Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ATAD3B	83858	hgsc.bcm.edu	hg19	1	1425945	1425945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	ATAD3B,NS,carcinoma,0,1	ATAD3B	NM_031921	exon15	c.G1508T	p.R503L	CCAGGCGCCTGAA	.	272.0	110.0	227.0	0.0	.	68	.	.	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	hg19	1	12919905	12919905	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PRAMEF2	NM_023014	exon3	c.G645T	p.T215T	CAACACGTGCTGG	.	143.0	32.0	120.0	0.0	.	85	.	.	Atlas-SNP
AGO1	26523	hgsc.bcm.edu	hg19	1	36359333	36359333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	.	NM_012199	exon5	c.G571T	p.G191W	CCGCTGGGGGGTG	.	43.0	17.0	33.0	0.0	.	.	.	.	Atlas-SNP
ELAVL4	1996	hgsc.bcm.edu	hg19	1	50572025	50572025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ELAVL4	NM_001144775	exon1	c.G20A	p.R7K	TTTTAAGGGAAAT	.	61.0	31.0	57.0	0.0	.	124	.	.	Atlas-SNP
HENMT1	113802	hgsc.bcm.edu	hg19	1	109191343	109191343	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	HENMT1	NM_144584	exon8	c.C1027T	p.L343L	TCTGCAGAGGTAC	.	177.0	84.0	143.0	0.0	.	38	.	.	Atlas-SNP
BCL9	607	hgsc.bcm.edu	hg19	1	147096555	147096555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	BCL9	NM_004326	exon10	c.C4076A	p.P1359H	TGATTCCTGGCAA	.	83.0	25.0	73.0	0.0	.	150	.	.	Atlas-SNP
RFX5	5993	hgsc.bcm.edu	hg19	1	151315600	151315600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	RFX5	NM_000449	exon11	c.C913T	p.R305W	TCTTCCGCTCTCC	.	54.0	11.0	62.0	0.0	.	69	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181726159	181726159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CACNA1E	NM_001205293	exon30	c.T4226C	p.V1409A	TTGTGGTCTTCCC	.	103.0	21.0	118.0	0.0	.	778	.	.	Atlas-SNP
LHX9	56956	hgsc.bcm.edu	hg19	1	197898219	197898219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	LHX9	NM_020204	exon5	c.C1024A	p.L342I	ACGTCGCTTCCGG	.	203.0	121.0	170.0	0.0	.	144	.	.	Atlas-SNP
LAD1	3898	hgsc.bcm.edu	hg19	1	201355885	201355885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	LAD1	NM_005558	exon3	c.A604G	p.I202V	CAGAGATGGAGGT	.	76.0	30.0	80.0	0.0	.	42	.	.	Atlas-SNP
SOX11	6664	hgsc.bcm.edu	hg19	2	5833474	5833474	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	SOX11	NM_003108	exon1	c.C621T	p.G207G	GAGCGGCTCGGGC	.	23.0	14.0	9.0	0.0	.	69	.	.	Atlas-SNP
PPP1CB	5500	hgsc.bcm.edu	hg19	2	28975008	28975008	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PPP1CB	NM_206876	exon2	c.G18T	p.L6L	GGAGCTGAACGTG	.	267.0	175.0	164.0	0.0	.	29	.	.	Atlas-SNP
IWS1	55677	hgsc.bcm.edu	hg19	2	128244217	128244217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	IWS1	NM_017969	exon13	c.G2240T	p.G747V	CAGAATCCAGGAT	.	77.0	23.0	87.0	0.0	.	61	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179632561	179632561	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TTN	NM_001267550	exon40	c.A9396G	p.G3132G	GTTGCCTCCTGCC	.	75.0	20.0	82.0	0.0	.	18412	.	.	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226447694	226447694	+	Missense_Mutation	SNP	G	G	T	rs201097764	bycluster;by1000genomes;alternate_allele	TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	.	NM_020864	exon4	c.G1561T	p.G521C	TCCTCCGGCCGCA	.	102.0	33.0	118.0	0.0	.	.	.	G|0.999;A|0.001	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230672462	230672462	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TRIP12	NM_004238	exon16	c.T2314A	p.W772R	GATGCCAGAGGCC	.	81.0	25.0	77.0	0.0	.	207	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	hg19	3	10083389	10083389	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FANCD2	NM_001018115	exon10	c.T778C	p.L260L	TTCCTATTGAAGG	.	206.0	64.0	236.0	0.0	.	253	.	.	Atlas-SNP
ARMC8	25852	hgsc.bcm.edu	hg19	3	138009428	138009428	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ARMC8	NM_015396	exon22	c.C1893A	p.I631I	GGGCATCGTAGAT	.	124.0	46.0	98.0	0.0	.	79	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	hg19	3	167035353	167035353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ZBBX	NM_024687	exon13	c.C1016T	p.P339L	GTATCTGGTAGCA	.	174.0	58.0	89.0	0.0	.	299	.	.	Atlas-SNP
DGKQ	1609	hgsc.bcm.edu	hg19	4	955623	955623	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	DGKQ	NM_001347	exon21	c.2316-1G>A	.	TGCAGCCTGCAGG	.	31.0	10.0	37.0	0.0	.	29	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3241612	3241612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	HTT	NM_002111	exon67	c.G9255C	p.Q3085H	GGAGCAGGTGGAC	.	77.0	14.0	84.0	0.0	.	221	.	.	Atlas-SNP
HOPX	84525	hgsc.bcm.edu	hg19	4	57522168	57522168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	HOPX	NM_032495	exon3	c.C53T	p.T18I	GACATGGTCCCTG	.	46.0	12.0	39.0	0.0	.	28	.	.	Atlas-SNP
ANXA5	308	hgsc.bcm.edu	hg19	4	122602881	122602881	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ANXA5	NM_001154	exon6	c.T339C	p.I113I	AGCAATAATTTCT	.	90.0	25.0	57.0	0.0	.	29	.	.	Atlas-SNP
NPY1R	4886	hgsc.bcm.edu	hg19	4	164246911	164246911	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	NPY1R	NM_000909	exon4	c.700-1G>C	.	ATATATCTATGGA	.	34.0	16.0	29.0	0.0	.	72	.	.	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	hg19	4	190878551	190878551	+	Splice_Site	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	FRG1,NS,malignant_melanoma,0,1	FRG1	NM_004477	exon6	c.433-2A>T	.	TCACTTAGGGGAA	.	84.0	4.0	83.0	0.0	.	76	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5463510	5463510	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	KIAA0947	NM_015325	exon13	c.C4063G	p.Q1355E	GGCAGGCAAACCG	.	98.0	16.0	86.0	0.0	.	301	.	.	Atlas-SNP
MARVELD2	153562	hgsc.bcm.edu	hg19	5	68728859	68728859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	MARVELD2	NM_001038603	exon5	c.G1442A	p.R481K	TCCTGAGGAAGTT	.	150.0	57.0	80.0	0.0	.	49	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112179485	112179485	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	APC	NM_001127510	exon17	c.G8194C	p.D2732H	GCCCCTGACCAAA	.	123.0	28.0	108.0	0.0	.	4158	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127645697	127645697	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FBN2	NM_001999	exon40	c.C5178T	p.V1726V	TCCATTGACCTGC	.	248.0	111.0	228.0	0.0	.	858	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140264043	140264043	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PCDHA13	NM_031865	exon1	c.C2190A	p.G730G	CGAGGGCGCGTGC	.	207.0	42.0	156.0	0.0	.	213	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160059337	160059337	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ATP10B	NM_025153	exon13	c.T1419C	p.D473D	TTCACCATCTGAG	.	89.0	18.0	65.0	0.0	.	201	.	.	Atlas-SNP
CCNG1	900	hgsc.bcm.edu	hg19	5	162866373	162866373	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CCNG1	NM_199246	exon3	c.T111C	p.I37I	ACTAATTGAGTCT	.	163.0	77.0	107.0	0.0	.	28	.	.	Atlas-SNP
FAM196B	100131897	hgsc.bcm.edu	hg19	5	169310696	169310696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FAM196B	NM_001129891	exon2	c.A207T	p.Q69H	GGTTGCTTGAGTC	.	92.0	23.0	55.0	0.0	.	28	.	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327864	16327864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.,1	ATXN1	NM_001128164	exon7	c.C678G	p.H226Q	GCTGAGGTGCTGC	.	63.0	4.0	55.0	2.0	.	117	.	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327924	16327924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ATXN1	NM_001128164	exon7	c.G618T	p.Q206H	CTGCTGCTGCTGC	.	51.0	6.0	32.0	0.0	.	117	.	.	Atlas-SNP
ZNF391	346157	hgsc.bcm.edu	hg19	6	27368930	27368930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ZNF391	NM_001076781	exon3	c.A781T	p.I261F	AGTTGGATCTCAT	.	192.0	42.0	145.0	0.0	.	90	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29080176	29080176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	OR2J3	NM_001005216	exon1	c.C509T	p.P170L	GGGTACCTCTGTG	.	125.0	57.0	128.0	0.0	.	53	.	.	Atlas-SNP
RXRB	6257	hgsc.bcm.edu	hg19	6	33164330	33164330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	RXRB	NM_021976	exon5	c.G874T	p.A292S	CCCCAGCCCCCTC	.	130.0	60.0	137.0	0.0	.	34	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84317435	84317435	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	SNAP91	NM_001242792	exon12	c.T1005A	p.S335S	AGCCGCAGATGCA	.	85.0	65.0	125.0	0.0	.	199	.	.	Atlas-SNP
SLC16A10	117247	hgsc.bcm.edu	hg19	6	111543223	111543223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	SLC16A10	NM_018593	exon6	c.C1333A	p.L445M	GACAAACTGGGCT	.	105.0	12.0	129.0	0.0	.	33	.	.	Atlas-SNP
FAM184A	79632	hgsc.bcm.edu	hg19	6	119296226	119296226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FAM184A	NM_024581	exon13	c.A2731G	p.I911V	TGAGAATTTCTTT	.	60.0	21.0	64.0	0.0	.	109	.	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	hg19	6	147049813	147049813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ADGB	NM_024694	exon20	c.A2456G	p.D819G	TGAAGGATCTGCA	.	61.0	26.0	89.0	0.0	.	93	.	.	Atlas-SNP
QKI	9444	hgsc.bcm.edu	hg19	6	163984603	163984603	+	Silent	SNP	C	C	T	rs368366293	alternate_allele	TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	QKI	NM_206853	exon6	c.C786T	p.V262V	CGCTGTCATGCCA	.	36.0	27.0	63.0	0.0	.	80	.	.	Atlas-SNP
GRB10	2887	hgsc.bcm.edu	hg19	7	50680499	50680499	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	GRB10	NM_005311	exon10	c.T1133A	p.L378X	CAGAGCAACCTCA	.	93.0	42.0	91.0	0.0	.	155	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82584100	82584100	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PCLO	NM_014510	exon5	c.A6169T	p.K2057X	GTAGTTTCCTTTC	.	98.0	15.0	67.0	0.0	.	1506	.	.	Atlas-SNP
MDFIC	29969	hgsc.bcm.edu	hg19	7	114563013	114563013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	MDFIC	NM_001166346	exon2	c.C252G	p.H84Q	ACCTCACAGCCCT	.	88.0	32.0	80.0	0.0	.	30	.	.	Atlas-SNP
WDR91	29062	hgsc.bcm.edu	hg19	7	134896232	134896232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	WDR91	NM_014149	exon1	c.C23T	p.T8I	TCGTCAGTGCGCT	.	183.0	84.0	134.0	0.0	.	82	.	.	Atlas-SNP
FAM131B	9715	hgsc.bcm.edu	hg19	7	143053918	143053918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FAM131B	NM_001031690	exon7	c.T808G	p.S270A	ATCCTGAAGCTGG	.	72.0	19.0	71.0	0.0	.	104	.	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	hg19	7	154561209	154561209	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	DPP6	NM_130797	exon9	c.T966C	p.R322R	TTCCCGTGTCCCC	.	104.0	18.0	100.0	0.0	.	383	.	.	Atlas-SNP
MED30	90390	hgsc.bcm.edu	hg19	8	118533157	118533157	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	MED30,NS,carcinoma,0,2	MED30	NM_080651	exon1	c.G42T	p.G14G	GCCCGGGCCCTTC	.	122.0	63.0	120.0	0.0	.	15	.	.	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	hg19	9	130482363	130482363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TTC16	NM_144965	exon5	c.T433C	p.C145R	GGACAATGCCTTT	.	45.0	5.0	42.0	0.0	.	55	.	.	Atlas-SNP
ZNF365	22891	hgsc.bcm.edu	hg19	10	64159446	64159446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ZNF365	NM_014951	exon5	c.C1122A	p.C374X	CCTCTGCAGACCT	.	133.0	27.0	111.0	0.0	.	174	.	.	Atlas-SNP
MCMBP	79892	hgsc.bcm.edu	hg19	10	121616948	121616948	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	MCMBP,NS,carcinoma,0,1	MCMBP	NM_024834	exon5	c.C331T	p.Q111X	CTTGTTGAGGCTG	.	108.0	62.0	102.0	0.0	.	49	.	.	Atlas-SNP
OR4X2	119764	hgsc.bcm.edu	hg19	11	48266850	48266850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	OR4X2	NM_001004727	exon1	c.C195A	p.Y65X	CTGCTACTCCTCC	.	115.0	21.0	96.0	0.0	.	65	.	.	Atlas-SNP
CREBZF	58487	hgsc.bcm.edu	hg19	11	85375448	85375448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CREBZF	NM_001039618	exon1	c.C472A	p.R158S	AGAAGCGCTGCAT	.	119.0	5.0	85.0	0.0	.	26	.	.	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	hg19	11	85411633	85411633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	SYTL2	NM_206927	exon10	c.G3292T	p.A1098S	CTGGTGCTGTCTG	.	69.0	33.0	58.0	0.0	.	231	.	.	Atlas-SNP
TMPRSS4	56649	hgsc.bcm.edu	hg19	11	117973865	117973865	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TMPRSS4	NM_019894	exon4	c.C207T	p.H69H	TCTCCACTTCATC	.	101.0	19.0	76.0	0.0	.	46	.	.	Atlas-SNP
GPR19	2842	hgsc.bcm.edu	hg19	12	12815252	12815252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	GPR19	NM_006143	exon4	c.G131A	p.S44N	TCCTCACTTAATT	.	149.0	46.0	159.0	0.0	.	47	.	.	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	hg19	12	15747937	15747937	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PTPRO	NM_030667	exon26	c.A3613T	p.I1205F	TTCTGCATCAGTG	.	38.0	16.0	59.0	0.0	.	148	.	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	81719606	81719606	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PPFIA2	NM_001220476	exon21	c.G2592T	p.G864G	GCCTAACCCCAGG	.	85.0	34.0	51.0	0.0	.	207	.	.	Atlas-SNP
B3GNT4	79369	hgsc.bcm.edu	hg19	12	122691554	122691554	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	B3GNT4	NM_030765	exon3	c.C756T	p.P252P	CCTGCCCAACAGG	.	51.0	21.0	55.0	0.0	.	35	.	.	Atlas-SNP
SOX21	11166	hgsc.bcm.edu	hg19	13	95363827	95363827	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	SOX21	NM_007084	exon1	c.T477C	p.A159A	GGCGGCAGCGGCG	.	32.0	16.0	13.0	0.0	.	21	.	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96599334	96599334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	UGGT2	NM_020121	exon15	c.C1634T	p.A545V	TCTTCTGCAATAT	.	321.0	148.0	242.0	0.0	.	127	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33293348	33293348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	AKAP6	NM_004274	exon13	c.A6329T	p.Y2110F	ACTTTTATTCGTA	.	130.0	46.0	100.0	0.0	.	308	.	.	Atlas-SNP
FERMT2	10979	hgsc.bcm.edu	hg19	14	53345391	53345391	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FERMT2	NM_001135000	exon7	c.T872G	p.I291S	TGATTGATTCTGA	.	81.0	39.0	56.0	0.0	.	59	.	.	Atlas-SNP
ADAM20	8748	hgsc.bcm.edu	hg19	14	70990870	70990870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ADAM20	NM_003814	exon2	c.G755C	p.W252S	GTCCACCAGCCCA	.	125.0	57.0	98.0	0.0	.	59	.	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	hg19	14	81251871	81251871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CEP128	NM_152446	exon14	c.G1579T	p.E527X	TCAATTCATCCTT	.	114.0	19.0	72.0	0.0	.	146	.	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	hg19	15	33256458	33256458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	FMN1	NM_001103184	exon5	c.C2319A	p.S773R	ATTTTGGCTTAAA	.	134.0	29.0	92.0	0.0	.	174	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56385627	56385627	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	RFX7	NM_022841	exon9	c.C4299T	p.C1433C	TTCACTGCAAATT	.	69.0	9.0	64.0	0.0	.	170	.	.	Atlas-SNP
APH1B	83464	hgsc.bcm.edu	hg19	15	63571387	63571387	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	APH1B	NM_001145646	exon2	c.G141A	p.L47L	TCTACTGATTTCG	.	104.0	28.0	105.0	0.0	.	27	.	.	Atlas-SNP
GOLGA6B	55889	hgsc.bcm.edu	hg19	15	72955008	72955008	+	Missense_Mutation	SNP	G	G	C	rs71400917		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	GOLGA6B,NS,malignant_melanoma,0,1	GOLGA6B	NM_018652	exon11	c.G1263C	p.E421D	GGAGGAGAGGCTA	.	44.0	3.0	68.0	0.0	.	30	.	G|1.000;|0.000	Atlas-SNP
UBE2Q2	92912	hgsc.bcm.edu	hg19	15	76191767	76191767	+	Splice_Site	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	UBE2Q2,NS,carcinoma,0,1	UBE2Q2	NM_173469	exon13	c.1097-1G>A	.	ATTTCAGGCTGGT	.	15.0	11.0	41.0	0.0	.	26	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27549677	27549677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	GTF3C1	NM_001520	exon3	c.G432T	p.R144S	CCCCCACCTGCAA	.	46.0	14.0	82.0	0.0	.	210	.	.	Atlas-SNP
ALDOC	230	hgsc.bcm.edu	hg19	17	26900924	26900924	+	Silent	SNP	G	G	A	rs369962449		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ALDOC	NM_005165	exon8	c.C828T	p.S276S	TTCTTCGCTCTGA	.	89.0	29.0	85.0	0.0	.	22	.	.	Atlas-SNP
TRIM37	4591	hgsc.bcm.edu	hg19	17	57181690	57181690	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TRIM37	NM_015294	exon2	c.T87A	p.P29P	GCAATGAGGACAC	.	547.0	278.0	253.0	1.0	.	105	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60045496	60045496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	MED13,NS,carcinoma,0,2	MED13	NM_005121	exon18	c.G4091T	p.G1364V	TGAGATCCATAGG	.	512.0	62.0	265.0	2.0	.	181	.	.	Atlas-SNP
RNF157	114804	hgsc.bcm.edu	hg19	17	74151751	74151751	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	RNF157	NM_052916	exon15	c.C1590T	p.D530D	GACGGTGTCAGTG	.	220.0	69.0	108.0	0.0	.	66	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22775123	22775123	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ZNF521	NM_015461	exon6	c.3658+1G>T	.	CACTCACCAATCA	.	47.0	7.0	27.0	0.0	.	269	.	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47566657	47566657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	MYO5B	NM_001080467	exon3	c.C166T	p.R56C	GGTTGCGTTGTAC	.	137.0	34.0	188.0	0.0	.	178	.	.	Atlas-SNP
MKNK2	2872	hgsc.bcm.edu	hg19	19	2042789	2042789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	MKNK2	NM_017572	exon8	c.G574A	p.A192T	CCAAGGCGCTGGC	.	41.0	20.0	44.0	0.0	.	56	.	.	Atlas-SNP
NR2F6	2063	hgsc.bcm.edu	hg19	19	17351535	17351535	+	Missense_Mutation	SNP	G	G	C	rs2288539	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	NR2F6	NM_005234	exon2	c.C318G	p.N106K	GCACTGGTTCCGG	.	86.0	22.0	96.0	0.0	.	18	.	G|0.826;A|0.174	Atlas-SNP
DDX49	54555	hgsc.bcm.edu	hg19	19	19032527	19032527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	DDX49	NM_019070	exon3	c.C295A	p.L99M	CTAGGGCTGAAAG	.	86.0	23.0	122.0	0.0	.	37	.	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	hg19	19	42797243	42797243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CIC	NM_015125	exon15	c.C3605T	p.P1202L	CTGGCCCTGCACC	.	107.0	35.0	139.0	0.0	.	249	.	.	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	hg19	19	51960468	51960468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	SIGLEC8	NM_014442	exon3	c.A751G	p.T251A	TCATGGTCAAGTT	.	46.0	10.0	61.0	0.0	.	130	.	.	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	hg19	19	55670499	55670499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	.	NM_001256714	exon12	c.G1758T	p.E586D	CAGAACCTCTGAG	.	93.0	28.0	129.0	0.0	.	.	.	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	hg19	19	57328390	57328390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PEG3	NM_001146184	exon9	c.C1420A	p.H474N	TAGTATGCATGAT	.	145.0	7.0	151.0	0.0	.	414	.	.	Atlas-SNP
PSMF1	9491	hgsc.bcm.edu	hg19	20	1115886	1115886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PSMF1	NM_006814	exon4	c.C488G	p.A163G	CTACCGCCAGAGA	.	129.0	34.0	91.0	0.0	.	27	.	.	Atlas-SNP
TGM3	7053	hgsc.bcm.edu	hg19	20	2291690	2291690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TGM3	NM_003245	exon4	c.G455C	p.R152T	CTGAGAGAGAAGA	.	138.0	65.0	128.0	0.0	.	105	.	.	Atlas-SNP
VPS16	64601	hgsc.bcm.edu	hg19	20	2843248	2843248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	VPS16	NM_022575	exon12	c.G1095C	p.E365D	GGACGAGTACCTG	.	48.0	25.0	52.0	0.0	.	76	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9560805	9560805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PAK7	NM_177990	exon4	c.T977C	p.M326T	ATGCACATTGTGG	.	105.0	23.0	91.0	0.0	.	194	.	.	Atlas-SNP
PABPC1L	80336	hgsc.bcm.edu	hg19	20	43550238	43550238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PABPC1L	NM_001124756	exon6	c.G742T	p.V248L	CAGGCCGTGGTCC	.	84.0	40.0	94.0	0.0	.	59	.	.	Atlas-SNP
HRH3	11255	hgsc.bcm.edu	hg19	20	60791440	60791440	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	HRH3	NM_007232	exon3	c.C960T	p.L320L	CCTCTTGAGTGAG	.	94.0	38.0	79.0	0.0	.	25	.	.	Atlas-SNP
USP16	10600	hgsc.bcm.edu	hg19	21	30409652	30409652	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	USP16	NM_006447	exon6	c.T504C	p.S168S	AGAGAGTAAGAAT	.	214.0	41.0	158.0	0.0	.	65	.	.	Atlas-SNP
MGAT3	4248	hgsc.bcm.edu	hg19	22	39884130	39884130	+	Missense_Mutation	SNP	G	G	A	rs201303175		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	MGAT3	NM_002409	exon2	c.G778A	p.G260S	ACCAATGGCACCT	.	56.0	8.0	67.0	0.0	.	65	.	G|0.999;A|0.001	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	hg19	X	2947346	2947346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ARSH	NM_001011719	exon8	c.C1258T	p.H420Y	TCCGACCACGAGT	.	175.0	75.0	165.0	0.0	.	72	.	.	Atlas-SNP
CYBB	1536	hgsc.bcm.edu	hg19	X	37668941	37668941	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CYBB	NM_000397	exon12	c.C1583G	p.P528R	AACACCCTAAGTA	.	245.0	43.0	168.0	0.0	.	62	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47030585	47030585	+	Missense_Mutation	SNP	T	T	G	rs377667483		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	RBM10	NM_001204468	exon4	c.T555G	p.D185E	GGAGGATGAGGAG	.	130.0	6.0	106.0	0.0	.	117	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54955556	54955556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TRO	NM_001039705	exon12	c.G2399T	p.S800I	CACACAGCACCAG	.	127.0	45.0	109.0	0.0	.	246	.	.	Atlas-SNP
TBX22	50945	hgsc.bcm.edu	hg19	X	79282319	79282319	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TBX22	NM_016954	exon5	c.C750T	p.S250S	ATTCTCCTTTAAA	.	129.0	59.0	117.0	0.0	.	118	.	.	Atlas-SNP
CD99L2	83692	hgsc.bcm.edu	hg19	X	150067008	150067008	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CD99L2	NM_001242614	exon1	c.C54A	p.T18T	GACCAGGGTGGCC	.	110.0	55.0	65.0	0.0	.	47	.	.	Atlas-SNP
IRAK1	3654	hgsc.bcm.edu	hg19	X	153282005	153282005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	IRAK1	NM_001569	exon9	c.C1119A	p.S373R	GCTCTGGCTGGGG	.	251.0	55.0	196.0	0.0	.	107	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79244125	79244125	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	PRUNE2	NM_015225	exon16	c.9133delC	p.P3045fs	.	.	27.0	15.0	42.0	0.0	.	331	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74283302	74283306	+	Frame_Shift_Del	DEL	AGAGG	AGAGG	-	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	AGAGG	AGAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ALB	NM_000477	exon11	c.1343_1347del	p.448_449del	.	.	212.0	55.0	212.0	0.0	.	132	.	.	Atlas-Indel,Pindel
TEP1	7011	hgsc.bcm.edu	hg19	14	20841220	20841226	+	Frame_Shift_Del	DEL	CTTGATT	CTTGATT	-	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	CTTGATT	CTTGATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	TEP1	NM_007110	exon48	c.6896_6902del	p.2299_2301del	.	.	80.0	27.0	58.0	0.0	.	224	.	.	Atlas-Indel,Pindel
NCOA3	8202	hgsc.bcm.edu	hg19	20	46262325	46262326	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	NCOA3	NM_181659	exon9	c.909_910insT	p.R303fs	.	.	301.0	63.0	234.0	0.0	.	156	.	.	Atlas-Indel,Pindel
ACACA	31	hgsc.bcm.edu	hg19	17	35454834	35454840	+	Frame_Shift_Del	DEL	ATGGTAA	ATGGTAA	-	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	ATGGTAA	ATGGTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	ACACA	NM_198834	exon53	c.6646_6652del	p.2216_2218del	.	.	127.0	22.0	124.0	0.0	.	395	.	.	Atlas-Indel,Pindel
MDGA1	266727	hgsc.bcm.edu	hg19	6	37614119	37614120	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	MDGA1	NM_153487	exon11	c.2079_2080insT	p.I693fs	.	.	64.0	11.0	59.0	0.0	.	104	.	.	Atlas-INDEL
AADAT	51166	hgsc.bcm.edu	hg19	4	170983132	170983140	+	In_Frame_Del	DEL	GGAGCATTA	GGAGCATTA	-	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	GGAGCATTA	GGAGCATTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	AADAT	NM_182662	exon13	c.1140_1148del	p.380_383del	.	.	70.0	13.0	76.0	0.0	.	28	.	.	Pindel
CDH15	1013	hgsc.bcm.edu	hg19	16	89258218	89258218	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	CDH15	NM_004933	exon10	c.1530delG	p.L510fs	.	.	85.0	11.0	89.0	0.0	.	54	.	.	Pindel
HERC1	8925	hgsc.bcm.edu	hg19	15	63926085	63926086	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9GZ-01A-11D-A38X-10	TCGA-2Y-A9GZ-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305468d6-2f54-40f3-b39c-1b9adca1fe5d	4b702138-675a-4fe6-aacd-936c58da3d98	.	HERC1	NM_003922	exon67	c.12655_12656insA	p.L4219fs	.	.	173.0	34.0	231.0	0.0	.	624	.	.	Pindel