Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SPEN	23013	hgsc.bcm.edu	hg19	1	16263693	16263693	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SPEN	NM_015001	exon12	c.T10062G	p.P3354P	GCCTCCTCAGCCT	.	40.0	19.0	79.0	0.0	.	374	.	.	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46499912	46499912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	MAST2	NM_015112	exon28	c.G3842A	p.R1281Q	GCTACCGGGTGAC	.	46.0	31.0	66.0	0.0	.	136	.	.	Atlas-SNP
SELENBP1	8991	hgsc.bcm.edu	hg19	1	151337513	151337513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SELENBP1	NM_001258289	exon11	c.G1271A	p.R424Q	GCCACCCGTTTTC	.	99.0	25.0	73.0	0.0	.	44	.	.	Atlas-SNP
PRR9	574414	hgsc.bcm.edu	hg19	1	153190633	153190633	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	PRR9	NM_001195571	exon2	c.G13T	p.E5X	TTCAGTGAGCAGC	.	162.0	101.0	93.0	0.0	.	1	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158648224	158648224	+	Missense_Mutation	SNP	A	A	G	rs121918634		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SPTA1	NM_003126	exon6	c.T779C	p.L260P	TTGGACAGAGCTT	.	109.0	36.0	55.0	0.0	.	720	.	.	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	172356496	172356496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	DNM3	NM_015569	exon19	c.G2282T	p.R761L	ACTCTCGCAGGTA	.	148.0	45.0	80.0	0.0	.	85	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204913476	204913476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	NFASC	NM_015090	exon3	c.T33G	p.H11Q	GGTCCATGCAGCC	.	83.0	49.0	63.0	0.0	.	396	.	.	Atlas-SNP
CNIH4	29097	hgsc.bcm.edu	hg19	1	224559054	224559054	+	Silent	SNP	G	G	A	rs143487399	alternate_allele	TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CNIH4	NM_014184	exon4	c.G321A	p.L107L	GCAGCTGAAGTCA	.	171.0	46.0	107.0	0.0	.	17	.	G|1.000;C|0.000	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237947690	237947690	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	RYR2,NS,carcinoma,+1,1	RYR2	NM_001035	exon90	c.G12678A	p.P4226P	GAGGCCGGAAGAG	.	181.0	98.0	100.0	0.0	.	1273	.	.	Atlas-SNP
EIF2B4	8890	hgsc.bcm.edu	hg19	2	27587708	27587708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	EIF2B4	NM_172195	exon11	c.C1309T	p.R437W	CTACCCGTGACAT	.	145.0	8.0	107.0	0.0	.	48	.	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40387905	40387905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SLC8A1	NM_021097	exon8	c.G2269T	p.G757W	ACTCACCAGCACT	.	74.0	25.0	49.0	0.0	.	221	.	.	Atlas-SNP
ELMOD3	84173	hgsc.bcm.edu	hg19	2	85590252	85590252	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ELMOD3	NM_001135022	exon6	c.G162A	p.Q54Q	TCTCCAGGCTCTG	.	75.0	37.0	68.0	0.0	.	53	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160289825	160289825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	BAZ2B	NM_013450	exon9	c.C1343G	p.S448W	CTCTTCGATGACT	.	54.0	17.0	64.0	0.0	.	196	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170058284	170058284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	LRP2	NM_004525	exon44	c.G8306C	p.G2769A	TCACTGCCATCAC	.	46.0	19.0	44.0	0.0	.	751	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179718305	179718305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	CCDC141_ENST00000420890,mucosal,malignant_melanoma,0,4	CCDC141	NM_173648	exon20	c.G3107A	p.G1036E	TATTTTCCAACTC	.	104.0	37.0	55.0	0.0	.	362	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210778536	210778536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	UNC80	NM_032504	exon30	c.T4703C	p.L1568S	TGAGCTTGTCGCC	.	146.0	59.0	126.0	0.0	.	280	.	.	Atlas-SNP
THUMPD3	25917	hgsc.bcm.edu	hg19	3	9412987	9412987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	THUMPD3	NM_001114092	exon4	c.G574A	p.A192T	AATCCAGCCATCA	.	222.0	75.0	186.0	0.0	.	46	.	.	Atlas-SNP
OGG1	4968	hgsc.bcm.edu	hg19	3	9807539	9807539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	OGG1	NM_016821	exon7	c.T995A	p.L332H	GTCCTCTTATCTT	.	78.0	34.0	63.0	0.0	.	57	.	.	Atlas-SNP
HDAC11	79885	hgsc.bcm.edu	hg19	3	13546008	13546008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	HDAC11	NM_024827	exon10	c.G869A	p.R290H	TGGTCCGTGGCCG	.	51.0	22.0	71.0	0.0	.	39	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51297607	51297607	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	DOCK3	NM_004947	exon23	c.G2205A	p.K735K	TTTCAAGTTCATT	.	87.0	36.0	68.0	0.0	.	397	.	.	Atlas-SNP
ZDHHC23	254887	hgsc.bcm.edu	hg19	3	113672983	113672983	+	Missense_Mutation	SNP	A	A	T	rs370935137	alternate_allele	TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZDHHC23	NM_173570	exon3	c.A598T	p.S200C	CCAGCAAGCGGTG	.	164.0	56.0	145.0	0.0	.	38	.	.	Atlas-SNP
FXR1	8087	hgsc.bcm.edu	hg19	3	180666144	180666144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	FXR1	NM_001013438	exon5	c.A280G	p.I94V	TATGTCATTGAAT	.	99.0	40.0	80.0	0.0	.	75	.	.	Atlas-SNP
NPFFR2	10886	hgsc.bcm.edu	hg19	4	72994622	72994622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	NPFFR2	NM_004885	exon2	c.A620G	p.D207G	TGCTGGACAATAT	.	70.0	27.0	70.0	0.0	.	98	.	.	Atlas-SNP
COQ2	27235	hgsc.bcm.edu	hg19	4	84205844	84205844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	COQ2	NM_015697	exon1	c.G224A	p.R75Q	CGGCCCCGCCAGC	.	550.0	249.0	502.0	0.0	.	22	.	.	Atlas-SNP
TET2	54790	hgsc.bcm.edu	hg19	4	106164733	106164733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TET2	NM_001127208	exon6	c.C3601T	p.R1201C	GTGGTTCGCAGAA	.	64.0	20.0	73.0	0.0	.	1762	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187630712	187630712	+	Silent	SNP	G	G	A	rs373265178		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	FAT1,colon,carcinoma,0,1	FAT1	NM_005245	exon2	c.C270T	p.L90L	GTCTCCGAGAATG	.	96.0	38.0	81.0	0.0	.	500	.	.	Atlas-SNP
SNCB	6620	hgsc.bcm.edu	hg19	5	176056620	176056620	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SNCB	NM_001001502	exon3	c.G36A	p.K12K	GCCCTCCTTGGCC	.	147.0	63.0	147.0	0.0	.	20	.	.	Atlas-SNP
ZFP2	80108	hgsc.bcm.edu	hg19	5	178358992	178358992	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZFP2	NM_030613	exon5	c.C678T	p.S226S	CCAAAGCATGAAT	.	98.0	42.0	70.0	0.0	.	70	.	.	Atlas-SNP
SRSF3	6428	hgsc.bcm.edu	hg19	6	36564715	36564715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SRSF3	NM_003017	exon2	c.C176A	p.A59E	GAGATGCAGCTGA	.	96.0	35.0	87.0	0.0	.	28	.	.	Atlas-SNP
TREML1	340205	hgsc.bcm.edu	hg19	6	41121748	41121748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TREML1	NM_178174	exon2	c.C124G	p.L42V	CCTGGAGCCTGTA	.	93.0	41.0	81.0	0.0	.	20	.	.	Atlas-SNP
FOXP4	116113	hgsc.bcm.edu	hg19	6	41558024	41558024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	FOXP4	NM_001012426	exon12	c.A1373G	p.H458R	AGAATCATGAGTT	.	108.0	36.0	102.0	0.0	.	83	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	30.0	5.0	54.0	0.0	.	58	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38543259	38543259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	AMPH	NM_139316	exon3	c.G196T	p.A66S	TGATTGCTGCTAA	.	89.0	35.0	53.0	0.0	.	157	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99097503	99097503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZNF394	NM_032164	exon1	c.T214G	p.Y72D	CCTGGTAACGCAG	.	37.0	13.0	57.0	0.0	.	48	.	.	Atlas-SNP
ALKBH4	54784	hgsc.bcm.edu	hg19	7	102105175	102105175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ALKBH4	NM_017621	exon1	c.G109A	p.E37K	GCAGCTCCCAGGG	.	144.0	58.0	125.0	0.0	.	21	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142626585	142626585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TRPV5	NM_019841	exon4	c.G425A	p.S142N	GAGACACTGGCCC	.	85.0	36.0	88.0	0.0	.	164	.	.	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	hg19	8	11189172	11189172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	.	NM_054028	exon1	c.G557T	p.G186V	CCACAGGTGTCTA	.	30.0	19.0	50.0	0.0	.	.	.	.	Atlas-SNP
NKX3-1	4824	hgsc.bcm.edu	hg19	8	23538754	23538754	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	NKX3-1	NM_006167	exon2	c.T685A	p.W229R	GGCTCCAGCTGCC	.	41.0	29.0	94.0	0.0	.	25	.	.	Atlas-SNP
WDYHV1	55093	hgsc.bcm.edu	hg19	8	124449502	124449502	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	WDYHV1	NM_018024	exon5	c.C436A	p.R146R	TCTGACCGATCTC	.	73.0	31.0	57.0	0.0	.	30	.	.	Atlas-SNP
HSDL2	84263	hgsc.bcm.edu	hg19	9	115179158	115179158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	HSDL2	NM_032303	exon5	c.G433T	p.V145F	AGCAAAGTTGCTC	.	83.0	39.0	44.0	0.0	.	24	.	.	Atlas-SNP
CIZ1	25792	hgsc.bcm.edu	hg19	9	130943066	130943066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CIZ1	NM_001257975	exon6	c.G706T	p.E236X	TGTCTTCCACAGG	.	25.0	10.0	35.0	0.0	.	75	.	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18270325	18270325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SLC39A12	NM_152725	exon6	c.A1009T	p.S337C	CAAATGAGTCCAG	.	135.0	44.0	130.0	0.0	.	181	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49658574	49658574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ARHGAP22	NM_001256024	exon9	c.G1646A	p.R549H	CTGGCGCGGCAGG	.	47.0	21.0	53.0	0.0	.	94	.	.	Atlas-SNP
CHAT	1103	hgsc.bcm.edu	hg19	10	50872913	50872913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CHAT	NM_020549	exon15	c.C2068A	p.L690I	ACCATCCTTTTCT	.	95.0	31.0	99.0	0.0	.	162	.	.	Atlas-SNP
PLEKHA1	59338	hgsc.bcm.edu	hg19	10	124189324	124189324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	PLEKHA1	NM_021622	exon12	c.C1085T	p.S362F	CTGTCTCTCCAAG	.	104.0	40.0	67.0	0.0	.	33	.	.	Atlas-SNP
ZNF214	7761	hgsc.bcm.edu	hg19	11	7022371	7022371	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZNF214	NM_013249	exon3	c.A543G	p.E181E	CTTCTGTTCTTTT	.	80.0	29.0	53.0	0.0	.	65	.	.	Atlas-SNP
UEVLD	55293	hgsc.bcm.edu	hg19	11	18553955	18553955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	UEVLD	NM_001040697	exon12	c.A1328G	p.K443R	GTGGTTTTGATAA	.	108.0	40.0	71.0	0.0	.	58	.	.	Atlas-SNP
LGR4	55366	hgsc.bcm.edu	hg19	11	27389741	27389741	+	Silent	SNP	G	G	A	rs145204350		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	LGR4	NM_018490	exon18	c.C2529T	p.Y843Y	ACAGTCGTAGTAG	.	76.0	30.0	58.0	0.0	.	87	.	G|1.000;A|0.000	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	rs121913530	bycluster	TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	KRAS_ENST00000256078,NS,adenocarcinoma,+1,3	KRAS	NM_004985	exon2	c.G34T	p.G12C	CGCCACCAGCTCC	.	150.0	53.0	137.0	0.0	.	30930	.	.	Atlas-SNP
ATP2A2	488	hgsc.bcm.edu	hg19	12	110719613	110719613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ATP2A2	NM_001681	exon1	c.A19C	p.K7Q	CACACCAAGACGG	.	30.0	12.0	50.0	0.0	.	78	.	.	Atlas-SNP
BRAP	8315	hgsc.bcm.edu	hg19	12	112119568	112119568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	BRAP	NM_006768	exon3	c.C316T	p.H106Y	TACTGTGATCTTT	.	211.0	91.0	173.0	0.0	.	42	.	.	Atlas-SNP
CCDC122	160857	hgsc.bcm.edu	hg19	13	44411471	44411471	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CCDC122	NM_144974	exon7	c.A767T	p.Q256L	AATTGTTGAATGT	.	67.0	27.0	50.0	0.0	.	21	.	.	Atlas-SNP
VPS36	51028	hgsc.bcm.edu	hg19	13	53010479	53010479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	VPS36	NM_016075	exon4	c.G297T	p.Q99H	ACTACTCTGGAAT	.	161.0	67.0	154.0	0.0	.	38	.	.	Atlas-SNP
SEC23A	10484	hgsc.bcm.edu	hg19	14	39560758	39560758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	SEC23A	NM_006364	exon5	c.C526T	p.H176Y	GTTCATGAACCTG	.	102.0	44.0	83.0	0.0	.	73	.	.	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	hg19	14	65054887	65054887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	.	NM_172365	exon11	c.C956T	p.T319I	TGTCTACTCTGCT	.	78.0	41.0	65.0	0.0	.	.	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68265207	68265207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZFYVE26	NM_015346	exon11	c.C1772G	p.P591R	GGCTCTGGGTGAA	.	107.0	42.0	81.0	0.0	.	223	.	.	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	hg19	14	89038562	89038562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZC3H14	NM_001160104	exon5	c.A424G	p.N142D	ACCACAAATGTCA	.	231.0	95.0	186.0	0.0	.	71	.	.	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	hg19	15	31197246	31197246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	FAN1	NM_001146095	exon2	c.C380A	p.P127H	TCAGTCCCTACTT	.	124.0	49.0	110.0	0.0	.	77	.	.	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75501057	75501057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	C15orf39	NM_015492	exon2	c.C2668T	p.P890S	GCCCTGCCAGGCT	.	40.0	20.0	23.0	0.0	.	64	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	hg19	15	85326095	85326095	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ZNF592	NM_014630	exon4	c.G189T	p.V63V	CGATGTGCCGGCC	.	86.0	31.0	77.0	0.0	.	95	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396147	396147	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	AXIN1	NM_181050	exon3	c.878+1G>C	.	GACTCACCTGAAC	.	18.0	17.0	49.0	0.0	.	290	.	.	Atlas-SNP
STUB1	10273	hgsc.bcm.edu	hg19	16	731813	731813	+	Missense_Mutation	SNP	G	G	A	rs145094142		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	STUB1	NM_005861	exon4	c.G545A	p.R182Q	GCCAGCGAAACCA	.	91.0	69.0	155.0	0.0	.	26	.	G|1.000;A|0.000	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2141435	2141435	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	PKD1	NM_001009944	exon42	c.C11701T	p.L3901L	TGAGCAGAGGCAG	.	21.0	13.0	55.0	0.0	.	184	.	.	Atlas-SNP
CCDC79	283847	hgsc.bcm.edu	hg19	16	66811151	66811151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CCDC79	NM_001136505	exon11	c.A940C	p.K314Q	TAAATTTTTCTCC	.	29.0	15.0	67.0	0.0	.	32	.	.	Atlas-SNP
C16orf86	388284	hgsc.bcm.edu	hg19	16	67702330	67702330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	C16orf86	NM_001012984	exon4	c.C781T	p.H261Y	CCCACCCATGCCC	.	35.0	23.0	53.0	0.0	.	20	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7722313	7722313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	DNAH2	NM_020877	exon70	c.G10747A	p.A3583T	ATCACAGCCACAG	.	52.0	24.0	47.0	0.0	.	498	.	.	Atlas-SNP
TAOK1	57551	hgsc.bcm.edu	hg19	17	27778638	27778638	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TAOK1	NM_025142	exon2	c.A72C	p.P24P	AGATCCAGAGAAG	.	50.0	22.0	32.0	0.0	.	151	.	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28380584	28380584	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	EFCAB5	NM_198529	exon10	c.C1612G	p.L538V	CAAGAACTGTACA	.	148.0	58.0	98.0	0.0	.	122	.	.	Atlas-SNP
ATP6V0A1	535	hgsc.bcm.edu	hg19	17	40620078	40620078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ATP6V0A1	NM_001130020	exon4	c.G247C	p.G83R	GACACCGGTGAAA	.	331.0	120.0	277.0	0.0	.	67	.	.	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	hg19	17	61615955	61615955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	KCNH6	NM_030779	exon8	c.C1886T	p.S629F	TGCTCTCCACCCT	.	140.0	59.0	134.0	0.0	.	122	.	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	hg19	18	70417298	70417298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	NETO1	NM_001201465	exon9	c.C1540T	p.R514W	CTGACCGCTGGAC	.	26.0	11.0	25.0	0.0	.	178	.	.	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	hg19	18	77474841	77474841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CTDP1	NM_004715	exon8	c.A1381T	p.S461C	GAGAGCAGCAGTG	.	127.0	44.0	119.0	0.0	.	67	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8160952	8160952	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	FBN3	NM_032447	exon44	c.G5552C	p.C1851S	CGGTCACACTCGT	.	104.0	40.0	72.0	0.0	.	300	.	.	Atlas-SNP
EPOR	2057	hgsc.bcm.edu	hg19	19	11491864	11491864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	EPOR	NM_000121	exon5	c.A607T	p.T203S	ACTCGGTGCGGCC	.	109.0	44.0	101.0	0.0	.	26	.	.	Atlas-SNP
TIMM50	92609	hgsc.bcm.edu	hg19	19	39972548	39972548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TIMM50	NM_001001563	exon2	c.G443A	p.S148N	GCGGGAGCACTAA	.	49.0	17.0	55.0	0.0	.	37	.	.	Atlas-SNP
PSG1	5669	hgsc.bcm.edu	hg19	19	43382260	43382260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	PSG1	NM_001184826	exon2	c.A235T	p.I79F	ATGTAATGTAATG	.	83.0	40.0	69.0	0.0	.	196	.	.	Atlas-SNP
ASXL1	171023	hgsc.bcm.edu	hg19	20	31021697	31021697	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ASXL1	NM_015338	exon11	c.G1696T	p.E566X	AAAGAGGAGCCCA	.	89.0	33.0	94.0	0.0	.	1114	.	.	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49232571	49232571	+	Missense_Mutation	SNP	G	G	A	rs147229572		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	FAM65C,NS,carcinoma,0,3	FAM65C	NM_080829	exon4	c.C304T	p.R102C	TGTGGCGTCCAGA	.	51.0	23.0	61.0	0.0	.	87	.	G|1.000;A|0.000	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10906915	10906915	+	Missense_Mutation	SNP	C	C	G	rs169758	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	TPTE	NM_199261	exon24	c.G1646C	p.G549A	TCGGATCCAGCTA	.	168.0	38.0	124.0	0.0	.	513	.	C|0.947;T|0.053	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7588	7588	+	Silent	SNP	G	G	A	rs199474825	alternate_allele	TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	.	ENST00000361739	exon1	c.G3A	p.M1M	CTTAATGGCACAT	.	37.0	23.0	7.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12991	12991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	.	ENST00000361567	exon1	c.G655A	p.A219T	CTCCTAGCAGCAG	.	41.0	12.0	6.0	0.0	.	.	.	.	Atlas-SNP
ISYNA1	51477	hgsc.bcm.edu	hg19	19	18547823	18547824	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ISYNA1	NM_016368	exon4	c.375_376del	p.125_126del	.	.	128.0	54.0	106.0	0.0	.	31	.	.	Atlas-Indel,Pindel
ASCL1	429	hgsc.bcm.edu	hg19	12	103352142	103352170	+	Frame_Shift_Del	DEL	CGCAGCCGCCGCAGCGGCAGCGCAGAGCG	CGCAGCCGCCGCAGCGGCAGCGCAGAGCG	-	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	CGCAGCCGCCGCAGCGGCAGCGCAGAGCG	CGCAGCCGCCGCAGCGGCAGCGCAGAGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	ASCL1	NM_004316	exon1	c.119_147del	p.40_49del	.	.	40.0	18.0	46.0	0.0	.	16	.	.	Atlas-INDEL
CCDC152	100129792	hgsc.bcm.edu	hg19	5	42799777	42799779	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	CCDC152	NM_001134848	exon9	c.658_660del	p.220_220del	.	.	193.0	72.0	146.0	0.0	.	10	.	.	Atlas-Indel,Pindel
IRF7	3665	hgsc.bcm.edu	hg19	11	613275	613275	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Y-A9H7-01A-11D-A38X-10	TCGA-2Y-A9H7-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e447e430-664c-4a56-9017-620aef1f0ffb	b2219bf0-50ab-4c4d-a22d-6b2a5c4bb365	.	IRF7	NM_004031	exon7	c.1208delC	p.S403fs	.	.	97.0	31.0	95.0	0.0	.	23	.	.	Atlas-Indel,Pindel