Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TMEM201	199953	hgsc.bcm.edu	hg19	1	9661209	9661209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	TMEM201	NM_001010866	exon5	c.G653T	p.R218L	TGCTCCGTGCCCT	.	100.0	25.0	167.0	0.0	.	63	.	.	Atlas-SNP
MIIP	60672	hgsc.bcm.edu	hg19	1	12082273	12082273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	MIIP	NM_021933	exon3	c.C236T	p.A79V	CAGATGCCTGTCG	.	133.0	43.0	178.0	0.0	.	34	.	.	Atlas-SNP
NECAP2	55707	hgsc.bcm.edu	hg19	1	16767319	16767319	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	NECAP2	NM_001145277	exon1	c.C63T	p.I21I	CCGCATCCCTCCG	.	72.0	13.0	97.0	0.0	.	24	.	.	Atlas-SNP
ZC3H12A	80149	hgsc.bcm.edu	hg19	1	37941375	37941375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ZC3H12A	NM_025079	exon2	c.A278G	p.E93G	CCACCGAGCGGGA	.	80.0	19.0	183.0	0.0	.	58	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55118680	55118680	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	.	NM_001039464	exon3	c.G81A	p.P27P	GGCCCCGGGATTA	.	99.0	35.0	105.0	0.0	.	.	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86954813	86954813	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	CLCA1	NM_001285	exon8	c.C1317T	p.P439P	GGGGCCCTCTGCA	.	129.0	31.0	101.0	0.0	.	109	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103496801	103496801	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	COL11A1_ENST00000370096,NS,carcinoma,0,2	COL11A1	NM_001190709	exon6	c.652-1G>T	.	GTCCCCCTGGGAA	.	36.0	8.0	27.0	0.0	.	972	.	.	Atlas-SNP
SEMA6C	10500	hgsc.bcm.edu	hg19	1	151105214	151105214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SEMA6C	NM_001178061	exon20	c.G2635A	p.G879S	CTCCGCCGACGCC	.	124.0	38.0	202.0	0.0	.	70	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186295267	186295267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	TPR	NM_003292	exon41	c.G5990A	p.G1997D	TCATTGCCATCGG	.	63.0	11.0	90.0	0.0	.	441	.	.	Atlas-SNP
ESRRG	2104	hgsc.bcm.edu	hg19	1	216680527	216680527	+	Splice_Site	SNP	T	T	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ESRRG	NM_001243510	exon9	c.1064-2A>T	.	GGAGTCTGTGCAA	.	170.0	48.0	165.0	0.0	.	111	.	.	Atlas-SNP
ESRRG	2104	hgsc.bcm.edu	hg19	1	216737654	216737654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ESRRG	NM_001243518	exon6	c.G805A	p.V269I	CGGGGACAGTAGG	.	149.0	41.0	96.0	0.0	.	111	.	.	Atlas-SNP
ZNF669	79862	hgsc.bcm.edu	hg19	1	247263872	247263872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ZNF669	NM_024804	exon4	c.G1199A	p.S400N	AGGCGACTGAAGG	.	158.0	49.0	246.0	0.0	.	46	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1648512	1648512	+	Silent	SNP	C	C	G	rs61731247	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PXDN	NM_012293	exon18	c.G3621C	p.S1207S	GAGTGTCGAGCCA	.	453.0	125.0	762.0	0.0	.	255	.	C|0.989;A|0.011	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98779440	98779440	+	Splice_Site	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	VWA3B	NM_144992	exon8	c.1114+1G>A	.	ACTGCGGTTGGTG	.	46.0	14.0	58.0	0.0	.	138	.	.	Atlas-SNP
NCK2	8440	hgsc.bcm.edu	hg19	2	106497846	106497846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	NCK2	NM_001004720	exon3	c.G289A	p.A97T	ACGGACGCCGAGT	.	46.0	18.0	61.0	0.0	.	75	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121745883	121745883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	GLI2	NM_005270	exon13	c.T2393C	p.M798T	TGACCATGCTGAG	.	479.0	133.0	829.0	0.0	.	187	.	.	Atlas-SNP
MBD5	55777	hgsc.bcm.edu	hg19	2	149227600	149227600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	MBD5	NM_018328	exon9	c.T2088G	p.F696L	TTCATTTCCCATC	.	89.0	36.0	72.0	0.0	.	164	.	.	Atlas-SNP
PTPRN	5798	hgsc.bcm.edu	hg19	2	220167512	220167512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PTPRN	NM_002846	exon5	c.T425C	p.L142S	TCCTGTAAAAGCA	.	90.0	19.0	161.0	0.0	.	138	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233208273	233208273	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	DIS3L2	NM_001257281	exon14	c.G1800C	p.Q600H	AACCCAGTTGCAG	.	160.0	61.0	234.0	0.0	.	77	.	.	Atlas-SNP
EPM2AIP1	9852	hgsc.bcm.edu	hg19	3	37033593	37033593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	EPM2AIP1	NM_014805	exon1	c.G976A	p.E326K	CTGATTCAGATTC	.	110.0	24.0	128.0	0.0	.	47	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47046579	47046579	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	NBEAL2	NM_015175	exon39	c.A6412C	p.R2138R	CTCGTGAGGGAGA	.	89.0	16.0	174.0	0.0	.	267	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51284221	51284221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	DOCK3_ENST00000266037,NS,carcinoma,0,2	DOCK3	NM_004947	exon22	c.A2167G	p.I723V	GACCACATTCAAG	.	93.0	23.0	147.0	0.0	.	397	.	.	Atlas-SNP
ZBED2	79413	hgsc.bcm.edu	hg19	3	111312572	111312572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ZBED2	NM_024508	exon2	c.G477T	p.E159D	AAGCACCTCCTTT	.	60.0	14.0	66.0	0.0	.	22	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142272131	142272131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ATR	NM_001184	exon13	c.G2743A	p.V915I	CTGCAACCAGAGC	.	124.0	26.0	133.0	0.0	.	285	.	.	Atlas-SNP
C4orf26	152816	hgsc.bcm.edu	hg19	4	76489697	76489697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	C4orf26	NM_001206981	exon3	c.T485C	p.F162S	TATCCTTCAGAAA	.	75.0	12.0	78.0	0.0	.	24	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66461632	66461632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	MAST4	NM_001164664	exon29	c.G6625T	p.D2209Y	CACCCCGACCGGT	.	94.0	23.0	139.0	0.0	.	218	.	.	Atlas-SNP
PCDHB4	56131	hgsc.bcm.edu	hg19	5	140501893	140501893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PCDHB4	NM_018938	exon1	c.T313C	p.F105L	CTGCATTTCCAAG	.	81.0	4.0	91.0	0.0	.	177	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169496161	169496161	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	DOCK2	NM_004946	exon46	c.T4665A	p.Y1555X	AGAGTATGTCAGG	.	174.0	41.0	246.0	0.0	.	389	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74227933	74227933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	EEF1A1,NS,carcinoma,0,1	EEF1A1	NM_001402	exon7	c.G1084T	p.D362Y	GGCAATCCAATAC	.	190.0	40.0	190.0	0.0	.	56	.	.	Atlas-SNP
SOGA3	387104	hgsc.bcm.edu	hg19	6	127834064	127834064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	.	NM_001012279	exon4	c.T1457C	p.L486S	TTCTGTAAAGCTT	.	137.0	18.0	142.0	0.0	.	.	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3245023	3245023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	CSMD1	NM_033225	exon18	c.C2775A	p.S925R	GTCGCAGCTGGGC	.	70.0	18.0	78.0	0.0	.	1469	.	.	Atlas-SNP
PPAPDC2	403313	hgsc.bcm.edu	hg19	9	4662813	4662813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PPAPDC2	NM_203453	exon1	c.G438T	p.W146C	CCCCTGGCTGCTG	.	50.0	13.0	61.0	0.0	.	12	.	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114476836	114476836	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	C9orf84	NM_173521	exon15	c.A2112T	p.R704S	CAGCTGTCTCCAA	.	126.0	28.0	124.0	0.0	.	207	.	.	Atlas-SNP
SUSD1	64420	hgsc.bcm.edu	hg19	9	114905792	114905792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SUSD1	NM_022486	exon4	c.C485T	p.P162L	GGTTCAGGTCCAT	.	74.0	23.0	109.0	0.0	.	51	.	.	Atlas-SNP
MAPKAP1	79109	hgsc.bcm.edu	hg19	9	128206874	128206874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	MAPKAP1	NM_001006617	exon11	c.A1349G	p.H450R	ATTGCGTGACCTG	.	40.0	12.0	82.0	0.0	.	68	.	.	Atlas-SNP
EHMT1	79813	hgsc.bcm.edu	hg19	9	140669567	140669567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	EHMT1	NM_001145527	exon11	c.C1654T	p.R552W	TTGGGCCGGTGCA	.	69.0	18.0	101.0	0.0	.	196	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	468861	468861	+	Silent	SNP	G	G	A	rs145952021		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	DIP2C	NM_014974	exon5	c.C507T	p.H169H	GGAGCCGTGGATG	.	64.0	19.0	101.0	0.0	.	195	.	G|1.000;A|0.000	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	hg19	10	21178791	21178791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	NEBL	NM_006393	exon3	c.G241T	p.G81C	AAGCACCGATATT	.	196.0	40.0	207.0	0.0	.	199	.	.	Atlas-SNP
TSPAN4	7106	hgsc.bcm.edu	hg19	11	850322	850322	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	TSPAN4	NM_001025235	exon3	c.C18T	p.L6L	CTGCCTCCAGGCC	.	47.0	9.0	66.0	0.0	.	14	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6662511	6662511	+	Missense_Mutation	SNP	G	G	A	rs367639691		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	DCHS1	NM_003737	exon2	c.C334T	p.R112W	GGTCCCGCTGCTC	.	84.0	6.0	117.0	0.0	.	277	.	.	Atlas-SNP
OR4A15	81328	hgsc.bcm.edu	hg19	11	55135909	55135909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	OR4A15	NM_001005275	exon1	c.T550C	p.S184P	CTTCACTCATTGG	.	73.0	22.0	69.0	0.0	.	161	.	.	Atlas-SNP
OR5B17	219965	hgsc.bcm.edu	hg19	11	58126247	58126247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	OR5B17	NM_001005489	exon1	c.T296C	p.M99T	AAGAACATCTGAG	.	136.0	35.0	182.0	0.0	.	64	.	.	Atlas-SNP
GPR152	390212	hgsc.bcm.edu	hg19	11	67220097	67220097	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	GPR152	NM_206997	exon1	c.G99T	p.T33T	GAAGACCGTGTCC	.	193.0	55.0	326.0	0.0	.	41	.	.	Atlas-SNP
WNT11	7481	hgsc.bcm.edu	hg19	11	75907729	75907729	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	WNT11	NM_004626	exon2	c.G117A	p.L39L	CTGGTTCAGTGCC	.	109.0	25.0	150.0	0.0	.	44	.	.	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128868356	128868356	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ARHGAP32	NM_001142685	exon11	c.A1011G	p.K337K	GTGCTTTTTAGAC	.	59.0	12.0	78.0	0.0	.	307	.	.	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5153915	5153915	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	KCNA5,NS,carcinoma,0,1	KCNA5	NM_002234	exon1	c.G602C	p.R201P	AGATACGCTTCTA	.	52.0	16.0	98.0	0.0	.	138	.	.	Atlas-SNP
KLRC3	3823	hgsc.bcm.edu	hg19	12	10573090	10573090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	KLRC3	NM_007333	exon1	c.G60C	p.Q20H	CCTTTGCTGCCAC	.	70.0	19.0	57.0	0.0	.	25	.	.	Atlas-SNP
ALG10B	144245	hgsc.bcm.edu	hg19	12	38710750	38710750	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ALG10B	NM_001013620	exon1	c.G55C	p.V19L	TTTTTAGTGTCCT	.	92.0	33.0	124.0	0.0	.	58	.	.	Atlas-SNP
GLIPR1L2	144321	hgsc.bcm.edu	hg19	12	75807475	75807475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	GLIPR1L2_ENST00000550916,colon,carcinoma,0,2	GLIPR1L2	NM_152436	exon3	c.C578T	p.A193V	ACTATGCGCCAGG	.	154.0	48.0	120.0	0.0	.	54	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	81007565	81007565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PTPRQ	NM_001145026	exon26	c.G4597A	p.V1533I	ACATTCGTCATTG	.	139.0	43.0	93.0	0.0	.	119	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120213641	120213641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	CIT	NM_001206999	exon16	c.C1890G	p.I630M	AGCATTGATCTAT	.	81.0	25.0	95.0	0.0	.	535	.	.	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	hg19	12	130926753	130926753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	RIMBP2,NS,carcinoma,0,1	RIMBP2	NM_015347	exon8	c.C1093A	p.R365S	AGATGCGGTAGGT	.	99.0	31.0	120.0	0.0	.	220	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42873655	42873655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	AKAP11	NM_016248	exon8	c.A773G	p.H258R	TGGGACATAAAGA	.	169.0	49.0	147.0	0.0	.	146	.	.	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34145492	34145492	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	NPAS3	NM_001164749	exon6	c.A634C	p.M212L	CTGGGCATGAAGC	.	58.0	18.0	69.0	0.0	.	266	.	.	Atlas-SNP
DNAAF2	55172	hgsc.bcm.edu	hg19	14	50092384	50092384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	DNAAF2	NM_018139	exon3	c.A2390G	p.N797S	GGTATATTGTGAA	.	108.0	23.0	153.0	0.0	.	47	.	.	Atlas-SNP
DDX24	57062	hgsc.bcm.edu	hg19	14	94545834	94545834	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	DDX24	NM_020414	exon2	c.G255A	p.E85E	CTCCTCCTCTTCT	.	92.0	6.0	80.0	0.0	.	82	.	.	Atlas-SNP
PLCB2	5330	hgsc.bcm.edu	hg19	15	40588548	40588548	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PLCB2	NM_004573	exon16	c.C1645T	p.L549L	TGACTAGGCTGGA	.	72.0	17.0	131.0	0.0	.	177	.	.	Atlas-SNP
TSPAN3	10099	hgsc.bcm.edu	hg19	15	77345132	77345132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	TSPAN3	NM_005724	exon5	c.A572G	p.D191G	TAGAGGTCGGAAG	.	133.0	6.0	174.0	0.0	.	21	.	.	Atlas-SNP
HMG20A	10363	hgsc.bcm.edu	hg19	15	77750751	77750751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	HMG20A	NM_018200	exon3	c.T2G	p.M1R	GAGAGATGGAAAA	.	30.0	7.0	44.0	0.0	.	48	.	.	Atlas-SNP
TM6SF1	53346	hgsc.bcm.edu	hg19	15	83781634	83781634	+	Silent	SNP	C	C	A	rs371581703	alternate_allele	TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	TM6SF1	NM_001144903	exon2	c.C178A	p.R60R	CCACCCCGGGACC	.	113.0	26.0	190.0	0.0	.	38	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	86800184	86800184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	AGBL1	NM_152336	exon7	c.G698T	p.S233I	CAGCCAGCAGTGC	.	81.0	19.0	77.0	0.0	.	151	.	.	Atlas-SNP
SYNGR3	9143	hgsc.bcm.edu	hg19	16	2042999	2042999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SYNGR3	NM_004209	exon4	c.G616C	p.E206Q	GGCACCGAGACCT	.	104.0	24.0	199.0	0.0	.	10	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67916488	67916488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	EDC4	NM_014329	exon25	c.A3433G	p.T1145A	CTGGGGACACAGG	.	100.0	29.0	170.0	0.0	.	101	.	.	Atlas-SNP
G6PC	2538	hgsc.bcm.edu	hg19	17	41056030	41056030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	G6PC	NM_001270397	exon2	c.T313C	p.F105L	AAGCAGTTCCCTG	.	79.0	20.0	112.0	0.0	.	48	.	.	Atlas-SNP
EPN3	55040	hgsc.bcm.edu	hg19	17	48614268	48614268	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	EPN3	NM_017957	exon2	c.G351C	p.K117N	CGGCAAGGACCAG	.	119.0	5.0	222.0	0.0	.	32	.	.	Atlas-SNP
CDR2L	30850	hgsc.bcm.edu	hg19	17	72999276	72999276	+	Splice_Site	SNP	A	A	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	.	NM_014603	exon5	c.507-2A>T	.	CCCGCCAGGTGCA	.	132.0	37.0	222.0	0.0	.	.	.	.	Atlas-SNP
ZNF556	80032	hgsc.bcm.edu	hg19	19	2877815	2877815	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ZNF556	NM_024967	exon4	c.T859A	p.Y287N	AGACCGTATGAGT	.	131.0	42.0	167.0	0.0	.	73	.	.	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	hg19	19	47960478	47960478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SLC8A2	NM_015063	exon3	c.G1049A	p.R350H	AAGGCGCGGCTCT	.	62.0	13.0	106.0	0.0	.	77	.	.	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	hg19	19	54756264	54756264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	LILRB5	NM_001081442	exon11	c.C1541A	p.A514D	GGGCTGGCCCTGG	.	84.0	14.0	100.0	0.0	.	176	.	.	Atlas-SNP
BRSK1	84446	hgsc.bcm.edu	hg19	19	55815039	55815039	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	BRSK1	NM_032430	exon12	c.C1131T	p.P377P	AGACCCCCCCCGG	.	217.0	59.0	371.0	0.0	.	192	.	.	Atlas-SNP
ABHD12	26090	hgsc.bcm.edu	hg19	20	25319898	25319898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ABHD12	NM_001042472	exon2	c.C281T	p.P94L	ATTCCAGGACATA	.	346.0	91.0	390.0	0.0	.	46	.	.	Atlas-SNP
KRTAP6-1	337966	hgsc.bcm.edu	hg19	21	31986208	31986208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	KRTAP6-1	NM_181602	exon1	c.T16C	p.Y6H	TTCCGTAGTAGCT	.	114.0	40.0	126.0	0.0	.	21	.	.	Atlas-SNP
SERPIND1	3053	hgsc.bcm.edu	hg19	22	21140349	21140349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SERPIND1	NM_000185	exon4	c.G1221T	p.E407D	AGTGGAGTCCCTG	.	93.0	33.0	167.0	0.0	.	92	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22842186	22842186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	ZNF280B,NS,carcinoma,0,1	ZNF280B	NM_080764	exon4	c.G1538T	p.G513V	ACTGATCCTGGCT	.	89.0	26.0	99.0	0.0	.	67	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46776800	46776800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	CELSR1	NM_014246	exon22	c.A7141G	p.S2381G	CCTCGCTGTACAC	.	70.0	17.0	103.0	0.0	.	242	.	.	Atlas-SNP
PPP6R2	9701	hgsc.bcm.edu	hg19	22	50874856	50874856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PPP6R2	NM_001242899	exon14	c.C1580A	p.T527K	CGGAGACGAACCG	.	265.0	63.0	451.0	0.0	.	71	.	.	Atlas-SNP
ZNF645	158506	hgsc.bcm.edu	hg19	X	22291149	22291149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ZNF645	NM_152577	exon1	c.A41G	p.N14S	AATATAACAAAGA	.	201.0	111.0	327.0	0.0	.	67	.	.	Atlas-SNP
CXorf36	79742	hgsc.bcm.edu	hg19	X	45017000	45017000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	CXorf36	NM_176819	exon3	c.T632C	p.L211P	GTGTAGAGCAGGC	.	59.0	32.0	92.0	0.0	.	53	.	.	Atlas-SNP
CLCN5	1184	hgsc.bcm.edu	hg19	X	49840465	49840465	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	CLCN5	NM_001127898	exon7	c.T431A	p.L144X	CTGGTTTGATAGA	.	102.0	51.0	101.0	0.0	.	137	.	.	Atlas-SNP
FGD1	2245	hgsc.bcm.edu	hg19	X	54496732	54496732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	FGD1	NM_004463	exon4	c.G818T	p.R273L	CCGTCCCGGGGCC	.	60.0	4.0	88.0	0.0	.	99	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70643062	70643062	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	TAF1	NM_004606	exon30	c.C4608T	p.V1536V	CATTGTCACCCAG	.	93.0	38.0	97.0	0.0	.	439	.	.	Atlas-SNP
ARMCX6	54470	hgsc.bcm.edu	hg19	X	100871590	100871590	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	ARMCX6	NM_001184768	exon4	c.G21T	p.V7V	CCAACCCACTTCC	.	120.0	49.0	96.0	0.0	.	21	.	.	Atlas-SNP
SLC6A14	11254	hgsc.bcm.edu	hg19	X	115577963	115577963	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SLC6A14	NM_007231	exon7	c.A846G	p.R282R	AGTACGAGGTGCA	.	249.0	101.0	190.0	0.0	.	56	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9343	9343	+	Missense_Mutation	SNP	G	G	A	rs28672157	bycluster	TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	.	ENST00000362079	exon1	c.G137A	p.G46D	TACTAGGCCTACT	.	31.0	9.0	4.0	0.0	.	.	.	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41280125	41280125	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	INO80	NM_017553	exon30	c.3619delA	p.M1207fs	.	.	151.0	37.0	178.0	0.0	.	122	.	.	Atlas-Indel,Pindel
MTSS1	9788	hgsc.bcm.edu	hg19	8	125565324	125565324	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	MTSS1	NM_014751	exon14	c.2178delA	p.P726fs	.	.	110.0	23.0	148.0	0.0	.	79	.	.	Atlas-Indel,Pindel
SLC7A9	11136	hgsc.bcm.edu	hg19	19	33355006	33355008	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	SLC7A9	NM_001243036	exon4	c.473_475del	p.158_159del	.	.	72.0	23.0	142.0	0.0	.	78	.	.	Atlas-Indel,Pindel
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42164801	42164808	+	Frame_Shift_Del	DEL	TGCCTCTC	TGCCTCTC	-	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	TGCCTCTC	TGCCTCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	L3MBTL1	NM_032107	exon18	c.1923_1930del	p.641_644del	.	.	88.0	17.0	108.0	0.0	.	105	.	.	Atlas-Indel,Pindel
NEFH	4744	hgsc.bcm.edu	hg19	22	29885589	29885590	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.,4	NEFH	NM_021076	exon4	c.1960_1961insCCCCTGAGAAGGCCAAGT	p.S654delinsSPEKAKS	.	.	249.0	66.0	309.0	0.0	.	178	.	.	Atlas-INDEL
PVRL1	5818	hgsc.bcm.edu	hg19	11	119508882	119508883	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9GT-01A-11D-A382-10	TCGA-2Y-A9GT-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	38c5baf0-5376-42d2-b545-89f5c606b05e	76f29a85-4ade-4630-b69b-5a23a1c16628	.	PVRL1	NM_203285	exon8	c.1303_1304insC	p.Y435fs	.	.	51.0	16.0	104.0	0.0	.	133	.	.	Atlas-Indel,Pindel