Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF25	8718	hgsc.bcm.edu	hg19	1	6524730	6524730	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	TNFRSF25	NM_148966	exon4	c.T345C	p.C115C	ACAGCCACAGCGG	.	139.0	14.0	83.0	0.0	.	22	.	.	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	hg19	1	82302739	82302739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	LPHN2	NM_012302	exon2	c.G70A	p.E24K	AATACAGAAGGTA	.	176.0	28.0	83.0	0.0	.	464	.	.	Atlas-SNP
CTBS	1486	hgsc.bcm.edu	hg19	1	85040007	85040007	+	Missense_Mutation	SNP	A	A	C	rs199701060		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	CTBS	NM_004388	exon1	c.T92G	p.L31R	AGCGCCAGCAGCG	.	132.0	10.0	94.0	0.0	.	24	.	.	Atlas-SNP
ZNF326	284695	hgsc.bcm.edu	hg19	1	90473296	90473296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ZNF326	NM_182976	exon5	c.G602T	p.G201V	GCAGAGGCCGAGG	.	177.0	60.0	118.0	0.0	.	60	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156640363	156640363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	NES	NM_006617	exon4	c.G3617T	p.G1206V	TCTGACCCCAGAG	.	84.0	29.0	94.0	0.0	.	196	.	.	Atlas-SNP
FCRL4	83417	hgsc.bcm.edu	hg19	1	157559113	157559113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	FCRL4	NM_031282	exon3	c.G188T	p.W63L	TCTCCCCAGTAGT	.	250.0	80.0	202.0	0.0	.	95	.	.	Atlas-SNP
RXRG	6258	hgsc.bcm.edu	hg19	1	165386442	165386442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	RXRG	NM_006917	exon4	c.T458C	p.V153A	CTGTATACCCCGT	.	154.0	51.0	135.0	0.0	.	91	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176918372	176918372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ASTN1	NM_004319	exon12	c.T2003G	p.M668R	GGCGCCATCTGCT	.	94.0	8.0	60.0	0.0	.	314	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228506637	228506637	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	OBSCN	NM_001271223	exon65	c.C17055A	p.P5685P	GCCCCCCGAGGCA	.	144.0	43.0	101.0	0.0	.	2142	.	.	Atlas-SNP
CEP68	23177	hgsc.bcm.edu	hg19	2	65309718	65309718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	CEP68	NM_015147	exon6	c.A2153C	p.E718A	AGCTGGAGAGCCA	.	151.0	37.0	115.0	0.0	.	69	.	.	Atlas-SNP
MRPL19	9801	hgsc.bcm.edu	hg19	2	75881940	75881940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	MRPL19	NM_014763	exon5	c.A554G	p.D185G	TGGATGATAGCTT	.	155.0	43.0	113.0	0.0	.	21	.	.	Atlas-SNP
MGAT5	4249	hgsc.bcm.edu	hg19	2	135075151	135075151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	MGAT5	NM_002410	exon3	c.A458G	p.Y153C	ACGGCTACCCTCA	.	78.0	25.0	60.0	0.0	.	84	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160708822	160708822	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	LY75	NM_002349	exon21	c.A2773T	p.K925X	GCAACTTGGTACT	.	158.0	51.0	129.0	0.0	.	151	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179474818	179474818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	TTN	NM_001267550	exon271	c.G51435T	p.K17145N	CTTACGCTTTGGA	.	96.0	37.0	70.0	0.0	.	18412	.	.	Atlas-SNP
ANKRD44	91526	hgsc.bcm.edu	hg19	2	197948210	197948210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ANKRD44	NM_001195144	exon14	c.C1340T	p.A447V	CAATTCGCAGCTG	.	89.0	39.0	97.0	0.0	.	281	.	.	Atlas-SNP
CTDSP1	58190	hgsc.bcm.edu	hg19	2	219268014	219268014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	CTDSP1	NM_021198	exon6	c.T531G	p.F177L	GCTGTTTCGAGAG	.	126.0	52.0	90.0	0.0	.	19	.	.	Atlas-SNP
PTPRN	5798	hgsc.bcm.edu	hg19	2	220167459	220167459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	PTPRN	NM_002846	exon5	c.C478T	p.P160S	CTGGTGGTTGTGG	.	124.0	37.0	93.0	0.0	.	138	.	.	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	hg19	2	240981415	240981415	+	Missense_Mutation	SNP	A	A	G	rs113785129		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	PRR21	NM_001080835	exon1	c.T985C	p.S329P	GAAGAGACGTGGA	.	96.0	5.0	72.0	0.0	.	53	.	A|0.500;G|0.500	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33725916	33725916	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	CLASP2	NM_015097	exon6	c.G579C	p.E193D	ATAAATCTCCACT	.	327.0	133.0	296.0	0.0	.	138	.	.	Atlas-SNP
FRMD4B	23150	hgsc.bcm.edu	hg19	3	69230791	69230791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	FRMD4B	NM_015123	exon21	c.G2110A	p.E704K	CCATCTCGGAGAG	.	132.0	45.0	136.0	0.0	.	90	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195509689	195509689	+	Missense_Mutation	SNP	G	G	T	rs59620726	bycluster;alternate_allele	TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	NM_018406	exon2	c.C8762A	p.A2921E	GTGGATGCTGAGG	.	53.0	4.0	50.0	1.0	.	1505	.	G|0.997;A|0.003	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46043212	46043212	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	GABRG1,NS,lymphoid_neoplasm,-1,1	GABRG1	NM_173536	exon9	c.G1191A	p.P397P	TTCTTGCGGCACA	.	90.0	40.0	102.0	1.0	.	172	.	.	Atlas-SNP
BASP1	10409	hgsc.bcm.edu	hg19	5	17275720	17275720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	BASP1	NM_006317	exon2	c.G395A	p.S132N	CCGAGAGCGCGGC	.	103.0	43.0	78.0	0.0	.	29	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	31983276	31983276	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	PDZD2	NM_178140	exon2	c.G492A	p.Q164Q	TGAGCAGTGCTGG	.	80.0	26.0	61.0	0.0	.	306	.	.	Atlas-SNP
EDIL3	10085	hgsc.bcm.edu	hg19	5	83433153	83433153	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	EDIL3	NM_005711	exon5	c.T375G	p.V125V	AGGCTCAACTTCG	.	72.0	25.0	41.0	0.0	.	94	.	.	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121759066	121759066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	SNCAIP	NM_005460	exon4	c.C634A	p.P212T	CTTTCTCCCGTGA	.	172.0	25.0	120.0	0.0	.	308	.	.	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	hg19	5	126734452	126734452	+	Missense_Mutation	SNP	C	C	A	rs190469012	bycluster;by1000genomes;alternate_allele	TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	MEGF10,rectum,carcinoma,0,1	MEGF10	NM_032446	exon8	c.C744A	p.H248Q	TCATCACGTCACT	.	139.0	38.0	127.0	0.0	.	152	.	C|1.000;T|0.000	Atlas-SNP
SLC25A48	153328	hgsc.bcm.edu	hg19	5	135188365	135188365	+	Silent	SNP	C	C	T	rs368023667	alternate_allele	TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	SLC25A48	NM_145282	exon4	c.C276T	p.C92C	CCGCTGCGGGGAG	.	125.0	43.0	104.0	0.0	.	37	.	.	Atlas-SNP
WNT8A	7478	hgsc.bcm.edu	hg19	5	137420203	137420203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	WNT8A	NM_058244	exon3	c.C119T	p.T40M	CCTACACGACTAG	.	89.0	33.0	84.0	0.0	.	36	.	.	Atlas-SNP
PCDHGA6	56109	hgsc.bcm.edu	hg19	5	140755818	140755818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	PCDHGA6	NM_018919	exon1	c.G2168A	p.R723H	AGTCACGCCTGCT	.	164.0	59.0	164.0	0.0	.	219	.	.	Atlas-SNP
DRD1	1812	hgsc.bcm.edu	hg19	5	174869971	174869971	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	DRD1,colon,carcinoma,0,2	DRD1	NM_000794	exon2	c.C132G	p.V44V	AGCACAGACCAGC	.	140.0	55.0	168.0	0.0	.	56	.	.	Atlas-SNP
GFRAL	389400	hgsc.bcm.edu	hg19	6	55216306	55216306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	GFRAL	NM_207410	exon5	c.C626G	p.T209R	GCAAGACATGTGC	.	112.0	43.0	97.0	0.0	.	91	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48626793	48626793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	ABCA13_ENST00000435803,rectum,carcinoma,+1,2	ABCA13	NM_152701	exon57	c.C14549T	p.A4850V	CCCACGCGGACAA	.	53.0	19.0	54.0	0.0	.	1192	.	.	Atlas-SNP
TECPR1	25851	hgsc.bcm.edu	hg19	7	97863212	97863212	+	Missense_Mutation	SNP	A	A	C	rs375012059		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	TECPR1	NM_015395	exon11	c.T1193G	p.F398C	CCGAAGAAGCAGC	.	252.0	42.0	214.0	0.0	.	77	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107696204	107696204	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	LAMB4	NM_007356	exon25	c.C3628T	p.L1210L	CAGGCAGGGTCTC	.	138.0	20.0	90.0	0.0	.	253	.	.	Atlas-SNP
GEM	2669	hgsc.bcm.edu	hg19	8	95262710	95262710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	GEM	NM_181702	exon5	c.G719A	p.R240H	CGAAGGCGCACCT	.	103.0	42.0	89.0	0.0	.	40	.	.	Atlas-SNP
RGS22	26166	hgsc.bcm.edu	hg19	8	101076177	101076177	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	RGS22	NM_015668	exon8	c.A819T	p.G273G	TTCTTCTCCTTCT	.	57.0	7.0	59.0	0.0	.	319	.	.	Atlas-SNP
ABRA	137735	hgsc.bcm.edu	hg19	8	107773510	107773510	+	Missense_Mutation	SNP	G	G	T	rs182944429	bycluster;by1000genomes;alternate_allele	TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ABRA	NM_139166	exon2	c.C901A	p.R301S	CAGCACGCTTGGC	.	114.0	51.0	118.0	0.0	.	57	.	G|1.000;A|0.000	Atlas-SNP
CYC1	1537	hgsc.bcm.edu	hg19	8	145150769	145150769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	CYC1	NM_001916	exon2	c.C163G	p.R55G	CTTTCCCGAGGCC	.	45.0	15.0	28.0	0.0	.	34	.	.	Atlas-SNP
OR1L4	254973	hgsc.bcm.edu	hg19	9	125486542	125486542	+	Missense_Mutation	SNP	A	A	T	rs143746640	bycluster;byfrequency;alternate_allele	TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	OR1L4	NM_001005235	exon1	c.A274T	p.I92F	ACAAAGATTATCT	.	78.0	47.0	82.0	0.0	.	38	.	A|0.984;G|0.016	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7212949	7212949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	SFMBT2	NM_001029880	exon20	c.G2485A	p.V829M	TCACCACGTCGGT	.	150.0	47.0	99.0	0.0	.	209	.	.	Atlas-SNP
ST8SIA6	338596	hgsc.bcm.edu	hg19	10	17363216	17363216	+	Silent	SNP	C	C	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ST8SIA6	NM_001004470	exon8	c.G858C	p.T286T	TTCGAGCGTGTAG	.	252.0	98.0	223.0	0.0	.	85	.	.	Atlas-SNP
CWF19L1	55280	hgsc.bcm.edu	hg19	10	102020773	102020773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	CWF19L1	NM_018294	exon3	c.G137C	p.G46A	GTGGAGCCAAAGA	.	403.0	232.0	484.0	1.0	.	39	.	.	Atlas-SNP
OR52R1	119695	hgsc.bcm.edu	hg19	11	4824698	4824698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	OR52R1	NM_001005177	exon1	c.A913G	p.R305G	TAACCCTGTCCCC	.	152.0	56.0	117.0	0.0	.	81	.	.	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7091576	7091576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	NLRP14	NM_176822	exon11	c.G3035A	p.C1012Y	TTATCTGCAACAA	.	99.0	35.0	72.0	0.0	.	187	.	.	Atlas-SNP
DAK	26007	hgsc.bcm.edu	hg19	11	61113934	61113934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	DAK	NM_015533	exon18	c.G1687T	p.A563S	GCAGCTGCTGCCA	.	28.0	15.0	26.0	0.0	.	52	.	.	Atlas-SNP
MAP4K2	5871	hgsc.bcm.edu	hg19	11	64567661	64567661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	MAP4K2	NM_004579	exon12	c.C835T	p.R279W	GGGCCCGAGGGAG	.	30.0	6.0	35.0	0.0	.	83	.	.	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	hg19	12	52681039	52681039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	KRT81	NM_002281	exon7	c.G1094A	p.R365H	TTGCAGCGGGCAT	.	92.0	22.0	89.0	0.0	.	46	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56995571	56995571	+	Missense_Mutation	SNP	T	T	C	rs367656362		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	BAZ2A	NM_013449	exon20	c.A3836G	p.H1279R	GAGCTATGGCTCT	.	108.0	31.0	72.0	0.0	.	263	.	.	Atlas-SNP
HSP90B1	7184	hgsc.bcm.edu	hg19	12	104337556	104337556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	HSP90B1	NM_003299	exon14	c.C1931A	p.P644Q	AATCTCCGTGTGC	.	86.0	18.0	93.0	0.0	.	72	.	.	Atlas-SNP
EXD1	161829	hgsc.bcm.edu	hg19	15	41476594	41476594	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	EXD1	NM_152596	exon10	c.T1080C	p.F360F	TATCCTAAAATTT	.	159.0	22.0	104.0	0.0	.	52	.	.	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	hg19	15	85634396	85634396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	PDE8A	NM_002605	exon8	c.G836T	p.C279F	ATTCATGCATCAG	.	271.0	77.0	173.0	0.0	.	50	.	.	Atlas-SNP
GSG1L	146395	hgsc.bcm.edu	hg19	16	28074601	28074601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	GSG1L	NM_001109763	exon1	c.C145T	p.R49C	TGGCGCGCCCGCC	.	8.0	6.0	4.0	0.0	.	82	.	.	Atlas-SNP
IL27	246778	hgsc.bcm.edu	hg19	16	28511194	28511194	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	IL27	NM_145659	exon5	c.G510A	p.E170E	CTCCTCCTCTTCC	.	94.0	5.0	67.0	0.0	.	27	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	87.0	40.0	94.0	0.0	.	33396	.	.	Atlas-SNP
PTRF	284119	hgsc.bcm.edu	hg19	17	40556985	40556985	+	Missense_Mutation	SNP	C	C	T	rs144331065		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	PTRF,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PTRF	NM_012232	exon2	c.G893A	p.R298H	GATTTGCGCAACT	.	106.0	11.0	85.0	0.0	.	48	.	C|1.000;T|0.000	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79093297	79093297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	AATK	NM_001080395	exon13	c.G3967A	p.A1323T	CCGGGGCGGGTGC	.	178.0	51.0	141.0	0.0	.	102	.	.	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	hg19	18	45555810	45555810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ZBTB7C	NM_001039360	exon3	c.C1681T	p.R561C	GCGCGCGCCCGAA	.	89.0	33.0	53.0	0.0	.	73	.	.	Atlas-SNP
DNAJB1	3337	hgsc.bcm.edu	hg19	19	14627395	14627395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	DNAJB1	NM_006145	exon2	c.C675A	p.D225E	GGTCTGGTCTCCT	.	52.0	15.0	81.0	0.0	.	38	.	.	Atlas-SNP
LILRA4	23547	hgsc.bcm.edu	hg19	19	54849337	54849337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	LILRA4	NM_012276	exon4	c.G525T	p.K175N	CTGGAACTTTCCA	.	161.0	64.0	129.0	0.0	.	91	.	.	Atlas-SNP
PLAGL2	5326	hgsc.bcm.edu	hg19	20	30785139	30785139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	PLAGL2	NM_002657	exon3	c.C607A	p.R203S	CCTTACGAGTATA	.	98.0	4.0	85.0	0.0	.	56	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61510865	61510865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	DIDO1	NM_001193369	exon16	c.A6443G	p.D2148G	TTTCTGTCCCAGT	.	102.0	35.0	81.0	0.0	.	321	.	.	Atlas-SNP
KRTAP13-3	337960	hgsc.bcm.edu	hg19	21	31798109	31798109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	KRTAP13-3	NM_181622	exon1	c.G122T	p.C41F	GGAGAGCAGAGGT	.	135.0	27.0	134.0	0.0	.	47	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37617781	37617781	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	DOPEY2	NM_005128	exon19	c.A3503T	p.E1168V	AGTCAGAAAGCTT	.	63.0	23.0	64.0	0.0	.	184	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37617797	37617797	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	DOPEY2	NM_005128	exon19	c.G3519T	p.G1173G	GGCTGGGGCCAAG	.	55.0	26.0	53.0	0.0	.	184	.	.	Atlas-SNP
PLAC4	191585	hgsc.bcm.edu	hg19	21	42551433	42551433	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	.	NM_182832	exon1	c.C123T	p.P41P	GTGTCTGGGGTGA	.	85.0	6.0	92.0	0.0	.	.	.	.	Atlas-SNP
SMTN	6525	hgsc.bcm.edu	hg19	22	31494787	31494787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	SMTN	NM_001207017	exon18	c.A2549G	p.K850R	CGCGCAAGGCCAT	.	74.0	15.0	112.0	0.0	.	219	.	.	Atlas-SNP
TKTL1	8277	hgsc.bcm.edu	hg19	X	153556300	153556300	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	TKTL1	NM_012253	exon12	c.G1614A	p.P538P	CTACCCGCAAGGT	.	159.0	112.0	143.0	1.0	.	61	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10602490	10602514	+	Frame_Shift_Del	DEL	CTCCGCGGCACCTGCAGGTCCGCCA	CTCCGCGGCACCTGCAGGTCCGCCA	-	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	CTCCGCGGCACCTGCAGGTCCGCCA	CTCCGCGGCACCTGCAGGTCCGCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	KEAP1	NM_012289	exon3	c.1065_1089del	p.355_363del	.	.	58.0	30.0	110.0	0.0	.	182	.	.	Atlas-Indel,Pindel
IL1RAP	3556	hgsc.bcm.edu	hg19	3	190362044	190362045	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	IL1RAP	NM_001167931	exon10	c.1059_1060insC	p.A353fs	.	.	109.0	35.0	71.0	0.0	.	96	.	.	Atlas-Indel,Pindel
STUB1	10273	hgsc.bcm.edu	hg19	16	731861	731892	+	In_Frame_Del	DEL	CCTGCATTGAGGCCAAGCACGTGAGGGTGCCC	CCTGCATTGAGGCCAAGCACGTGAGGGTGCCC	-	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	CCTGCATTGAGGCCAAGCACGTGAGGGTGCCC	CCTGCATTGAGGCCAAGCACGTGAGGGTGCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	STUB1	NM_005861	exon4	c.592_612del	p.198_204del	.	.	169.0	21.0	151.0	0.0	.	26	.	.	Atlas-Indel,Pindel
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138613011	138613012	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	KIAA1244	NM_020340	exon19	c.3189_3190insG	p.P1063fs	.	.	184.0	63.0	164.0	0.0	.	236	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74283353	74283360	+	Frame_Shift_Del	DEL	TGAAGCAA	TGAAGCAA	-	novel		TCGA-2Y-A9GS-01A-12D-A382-10	TCGA-2Y-A9GS-10A-01D-A385-10	TGAAGCAA	TGAAGCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ce44141-64e4-4d9d-9971-4dc79b316d4a	27ea2725-9c48-4965-a503-91d2302923b4	.	ALB	NM_000477	exon11	c.1394_1401del	p.465_467del	.	.	153.0	72.0	193.0	0.0	.	132	.	.	Atlas-Indel,Pindel