0 0.0 . 203 . . Atlas-SNP ISLR2 57611 hgsc.bcm.edu hg19 15 74426101 74426101 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ISLR2,NS,carcinoma,0,1 ISLR2 NM_001130138 exon4 c.G1006A p.A336T GCCCTCGCAAATG . 113.0 47.0 122.0 0.0 . 78 . . Atlas-SNP EDC3 80153 hgsc.bcm.edu hg19 15 74932931 74932931 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EDC3 NM_001142444 exon6 c.T850C p.Y284H GCTCATAGGAAAT . 114.0 43.0 112.0 0.0 . 32 . . Atlas-SNP PEAK1 0 hgsc.bcm.edu hg19 15 77471265 77471265 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_024776 exon5 c.G3004A p.V1002M GATCCACACTGAG . 76.0 29.0 55.0 0.0 . . . . Atlas-SNP AP3B2 8120 hgsc.bcm.edu hg19 15 83350208 83350208 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AP3B2 NM_004644 exon5 c.G485A p.R162Q GTTTTCCGCACAT . 80.0 38.0 76.0 0.0 . 103 . . Atlas-SNP ALPK3 57538 hgsc.bcm.edu hg19 15 85403072 85403072 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ALPK3 NM_020778 exon8 c.A4637G p.Y1546C GTGTGTATCGGTG . 82.0 31.0 95.0 0.0 . 289 . . Atlas-SNP MFGE8 4240 hgsc.bcm.edu hg19 15 89449105 89449105 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MFGE8 NM_001114614 exon5 c.G568A p.A190T GCACCGCGTTTTT . 140.0 56.0 163.0 0.0 . 60 . . Atlas-SNP ABHD2 11057 hgsc.bcm.edu hg19 15 89698708 89698708 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABHD2 NM_007011 exon9 c.A481G p.N161D GTGCTGAACCACC . 136.0 68.0 143.0 0.0 . 55 . . Atlas-SNP MESP2 145873 hgsc.bcm.edu hg19 15 90320134 90320134 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 MESP2,NS,carcinoma,0,1 MESP2 NM_001039958 exon1 c.A546G p.Q182Q GGGGCAAGGGCAG . 20.0 4.0 50.0 1.0 . 20 . . Atlas-SNP ASB7 140460 hgsc.bcm.edu hg19 15 101152549 101152549 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ASB7 NM_024708 exon4 c.G128A p.R43Q ATGGCCGAGATGC . 177.0 76.0 149.0 0.0 . 32 . . Atlas-SNP SOLH 6650 hgsc.bcm.edu hg19 16 599385 599385 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SOLH NM_005632 exon6 c.C1756T p.R586W CAGGTGCGGCTGT . 56.0 13.0 50.0 0.0 . 47 . . Atlas-SNP SOX8 30812 hgsc.bcm.edu hg19 16 1033875 1033875 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SOX8 NM_014587 exon2 c.G570A p.A190A GGGCGCGGAGCTG . 209.0 94.0 225.0 0.0 . 29 . . Atlas-SNP UNKL 64718 hgsc.bcm.edu hg19 16 1464671 1464671 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UNKL NM_001193388 exon1 c.G22C p.A8P CTGCCGCCGCTTT . 81.0 33.0 62.0 0.0 . 46 . . Atlas-SNP NTHL1 4913 hgsc.bcm.edu hg19 16 2093714 2093714 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NTHL1 NM_002528 exon4 c.A563G p.Y188C TTGATGTATTTCA . 35.0 15.0 46.0 0.0 . 24 . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2818134 2818134 + Silent SNP G G C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SRRM2,bladder,carcinoma,+1,1 SRRM2 NM_016333 exon11 c.G7605C p.S2535S CTCCTCGTCGTCG . 60.0 16.0 43.0 0.0 . 263 . . Atlas-SNP MEFV 4210 hgsc.bcm.edu hg19 16 3293875 3293875 + Missense_Mutation SNP C C T rs375665850 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MEFV NM_000243 exon9 c.G1777A p.A593T CCTGAGCGCCAAT . 194.0 72.0 216.0 0.0 . 170 . . Atlas-SNP TRAP1 10131 hgsc.bcm.edu hg19 16 3712966 3712966 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 TRAP1,colon,carcinoma,0,1 TRAP1 NM_016292 exon15 c.G1711A p.A571T ACTCGGCGGCTGC . 25.0 8.0 16.0 0.0 . 53 . . Atlas-SNP GSPT1 2935 hgsc.bcm.edu hg19 16 11981478 11981478 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GSPT1 NM_002094 exon7 c.T906C p.S302S GACAAAACTCTTG . 190.0 78.0 212.0 0.0 . 71 . . Atlas-SNP ERCC4 2072 hgsc.bcm.edu hg19 16 14041629 14041629 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ERCC4 NM_005236 exon11 c.C2176T p.R726C GTGGAGCGCAAGA . 106.0 34.0 93.0 0.0 . 100 . . Atlas-SNP PARN 5073 hgsc.bcm.edu hg19 16 14721031 14721031 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PARN NM_002582 exon5 c.T259G p.S87A TAAATGACTTCGT . 164.0 61.0 142.0 0.0 . 72 . . Atlas-SNP NTAN1 123803 hgsc.bcm.edu hg19 16 15131931 15131931 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 NTAN1 NM_173474 exon10 c.A890C p.N297T TCTTCATTTTTTT . 126.0 10.0 145.0 0.0 . 21 . . Atlas-SNP ABCC1 4363 hgsc.bcm.edu hg19 16 16177388 16177388 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABCC1 NM_004996 exon17 c.A2281T p.I761F ACAGAGATTGGCG . 131.0 27.0 161.0 0.0 . 156 . . Atlas-SNP OTOA 146183 hgsc.bcm.edu hg19 16 21702950 21702950 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OTOA NM_144672 exon8 c.C681T p.S227S TCATTCCCAGAGA . 117.0 20.0 86.0 0.0 . 144 . . Atlas-SNP OTOA 146183 hgsc.bcm.edu hg19 16 21702955 21702955 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OTOA NM_144672 exon8 c.G686A p.R229K CCCAGAGAGCTCT . 121.0 21.0 86.0 0.0 . 144 . . Atlas-SNP OTOA 146183 hgsc.bcm.edu hg19 16 21721362 21721362 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OTOA NM_144672 exon12 c.G1258A p.V420I AACCAGGTCTCAG . 151.0 49.0 120.0 0.0 . 144 . . Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27752080 27752080 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA0556 NM_015202 exon15 c.A2462G p.N821S GTGTCAACACCAA . 143.0 53.0 133.0 0.0 . 348 . . Atlas-SNP MVP 9961 hgsc.bcm.edu hg19 16 29848108 29848108 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MVP NM_017458 exon7 c.G738A p.G246G CACTGGGGAGGAG . 119.0 45.0 106.0 0.0 . 80 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30727435 30727435 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SRCAP NM_006662 exon17 c.C2542T p.Q848X GAGAAGCAGATGC . 87.0 29.0 95.0 0.0 . 298 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30734920 30734920 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SRCAP NM_006662 exon25 c.C4175A p.A1392D CCGGAGCTGCCCC . 82.0 30.0 73.0 0.0 . 298 . . Atlas-SNP STX1B 112755 hgsc.bcm.edu hg19 16 31008338 31008338 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STX1B NM_052874 exon6 c.T397A p.Y133N CGTTATATTCGGT . 74.0 25.0 64.0 0.0 . 26 . . Atlas-SNP FUS 2521 hgsc.bcm.edu hg19 16 31196408 31196408 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FUS NM_004960 exon6 c.C672T p.G224G TGGCGGCGGCGGC . 73.0 29.0 72.0 0.0 . 52 . . Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51173443 51173443 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SALL1 NM_002968 exon2 c.T2690C p.V897A GTCAGGACATCCC . 110.0 49.0 82.0 0.0 . 301 . . Atlas-SNP CPNE2 221184 hgsc.bcm.edu hg19 16 57144691 57144691 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CPNE2 NM_152727 exon2 c.G37A p.G13R GCAGCGGGGGCAG . 124.0 50.0 156.0 0.0 . 48 . . Atlas-SNP KIFC3 3801 hgsc.bcm.edu hg19 16 57794959 57794959 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIFC3 NM_001130100 exon15 c.C1997T p.T666I CCCGTGGTGCGGA . 29.0 11.0 40.0 0.0 . 55 . . Atlas-SNP CNGB1 1258 hgsc.bcm.edu hg19 16 57937813 57937813 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CNGB1 NM_001297 exon27 c.T2707C p.Y903H TCATGTACTTCAC . 72.0 30.0 71.0 0.0 . 105 . . Atlas-SNP B3GNT9 84752 hgsc.bcm.edu hg19 16 67184217 67184217 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . B3GNT9 NM_033309 exon2 c.T172C p.L58L CGGGTAACTGGAA . 108.0 39.0 138.0 0.0 . 25 . . Atlas-SNP RLTPR 146206 hgsc.bcm.edu hg19 16 67683180 67683180 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RLTPR NM_001013838 exon19 c.A1712G p.H571R TCCTGCACCGGAT . 48.0 19.0 59.0 0.0 . 124 . . Atlas-SNP RANBP10 57610 hgsc.bcm.edu hg19 16 67765413 67765413 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 RANBP10,NS,lymphoid_neoplasm,0,1 RANBP10 NM_020850 exon7 c.C851T p.P284L TGAATCGGGGTTT . 117.0 49.0 169.0 0.0 . 56 . . Atlas-SNP PSKH1 5681 hgsc.bcm.edu hg19 16 67943147 67943147 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PSKH1 NM_006742 exon2 c.G495T p.Q165H GACACAGGAGCGG . 115.0 37.0 129.0 0.0 . 28 . . Atlas-SNP TERF2 7014 hgsc.bcm.edu hg19 16 69418537 69418537 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TERF2 NM_005652 exon3 c.A552T p.E184D TGTAAATTCCGTT . 98.0 39.0 91.0 0.0 . 24 . . Atlas-SNP MTSS1L 92154 hgsc.bcm.edu hg19 16 70708260 70708260 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MTSS1L NM_138383 exon11 c.C1002T p.D334D GGTGGCGTCCTGG . 102.0 42.0 123.0 0.0 . 22 . . Atlas-SNP ZNF19 7567 hgsc.bcm.edu hg19 16 71509598 71509598 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF19 NM_006961 exon6 c.T852C p.G284G TGAATTACCAACA . 111.0 45.0 110.0 0.0 . 46 . . Atlas-SNP PMFBP1 83449 hgsc.bcm.edu hg19 16 72157448 72157448 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PMFBP1 NM_031293 exon18 c.A2690G p.Q897R CACTTCTGCTGTT . 99.0 32.0 81.0 0.0 . 101 . . Atlas-SNP ZNRF1 84937 hgsc.bcm.edu hg19 16 75033861 75033861 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNRF1 NM_032268 exon1 c.G292A p.A98T ACCTATGCCCATG . 74.0 21.0 93.0 0.0 . 6 . . Atlas-SNP GAN 8139 hgsc.bcm.edu hg19 16 81411036 81411036 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GAN NM_022041 exon11 c.C1629T p.Y543Y CGACTACGTGCGT . 136.0 11.0 113.0 0.0 . 59 . . Atlas-SNP CTU2 348180 hgsc.bcm.edu hg19 16 88779224 88779224 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CTU2 NM_001012759 exon7 c.G648A p.P216P AAGACCGCCTGCC . 120.0 44.0 128.0 0.0 . 66 . . Atlas-SNP PIEZO1 9780 hgsc.bcm.edu hg19 16 88793275 88793275 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PIEZO1 NM_001142864 exon25 c.A3547G p.S1183G AGATGCTGATGCG . 175.0 52.0 163.0 0.0 . 79 . . Atlas-SNP ZNF276 92822 hgsc.bcm.edu hg19 16 89804261 89804261 + Missense_Mutation SNP C C T rs149209309 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF276 NM_001113525 exon10 c.C1522T p.R508W AAGCAGCGGAAGC . 166.0 7.0 156.0 0.0 . 70 . C|1.000;G|0.000 Atlas-SNP CENPBD1 92806 hgsc.bcm.edu hg19 16 90037950 90037950 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CENPBD1 NM_145039 exon1 c.C381T p.G127G ACCTTCGCCATGT . 188.0 67.0 215.0 0.0 . 18 . . Atlas-SNP SRR 63826 hgsc.bcm.edu hg19 17 2227123 2227123 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SRR NM_021947 exon8 c.A979G p.K327E TGGGTGAAGCAGG . 67.0 6.0 99.0 0.0 . 21 . . Atlas-SNP RAP1GAP2 23108 hgsc.bcm.edu hg19 17 2911342 2911342 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RAP1GAP2 NM_015085 exon17 c.A1397G p.D466G TTCACGATGAGCT . 52.0 42.0 116.0 0.0 . 90 . . Atlas-SNP OR1A1 8383 hgsc.bcm.edu hg19 17 3119841 3119841 + Silent SNP G G A rs142898585 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR1A1 NM_014565 exon1 c.G927A p.S309S CTCCTCGTAACCA . 28.0 18.0 72.0 0.0 . 54 . G|1.000;A|0.000 Atlas-SNP TM4SF5 9032 hgsc.bcm.edu hg19 17 4686302 4686302 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TM4SF5 NM_003963 exon4 c.T549C p.G183G CATTGGTGTCTTC . 95.0 28.0 197.0 0.0 . 26 . . Atlas-SNP DVL2 1856 hgsc.bcm.edu hg19 17 7130768 7130768 + Missense_Mutation SNP G G A rs372746877 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DVL2 NM_004422 exon12 c.C1318T p.R440W GGTCCCGGACTTC . 51.0 39.0 105.0 0.0 . 49 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7667529 7667529 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAH2 NM_020877 exon19 c.A3274T p.I1092F ACTCAGATCCCTC . 219.0 149.0 408.0 0.0 . 498 . . Atlas-SNP C17orf59 54785 hgsc.bcm.edu hg19 17 8092992 8092992 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C17orf59 NM_017622 exon1 c.G467A p.G156D GAGCGGCCGGCTC . 23.0 10.0 30.0 0.0 . 19 . . Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10408257 10408257 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYH1 NM_005963 exon22 c.C2561T p.A854V ATGTTGGCCATCT . 166.0 43.0 114.0 0.0 . 403 . . Atlas-SNP ELAC2 60528 hgsc.bcm.edu hg19 17 12906873 12906873 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ELAC2 NM_173717 exon12 c.T1002C p.D334D GGGGGCATCTGCC . 65.0 23.0 59.0 0.0 . 48 . . Atlas-SNP ELAC2 60528 hgsc.bcm.edu hg19 17 12919138 12919138 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ELAC2 NM_001165962 exon4 c.A379G p.T127A TTAAAGTAAGAAT . 132.0 17.0 123.0 0.0 . 48 . . Atlas-SNP ELAC2 60528 hgsc.bcm.edu hg19 17 12921261 12921261 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ELAC2 NM_001165962 exon1 c.T4C p.W2R GCGCCCACATGCG . 46.0 8.0 72.0 0.0 . 48 . . Atlas-SNP LLGL1 3996 hgsc.bcm.edu hg19 17 18138832 18138832 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LLGL1 NM_004140 exon11 c.C1333T p.R445X TCACAGCGAGGGC . 83.0 34.0 55.0 0.0 . 61 . . Atlas-SNP MAPK7 5598 hgsc.bcm.edu hg19 17 19284128 19284128 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAPK7 NM_002749 exon4 c.T606C p.G202G CTTTGGTATGGCT . 128.0 61.0 108.0 0.0 . 72 . . Atlas-SNP C17orf51 339263 hgsc.bcm.edu hg19 17 21438727 21438727 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C17orf51 NM_001113434 exon2 c.C500A p.A167D TCTGGGGCACTTC . 54.0 23.0 67.0 0.0 . 24 . . Atlas-SNP NOS2 4843 hgsc.bcm.edu hg19 17 26096024 26096024 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NOS2 NM_000625 exon17 c.C2013A p.S671R GGCCCAGCTGCGG . 34.0 15.0 27.0 0.0 . 113 . . Atlas-SNP SLC46A1 113235 hgsc.bcm.edu hg19 17 26731651 26731651 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC46A1 NM_001242366 exon2 c.C1064T p.T355M AGAGGCGTGATAG . 99.0 45.0 96.0 0.0 . 17 . . Atlas-SNP SLC46A1 113235 hgsc.bcm.edu hg19 17 26732401 26732401 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC46A1 NM_001242366 exon2 c.G314A p.G105E CAAGCTCCCAGCA . 182.0 72.0 180.0 0.0 . 17 . . Atlas-SNP NEK8 284086 hgsc.bcm.edu hg19 17 27061037 27061037 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NEK8 NM_178170 exon2 c.G84T p.K28N CCAGAAGCTGGTG . 90.0 24.0 89.0 0.0 . 76 . . Atlas-SNP EFCAB5 374786 hgsc.bcm.edu hg19 17 28419089 28419089 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 EFCAB5,NS,carcinoma,0,1 EFCAB5 NM_198529 exon21 c.C4138T p.R1380C CTAGTGCGTGACA . 143.0 43.0 163.0 0.0 . 122 . . Atlas-SNP PSMD11 5717 hgsc.bcm.edu hg19 17 30806365 30806365 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PSMD11 NM_002815 exon10 c.C1009T p.R337X CTGATCCGAGTCA . 93.0 36.0 136.0 0.0 . 41 . . Atlas-SNP LIG3 3980 hgsc.bcm.edu hg19 17 33325644 33325644 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LIG3 NM_013975 exon14 c.C2011T p.R671W GGGAAGCGGCACT . 83.0 33.0 84.0 0.0 . 164 . . Atlas-SNP LIG3 3980 hgsc.bcm.edu hg19 17 33329755 33329755 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LIG3 NM_013975 exon19 c.G2743T p.V915L TCTCCAGTGAAAG . 224.0 89.0 234.0 0.0 . 164 . . Atlas-SNP CCL15 6359 hgsc.bcm.edu hg19 17 34324830 34324830 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCL15 NM_032965 exon4 c.G315A p.M105I CTTTTTCATGCAA . 103.0 7.0 76.0 0.0 . 15 . . Atlas-SNP AATF 26574 hgsc.bcm.edu hg19 17 35310201 35310201 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AATF NM_012138 exon3 c.A299G p.D100G TATCTGATGAGGA . 165.0 55.0 156.0 0.0 . 36 . . Atlas-SNP AATF 26574 hgsc.bcm.edu hg19 17 35346611 35346611 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AATF NM_012138 exon7 c.A1215T p.R405S AGAGAGATTACTT . 73.0 25.0 89.0 0.0 . 36 . . Atlas-SNP ACACA 31 hgsc.bcm.edu hg19 17 35620662 35620662 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ACACA_ENST00000353139,NS,malignant_melanoma,0,2 ACACA NM_198834 exon11 c.C1255T p.R419C GCCTGCGTTGTAC . 142.0 62.0 123.0 0.0 . 395 . . Atlas-SNP MED1 5469 hgsc.bcm.edu hg19 17 37584012 37584012 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MED1 NM_004774 exon10 c.T681C p.S227S AGAAGGAGAGACA . 96.0 36.0 88.0 0.0 . 123 . . Atlas-SNP MED24 9862 hgsc.bcm.edu hg19 17 38183700 38183700 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 MED24,NS,carcinoma,0,1 MED24 NM_014815 exon16 c.G1466A p.R489Q AGGGCCCGGACGG . 112.0 53.0 167.0 0.0 . 89 . . Atlas-SNP KRT20 54474 hgsc.bcm.edu hg19 17 39034421 39034421 + Missense_Mutation SNP C C T rs377652428 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KRT20 NM_019010 exon6 c.G1115A p.R372H AGAAGGCGGCGGT . 90.0 39.0 97.0 0.0 . 38 . . Atlas-SNP KRT20 54474 hgsc.bcm.edu hg19 17 39041125 39041125 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KRT20 NM_019010 exon1 c.T313G p.W105G CGTACCACTGCTT . 122.0 6.0 117.0 0.0 . 38 . . Atlas-SNP KRT31 3881 hgsc.bcm.edu hg19 17 39551555 39551555 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KRT31 NM_002277 exon5 c.T818A p.I273N AGCTCGATGATCT . 105.0 42.0 107.0 0.0 . 158 . . Atlas-SNP NT5C3B 115024 hgsc.bcm.edu hg19 17 39983842 39983842 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_052935 exon8 c.A604G p.T202A TGTATGTGTGTAT . 184.0 60.0 209.0 0.0 . . . . Atlas-SNP DHX58 79132 hgsc.bcm.edu hg19 17 40263791 40263791 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DHX58 NM_024119 exon3 c.G120T p.R40R TAGGTGCCGCTTG . 108.0 29.0 87.0 0.0 . 39 . . Atlas-SNP VPS25 84313 hgsc.bcm.edu hg19 17 40928326 40928326 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VPS25 NM_032353 exon5 c.A406G p.T136A GAAGACACAGAGG . 145.0 52.0 153.0 0.0 . 11 . . Atlas-SNP MPP3 4356 hgsc.bcm.edu hg19 17 41907454 41907454 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MPP3 NM_001932 exon6 c.G244A p.A82T CGGAGGCGGCCTG . 47.0 25.0 37.0 0.0 . 42 . . Atlas-SNP TMEM101 84336 hgsc.bcm.edu hg19 17 42089395 42089395 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM101 NM_032376 exon4 c.G675T p.W225C GTTGTGCCAGTAA . 88.0 40.0 81.0 0.0 . 18 . . Atlas-SNP HDAC5 10014 hgsc.bcm.edu hg19 17 42171119 42171119 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 HDAC5,NS,carcinoma,0,1 HDAC5 NM_001015053 exon4 c.C181T p.R61W CCCCCCGTAGCTC . 143.0 58.0 118.0 0.0 . 67 . . Atlas-SNP NMT1 4836 hgsc.bcm.edu hg19 17 43171104 43171104 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NMT1 NM_021079 exon4 c.G437A p.R146H ATATCCGCCAGGA . 71.0 26.0 66.0 0.0 . 31 . . Atlas-SNP KANSL1 284058 hgsc.bcm.edu hg19 17 44108889 44108889 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 KIAA1267,face,carcinoma,0,1 . NM_001193466 exon15 c.C3271T p.R1091W GATGCCGACTCTT . 88.0 30.0 98.0 0.0 . . . . Atlas-SNP ITGB3 3690 hgsc.bcm.edu hg19 17 45363766 45363766 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ITGB3 NM_000212 exon5 c.T755C p.I252T ATGCCATCATGCA . 88.0 32.0 79.0 0.0 . 157 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45895948 45895948 + Missense_Mutation SNP G G A rs368110786 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OSBPL7 NM_145798 exon6 c.C404T p.A135V AGCTGCGCCACCC . 81.0 36.0 72.0 0.0 . 65 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45896429 45896429 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OSBPL7 NM_145798 exon5 c.C292T p.R98W ACAGCCGGACATC . 102.0 35.0 110.0 0.0 . 65 . . Atlas-SNP HOXB7 3217 hgsc.bcm.edu hg19 17 46687954 46687954 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HOXB7 NM_004502 exon1 c.C327T p.G109G CTTGGCGCCCGCC . 199.0 83.0 198.0 0.0 . 15 . . Atlas-SNP HOXB13 10481 hgsc.bcm.edu hg19 17 46805444 46805444 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HOXB13 NM_006361 exon1 c.C512A p.S171Y GCCCAAGACTGGT . 146.0 71.0 112.0 0.0 . 28 . . Atlas-SNP ZNF652 22834 hgsc.bcm.edu hg19 17 47389292 47389292 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ZNF652,colon,carcinoma,0,1 ZNF652 NM_001145365 exon4 c.C1161T p.C387C TACCTCGCATCTA . 116.0 31.0 121.0 0.0 . 54 . . Atlas-SNP SAMD14 201191 hgsc.bcm.edu hg19 17 48191303 48191303 + Silent SNP G G A rs367685385 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SAMD14 NM_174920 exon10 c.C1167T p.D389D GCTTCCGTCCAGC . 167.0 79.0 154.0 0.0 . 36 . . Atlas-SNP EME1 146956 hgsc.bcm.edu hg19 17 48452870 48452870 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EME1 NM_152463 exon2 c.A301G p.T101A AGGCTTACATGTA . 156.0 71.0 180.0 0.0 . 39 . . Atlas-SNP NME1 4830 hgsc.bcm.edu hg19 17 49233116 49233116 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NME1 NM_198175 exon3 c.G176A p.R59H GATTCCGCCTTGT . 139.0 32.0 138.0 0.0 . 12 . . Atlas-SNP PPM1D 8493 hgsc.bcm.edu hg19 17 58740416 58740416 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PPM1D,colon,carcinoma,0,1 PPM1D NM_003620 exon6 c.C1321T p.R441C CTGGTTCGTAGCA . 160.0 65.0 148.0 0.0 . 50 . . Atlas-SNP CD79B 974 hgsc.bcm.edu hg19 17 62007735 62007735 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CD79B NM_001039933 exon3 c.T132C p.C44C CCGCGAACAAGCA . 81.0 28.0 62.0 0.0 . 38 . . Atlas-SNP BPTF 2186 hgsc.bcm.edu hg19 17 65862621 65862621 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BPTF NM_004459 exon3 c.A1478G p.Y493C TTTGGTATTACAG . 152.0 71.0 175.0 0.0 . 415 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 66972304 66972304 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABCA9 NM_080283 exon38 c.A4748G p.Y1583C AGGCTGTACTCCT . 217.0 59.0 197.0 0.0 . 192 . . Atlas-SNP GRIN2C 2905 hgsc.bcm.edu hg19 17 72840513 72840513 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GRIN2C NM_000835 exon12 c.G2485A p.A829T GCAGGGCCAGCCC . 133.0 52.0 135.0 0.0 . 144 . . Atlas-SNP KIAA0195 9772 hgsc.bcm.edu hg19 17 73490855 73490855 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA0195 NM_014738 exon19 c.T2555C p.V852A GCTTTGTCTACTT . 127.0 46.0 116.0 0.0 . 102 . . Atlas-SNP GALK1 2584 hgsc.bcm.edu hg19 17 73754367 73754367 + Missense_Mutation SNP G G A rs371517491 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GALK1 NM_000154 exon7 c.C1031T p.T344M CCGCCCGTCATGC . 94.0 32.0 90.0 0.0 . 17 . . Atlas-SNP FBF1 85302 hgsc.bcm.edu hg19 17 73910972 73910972 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FBF1 NM_001080542 exon24 c.C2625T p.C875C CTCCCCGCACTTG . 81.0 28.0 75.0 0.0 . 48 . . Atlas-SNP GALR2 8811 hgsc.bcm.edu hg19 17 74072920 74072920 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GALR2 NM_003857 exon2 c.C572A p.T191N TCTGCACCTTCGT . 52.0 21.0 51.0 0.0 . 17 . . Atlas-SNP ENGASE 64772 hgsc.bcm.edu hg19 17 77081342 77081342 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ENGASE NM_001042573 exon12 c.C1618T p.R540X AGCCTCCGACCCC . 262.0 198.0 502.0 1.0 . 55 . . Atlas-SNP ANAPC11 51529 hgsc.bcm.edu hg19 17 79857927 79857927 + Nonsense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANAPC11 NM_001002247 exon3 c.A241T p.K81X GAATGGAAGTTCA . 50.0 34.0 97.0 0.0 . 1 . . Atlas-SNP ENOSF1 55556 hgsc.bcm.edu hg19 18 675343 675343 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ENOSF1 NM_202758 exon14 c.G1229A p.R410Q GAAGCCCGCTGGA . 126.0 57.0 103.0 0.0 . 44 . . Atlas-SNP CHMP1B 57132 hgsc.bcm.edu hg19 18 11851635 11851635 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHMP1B NM_020412 exon1 c.A125C p.K42T TTCAGAAGGGCAA . 107.0 6.0 91.0 0.0 . 16 . . Atlas-SNP ROCK1 6093 hgsc.bcm.edu hg19 18 18625320 18625320 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ROCK1 NM_005406 exon5 c.G523A p.A175T ATCGTGCCCATTT . 69.0 23.0 52.0 0.0 . 162 . . Atlas-SNP NPC1 4864 hgsc.bcm.edu hg19 18 21136382 21136382 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NPC1 NM_000271 exon8 c.C1151T p.P384L CTGCTGGGGGCTG . 182.0 84.0 175.0 0.0 . 114 . . Atlas-SNP DSC3 1825 hgsc.bcm.edu hg19 18 28584133 28584133 + Silent SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DSC3 NM_024423 exon13 c.A2088T p.I696I CAGTAATATTGCA . 115.0 41.0 115.0 0.0 . 225 . . Atlas-SNP SETBP1 26040 hgsc.bcm.edu hg19 18 42532195 42532195 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SETBP1 NM_015559 exon4 c.T2890C p.F964L ACCAAGTTCCAAG . 150.0 11.0 176.0 0.0 . 577 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44098132 44098132 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LOXHD1 NM_144612 exon33 c.G5173A p.G1725R TGCTCCCGTTGAT . 87.0 42.0 108.0 0.0 . 367 . . Atlas-SNP TCF4 6925 hgsc.bcm.edu hg19 18 52895534 52895534 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TCF4 NM_001243226 exon20 c.C2244T p.S748S CTCTGAGGACACC . 74.0 15.0 65.0 0.0 . 178 . . Atlas-SNP ST8SIA3 51046 hgsc.bcm.edu hg19 18 55024435 55024435 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ST8SIA3 NM_015879 exon3 c.A594G p.Q198Q TTTCCAAAGAGAT . 151.0 47.0 158.0 0.0 . 73 . . Atlas-SNP VPS4B 9525 hgsc.bcm.edu hg19 18 61071042 61071042 + Nonsense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VPS4B NM_004869 exon5 c.C382T p.R128X TTGGTCGTTCTAT . 67.0 25.0 66.0 0.0 . 33 . . Atlas-SNP TMX3 54495 hgsc.bcm.edu hg19 18 66377257 66377257 + Splice_Site SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMX3 NM_019022 exon5 c.265+1G>C . GGCTTACTAGAAT . 90.0 17.0 96.0 0.0 . 44 . . Atlas-SNP CD226 10666 hgsc.bcm.edu hg19 18 67614087 67614087 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CD226 NM_006566 exon3 c.A265G p.N89D TGTTATTGGAAGC . 210.0 18.0 245.0 0.0 . 51 . . Atlas-SNP CTDP1 9150 hgsc.bcm.edu hg19 18 77488909 77488909 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CTDP1,NS,carcinoma,0,1 CTDP1 NM_004715 exon11 c.C2420T p.A807V TCAGAGCGGTTCC . 53.0 9.0 67.0 0.0 . 67 . . Atlas-SNP ADNP2 22850 hgsc.bcm.edu hg19 18 77895803 77895803 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADNP2 NM_014913 exon4 c.A2507T p.E836V TTGGGGAGCGGGA . 49.0 13.0 48.0 0.0 . 102 . . Atlas-SNP SHC2 25759 hgsc.bcm.edu hg19 19 438994 438994 + Silent SNP G G A rs372414911 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SHC2 NM_012435 exon3 c.C576T p.G192G CCGGACGCCAGGC . 145.0 95.0 244.0 0.0 . 47 . . Atlas-SNP PTBP1 5725 hgsc.bcm.edu hg19 19 804698 804698 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTBP1 NM_031990 exon6 c.A602G p.H201R TGCTGCACCAGGT . 32.0 19.0 68.0 0.0 . 43 . . Atlas-SNP STK11 6794 hgsc.bcm.edu hg19 19 1218439 1218439 + Nonsense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STK11 NM_000455 exon2 c.T314G p.L105X GGAGGTTACGGCA . 70.0 31.0 94.0 0.0 . 410 . . Atlas-SNP ADAMTSL5 339366 hgsc.bcm.edu hg19 19 1510710 1510710 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADAMTSL5 NM_213604 exon3 c.C119T p.P40L ACCCACGGGGTCC . 84.0 52.0 206.0 0.0 . 24 . . Atlas-SNP TCF3 6929 hgsc.bcm.edu hg19 19 1625583 1625583 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TCF3 NM_003200 exon7 c.G491A p.G164D AGGCTGCCGTCTG . 127.0 87.0 169.0 0.0 . 72 . . Atlas-SNP REXO1 57455 hgsc.bcm.edu hg19 19 1827184 1827184 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . REXO1 NM_020695 exon2 c.T1604C p.V535A CTCGGCACCCCTG . 28.0 18.0 61.0 0.0 . 55 . . Atlas-SNP DOT1L 84444 hgsc.bcm.edu hg19 19 2193778 2193778 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DOT1L NM_032482 exon6 c.C584T p.A195V AGTATGCGGAGGT . 26.0 16.0 54.0 0.0 . 205 . . Atlas-SNP LINGO3 645191 hgsc.bcm.edu hg19 19 2290416 2290416 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LINGO3 NM_001101391 exon2 c.G1360A p.A454T GGCCCGCGCTGGT . 13.0 11.0 25.0 0.0 . 19 . . Atlas-SNP SEMA6B 10501 hgsc.bcm.edu hg19 19 4548377 4548377 + Missense_Mutation SNP G G A rs145507498 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SEMA6B NM_032108 exon13 c.C1352T p.A451V GTCCCCGCCTCAG . 140.0 61.0 122.0 0.0 . 51 . G|1.000;A|0.000 Atlas-SNP ARRDC5 645432 hgsc.bcm.edu hg19 19 4891359 4891359 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARRDC5 NM_001080523 exon3 c.C728T p.S243F AGCCGAGACCGCC . 48.0 17.0 56.0 0.0 . 19 . . Atlas-SNP ARRDC5 645432 hgsc.bcm.edu hg19 19 4891371 4891371 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARRDC5 NM_001080523 exon3 c.C716A p.A239E CGCTCTGCACTGG . 51.0 17.0 55.0 0.0 . 19 . . Atlas-SNP KDM4B 23030 hgsc.bcm.edu hg19 19 5119732 5119732 + Missense_Mutation SNP C C T rs374489612 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KDM4B NM_015015 exon11 c.C1184T p.T395M AGGGTACGGCTGG . 181.0 155.0 194.0 1.0 . 120 . . Atlas-SNP SAFB2 9667 hgsc.bcm.edu hg19 19 5604862 5604862 + Missense_Mutation SNP G G A rs142026681 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SAFB2 NM_014649 exon10 c.C1382T p.A461V TTGGTCGCCTCGT . 62.0 18.0 83.0 0.0 . 90 . G|1.000;A|0.000 Atlas-SNP SAFB 6294 hgsc.bcm.edu hg19 19 5661679 5661679 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SAFB NM_002967 exon15 c.C2013T p.R671R GGAGCGCGAACGC . 118.0 10.0 129.0 0.0 . 74 . . Atlas-SNP TRIP10 9322 hgsc.bcm.edu hg19 19 6743585 6743585 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIP10 NM_004240 exon6 c.C489T p.N163N TATCAACGCCACC . 65.0 20.0 53.0 0.0 . 104 . . Atlas-SNP ZNF358 140467 hgsc.bcm.edu hg19 19 7585482 7585482 + Missense_Mutation SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF358 NM_018083 exon2 c.C1354A p.L452I TTGGGCCTCAGCC . 110.0 49.0 93.0 0.0 . 41 . . Atlas-SNP XAB2 56949 hgsc.bcm.edu hg19 19 7687717 7687717 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 XAB2,NS,carcinoma,0,2 XAB2 NM_020196 exon10 c.C1302T p.S434S CCACACGCTTGCC . 103.0 9.0 101.0 0.0 . 69 . . Atlas-SNP CERS4 79603 hgsc.bcm.edu hg19 19 8320763 8320763 + Silent SNP C C T rs368700192 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_024552 exon6 c.C468T p.H156H GTACCACGTGAGT . 52.0 19.0 47.0 0.0 . . . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9071612 9071612 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MUC16 NM_024690 exon3 c.T15834C p.S5278S CGATGCAGACTCA . 116.0 5.0 93.0 0.0 . 4315 . . Atlas-SNP ZNF266 10781 hgsc.bcm.edu hg19 19 9524021 9524021 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF266 NM_001271314 exon11 c.A1580C p.K527T AAGGCTTTCCCGC . 124.0 43.0 127.0 0.0 . 65 . . Atlas-SNP PPAN-P2RY11 692312 hgsc.bcm.edu hg19 19 10225062 10225062 + Missense_Mutation SNP C C G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPAN-P2RY11 NM_001040664 exon13 c.C2033G p.A678G TCTACGCCAGCTC . 57.0 29.0 59.0 0.0 . 81 . . Atlas-SNP ICAM5 7087 hgsc.bcm.edu hg19 19 10405166 10405166 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ICAM5 NM_003259 exon9 c.G2080A p.G694S GCCCGGGGTCGCC . 130.0 51.0 142.0 0.0 . 53 . . Atlas-SNP SLC44A2 57153 hgsc.bcm.edu hg19 19 10748543 10748543 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC44A2 NM_020428 exon18 c.C1707T p.Y569Y CATCTACGGCACC . 99.0 34.0 118.0 0.0 . 56 . . Atlas-SNP LDLR 3949 hgsc.bcm.edu hg19 19 11217304 11217304 + Missense_Mutation SNP G G A rs139507589 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LDLR NM_001195798 exon5 c.G758A p.R253Q GCAGCCGGCAGTG . 118.0 46.0 136.0 0.0 . 72 . G|1.000;A|0.000 Atlas-SNP ZNF700 90592 hgsc.bcm.edu hg19 19 12059373 12059373 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF700 NM_001271848 exon4 c.C543T p.R181R GTATCGCCCATCC . 161.0 8.0 156.0 0.0 . 81 . . Atlas-SNP NANOS3 342977 hgsc.bcm.edu hg19 19 13988407 13988407 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NANOS3 NM_001098622 exon1 c.C345T p.C115C CCAGTGCGGCGCC . 56.0 24.0 69.0 0.0 . 19 . . Atlas-SNP CC2D1A 54862 hgsc.bcm.edu hg19 19 14024359 14024359 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CC2D1A,NS,carcinoma,0,1 CC2D1A NM_017721 exon6 c.C656T p.A219V GAATCGCGTCAGC . 171.0 64.0 180.0 1.0 . 67 . . Atlas-SNP TPM4 7171 hgsc.bcm.edu hg19 19 16192750 16192750 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TPM4 NM_001145160 exon3 c.C268T p.R90X CTCAACCGACGCA . 48.0 23.0 55.0 0.0 . 28 . . Atlas-SNP TMEM38A 79041 hgsc.bcm.edu hg19 19 16797152 16797152 + Missense_Mutation SNP G G A rs78725797 bycluster TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM38A NM_024074 exon5 c.G608A p.R203H AGACCCGCTGGCT . 44.0 13.0 48.0 0.0 . 32 . . Atlas-SNP ANO8 57719 hgsc.bcm.edu hg19 19 17434419 17434419 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANO8 NM_020959 exon18 c.A3606G p.L1202L GGGCGGTAGCGGT . 44.0 4.0 48.0 0.0 . 67 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22155265 22155265 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF208 NM_007153 exon4 c.A2571G p.G857G TTTCTCTCCAGTA . 42.0 15.0 52.0 0.0 . 817 . . Atlas-SNP URI1 8725 hgsc.bcm.edu hg19 19 30503420 30503420 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_003796 exon10 c.C1407A p.P469P TTTGCCCTTATCA . 106.0 41.0 88.0 0.0 . . . . Atlas-SNP CHST8 64377 hgsc.bcm.edu hg19 19 34263780 34263780 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CHST8 NM_001127895 exon5 c.C1087T p.R363C CTCATCCGCGCGC . 91.0 41.0 102.0 0.0 . 70 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36357195 36357195 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIRREL2 NM_199180 exon15 c.A1928G p.N643S ACTTCAACCCACA . 82.0 33.0 67.0 0.0 . 170 . . Atlas-SNP ZNF461 92283 hgsc.bcm.edu hg19 19 37130266 37130266 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF461 NM_153257 exon6 c.A981C p.K327N ATAGGGTTTTTCA . 104.0 38.0 117.0 0.0 . 73 . . Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38573540 38573540 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIPA1L3 NM_015073 exon3 c.C1335T p.S445S CTTCTCCCGGGCT . 85.0 39.0 96.0 0.0 . 150 . . Atlas-SNP MAP4K1 11184 hgsc.bcm.edu hg19 19 39096218 39096218 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAP4K1 NM_007181 exon18 c.C1353T p.T451T ATGGGCGGTGAGG . 81.0 33.0 108.0 0.0 . 165 . . Atlas-SNP HNRNPL 3191 hgsc.bcm.edu hg19 19 39329068 39329068 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HNRNPL NM_001533 exon10 c.C1526T p.P509L TCCAGCGGGGCGT . 109.0 39.0 78.0 0.0 . 67 . . Atlas-SNP ADCK4 79934 hgsc.bcm.edu hg19 19 41219998 41219998 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADCK4 NM_001142555 exon4 c.G263A p.R88H CTGATGCGGGAGG . 142.0 28.0 145.0 0.0 . 92 . . Atlas-SNP SNRPA 6626 hgsc.bcm.edu hg19 19 41268862 41268862 + Silent SNP G G A rs374030639 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SNRPA NM_004596 exon4 c.G483A p.P161P CCAGCCGCCCTAC . 154.0 7.0 125.0 0.0 . 20 . . Atlas-SNP EGLN2 112398 hgsc.bcm.edu hg19 19 41307129 41307129 + Missense_Mutation SNP C C T rs140368149 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EGLN2 NM_053046 exon2 c.C652T p.R218C GGTGGGCGCCTGC . 125.0 63.0 118.0 0.0 . 31 . C|1.000;T|0.000 Atlas-SNP GSK3A 2931 hgsc.bcm.edu hg19 19 42744195 42744195 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GSK3A NM_019884 exon2 c.G383A p.G128D AATGAGCCATTGC . 111.0 12.0 129.0 0.0 . 45 . . Atlas-SNP CNFN 84518 hgsc.bcm.edu hg19 19 42893103 42893103 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CNFN NM_032488 exon2 c.G87A p.T29T GCAGTCCGTGAGA . 39.0 19.0 39.0 0.0 . 5 . . Atlas-SNP ZNF227 7770 hgsc.bcm.edu hg19 19 44739561 44739561 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ZNF227,NS,carcinoma,0,1 ZNF227 NM_182490 exon6 c.C978T p.C326C TAGATGCGACAGT . 57.0 27.0 77.0 0.0 . 62 . . Atlas-SNP ZNF235 9310 hgsc.bcm.edu hg19 19 44791785 44791785 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF235 NM_004234 exon5 c.T1803C p.C601C TGCATCACACTTG . 159.0 74.0 161.0 0.0 . 60 . . Atlas-SNP PVR 5817 hgsc.bcm.edu hg19 19 45162189 45162189 + Missense_Mutation SNP C C T rs35385129 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PVR NM_001135770 exon6 c.C1171T p.R391C AGCTGCCGTAATT . 68.0 31.0 64.0 0.0 . 23 . C|0.834;A|0.166 Atlas-SNP APOE 348 hgsc.bcm.edu hg19 19 45411140 45411140 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . APOE NM_000041 exon3 c.G167A p.R56H ACCTGCGCTGGGT . 107.0 46.0 106.0 0.0 . 11 . . Atlas-SNP GLTSCR1 29998 hgsc.bcm.edu hg19 19 48202008 48202008 + Silent SNP C C T rs371897707 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GLTSCR1 NM_015711 exon12 c.C3366T p.G1122G CCAGGGCGCCCTC . 47.0 22.0 67.0 0.0 . 79 . . Atlas-SNP CA11 770 hgsc.bcm.edu hg19 19 49148722 49148722 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CA11 NM_001217 exon2 c.C80T p.P27L GGTGCTGGTCCGA . 88.0 31.0 82.0 0.0 . 29 . . Atlas-SNP FUT1 2523 hgsc.bcm.edu hg19 19 49254381 49254381 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FUT1 NM_000148 exon4 c.C158A p.A53D AAGATGGCCACTG . 113.0 43.0 142.0 0.0 . 44 . . Atlas-SNP ALDH16A1 126133 hgsc.bcm.edu hg19 19 49965147 49965147 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ALDH16A1,colon,carcinoma,0,1 ALDH16A1 NM_153329 exon7 c.C766T p.R256C GAAGGGCGTGCCC . 149.0 67.0 137.0 0.0 . 54 . . Atlas-SNP TBC1D17 79735 hgsc.bcm.edu hg19 19 50391714 50391714 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TBC1D17 NM_024682 exon17 c.C1780T p.L594L CTGGGGCTGGCCC . 81.0 11.0 99.0 0.0 . 39 . . Atlas-SNP ZNF473 25888 hgsc.bcm.edu hg19 19 50542425 50542425 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF473 NM_015428 exon3 c.T17C p.V6A AATTTGTGACCCT . 76.0 28.0 103.0 0.0 . 86 . . Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50794187 50794187 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 MYH14_ENST00000262269,colon,carcinoma,0,1 MYH14 NM_001145809 exon36 c.G5009A p.R1670H AGCAGCGCACTCT . 137.0 54.0 117.0 0.0 . 261 . . Atlas-SNP KLK10 5655 hgsc.bcm.edu hg19 19 51520382 51520382 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KLK10 NM_145888 exon3 c.G253A p.A85T AGTGCGCGGCCGT . 149.0 64.0 117.0 0.0 . 32 . . Atlas-SNP VSIG10L 147645 hgsc.bcm.edu hg19 19 51840531 51840531 + Nonsense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VSIG10L NM_001163922 exon7 c.C2266T p.Q756X CTGGCTGGCCCCC . 129.0 52.0 128.0 0.0 . 40 . . Atlas-SNP SIGLEC6 946 hgsc.bcm.edu hg19 19 52034864 52034864 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIGLEC6 NM_001177549 exon1 c.A39G p.L13L CAGCGGTAGCATC . 188.0 62.0 213.0 0.0 . 142 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52569919 52569919 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF841 NM_001136499 exon7 c.T1216C p.C406R TGCCACATTCATT . 112.0 50.0 96.0 0.0 . 183 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014578 53014578 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001099694 exon6 c.A944G p.Y315C AACCTTACAAGTG . 177.0 71.0 160.0 0.0 . . . . Atlas-SNP LILRB3 11025 hgsc.bcm.edu hg19 19 54721271 54721271 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LILRB3 NM_001081450 exon12 c.G1669A p.A557T GAGAGGCCATTTC . 217.0 52.0 235.0 0.0 . 67 . . Atlas-SNP LENG8 114823 hgsc.bcm.edu hg19 19 54967527 54967527 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LENG8 NM_052925 exon10 c.G1328A p.S443N CCGACAGCTCCTA . 60.0 26.0 62.0 0.0 . 73 . . Atlas-SNP EPS8L1 54869 hgsc.bcm.edu hg19 19 55591068 55591068 + Missense_Mutation SNP C C T rs373089208 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPS8L1 NM_133180 exon5 c.C128T p.T43M TGGTGACGTTCTG . 94.0 30.0 110.0 0.0 . 122 . . Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55693151 55693151 + Missense_Mutation SNP C C T rs201369294 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTPRH NM_002842 exon20 c.G3319A p.A1107T GGATGGCGGCCAC . 95.0 40.0 116.0 0.0 . 139 . C|0.999;T|0.001 Atlas-SNP RPL28 6158 hgsc.bcm.edu hg19 19 55899324 55899324 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RPL28 NM_000991 exon4 c.G232A p.V78M TCCTATGTGCGGA . 80.0 33.0 89.0 0.0 . 31 . . Atlas-SNP ZNF628 89887 hgsc.bcm.edu hg19 19 55992668 55992668 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF628 NM_033113 exon3 c.C108T p.Y36Y CCAGTACGAATGT . 148.0 56.0 129.0 0.0 . 75 . . Atlas-SNP U2AF2 11338 hgsc.bcm.edu hg19 19 56185355 56185355 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 U2AF2,bile_duct,carcinoma,0,1 U2AF2 NM_007279 exon12 c.C1349T p.T450M GCCTGACGGGCCG . 99.0 37.0 117.0 0.0 . 62 . . Atlas-SNP ZNF835 90485 hgsc.bcm.edu hg19 19 57175770 57175770 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF835 NM_001005850 exon2 c.T797A p.I266N TGGCGGATGAGCG . 123.0 51.0 128.0 0.0 . 106 . . Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58384994 58384994 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF814 NM_001144989 exon3 c.C1764T p.I588I GTGCCCGATTGAA . 102.0 47.0 122.0 0.0 . 93 . . Atlas-SNP ZNF544 27300 hgsc.bcm.edu hg19 19 58773536 58773536 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF544 NM_014480 exon7 c.T1564C p.C522R TATGAGTGCAACC . 158.0 59.0 165.0 0.0 . 57 . . Atlas-SNP SLC27A5 10998 hgsc.bcm.edu hg19 19 59011917 59011917 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC27A5 NM_012254 exon5 c.C1339T p.R447C CGCAGCGCCCCAC . 56.0 18.0 65.0 0.0 . 58 . . Atlas-SNP TRIM28 10155 hgsc.bcm.edu hg19 19 59059077 59059077 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIM28 NM_005762 exon5 c.G836A p.S279N TTCGCAGCTCGTA . 125.0 39.0 165.0 0.0 . 46 . . Atlas-SNP NOP56 10528 hgsc.bcm.edu hg19 20 2635511 2635511 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NOP56 NM_006392 exon5 c.C487T p.R163W GTGAACCGGGTGG . 95.0 29.0 102.0 0.0 . 73 . . Atlas-SNP UBOX5 22888 hgsc.bcm.edu hg19 20 3102753 3102753 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UBOX5 NM_014948 exon3 c.A532G p.T178A CATGGGTGATACA . 99.0 42.0 110.0 0.0 . 47 . . Atlas-SNP ATRN 8455 hgsc.bcm.edu hg19 20 3556555 3556555 + Missense_Mutation SNP A A C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATRN NM_139321 exon13 c.A2174C p.D725A GCAATGACCATTG . 67.0 26.0 66.0 0.0 . 118 . . Atlas-SNP ATRN 8455 hgsc.bcm.edu hg19 20 3575207 3575207 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATRN NM_139321 exon20 c.A3404G p.D1135G AGGGGGACGAGTG . 145.0 41.0 146.0 0.0 . 118 . . Atlas-SNP BMP2 650 hgsc.bcm.edu hg19 20 6759209 6759209 + Missense_Mutation SNP G G A rs140884062 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 BMP2,caecum,carcinoma,0,1 BMP2 NM_001200 exon3 c.G664A p.A222T GGACACGCCAACC . 116.0 5.0 133.0 1.0 . 45 . G|1.000;A|0.000 Atlas-SNP JAG1 182 hgsc.bcm.edu hg19 20 10620156 10620156 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . JAG1 NM_000214 exon26 c.A3647G p.Y1216C ACGATGTACTCCA . 120.0 46.0 128.0 0.0 . 213 . . Atlas-SNP FLRT3 23767 hgsc.bcm.edu hg19 20 14307168 14307168 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FLRT3 NM_013281 exon2 c.G985A p.V329M CACGCACGTTGAC . 210.0 77.0 221.0 0.0 . 67 . . Atlas-SNP DZANK1 55184 hgsc.bcm.edu hg19 20 18365673 18365673 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DZANK1,caecum,carcinoma,0,4 DZANK1 NM_001099407 exon20 c.G2080A p.A694T AAGTGGCGGTGCT . 88.0 29.0 100.0 0.0 . 65 . . Atlas-SNP C20orf78 100128496 hgsc.bcm.edu hg19 20 18805926 18805926 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C20orf78 NM_001242671 exon2 c.A100G p.K34E GGCTCTTGTGGGA . 79.0 26.0 94.0 0.0 . 2 . . Atlas-SNP PAX1 5075 hgsc.bcm.edu hg19 20 21687178 21687178 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PAX1 NM_006192 exon2 c.G389A p.G130D AGCTGGGCATCCG . 86.0 27.0 72.0 0.0 . 152 . . Atlas-SNP NANP 140838 hgsc.bcm.edu hg19 20 25604493 25604493 + Splice_Site SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NANP NM_152667 exon2 c.90+2T>A . GACGTTACCTCCA . 143.0 47.0 155.0 0.0 . 10 . . Atlas-SNP BPIFB4 149954 hgsc.bcm.edu hg19 20 31671633 31671633 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_182519 exon3 c.C630T p.G210G CCTGGGCGTGCTC . 87.0 28.0 88.0 0.0 . . . . Atlas-SNP MYH7B 57644 hgsc.bcm.edu hg19 20 33588879 33588879 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYH7B NM_020884 exon41 c.G5519A p.R1840H CGGTGCGCGAGCT . 243.0 100.0 201.0 0.0 . 145 . . Atlas-SNP EDEM2 55741 hgsc.bcm.edu hg19 20 33719574 33719574 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EDEM2 NM_018217 exon7 c.A715G p.I239V CATCAATGTGGTT . 102.0 32.0 111.0 0.0 . 46 . . Atlas-SNP CEP250 11190 hgsc.bcm.edu hg19 20 34090970 34090970 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CEP250 NM_007186 exon30 c.C4773T p.T1591T TTTGACCCACCTT . 128.0 51.0 124.0 0.0 . 141 . . Atlas-SNP RALGAPB 57148 hgsc.bcm.edu hg19 20 37182643 37182643 + Missense_Mutation SNP C C T rs138852733 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RALGAPB NM_020336 exon22 c.C3296T p.P1099L AGCCCCCGCCTCC . 208.0 47.0 176.0 0.0 . 134 . C|1.000;A|0.000 Atlas-SNP PPP1R16B 26051 hgsc.bcm.edu hg19 20 37536807 37536807 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPP1R16B NM_015568 exon10 c.A1165T p.T389S AGGGAGACCAGGA . 338.0 126.0 373.0 0.0 . 103 . . Atlas-SNP SPINT3 10816 hgsc.bcm.edu hg19 20 44141453 44141453 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPINT3 NM_006652 exon2 c.C108T p.C36C AAAAGCGCATACA . 58.0 19.0 84.0 0.0 . 12 . . Atlas-SNP SNX21 90203 hgsc.bcm.edu hg19 20 44469566 44469566 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SNX21 NM_033421 exon4 c.C736T p.R246W CTGCGGCGGGCAC . 73.0 39.0 84.0 0.0 . 23 . . Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44596429 44596429 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ZNF335,colon,carcinoma,0,1 ZNF335 NM_022095 exon5 c.G758A p.R253Q CTGCTCCGGTACT . 57.0 28.0 56.0 0.0 . 115 . . Atlas-SNP CD40 958 hgsc.bcm.edu hg19 20 44750964 44750964 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CD40 NM_152854 exon3 c.A223G p.T75A AGAGAGACACACT . 102.0 39.0 119.0 0.0 . 33 . . Atlas-SNP SULF2 55959 hgsc.bcm.edu hg19 20 46307534 46307534 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SULF2 NM_001161841 exon8 c.T1079C p.V360A TTGAGGACGATGT . 56.0 29.0 34.0 0.0 . 131 . . Atlas-SNP PTGIS 5740 hgsc.bcm.edu hg19 20 48156217 48156217 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 PTGIS,NS,carcinoma,0,1 PTGIS NM_000961 exon5 c.G563A p.R188H TGGGTGCGTGGCA . 49.0 20.0 41.0 0.0 . 60 . . Atlas-SNP KCNG1 3755 hgsc.bcm.edu hg19 20 49626762 49626762 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCNG1 NM_002237 exon2 c.G114A p.A38A GTAGAACGCGCCC . 30.0 9.0 40.0 0.0 . 86 . . Atlas-SNP SALL4 57167 hgsc.bcm.edu hg19 20 50408386 50408386 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SALL4 NM_020436 exon2 c.G636A p.P212P GACCCACGGGATG . 51.0 29.0 42.0 0.0 . 168 . . Atlas-SNP ZNF217 7764 hgsc.bcm.edu hg19 20 52192757 52192757 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF217 NM_006526 exon3 c.C2546T p.P849L GGTGCAGGGGAAA . 65.0 33.0 87.0 0.0 . 227 . . Atlas-SNP ZNF217 7764 hgsc.bcm.edu hg19 20 52198883 52198883 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 ZNF217_ENST00000371471,colon,carcinoma,0,2 ZNF217 NM_006526 exon1 c.C483T p.C161C TCTTCCGCACATG . 79.0 34.0 94.0 0.0 . 227 . . Atlas-SNP CSTF1 1477 hgsc.bcm.edu hg19 20 54978541 54978541 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CSTF1,NS,carcinoma,0,1 CSTF1 NM_001033522 exon6 c.C1054T p.R352C AGTGGACGCCAGG . 102.0 42.0 103.0 0.0 . 29 . . Atlas-SNP STX16 8675 hgsc.bcm.edu hg19 20 57242608 57242608 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . STX16 NM_001001433 exon3 c.T207C p.G69G GATTGGTGTGACA . 146.0 70.0 121.0 0.0 . 36 . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60887270 60887270 + Missense_Mutation SNP T T G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LAMA5 NM_005560 exon69 c.A9463C p.S3155R GGGCGCTGTGGAA . 175.0 72.0 231.0 0.0 . 268 . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61527589 61527589 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DIDO1 NM_080797 exon8 c.A2210T p.N737I ACCTGATTTTTAG . 128.0 47.0 117.0 0.0 . 321 . . Atlas-SNP SLC17A9 63910 hgsc.bcm.edu hg19 20 61588143 61588143 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC17A9 NM_022082 exon2 c.C86T p.T29M CGGGGACGCTGCT . 54.0 21.0 65.0 0.0 . 54 . . Atlas-SNP YTHDF1 54915 hgsc.bcm.edu hg19 20 61834090 61834090 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . YTHDF1 NM_017798 exon4 c.A1202G p.D401G TGGATGTCGTCCT . 106.0 39.0 91.0 0.0 . 66 . . Atlas-SNP HELZ2 85441 hgsc.bcm.edu hg19 20 62198473 62198473 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001037335 exon7 c.G2238A p.T746T GGCGTCCGTGCAG . 51.0 4.0 79.0 0.0 . . . . Atlas-SNP URB1 9875 hgsc.bcm.edu hg19 21 33687279 33687279 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . URB1 NM_014825 exon39 c.G6766A p.A2256T CGATGGCCTCCTC . 155.0 63.0 175.0 0.0 . 176 . . Atlas-SNP TCP10L 140290 hgsc.bcm.edu hg19 21 33951121 33951121 + Silent SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TCP10L NM_144659 exon4 c.A381T p.G127G AATTTTTCCAAAA . 223.0 80.0 242.0 0.0 . 24 . . Atlas-SNP DOPEY2 9980 hgsc.bcm.edu hg19 21 37600040 37600040 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DOPEY2 NM_005128 exon13 c.G1530A p.V510V CCTGGTGCAGCCT . 49.0 19.0 81.0 0.0 . 184 . . Atlas-SNP DOPEY2 9980 hgsc.bcm.edu hg19 21 37603120 37603120 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DOPEY2 NM_005128 exon14 c.A2038G p.N680D AGGAAGAACTCTT . 138.0 66.0 131.0 0.0 . 184 . . Atlas-SNP COL18A1 80781 hgsc.bcm.edu hg19 21 46910776 46910776 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL18A1 NM_030582 exon20 c.G2598A p.R866R CAGCCGGGGAGAA . 169.0 83.0 142.0 0.0 . 129 . . Atlas-SNP COL6A1 1291 hgsc.bcm.edu hg19 21 47422161 47422161 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL6A1 NM_001848 exon32 c.G2096A p.G699D TGGCGGGCGGCAC . 97.0 21.0 90.0 0.0 . 101 . . Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47551948 47551948 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL6A2 NM_001849 exon28 c.A2542G p.N848D GAGCAGAACTTCC . 112.0 54.0 107.0 0.0 . 351 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47848330 47848330 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCNT NM_006031 exon35 c.C7516T p.L2506L AAGTCCCTGGAGC . 114.0 48.0 127.0 0.0 . 283 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47848382 47848382 + Missense_Mutation SNP C C A rs368569999 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCNT NM_006031 exon35 c.C7568A p.A2523E TCCAGGCGCTGCG . 91.0 43.0 107.0 0.0 . 283 . . Atlas-SNP IL17RA 23765 hgsc.bcm.edu hg19 22 17588634 17588634 + Missense_Mutation SNP T T A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IL17RA NM_014339 exon12 c.T1063A p.Y355N GAAAAATACAGTG . 86.0 32.0 110.0 0.0 . 62 . . Atlas-SNP SLC25A1 6576 hgsc.bcm.edu hg19 22 19165655 19165655 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC25A1 NM_001256534 exon1 c.C214T p.R72W TGCCCCGGTACCG . 117.0 8.0 132.0 0.0 . 14 . . Atlas-SNP C22orf29 79680 hgsc.bcm.edu hg19 22 19839777 19839777 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C22orf29 NM_024627 exon3 c.G8A p.R3H CGGCCACGAGGCA . 144.0 52.0 155.0 0.0 . 23 . . Atlas-SNP RTN4R 65078 hgsc.bcm.edu hg19 22 20229291 20229291 + Silent SNP G G A rs374126911 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RTN4R NM_023004 exon2 c.C1365T p.C455C GAGGCTGCAGGTG . 139.0 57.0 136.0 0.0 . 14 . . Atlas-SNP RIMBP3 85376 hgsc.bcm.edu hg19 22 20458139 20458139 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RIMBP3 NM_015672 exon1 c.C3163T p.R1055W CCACCCGCGCCCG . 1049.0 170.0 1061.0 0.0 . 42 . . Atlas-SNP GNAZ 2781 hgsc.bcm.edu hg19 22 23438309 23438309 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GNAZ NM_002073 exon2 c.C427T p.R143C TTCAGCCGCTCCA . 42.0 8.0 74.0 0.0 . 45 . . Atlas-SNP SLC2A11 66035 hgsc.bcm.edu hg19 22 24219966 24219966 + Missense_Mutation SNP G G A rs144951215 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC2A11 NM_030807 exon7 c.G616A p.G206R GTGCCCGGGGCGC . 106.0 38.0 126.0 0.0 . 32 . G|1.000;A|0.000 Atlas-SNP GGT5 2687 hgsc.bcm.edu hg19 22 24628858 24628858 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GGT5 NM_001099781 exon4 c.G529A p.A177T CAGGGGCCACCAC . 220.0 72.0 256.0 0.0 . 61 . . Atlas-SNP ADRBK2 157 hgsc.bcm.edu hg19 22 26100174 26100174 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ADRBK2 NM_005160 exon15 c.C1326T p.G442G CGGAGGCGGGTAG . 134.0 58.0 166.0 0.0 . 78 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26306993 26306993 + Silent SNP C C A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MYO18B NM_032608 exon33 c.C5340A p.G1780G GGAAGGCTTGATC . 100.0 29.0 104.0 0.0 . 322 . . Atlas-SNP GAS2L1 10634 hgsc.bcm.edu hg19 22 29706652 29706652 + Nonsense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GAS2L1 NM_152237 exon4 c.C766T p.R256X ATGGTGCGAGTGG . 47.0 24.0 63.0 0.0 . 54 . . Atlas-SNP SEC14L6 730005 hgsc.bcm.edu hg19 22 30928661 30928661 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SEC14L6 NM_001193336 exon5 c.G274A p.D92N CACCGTCGTGGCC . 111.0 42.0 112.0 0.0 . 6 . . Atlas-SNP SLC35E4 339665 hgsc.bcm.edu hg19 22 31042723 31042723 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC35E4 NM_001001479 exon2 c.G758A p.R253H ACTCTCGCCTCTG . 59.0 29.0 61.0 0.0 . 22 . . Atlas-SNP DUSP18 150290 hgsc.bcm.edu hg19 22 31059555 31059555 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DUSP18,NS,carcinoma,0,1 DUSP18 NM_152511 exon2 c.G436A p.G146S AAAAGCCGCTGTT . 108.0 41.0 102.0 1.0 . 10 . . Atlas-SNP SMTN 6525 hgsc.bcm.edu hg19 22 31484696 31484696 + Silent SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SMTN NM_001207018 exon4 c.T474C p.A158A AAGCGCTGGTGAG . 154.0 13.0 172.0 0.0 . 219 . . Atlas-SNP RFPL2 10739 hgsc.bcm.edu hg19 22 32586994 32586994 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RFPL2 NM_001098527 exon5 c.G902A p.R301H AACTTGCGGTCTA . 218.0 108.0 234.0 0.0 . 81 . . Atlas-SNP GGA1 26088 hgsc.bcm.edu hg19 22 38016853 38016853 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GGA1 NM_001001560 exon6 c.A461G p.D154G CAGATGACACTAC . 110.0 37.0 118.0 0.0 . 39 . . Atlas-SNP MICALL1 85377 hgsc.bcm.edu hg19 22 38315101 38315101 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MICALL1 NM_033386 exon5 c.G485A p.S162N CCAGCAGCACGTG . 101.0 47.0 96.0 0.0 . 53 . . Atlas-SNP PICK1 9463 hgsc.bcm.edu hg19 22 38470413 38470413 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PICK1 NM_012407 exon12 c.C934T p.R312C CAGATGCGCAAGG . 191.0 42.0 200.0 0.0 . 30 . . Atlas-SNP CBX6 23466 hgsc.bcm.edu hg19 22 39262901 39262901 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CBX6 NM_014292 exon5 c.C552T p.G184G GCCAGCGCCCTTG . 73.0 17.0 86.0 0.0 . 26 . . Atlas-SNP SMCR7L 54471 hgsc.bcm.edu hg19 22 39908399 39908399 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SMCR7L NM_019008 exon5 c.T485C p.V162A CTGCTGTGGACAT . 64.0 23.0 58.0 0.0 . 33 . . Atlas-SNP EFCAB6 64800 hgsc.bcm.edu hg19 22 44067890 44067890 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EFCAB6 NM_022785 exon15 c.G1603A p.V535I AGAAGACGTGCAT . 156.0 58.0 174.0 0.0 . 177 . . Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46829297 46829297 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CELSR1 NM_014246 exon5 c.A4604G p.Y1535C TTGTTGTAGTACT . 42.0 11.0 51.0 0.0 . 242 . . Atlas-SNP PLCXD1 55344 hgsc.bcm.edu hg19 X 209880 209880 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PLCXD1 NM_018390 exon6 c.G728A p.R243H GCGGCCGCCCAGG . 181.0 38.0 208.0 0.0 . 18 . . Atlas-SNP CSF2RA 1438 hgsc.bcm.edu hg19 X 1424529 1424529 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CSF2RA NM_001161531 exon13 c.G1134A p.P378P GGGACCGCAGCGT . 576.0 250.0 600.0 0.0 . 153 . . Atlas-SNP SHROOM2 357 hgsc.bcm.edu hg19 X 9866241 9866241 + Silent SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SHROOM2 NM_001649 exon5 c.C2802T p.V934V TTCTGTCGAACTG . 244.0 137.0 268.0 0.0 . 139 . . Atlas-SNP DCAF8L2 347442 hgsc.bcm.edu hg19 X 27765564 27765564 + Silent SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DCAF8L2 NM_001136533 exon1 c.A552G p.R184R GCCCCGACCTCGC . 109.0 87.0 136.0 1.0 . 79 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 31496268 31496268 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DMD NM_004006 exon59 c.C8892T p.G2964G GAGATCGCCCACG . 48.0 35.0 56.0 0.0 . 2127 . . Atlas-SNP PPP1R3F 89801 hgsc.bcm.edu hg19 X 49127168 49127168 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPP1R3F NM_033215 exon1 c.G836A p.R279H ACGGCCGCAACTA . 83.0 66.0 78.0 0.0 . 56 . . Atlas-SNP WNK3 65267 hgsc.bcm.edu hg19 X 54321142 54321142 + Missense_Mutation SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WNK3 NM_001002838 exon8 c.T1537A p.S513T CCATAGACTTGCA . 49.0 46.0 42.0 0.0 . 218 . . Atlas-SNP KIAA2022 340533 hgsc.bcm.edu hg19 X 73963111 73963111 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KIAA2022 NM_001008537 exon3 c.C1281T p.G427G AAGATGGCCCTGC . 47.0 39.0 44.0 0.0 . 262 . . Atlas-SNP ATRX 546 hgsc.bcm.edu hg19 X 76920179 76920179 + Missense_Mutation SNP T T C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATRX NM_000489 exon11 c.A3898G p.K1300E TTTTTTTCCCTTC . 34.0 25.0 58.0 0.0 . 833 . . Atlas-SNP BRWD3 254065 hgsc.bcm.edu hg19 X 79965042 79965042 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BRWD3 NM_153252 exon21 c.G2360A p.R787H GTCCTGCGTAAAG . 87.0 64.0 72.0 0.0 . 251 . . Atlas-SNP KLHL4 56062 hgsc.bcm.edu hg19 X 86877225 86877225 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KLHL4 NM_019117 exon5 c.G939T p.E313D CATTGAGGTAATA . 247.0 172.0 273.0 0.0 . 263 . . Atlas-SNP PCDH11X 27328 hgsc.bcm.edu hg19 X 91873881 91873881 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDH11X NM_032968 exon7 c.G3986A p.R1329H CTCCACGCCAACA . 199.0 24.0 225.0 0.0 . 714 . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108691376 108691376 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GUCY2F NM_001522 exon6 c.C1491T p.I497I CAACTGGATTTTA . 73.0 63.0 76.0 0.0 . 178 . . Atlas-SNP NXT2 55916 hgsc.bcm.edu hg19 X 108779154 108779154 + Nonsense_Mutation SNP G G T rs142540133 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NXT2 NM_018698 exon1 c.G43T p.G15X AGAGAAGGATACC . 394.0 31.0 373.0 0.0 . 16 . G|1.000;C|0.000 Atlas-SNP AMOT 154796 hgsc.bcm.edu hg19 X 112033910 112033910 + Missense_Mutation SNP G G T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AMOT NM_001113490 exon7 c.C2027A p.A676D ATATCAGCTTCCA . 98.0 73.0 108.0 0.0 . 204 . . Atlas-SNP BCORL1 63035 hgsc.bcm.edu hg19 X 129185838 129185838 + Missense_Mutation SNP A A G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BCORL1 NM_021946 exon11 c.A4700G p.E1567G CAGAGGAAAAAGA . 102.0 91.0 91.0 0.0 . 213 . . Atlas-SNP PNMA5 114824 hgsc.bcm.edu hg19 X 152158844 152158844 + Silent SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PNMA5 NM_001103150 exon2 c.C1299T p.N433N TGCCTCGTTTCCC . 70.0 51.0 61.0 0.0 . 63 . . Atlas-SNP L1CAM 3897 hgsc.bcm.edu hg19 X 153138119 153138119 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . L1CAM NM_000425 exon3 c.C125T p.P42L CGCCGTGGAGACT . 101.0 73.0 115.0 0.0 . 189 . . Atlas-SNP MECP2 4204 hgsc.bcm.edu hg19 X 153296806 153296806 + Missense_Mutation SNP G G A rs28934906 bycluster TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MECP2 NM_001110792 exon3 c.C509T p.T170M GTTACCGTGAAGT . 79.0 68.0 98.0 0.0 . 41 . G|1.000;|0.000 Atlas-SNP FLNA 2316 hgsc.bcm.edu hg19 X 153599342 153599342 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FLNA NM_001456 exon2 c.G272A p.R91H TGCTTGCGGTGCA . 86.0 4.0 87.0 0.0 . 373 . . Atlas-SNP SPRY3 10251 hgsc.bcm.edu hg19 X 155004148 155004148 + Silent SNP C C T rs368582313 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SPRY3 NM_005840 exon2 c.C615T p.N205N AGACAACTGTGCT . 154.0 57.0 154.0 0.0 . 52 . . Atlas-SNP PCDH11Y 83259 hgsc.bcm.edu hg19 Y 5369160 5369160 + Silent SNP A A T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDH11Y NM_032973 exon3 c.A3192T p.G1064G TGGTGGACTGGGA . 411.0 288.0 413.0 2.0 . 163 . . Atlas-SNP DDX3Y 8653 hgsc.bcm.edu hg19 Y 15026814 15026814 + Missense_Mutation SNP C C T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DDX3Y NM_004660 exon9 c.C778T p.R260C TATGGGCGCCGCA . 148.0 121.0 179.0 0.0 . 13 . . Atlas-SNP NLGN4Y 22829 hgsc.bcm.edu hg19 Y 16942179 16942179 + Missense_Mutation SNP G G A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NLGN4Y NM_014893 exon5 c.G1381A p.A461T CTGCACGCGCAGT . 197.0 163.0 247.0 0.0 . 44 . . Atlas-SNP DIRAS1 148252 hgsc.bcm.edu hg19 19 2717762 2717762 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DIRAS1,NS,carcinoma,0,1 DIRAS1 NM_145173 exon2 c.44delC p.A15fs . . 23.0 17.0 46.0 0.0 . 26 . . Atlas-Indel,Pindel KAT6B 23522 hgsc.bcm.edu hg19 10 76784946 76784949 + Frame_Shift_Del DEL ACAA ACAA - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 ACAA ACAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_012330 exon17 c.3602_3605del p.1201_1202del . . 211.0 73.0 272.0 0.0 . . . . Atlas-Indel,Pindel KCNK17 89822 hgsc.bcm.edu hg19 6 39272281 39272281 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCNK17 NM_001135111 exon3 c.504delC p.G168fs . . 233.0 47.0 148.0 0.0 . 61 . . Atlas-Indel,Pindel SLC26A7 115111 hgsc.bcm.edu hg19 8 92352747 92352747 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLC26A7 NM_052832 exon8 c.993delC p.A331fs . . 80.0 33.0 77.0 0.0 . 207 . . Atlas-Indel,Pindel SCAP 22937 hgsc.bcm.edu hg19 3 47455478 47455481 + Frame_Shift_Del DEL CTGT CTGT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 CTGT CTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SCAP NM_012235 exon23 c.3704_3707del p.1235_1236del . . 90.0 36.0 77.0 0.0 . 88 . . Atlas-Indel,Pindel NAIP 4671 hgsc.bcm.edu hg19 5 70280772 70280772 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAIP NM_004536 exon12 c.2105delC p.S702fs . . 214.0 22.0 248.0 0.0 . 38 . . Atlas-INDEL MLL4 8085 hgsc.bcm.edu hg19 19 36223002 36223002 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MLL4 NM_014727 exon27 c.5630delT p.L1877fs . . 66.0 27.0 90.0 0.0 . 229 . . Atlas-Indel,Pindel PADI1 29943 hgsc.bcm.edu hg19 1 17555492 17555492 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PADI1 NM_013358 exon8 c.874delG p.A292fs . . 52.0 23.0 56.0 0.0 . 77 . . Atlas-Indel,Pindel AGBL2 79841 hgsc.bcm.edu hg19 11 47701557 47701557 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AGBL2 NM_024783 exon13 c.1985delT p.L662fs . . 109.0 45.0 140.0 0.0 . 73 . . Atlas-Indel,Pindel RIMBP3C 150221 hgsc.bcm.edu hg19 22 21902792 21902792 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RIMBP3C NM_001128633 exon1 c.2475delC p.G825fs . . 169.0 17.0 174.0 0.0 . 6 . . Atlas-INDEL DHRS4L2 317749 hgsc.bcm.edu hg19 14 24470144 24470144 + Splice_Site DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DHRS4L2 NM_001193636 exon4 c.176+1T>- . . . 577.0 209.0 555.0 0.0 . 29 . . Atlas-Indel,Pindel EPHA3 2042 hgsc.bcm.edu hg19 3 89499362 89499363 + Frame_Shift_Ins INS - - C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EPHA3 NM_005233 exon15 c.2532_2533insC p.P844fs . . 272.0 112.0 226.0 0.0 . 501 . . Atlas-Indel,Pindel LRRC37A3 374819 hgsc.bcm.edu hg19 17 62882287 62882288 + Splice_Site DEL AA AA - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRRC37A3 . . . . . . 234.0 22.0 264.0 0.0 . 75 . . Atlas-INDEL OR5D18 219438 hgsc.bcm.edu hg19 11 55587264 55587264 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR5D18 NM_001001952 exon1 c.158delA p.N53fs . . 143.0 32.0 112.0 0.0 . 121 . . Atlas-Indel,Pindel LRRC72 100506049 hgsc.bcm.edu hg19 7 16577286 16577286 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001195280 exon3 c.198delT p.F66fs . . 927.0 273.0 616.0 0.0 . . . . Atlas-Indel,Pindel FOXK2 3607 hgsc.bcm.edu hg19 17 80521292 80521293 + Frame_Shift_Del DEL AG AG - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FOXK2 NM_004514 exon2 c.481_482del p.161_161del . . 73.0 45.0 140.0 0.0 . 46 . . Atlas-Indel,Pindel COL1A2 1278 hgsc.bcm.edu hg19 7 94052290 94052290 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL1A2 NM_000089 exon40 c.2424delT p.G808fs . . 178.0 11.0 169.0 0.0 . 240 . . Atlas-INDEL SORCS3 22986 hgsc.bcm.edu hg19 10 106401491 106401491 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SORCS3 NM_014978 exon1 c.405delG p.Q135fs . . 72.0 30.0 68.0 0.0 . 282 . . Atlas-Indel,Pindel MARCH4 57574 hgsc.bcm.edu hg19 2 217124185 217124186 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MARCH4 NM_020814 exon4 c.1083_1084insC p.P361fs . . 89.0 31.0 113.0 0.0 . 50 . . Atlas-Indel,Pindel DYRK1A 1859 hgsc.bcm.edu hg19 21 38852951 38852951 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DYRK1A NM_001396 exon4 c.338delC p.A113fs . . 225.0 70.0 216.0 0.0 . 85 . . Atlas-Indel,Pindel GPC2 221914 hgsc.bcm.edu hg19 7 99769524 99769525 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPC2 NM_152742 exon7 c.1048_1049insC p.D350fs . . 59.0 19.0 71.0 0.0 . 49 . . Atlas-Indel,Pindel BHLHE41 79365 hgsc.bcm.edu hg19 12 26275589 26275590 + In_Frame_Ins INS - - GCT novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . BHLHE41 NM_030762 exon5 c.859_860insAGC p.G287delinsSG . . 26.0 10.0 46.0 0.0 . 20 . . Atlas-INDEL RPN2 6185 hgsc.bcm.edu hg19 20 35860726 35860726 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RPN2 NM_002951 exon14 c.1608delG p.R536fs . . 81.0 33.0 72.0 0.0 . 45 . . Atlas-Indel,Pindel SSH2 85464 hgsc.bcm.edu hg19 17 27959374 27959375 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SSH2 NM_033389 exon15 c.2757_2758insC p.P919fs . . 70.0 22.0 63.0 0.0 . 107 . . Atlas-Indel,Pindel PIGZ 80235 hgsc.bcm.edu hg19 3 196674301 196674301 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PIGZ NM_025163 exon3 c.1468delA p.T490fs . . 56.0 17.0 64.0 0.0 . 34 . . Atlas-Indel,Pindel ATF4 468 hgsc.bcm.edu hg19 22 39918267 39918267 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATF4 NM_182810 exon3 c.715delA p.R239fs . . 348.0 136.0 411.0 0.0 . 27 . . Atlas-Indel,Pindel ANKRD11 29123 hgsc.bcm.edu hg19 16 89348566 89348568 + In_Frame_Del DEL TCT TCT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANKRD11 NM_001256182 exon10 c.4383_4385del p.1461_1462del . . 63.0 29.0 70.0 0.0 . 195 . . Atlas-Indel,Pindel UBA2 10054 hgsc.bcm.edu hg19 19 34949675 34949675 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UBA2 NM_005499 exon13 c.1246delA p.I416fs . . 142.0 12.0 170.0 0.0 . 53 . . Atlas-Indel,Pindel CNGB1 1258 hgsc.bcm.edu hg19 16 57918254 57918254 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CNGB1 NM_001297 exon33 c.3571delG p.E1191fs . . 75.0 27.0 73.0 0.0 . 105 . . Atlas-Indel,Pindel RIMBP3C 150221 hgsc.bcm.edu hg19 22 21740616 21740616 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RIMBP3C NM_001128633 exon1 c.2468delT p.M823fs . . 159.0 19.0 200.0 0.0 . 6 . . Atlas-INDEL CSN1S1 1446 hgsc.bcm.edu hg19 4 70810695 70810695 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CSN1S1 NM_001890 exon15 c.529delG p.E177fs . . 154.0 68.0 141.0 0.0 . 20 . . Atlas-Indel,Pindel PML 5371 hgsc.bcm.edu hg19 15 74337203 74337203 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PML NM_033238 exon9 c.2502delG p.L834fs . . 82.0 28.0 75.0 0.0 . 169 . . Atlas-Indel,Pindel RSF1 51773 hgsc.bcm.edu hg19 11 77411876 77411876 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RSF1 NM_016578 exon6 c.2399delG p.R800fs . . 36.0 14.0 40.0 0.0 . 105 . . Atlas-Indel,Pindel DNAH10 196385 hgsc.bcm.edu hg19 12 124403305 124403305 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAH10 NM_207437 exon64 c.10960delA p.R3654fs . . 97.0 23.0 76.0 0.0 . 888 . . Atlas-Indel,Pindel PPYR1 5540 hgsc.bcm.edu hg19 10 47087814 47087814 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PPYR1 NM_005972 exon3 c.1030delG p.A344fs . . 224.0 25.0 215.0 0.0 . 54 . . Atlas-Indel,Pindel NOVA2 4858 hgsc.bcm.edu hg19 19 46476610 46476610 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NOVA2 NM_002516 exon1 c.1delA p.M1fs . . 27.0 11.0 36.0 0.0 . 38 . . Atlas-INDEL LY6G6D 58530 hgsc.bcm.edu hg19 6 31683313 31683313 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LY6G6D NM_021246 exon2 c.89delG p.S30fs . . 136.0 11.0 110.0 0.0 . 11 . . Atlas-INDEL ARAP1 116985 hgsc.bcm.edu hg19 11 72437830 72437830 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARAP1 NM_001040118 exon3 c.345delA p.P115fs . . 174.0 59.0 166.0 0.0 . 168 . . Atlas-Indel,Pindel RIC3 79608 hgsc.bcm.edu hg19 11 8159886 8159887 + Frame_Shift_Ins INS - - T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RIC3 NM_001206672 exon3 c.360_361insA p.K120fs . . 60.0 26.0 62.0 0.0 . 42 . . Atlas-Indel,Pindel RBBP6 5930 hgsc.bcm.edu hg19 16 24580479 24580479 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBBP6 NM_006910 exon17 c.2467delG p.E823fs . . 317.0 119.0 336.0 0.0 . 158 . . Atlas-Indel,Pindel CEACAM5 1048 hgsc.bcm.edu hg19 19 42224866 42224866 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CEACAM5 NM_004363 exon8 c.1795delT p.S599fs . . 176.0 64.0 156.0 0.0 . 84 . . Atlas-Indel,Pindel ZNF500 26048 hgsc.bcm.edu hg19 16 4802884 4802885 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF500 NM_021646 exon6 c.936_937insC p.P312fs . . 73.0 24.0 52.0 0.0 . 45 . . Atlas-Indel,Pindel USP38 84640 hgsc.bcm.edu hg19 4 144135967 144135968 + Frame_Shift_Ins INS - - A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . USP38 NM_032557 exon9 c.2838_2839insA p.Y946fs . . 280.0 107.0 313.0 0.0 . 92 . . Atlas-Indel,Pindel PCDHGC3 5098 hgsc.bcm.edu hg19 5 140857742 140857742 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PCDHGC3 NM_032402 exon1 c.2058delG p.Q686fs . . 82.0 28.0 78.0 0.0 . 173 . . Atlas-Indel,Pindel LAMA5 3911 hgsc.bcm.edu hg19 20 60885264 60885264 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LAMA5 NM_005560 exon77 c.10705delT p.Y3569fs . . 78.0 18.0 74.0 0.0 . 268 . . Atlas-Indel,Pindel PHF10 55274 hgsc.bcm.edu hg19 6 170123958 170123959 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PHF10 NM_018288 exon1 c.70_71insC p.G24fs . . 29.0 19.0 21.0 0.0 . 76 . . Atlas-Indel,Pindel FBXL7 23194 hgsc.bcm.edu hg19 5 15928504 15928504 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 FBXL7,right_upper_lobe,carcinoma,0,1 FBXL7 NM_012304 exon3 c.632delG p.C211fs . . 126.0 20.0 124.0 0.0 . 138 . . Atlas-Indel,Pindel LYST 1130 hgsc.bcm.edu hg19 1 235860518 235860519 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LYST NM_000081 exon46 c.10429_10430insC p.S3477fs . . 483.0 147.0 469.0 0.0 . 370 . . Atlas-Indel,Pindel DMTF1 9988 hgsc.bcm.edu hg19 7 86817443 86817444 + Frame_Shift_Ins INS - - A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DMTF1 NM_001142327 exon13 c.1237_1238insA p.Q413fs . . 168.0 60.0 158.0 0.0 . 48 . . Atlas-Indel,Pindel SPATA31A1 647060 hgsc.bcm.edu hg19 9 39890593 39890593 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001085452 exon4 c.3579delG p.V1193fs . . 139.0 34.0 119.0 0.0 . . . . Atlas-INDEL TRIM15 89870 hgsc.bcm.edu hg19 6 30139690 30139692 + In_Frame_Del DEL AGA AGA - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIM15 NM_033229 exon7 c.961_963del p.321_321del . . 375.0 108.0 275.0 0.0 . 34 . . Atlas-Indel,Pindel RAB42 115273 hgsc.bcm.edu hg19 1 28920546 28920547 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 RAB42 NM_001193532 exon2 c.574_575insG p.W192fs . . 92.0 31.0 137.0 0.0 . 10 . . Atlas-Indel,Pindel EVC2 132884 hgsc.bcm.edu hg19 4 5696122 5696122 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . EVC2 NM_147127 exon3 c.391delA p.I131fs . . 398.0 161.0 371.0 0.0 . 202 . . Atlas-Indel,Pindel LZTS3 0 hgsc.bcm.edu hg19 20 3145661 3145663 + In_Frame_Del DEL CTT CTT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_014731 exon3 c.1460_1462del p.487_488del . . 56.0 18.0 74.0 0.0 . . . . Atlas-Indel,Pindel ATXN1 6310 hgsc.bcm.edu hg19 6 16327684 16327684 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ATXN1 NM_000332 exon8 c.859delT p.S287fs . . 206.0 58.0 174.0 0.0 . 117 . . Atlas-Indel,Pindel NAP1L5 266812 hgsc.bcm.edu hg19 4 89618583 89618583 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NAP1L5 NM_153757 exon1 c.324delG p.K108fs . . 83.0 31.0 72.0 0.0 . 23 . . Atlas-Indel,Pindel COL1A1 1277 hgsc.bcm.edu hg19 17 48276626 48276626 + Frame_Shift_Del DEL G G - rs72667016 TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL1A1 NM_000088 exon5 c.433delG p.G145fs . . 260.0 54.0 287.0 0.0 . 158 . . Atlas-Indel,Pindel CADM2 253559 hgsc.bcm.edu hg19 3 85961535 85961536 + Frame_Shift_Ins INS - - A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CADM2 NM_001167675 exon6 c.542_543insA p.L181fs . . 397.0 145.0 389.0 0.0 . 195 . . Atlas-Indel,Pindel ZC3H14 79882 hgsc.bcm.edu hg19 14 89039079 89039079 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZC3H14 NM_001160104 exon6 c.588delG p.Q196fs . . 156.0 58.0 176.0 0.0 . 71 . . Atlas-Indel,Pindel POLD1 5424 hgsc.bcm.edu hg19 19 50905061 50905061 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . POLD1 NM_002691 exon4 c.342delG p.G114fs . . 77.0 28.0 90.0 0.0 . 174 . . Atlas-Indel,Pindel VWA5B2 90113 hgsc.bcm.edu hg19 3 183952090 183952090 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . VWA5B2 NM_138345 exon5 c.724delG p.A242fs . . 109.0 50.0 100.0 0.0 . 47 . . Atlas-Indel,Pindel NUP214 8021 hgsc.bcm.edu hg19 9 134073007 134073008 + Frame_Shift_Ins INS - - C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,3 NUP214 NM_005085 exon29 c.4126_4127insC p.A1376fs . . 157.0 52.0 173.0 0.0 . 166 . . Atlas-Indel,Pindel DCHS2 54798 hgsc.bcm.edu hg19 4 155158059 155158059 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DCHS2 NM_017639 exon25 c.6381delC p.N2127fs . . 75.0 25.0 93.0 0.0 . 594 . . Atlas-Indel,Pindel SYT2 127833 hgsc.bcm.edu hg19 1 202568405 202568407 + In_Frame_Del DEL TCT TCT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SYT2 NM_001136504 exon8 c.993_995del p.331_332del . . 122.0 43.0 114.0 0.0 . 51 . . Atlas-Indel,Pindel SIRPB1 10326 hgsc.bcm.edu hg19 20 1600524 1600524 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIRPB1 NM_001083910 exon1 c.68delG p.R23fs . . 96.0 39.0 99.0 0.0 . 83 . . Atlas-Indel,Pindel SIGLEC5 8778 hgsc.bcm.edu hg19 19 52133551 52133551 + Splice_Site DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SIGLEC5 NM_003830 exon2 c.37+2G>- . . . 142.0 28.0 159.0 0.0 . 67 . . Atlas-INDEL RBM27 54439 hgsc.bcm.edu hg19 5 145609290 145609290 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RBM27 NM_018989 exon5 c.405delG p.E135fs . . 114.0 49.0 130.0 0.0 . 119 . . Atlas-Indel,Pindel C1orf127 148345 hgsc.bcm.edu hg19 1 11007833 11007833 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C1orf127 NM_001170754 exon12 c.2360delC p.A787fs . . 97.0 37.0 87.0 0.0 . 134 . . Atlas-Indel,Pindel APOB 338 hgsc.bcm.edu hg19 2 21225513 21225514 + Frame_Shift_Del DEL TA TA - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . APOB NM_000384 exon29 c.12781_12782del p.4261_4261del . . 123.0 48.0 138.0 0.0 . 761 . . Atlas-Indel,Pindel IPO7 10527 hgsc.bcm.edu hg19 11 9435806 9435806 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IPO7 NM_006391 exon5 c.483delT p.Y161X . . 97.0 23.0 83.0 0.0 . 72 . . Atlas-Indel,Pindel LILRB5 10990 hgsc.bcm.edu hg19 19 54754663 54754664 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LILRB5 NM_001081442 exon13 c.1763_1764insC p.L588fs . . 120.0 44.0 94.0 0.0 . 176 . . Atlas-Indel,Pindel ICT1 3396 hgsc.bcm.edu hg19 17 73008822 73008822 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ICT1 NM_001545 exon1 c.40delG p.A14fs . . 82.0 33.0 88.0 0.0 . 17 . . Atlas-Indel,Pindel FAM98C 147965 hgsc.bcm.edu hg19 19 38893823 38893823 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM98C NM_174905 exon1 c.29delA p.E10fs . . 105.0 52.0 123.0 0.0 . 39 . . Atlas-Indel,Pindel DGCR8 54487 hgsc.bcm.edu hg19 22 20074009 20074009 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DGCR8 NM_001190326 exon2 c.522delA p.I174fs . . 67.0 20.0 70.0 0.0 . 53 . . Atlas-Indel,Pindel COL6A1 1291 hgsc.bcm.edu hg19 21 47414118 47414119 + Frame_Shift_Ins INS - - C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL6A1 NM_001848 exon20 c.1373_1374insC p.G458fs . . 255.0 87.0 263.0 0.0 . 101 . . Atlas-Indel,Pindel IL17C 27189 hgsc.bcm.edu hg19 16 88705522 88705522 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 IL17C NM_013278 exon2 c.139delG p.A47fs . . 107.0 45.0 96.0 0.0 . 6 . . Atlas-Indel,Pindel LRP1 4035 hgsc.bcm.edu hg19 12 57556223 57556223 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LRP1 NM_002332 exon14 c.2325delA p.A775fs . . 68.0 28.0 72.0 0.0 . 428 . . Atlas-Indel,Pindel MPZ 4359 hgsc.bcm.edu hg19 1 161276499 161276499 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MPZ NM_000530 exon3 c.448delG p.V150fs . . 145.0 11.0 173.0 0.0 . 29 . . Atlas-INDEL TP53 7157 hgsc.bcm.edu hg19 17 7578275 7578277 + In_Frame_Del DEL GAG GAG - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 GAG GAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 TP53_ENST00000545858,NS,carcinoma,-1,2 TP53 NM_001126112 exon6 c.573_575del p.191_192del . . 85.0 63.0 215.0 0.0 . 33396 . . Atlas-Indel,Pindel FOXE1 2304 hgsc.bcm.edu hg19 9 100617015 100617015 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FOXE1 NM_004473 exon1 c.818delA p.N273fs . . 162.0 29.0 234.0 0.0 . 19 . . Atlas-Indel,Pindel TCF7L2 6934 hgsc.bcm.edu hg19 10 114900984 114900984 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TCF7L2 NM_001146283 exon6 c.665delA p.H222fs . . 127.0 42.0 148.0 0.0 . 298 . . Atlas-Indel,Pindel NXN 64359 hgsc.bcm.edu hg19 17 726873 726874 + Frame_Shift_Ins INS - - A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NXN NM_022463 exon3 c.611_612insT p.W204fs . . 74.0 52.0 125.0 0.0 . 32 . . Atlas-Indel,Pindel AVPR1A 552 hgsc.bcm.edu hg19 12 63541343 63541343 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AVPR1A NM_000706 exon2 c.1054delA p.S352fs . . 173.0 63.0 155.0 0.0 . 85 . . Atlas-Indel,Pindel PTPN23 25930 hgsc.bcm.edu hg19 3 47451532 47451532 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTPN23 NM_015466 exon20 c.2243delT p.L748fs . . 245.0 23.0 260.0 0.0 . 85 . . Atlas-Indel,Pindel RLTPR 146206 hgsc.bcm.edu hg19 16 67688265 67688265 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . RLTPR NM_001013838 exon31 c.3251delA p.E1084fs . . 128.0 65.0 137.0 0.0 . 124 . . Atlas-Indel,Pindel DNAJC2 27000 hgsc.bcm.edu hg19 7 102953447 102953447 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAJC2 NM_014377 exon16 c.1739delT p.I580fs . . 133.0 24.0 131.0 0.0 . 46 . . Atlas-Indel,Pindel TRIM66 9866 hgsc.bcm.edu hg19 11 8642705 8642705 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIM66 NM_014818 exon15 c.2892delA p.P964fs . . 129.0 51.0 134.0 0.0 . 45 . . Atlas-Indel,Pindel ARHGAP24 83478 hgsc.bcm.edu hg19 4 86916149 86916149 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ARHGAP24 NM_001025616 exon9 c.1341delG p.E447fs . . 162.0 59.0 158.0 0.0 . 116 . . Atlas-Indel,Pindel SOX8 30812 hgsc.bcm.edu hg19 16 1034924 1034924 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SOX8 NM_014587 exon3 c.878delG p.G293fs . . 209.0 19.0 232.0 0.0 . 29 . . Atlas-Indel,Pindel GLI1 2735 hgsc.bcm.edu hg19 12 57865761 57865761 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GLI1 NM_005269 exon12 c.3237delG p.G1079fs . . 129.0 56.0 149.0 0.0 . 141 . . Atlas-Indel,Pindel COBL 23242 hgsc.bcm.edu hg19 7 51095511 51095511 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COBL NM_015198 exon10 c.3283delT p.F1095fs . . 155.0 50.0 197.0 0.0 . 167 . . Atlas-Indel,Pindel GUSB 2990 hgsc.bcm.edu hg19 7 65426023 65426023 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GUSB NM_000181 exon12 c.1818delG p.K606fs . . 80.0 31.0 72.0 0.0 . 52 . . Atlas-Indel,Pindel C19orf38 255809 hgsc.bcm.edu hg19 19 10961063 10961063 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C19orf38 NM_001136482 exon2 c.159delA p.R53fs . . 97.0 46.0 93.0 0.0 . 14 . . Atlas-Indel,Pindel ZNF490 57474 hgsc.bcm.edu hg19 19 12692077 12692077 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF490 NM_020714 exon5 c.813delT p.N271fs . . 83.0 29.0 82.0 0.0 . 42 . . Atlas-Indel,Pindel IBTK 25998 hgsc.bcm.edu hg19 6 82891683 82891683 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . IBTK NM_015525 exon26 c.3639delG p.K1213fs . . 65.0 44.0 111.0 0.0 . 128 . . Atlas-Indel,Pindel GPR101 83550 hgsc.bcm.edu hg19 X 136112908 136112909 + Frame_Shift_Del DEL CT CT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GPR101 NM_054021 exon1 c.926_927del p.309_309del . . 47.0 40.0 51.0 0.0 . 96 . . Atlas-Indel,Pindel NEB 4703 hgsc.bcm.edu hg19 2 152467281 152467281 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NEB NM_001271208 exon79 c.11906delG p.S3969fs . . 70.0 32.0 124.0 0.0 . 1697 . . Atlas-Indel,Pindel C1QTNF4 114900 hgsc.bcm.edu hg19 11 47612245 47612245 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 C1QTNF4,NS,carcinoma,0,1 C1QTNF4 NM_031909 exon2 c.119delT p.L40fs . . 156.0 52.0 128.0 0.0 . 19 . . Atlas-Indel,Pindel CLDN9 9080 hgsc.bcm.edu hg19 16 3063895 3063895 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CLDN9 NM_020982 exon1 c.531delC p.G177fs . . 77.0 36.0 72.0 0.0 . 33 . . Atlas-Indel,Pindel GNRHR2 114814 hgsc.bcm.edu hg19 1 145509916 145509916 + RNA DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . . . . . . . 142.0 29.0 105.0 0.0 . . . . Atlas-INDEL C15orf37 283687 hgsc.bcm.edu hg19 15 80216041 80216042 + RNA INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . C15orf37 . . . . . . 77.0 24.0 100.0 0.0 . 6 . . Atlas-Indel,Pindel PLCXD3 345557 hgsc.bcm.edu hg19 5 41382215 41382215 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PLCXD3 NM_001005473 exon2 c.526delG p.A176fs . . 149.0 56.0 170.0 0.0 . 86 . . Atlas-Indel,Pindel FAM178B 51252 hgsc.bcm.edu hg19 2 97587274 97587275 + Frame_Shift_Ins INS - - T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FAM178B NM_001122646 exon11 c.1405_1406insA p.V469fs . . 281.0 107.0 270.0 0.0 . 35 . . Atlas-Indel,Pindel CNBD2 140894 hgsc.bcm.edu hg19 20 34618504 34618504 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_080834 exon12 c.1652delT p.L551fs . . 219.0 69.0 294.0 0.0 . . . . Atlas-Indel,Pindel TBCC 6903 hgsc.bcm.edu hg19 6 42713333 42713333 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TBCC NM_003192 exon1 c.480delG p.P160fs . . 488.0 85.0 173.0 0.0 . 31 . . Atlas-Indel,Pindel MAML3 55534 hgsc.bcm.edu hg19 4 140811112 140811123 + In_Frame_Del DEL TGCTGCTGCTGT TGCTGCTGCTGT - rs66794549 alternate_allele TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 TGCTGCTGCTGT TGCTGCTGCTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAML3 NM_018717 exon2 c.1468_1479del p.490_493del . . 80.0 12.0 70.0 0.0 . 192 . . Atlas-INDEL SCAP 22937 hgsc.bcm.edu hg19 3 47461047 47461048 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SCAP NM_012235 exon13 c.1711_1712insC p.S571fs . . 155.0 58.0 168.0 0.0 . 88 . . Atlas-Indel,Pindel PTPRD 5789 hgsc.bcm.edu hg19 9 8521421 8521421 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTPRD NM_130391 exon9 c.818delC p.A273fs . . 85.0 35.0 96.0 0.0 . 1348 . . Atlas-Indel,Pindel COL4A1 1282 hgsc.bcm.edu hg19 13 110864792 110864792 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL4A1 NM_001845 exon6 c.360delA p.P120fs . . 103.0 46.0 107.0 0.0 . 372 . . Atlas-Indel,Pindel OR5D13 390142 hgsc.bcm.edu hg19 11 55541296 55541296 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . OR5D13 NM_001001967 exon1 c.382delG p.V128fs . . 156.0 62.0 134.0 0.0 . 96 . . Atlas-Indel,Pindel TRIP6 7205 hgsc.bcm.edu hg19 7 100465745 100465746 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TRIP6 NM_003302 exon3 c.253_254insG p.R85fs . . 202.0 82.0 206.0 0.0 . 45 . . Atlas-Indel,Pindel MAK 4117 hgsc.bcm.edu hg19 6 10764807 10764808 + Frame_Shift_Ins INS - - C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MAK NM_001242957 exon15 c.1825_1826insG p.Q609fs . . 118.0 28.0 98.0 0.0 . 47 . . Atlas-Indel,Pindel MIA3 375056 hgsc.bcm.edu hg19 1 222824056 222824056 + Splice_Site DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MIA3 NM_198551 exon10 c.3798+2A>- . . . 409.0 159.0 471.0 0.0 . 167 . . Atlas-Indel,Pindel OARD1 221443 hgsc.bcm.edu hg19 6 41039018 41039018 + Splice_Site DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 . NM_145063 exon4 c.40-2T>- . . . 339.0 139.0 147.0 0.0 . . . . Atlas-Indel,Pindel DNMT3A 1788 hgsc.bcm.edu hg19 2 25497864 25497864 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNMT3A NM_175629 exon6 c.586delT p.Y196fs . . 136.0 53.0 126.0 0.0 . 1807 . . Atlas-Indel,Pindel CACNA2D3 55799 hgsc.bcm.edu hg19 3 54354484 54354484 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CACNA2D3 NM_018398 exon3 c.219delT p.Y73X . . 85.0 38.0 84.0 0.0 . 159 . . Atlas-Indel,Pindel SF3A1 10291 hgsc.bcm.edu hg19 22 30736780 30736782 + In_Frame_Del DEL CTT CTT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SF3A1 NM_005877 exon8 c.1092_1094del p.364_365del . . 65.0 20.0 88.0 0.0 . 61 . . Atlas-Indel,Pindel UPK3B 80761 hgsc.bcm.edu hg19 7 76140138 76140139 + Frame_Shift_Ins INS - - C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . UPK3B NM_030570 exon1 c.169_170insC p.A57fs . . 182.0 63.0 169.0 0.0 . 15 . . Atlas-Indel,Pindel SLITRK6 84189 hgsc.bcm.edu hg19 13 86369655 86369655 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . SLITRK6 NM_032229 exon2 c.990delT p.P330fs . . 62.0 26.0 61.0 0.0 . 150 . . Atlas-Indel,Pindel ZNF503 84858 hgsc.bcm.edu hg19 10 77159849 77159849 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF503 NM_032772 exon2 c.600delC p.G200fs . . 74.0 28.0 75.0 0.0 . 25 . . Atlas-Indel,Pindel AKAP8 10270 hgsc.bcm.edu hg19 19 15483896 15483896 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . AKAP8 NM_005858 exon5 c.628delT p.F210fs . . 175.0 66.0 151.0 0.0 . 68 . . Atlas-Indel,Pindel SALL4 57167 hgsc.bcm.edu hg19 20 50408677 50408678 + Frame_Shift_Ins INS - - A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 SALL4,NS,carcinoma,0,1 SALL4 NM_020436 exon2 c.345_346insT p.F115fs . . 287.0 113.0 278.0 0.0 . 168 . . Atlas-Indel,Pindel ALMS1 7840 hgsc.bcm.edu hg19 2 73718037 73718038 + Frame_Shift_Ins INS - - T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ALMS1 NM_015120 exon10 c.8948_8949insT p.H2983fs . . 193.0 80.0 187.0 0.0 . 384 . . Atlas-Indel,Pindel PRR14 78994 hgsc.bcm.edu hg19 16 30667498 30667498 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PRR14 NM_024031 exon12 c.1623delA p.A541fs . . 86.0 38.0 91.0 0.0 . 45 . . Atlas-Indel,Pindel ASPM 259266 hgsc.bcm.edu hg19 1 197070523 197070524 + Frame_Shift_Ins INS - - T novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 ASPM NM_018136 exon18 c.7858_7859insA p.Q2620fs . . 35.0 10.0 36.0 0.0 . 444 . . Atlas-Indel,Pindel NCOA1 8648 hgsc.bcm.edu hg19 2 24952369 24952369 + Splice_Site DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NCOA1 NM_147233 exon15 c.2887-2G>- . . . 125.0 11.0 129.0 0.0 . 210 . . Atlas-INDEL WRN 7486 hgsc.bcm.edu hg19 8 30977943 30977943 + Splice_Site DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . WRN NM_000553 exon21 c.2630+2A>- . . . 99.0 38.0 110.0 0.0 . 116 . . Atlas-Indel,Pindel PTPRS 5802 hgsc.bcm.edu hg19 19 5221076 5221076 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PTPRS NM_002850 exon20 c.3391delA p.K1131fs . . 46.0 16.0 71.0 0.0 . 169 . . Atlas-Indel,Pindel SPATA31A1 647060 hgsc.bcm.edu hg19 9 39361342 39361342 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . NM_001085452 exon4 c.3579delG p.V1193fs . . 163.0 28.0 146.0 0.0 . . . . Atlas-INDEL TNIP1 10318 hgsc.bcm.edu hg19 5 150410290 150410290 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TNIP1 NM_001258454 exon18 c.1896delT p.R632fs . . 158.0 58.0 155.0 0.0 . 51 . . Atlas-Indel,Pindel HDAC5 10014 hgsc.bcm.edu hg19 17 42157801 42157801 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HDAC5 NM_001015053 exon22 c.2797delA p.I933fs . . 84.0 39.0 79.0 0.0 . 67 . . Atlas-Indel,Pindel CBFA2T2 9139 hgsc.bcm.edu hg19 20 32224505 32224505 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 CBFA2T2_ENST00000342704,colon,carcinoma,0,2 CBFA2T2 NM_005093 exon10 c.1314delG p.W438X . . 92.0 47.0 79.0 0.0 . 93 . . Atlas-Indel,Pindel DHX9 1660 hgsc.bcm.edu hg19 1 182812563 182812563 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DHX9 NM_001357 exon3 c.245delC p.A82fs . . 82.0 32.0 70.0 0.0 . 114 . . Atlas-Indel,Pindel NTS 4922 hgsc.bcm.edu hg19 12 86276037 86276037 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NTS NM_006183 exon4 c.396delC p.D132fs . . 378.0 122.0 372.0 0.0 . 25 . . Atlas-Indel,Pindel CARS 833 hgsc.bcm.edu hg19 11 3026609 3026612 + Frame_Shift_Del DEL TCTC TCTC - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 TCTC TCTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CARS NM_001014437 exon20 c.2202_2205del p.734_735del . . 99.0 40.0 109.0 0.0 . 114 . . Atlas-Indel,Pindel HYDIN 54768 hgsc.bcm.edu hg19 16 71094473 71094474 + Frame_Shift_Del DEL TT TT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . HYDIN NM_001198542 exon18 c.2544_2545del p.848_849del . . 133.0 18.0 156.0 0.0 . 788 . . Atlas-INDEL TMEM225 338661 hgsc.bcm.edu hg19 11 123754903 123754903 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM225 NM_001013743 exon3 c.343delT p.W115fs . . 65.0 24.0 61.0 0.0 . 56 . . Atlas-Indel,Pindel CCBL2 56267 hgsc.bcm.edu hg19 1 89453938 89453940 + In_Frame_Del DEL AGA AGA - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . CCBL2 NM_001008661 exon2 c.95_97del p.32_33del . . 552.0 104.0 594.0 0.0 . 138 . . Atlas-Indel,Pindel NKX6-1 4825 hgsc.bcm.edu hg19 4 85419145 85419145 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 NKX6-1 NM_006168 exon1 c.238delC p.L80fs . . 89.0 40.0 71.0 0.0 . 38 . . Atlas-Indel,Pindel GJC2 57165 hgsc.bcm.edu hg19 1 228345912 228345913 + In_Frame_Ins INS - - GAG novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GJC2 NM_020435 exon2 c.453_454insGAG p.G151delinsGE . . 364.0 88.0 349.0 0.0 . 20 . . Atlas-Indel,Pindel PAPPA 5069 hgsc.bcm.edu hg19 9 119130003 119130003 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PAPPA NM_002581 exon19 c.4574delT p.I1525fs . . 150.0 23.0 165.0 0.0 . 243 . . Atlas-Indel,Pindel LILRA2 11027 hgsc.bcm.edu hg19 19 55087325 55087325 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . LILRA2 NM_001130917 exon6 c.1003delG p.A335fs . . 135.0 53.0 116.0 0.0 . 99 . . Atlas-Indel,Pindel GLIPR1L2 144321 hgsc.bcm.edu hg19 12 75816819 75816843 + Frame_Shift_Del DEL GAAAAATAAGCGATTGAACACTAGT GAAAAATAAGCGATTGAACACTAGT - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 GAAAAATAAGCGATTGAACACTAGT GAAAAATAAGCGATTGAACACTAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GLIPR1L2 NM_152436 exon4 c.719_743del p.240_248del . . 125.0 27.0 158.0 0.0 . 54 . . Pindel NPC1L1 29881 hgsc.bcm.edu hg19 7 44556938 44556938 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NPC1L1 NM_013389 exon16 c.3237delT p.Y1079fs . . 48.0 15.0 51.0 0.0 . 141 . . Pindel ZNRF1 84937 hgsc.bcm.edu hg19 16 75033762 75033762 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNRF1 NM_032268 exon1 c.192delC p.A64fs . . 70.0 18.0 57.0 0.0 . 6 . . Pindel JARID2 3720 hgsc.bcm.edu hg19 6 15496635 15496636 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 JARID2,NS,carcinoma,0,1 JARID2 NM_004973 exon7 c.1179_1180insG p.L393fs . . 254.0 55.0 246.0 0.0 . 135 . . Pindel DAZAP1 26528 hgsc.bcm.edu hg19 19 1434830 1434830 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 DAZAP1,colon,carcinoma,0,1 DAZAP1 NM_018959 exon12 c.1142delC p.S381fs . . 83.0 14.0 126.0 0.0 . 52 . . Pindel COL28A1 340267 hgsc.bcm.edu hg19 7 7412846 7412846 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL28A1 NM_001037763 exon32 c.2692delG p.V898fs . . 127.0 11.0 104.0 0.0 . 113 . . Pindel COL7A1 1294 hgsc.bcm.edu hg19 3 48605066 48605066 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . COL7A1 NM_000094 exon108 c.7988delA p.E2663fs . . 205.0 56.0 188.0 0.0 . 320 . . Pindel GTPBP1 9567 hgsc.bcm.edu hg19 22 39125562 39125562 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . GTPBP1 NM_004286 exon11 c.1811delA p.E604fs . . 180.0 20.0 179.0 0.0 . 51 . . Pindel KCNH1 3756 hgsc.bcm.edu hg19 1 210857113 210857113 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . KCNH1 NM_172362 exon11 c.2481delC p.G827fs . . 43.0 11.0 50.0 0.0 . 199 . . Pindel TCP10L 140290 hgsc.bcm.edu hg19 21 33949091 33949091 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,2 TCP10L NM_144659 exon5 c.642delT p.G214fs . . 106.0 40.0 102.0 0.0 . 24 . . Pindel NES 10763 hgsc.bcm.edu hg19 1 156642804 156642804 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . NES NM_006617 exon4 c.1177delA p.T393fs . . 84.0 21.0 90.0 0.0 . 196 . . Pindel FKBP15 23307 hgsc.bcm.edu hg19 9 115941002 115941002 + Frame_Shift_Del DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . FKBP15 NM_015258 exon20 c.1995delG p.K665fs . . 59.0 12.0 52.0 0.0 . 128 . . Pindel PVRIG 79037 hgsc.bcm.edu hg19 7 99817848 99817848 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PVRIG NM_024070 exon3 c.229delT p.W77fs . . 55.0 11.0 46.0 0.0 . 20 . . Pindel ANKRD30BL 554226 hgsc.bcm.edu hg19 2 132912268 132912268 + RNA DEL T T - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ANKRD30BL . . . . . . 320.0 70.0 348.0 0.0 . 36 . . Pindel ZNF236 7776 hgsc.bcm.edu hg19 18 74587535 74587535 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ZNF236 NM_007345 exon6 c.748delG p.E250fs . . 134.0 42.0 117.0 0.0 . 325 . . Pindel ABLIM2 84448 hgsc.bcm.edu hg19 4 8031388 8031389 + Frame_Shift_Ins INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . ABLIM2 NM_001130087 exon12 c.1196_1197insC p.R399fs . . 139.0 38.0 140.0 0.0 . 59 . . Pindel DLK2 65989 hgsc.bcm.edu hg19 6 43418413 43418413 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DLK2 NM_206539 exon6 c.1017delT p.P339fs . . 599.0 71.0 222.0 0.0 . 22 . . Pindel PP14571 0 hgsc.bcm.edu hg19 2 241390099 241390100 + RNA INS - - G novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . . . . . . . . 171.0 23.0 170.0 0.0 . . . . Pindel PLOD3 8985 hgsc.bcm.edu hg19 7 100856126 100856126 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . PLOD3 NM_001084 exon8 c.877delC p.Q293fs . . 52.0 11.0 52.0 0.0 . 79 . . Pindel TNXB 7148 hgsc.bcm.edu hg19 6 32029263 32029263 + Frame_Shift_Del DEL C C - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TNXB NM_019105 exon21 c.7404delC p.G2468fs . . 198.0 30.0 131.0 0.0 . 553 . . Pindel TMEM232 642987 hgsc.bcm.edu hg19 5 110003053 110003054 + Frame_Shift_Ins INS - - A novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . TMEM232 NM_001039763 exon2 c.1_2insT p.M1fs . . 237.0 63.0 263.0 0.0 . 57 . . Pindel DNAH14 127602 hgsc.bcm.edu hg19 1 225211543 225211543 + Frame_Shift_Del DEL A A - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . DNAH14 NM_001145154 exon11 c.1333delG p.E445fs . . 250.0 23.0 224.0 0.0 . 300 . . Pindel IQCC 55721 hgsc.bcm.edu hg19 1 32673443 32673443 + Frame_Shift_Del DEL G G - novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 .,1 IQCC NM_001160042 exon5 c.1400delT p.L467fs . . 314.0 83.0 361.0 0.0 . 46 . . Pindel MMEL1 79258 hgsc.bcm.edu hg19 1 2560839 2560840 + Frame_Shift_Ins INS - - C novel TCGA-4R-AA8I-01A-11D-A382-10 TCGA-4R-AA8I-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8dba9681-e78c-40e4-a7d9-b031da622799 9ab82c20-518e-4e2e-9744-d813c8ecf079 . MMEL1 NM_033467 exon2 c.85_86insG p.L29fs . . 246.0 63.0 258.0 0.0 . 64 . . Pindel