Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CYP4A22	284541	hgsc.bcm.edu	hg19	1	47606450	47606450	+	Splice_Site	SNP	A	A	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	CYP4A22	NM_001010969	exon2	c.196-2A>C	.	GTTGACAGTTCCA	.	78.0	11.0	92.0	0.0	.	60	.	.	Atlas-SNP
EVI5	7813	hgsc.bcm.edu	hg19	1	93091357	93091357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	EVI5	NM_005665	exon13	c.C1614G	p.H538Q	CTGCCAGTGTTCC	.	301.0	25.0	289.0	0.0	.	94	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94476366	94476366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	ABCA4	NM_000350	exon40	c.C5704T	p.L1902F	GGGAGAGGAAGAA	.	99.0	8.0	111.0	0.0	.	275	.	.	Atlas-SNP
CAPZA1	829	hgsc.bcm.edu	hg19	1	113202330	113202330	+	Missense_Mutation	SNP	C	C	T	rs145898509	alternate_allele	TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	CAPZA1	NM_006135	exon7	c.C514T	p.R172C	AATGGTCGTTGGA	.	69.0	9.0	65.0	0.0	.	16	.	C|1.000;A|0.000	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172548362	172548362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	.	NM_014283	exon15	c.A1453G	p.T485A	TATAATACTGGAG	.	231.0	17.0	162.0	0.0	.	.	.	.	Atlas-SNP
OR2G6	391211	hgsc.bcm.edu	hg19	1	248685675	248685675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	OR2G6	NM_001013355	exon1	c.C728A	p.S243Y	GTTCGTCTCACCT	.	83.0	10.0	58.0	0.0	.	124	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15614384	15614384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	NBAS	NM_015909	exon15	c.G1406A	p.G469E	TCTTCTCCTTCAT	.	109.0	10.0	100.0	0.0	.	246	.	.	Atlas-SNP
PASK	23178	hgsc.bcm.edu	hg19	2	242075394	242075394	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	PASK	NM_015148	exon8	c.T1198C	p.L400L	GCTGTAATGAGCT	.	108.0	12.0	103.0	0.0	.	230	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48608074	48608074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	COL7A1	NM_000094	exon95	c.G7342A	p.V2448M	TCACCACTGACCC	.	97.0	12.0	98.0	0.0	.	320	.	.	Atlas-SNP
FRMD4B	23150	hgsc.bcm.edu	hg19	3	69225699	69225699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	FRMD4B	NM_015123	exon22	c.A2960G	p.Y987C	GGATTATAGACAT	.	145.0	11.0	126.0	0.0	.	90	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122645524	122645524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SEMA5B	NM_001256347	exon9	c.A1013G	p.E338G	TTTGGCTCTGGGT	.	132.0	15.0	129.0	0.0	.	303	.	.	Atlas-SNP
MCM2	4171	hgsc.bcm.edu	hg19	3	127327292	127327292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	MCM2	NM_004526	exon7	c.T1169A	p.L390Q	GCCGGCTGCCCCG	.	164.0	18.0	173.0	0.0	.	79	.	.	Atlas-SNP
RTP1	132112	hgsc.bcm.edu	hg19	3	186917601	186917601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	RTP1	NM_153708	exon2	c.A535T	p.S179C	GTGGCCAGCCGCC	.	112.0	14.0	132.0	0.0	.	51	.	.	Atlas-SNP
ZFYVE28	57732	hgsc.bcm.edu	hg19	4	2321941	2321941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	ZFYVE28	NM_020972	exon7	c.G759T	p.M253I	CTCGGACATGTCT	.	85.0	14.0	66.0	0.0	.	79	.	.	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	hg19	4	82031670	82031670	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	PRKG2	NM_006259	exon14	c.C1872T	p.N624N	TCCCTTGTTGAGA	.	106.0	12.0	77.0	0.0	.	195	.	.	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	hg19	4	94693257	94693257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	GRID2	NM_001510	exon16	c.C2632T	p.H878Y	CACCTCCATAGAC	.	71.0	9.0	73.0	0.0	.	233	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71492333	71492333	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	MAP1B	NM_005909	exon5	c.A3151T	p.K1051X	GTCGACAAGGCTG	.	50.0	6.0	54.0	0.0	.	243	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71495123	71495123	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	MAP1B	NM_005909	exon5	c.A5941T	p.R1981X	AGGTCTAGAAGGC	.	52.0	11.0	59.0	0.0	.	243	.	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79034864	79034864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	CMYA5	NM_153610	exon2	c.T10276A	p.S3426T	ACAGAATCCCTGC	.	101.0	7.0	103.0	0.0	.	643	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90052872	90052872	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	GPR98	NM_032119	exon57	c.C11834G	p.A3945G	GGCTGGCTGGAAG	.	145.0	19.0	125.0	0.0	.	605	.	.	Atlas-SNP
SYNPO	11346	hgsc.bcm.edu	hg19	5	150029676	150029676	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SYNPO	NM_001166209	exon3	c.G2571A	p.L857L	TGCCCTGCCTCGG	.	105.0	16.0	108.0	0.0	.	147	.	.	Atlas-SNP
SLC17A4	10050	hgsc.bcm.edu	hg19	6	25776866	25776866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SLC17A4	NM_005495	exon9	c.G1031T	p.C344F	GTATCTGCATTAT	.	75.0	11.0	87.0	0.0	.	79	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51890835	51890835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	PKHD1	NM_170724	exon32	c.C3773G	p.P1258R	GCATCGGGTATCT	.	86.0	9.0	90.0	0.0	.	927	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65301270	65301270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	EYS	NM_001142800	exon26	c.C4490A	p.A1497D	ACCTTAGCAGGAA	.	109.0	8.0	84.0	0.0	.	527	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12684320	12684320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SCIN	NM_001112706	exon13	c.G1871T	p.G624V	AAACTGGAAGATT	.	53.0	6.0	75.0	0.0	.	105	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128450355	128450355	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	CCDC136	NM_022742	exon12	c.C1963T	p.Q655X	CATTTCCAGGAAG	.	138.0	18.0	147.0	0.0	.	170	.	.	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	hg19	7	133906659	133906659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	LRGUK	NM_144648	exon16	c.A1972G	p.K658E	GCCAAAAAAACAC	.	70.0	6.0	74.0	0.0	.	113	.	.	Atlas-SNP
SLC26A7	115111	hgsc.bcm.edu	hg19	8	92346665	92346665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SLC26A7	NM_134266	exon6	c.A785G	p.D262G	CTGTAGATTTAGT	.	48.0	14.0	42.0	0.0	.	207	.	.	Atlas-SNP
NIPAL2	79815	hgsc.bcm.edu	hg19	8	99208234	99208234	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	NIPAL2	NM_024759	exon10	c.881-1G>C	.	TGATACCTGTAAC	.	670.0	71.0	495.0	0.0	.	23	.	.	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	hg19	8	142222517	142222517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SLC45A4	NM_001080431	exon7	c.G1927T	p.V643F	GGATGACGCGGAC	.	70.0	16.0	86.0	0.0	.	71	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113261408	113261408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SVEP1	NM_153366	exon7	c.G1594T	p.G532W	TGAACCCTTGGCG	.	122.0	8.0	108.0	0.0	.	326	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140970351	140970351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	CACNA1B	NM_001243812	exon34	c.G4938A	p.M1646I	CCTGATGCTGCTG	.	68.0	15.0	98.0	0.0	.	266	.	.	Atlas-SNP
TIMM23	100287932	hgsc.bcm.edu	hg19	10	51592507	51592507	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	TIMM23	NM_006327	exon7	c.C627G	p.L209L	TCTTCAGAGTGAC	.	125.0	12.0	97.0	0.0	.	4	.	.	Atlas-SNP
FAM21A	387680	hgsc.bcm.edu	hg19	10	51829449	51829449	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	FAM21A	NM_001005751	exon3	c.C269G	p.S90C	TGCTCTCTAATAC	.	200.0	18.0	198.0	0.0	.	32	.	.	Atlas-SNP
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118711419	118711419	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	KIAA1598	NM_001127211	exon7	c.534+1G>A	.	TACATACTTCTTC	.	119.0	14.0	115.0	0.0	.	74	.	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	hg19	10	128153451	128153451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	C10orf90	NM_001004298	exon4	c.C1348T	p.P450S	CAATGGGAAGGAA	.	154.0	8.0	126.0	0.0	.	121	.	.	Atlas-SNP
MMP13	4322	hgsc.bcm.edu	hg19	11	102824960	102824960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	MMP13	NM_002427	exon4	c.G562C	p.A188P	GAAAAGCATGAGC	.	289.0	36.0	245.0	0.0	.	75	.	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	hg19	11	113075222	113075222	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	NCAM1	NM_001242608	exon4	c.C342A	p.I114I	GAAGATCTTTCGT	.	61.0	4.0	72.0	0.0	.	372	.	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85267040	85267040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SLC6A15	NM_182767	exon7	c.T935G	p.L312R	AATCCCAGACCTA	.	299.0	28.0	295.0	0.0	.	159	.	.	Atlas-SNP
WSCD2	9671	hgsc.bcm.edu	hg19	12	108603913	108603913	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	WSCD2,colon,carcinoma,0,1	WSCD2	NM_014653	exon4	c.C513T	p.G171G	GTATGGCGGGCTG	.	99.0	11.0	121.0	1.0	.	125	.	.	Atlas-SNP
MESP2	145873	hgsc.bcm.edu	hg19	15	90320134	90320134	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	MESP2,NS,carcinoma,0,1	MESP2	NM_001039958	exon1	c.A546G	p.Q182Q	GGGGCAAGGGCAG	.	44.0	6.0	13.0	1.0	.	20	.	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	hg19	16	87445309	87445309	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	ZCCHC14	NM_015144	exon12	c.G2607T	p.T869T	GGCAAACGTGGAC	.	68.0	9.0	50.0	0.0	.	87	.	.	Atlas-SNP
RNF135	84282	hgsc.bcm.edu	hg19	17	29325716	29325716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	RNF135	NM_032322	exon5	c.C806T	p.S269F	GCCTTTCCTGCAG	.	128.0	14.0	108.0	0.0	.	19	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45216246	45216246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	CDC27	NM_001114091	exon13	c.A1581G	p.I527M	TGAGAATATTCTT	.	54.0	12.0	46.0	0.0	.	337	.	.	Atlas-SNP
ADNP2	22850	hgsc.bcm.edu	hg19	18	77895930	77895930	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	ADNP2	NM_014913	exon4	c.C2634T	p.P878P	CTGCCCCTTTTGC	.	46.0	4.0	52.0	0.0	.	102	.	.	Atlas-SNP
SYT3	84258	hgsc.bcm.edu	hg19	19	51129192	51129192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SYT3	NM_032298	exon5	c.C1364A	p.A455D	TTAGAGGCTTTGA	.	113.0	5.0	94.0	0.0	.	85	.	.	Atlas-SNP
KRTAP27-1	643812	hgsc.bcm.edu	hg19	21	31709461	31709461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	KRTAP27-1,NS,carcinoma,0,1	KRTAP27-1	NM_001077711	exon1	c.C526A	p.L176M	TGACCAGAGGTCT	.	109.0	6.0	127.0	0.0	.	53	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42607813	42607813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	TCF20	NM_181492	exon1	c.A3499G	p.S1167G	CATCACTAGACAT	.	104.0	13.0	83.0	0.0	.	164	.	.	Atlas-SNP
KCNE1L	23630	hgsc.bcm.edu	hg19	X	108868238	108868238	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	KCNE1L	NM_012282	exon1	c.C12T	p.S4S	GCTCTCGCTGCAG	.	68.0	19.0	58.0	0.0	.	8	.	.	Atlas-SNP
ELMSAN1	91748	hgsc.bcm.edu	hg19	14	74196641	74196641	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	.	NM_194278	exon4	c.1798delC	p.P600fs	.	.	59.0	10.0	61.0	0.0	.	.	.	.	Atlas-INDEL
SORL1	6653	hgsc.bcm.edu	hg19	11	121384869	121384869	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	SORL1	NM_003105	exon8	c.1049delA	p.Y350fs	.	.	103.0	16.0	91.0	0.0	.	218	.	.	Atlas-Indel,Pindel
KRTAP5-4	387267	hgsc.bcm.edu	hg19	11	1643035	1643035	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	KRTAP5-4	NM_001012709	exon1	c.290delC	p.S97fs	.	.	206.0	16.0	244.0	0.0	.	78	.	.	Atlas-INDEL
PCDHGC4	56098	hgsc.bcm.edu	hg19	5	140867041	140867041	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9GX-01A-11D-A382-10	TCGA-2Y-A9GX-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e1ab7d98-d4e4-47e9-bcbd-a616ec8e29bb	e977b5c2-99d4-4352-b892-10503efd33a7	.	PCDHGC4	NM_018928	exon1	c.2300delG	p.G767fs	.	.	114.0	14.0	96.0	0.0	.	91	.	.	Atlas-Indel,Pindel