Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125561142	125561142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AACS	NM_023928	exon3	c.G343T	p.A115S	AGAGTTGCCCTTT	.	78.0	31.0	60.0	0.0	.	92
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48319312	48319312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCA13	NM_152701	exon18	c.A8521G	p.T2841A	ACTTCCACAAGAA	.	154.0	57.0	112.0	0.0	.	521
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95858910	95858910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCC4	NM_005845	exon8	c.T1037A	p.I346N	GCTGTGATCACAC	.	72.0	28.0	57.0	0.0	.	515
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131298318	131298318	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ACSL6	NM_001009185	exon18	c.G1767A	p.Q589Q	TTCTCCCTGAGCA	.	155.0	8.0	122.0	0.0	.	229
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178541106	178541106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ADAMTS2	NM_014244	exon22	c.G3398T	p.R1133L	GATGGCCGCACCT	.	241.0	111.0	192.0	0.0	.	228
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83330629	83330629	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AP3B2	NM_004644	exon24	c.G2907A	p.G969G	CAGCTCCCCAACA	.	108.0	50.0	87.0	0.0	.	94
ARF5	381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127230141	127230141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARF5	NM_001662	exon4	c.A280G	p.S94G	GTGGACAGTAATG	.	48.0	17.0	33.0	0.0	.	228
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36273524	36273524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARHGAP33	NM_052948	exon14	c.A1256G	p.E419G	GGGAGGAGGAGCG	.	53.0	20.0	38.0	0.0	.	229
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80873588	80873588	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARNT2	NM_014862	exon17	c.A1761T	p.P587P	AATCCCATCTCAG	.	193.0	83.0	161.0	0.0	.	175
ASPHD1	253982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29912699	29912699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ASPHD1	NM_181718	exon1	c.C407A	p.P136H	GGGATCCCGGGGA	.	35.0	16.0	31.0	0.0	.	68
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105248313	105248313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ATXN7L1	NM_020725	exon12	c.A2572G	p.R858G	GAGTCCTTATCCT	.	220.0	73.0	150.0	0.0	.	90
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	69583171	69583171	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AUTS2	NM_001127231	exon3	c.A576T	p.G192G	CAGTGGAGAATCC	.	194.0	62.0	158.0	0.0	.	92
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	165548695	165548695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BCHE	NM_000055	exon2	c.G127A	p.G43R	TCATCCCTCTGAC	.	216.0	26.0	168.0	0.0	.	94
BID	637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18256445	18256445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BID	NM_197966	exon1	c.G11A	p.G4D	CCAGCACCGCTGC	.	31.0	24.0	72.0	0.0	.	1083
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32842852	32842852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BIRC6	NM_016252	exon74	c.C14455A	p.P4819T	TTGGATCCTGACA	.	85.0	30.0	51.0	0.0	.	233
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50530973	50530973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf71	NM_001135196	exon3	c.T383C	p.V128A	TGGAGGTGCCAGT	.	89.0	36.0	54.0	0.0	.	90
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103783452	103783452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf76	NM_024541	exon7	c.A562T	p.I188L	CAAATATGCTGTT	.	207.0	52.0	159.0	0.0	.	90
C2orf68	388969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85836186	85836186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C2orf68	NM_001013649	exon4	c.A383G	p.D128G	GGGTCATCACCCT	.	93.0	35.0	71.0	0.0	.	90
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	57363935	57363935	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCBE1	NM_133459	exon2	c.C138T	p.I46I	TGAGCAGATTTCT	.	115.0	34.0	113.0	0.0	.	93
CCT7	10574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73479859	73479859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCT7	NM_006429	exon12	c.A1502G	p.N501S	GGATCAATGCGCT	.	198.0	83.0	119.0	0.0	.	90
CDH10	1008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	24487960	24487960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CDH10	NM_006727	exon12	c.G2179A	p.A727T	GGGGTGCGGTGGG	.	114.0	14.0	88.0	0.0	.	253
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	57730244	57730244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CGNL1	NM_001252335	exon3	c.G47T	p.G16V	AATATGGGGTCCA	.	47.0	20.0	23.0	0.0	.	100
CLK3	1198	hgsc.bcm.edu;bcgsc.ca	37	15	74919878	74919878	+	Splice_Site	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_003992	exon9	c.913-2A>G	.	CCTTTCAGAGCTG	.	105.0	37.0	83.0	0.0	.	358
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74919883	74919895	+	Frame_Shift_Del	DEL	TGTGAGGAGAAGT	TGTGAGGAGAAGT	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	TGTGAGGAGAAGT	TGTGAGGAGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_001130028	exon9	c.1360_1372del	p.454_458del	CAGAGCTGTGAGG	.	113.0	38.0	84.0	0.0	.	358
CNKSR1	10256	broad.mit.edu;bcgsc.ca	37	1	26514778	26514778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CNKSR1	NM_006314	exon17	c.C1508T	p.A503V	GCCGGGCCCCCCC	.	87.0	6.0	39.0	0.0	.	846
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177673419	177673419	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	COL23A1	NM_173465	exon23	c.G1332T	p.S444S	CTCACCCGACGCA	.	87.0	35.0	60.0	0.0	.	91
CRHBP	1393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76249897	76249897	+	Silent	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRHBP	NM_001882	exon3	c.C219G	p.T73T	CTTCACCGCCGAC	.	99.0	35.0	74.0	0.0	.	90
CRIP2	1397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105945934	105945934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRIP2	NM_001270837	exon8	c.G793T	p.G265C	AACACCGGTGCGG	.	79.0	34.0	60.0	0.0	.	226
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41386034	41386034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CYP2A7	NM_000764	exon4	c.C609A	p.S203R	CATCATGCTCAGC	.	108.0	46.0	74.0	0.0	.	93
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212576873	212576873	+	Missense_Mutation	SNP	C	C	G	rs149272231	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ERBB4	NM_001042599	exon9	c.G1026C	p.L342F	TGACATCAATGAT	.	140.0	73.0	134.0	0.0	C|1.000;T|0.000	1461
FERD3L	222894	broad.mit.edu;mdanderson.org	37	7	19184881	19184881	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	FERD3L	NM_152898	exon1	c.C105A	p.P35P	GACCCCGGGTGCG	.	27.0	6.0	26.0	0.0	.	153
GABPB1	2553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50596296	50596296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GABPB1	NM_016654	exon3	c.A143G	p.Y48C	TGACCATACTGTG	.	121.0	44.0	87.0	0.0	.	153
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120589170	120589171	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4087_4088del	p.1363_1363del	GGTGGCAAGCAGC	.	72.0	22.0	65.0	0.0	.	94
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120589173	120589174	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4084_4085del	p.1362_1362del	GGCAAGCAGCTGG	.	66.0	22.0	63.0	0.0	.	94
GPHB5	122876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63784460	63784460	+	RNA	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GPHB5	.	.	.	.	GCACAGCCCACAA	.	108.0	45.0	77.0	0.0	.	67
GRM3	2913	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	86468656	86468656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GRM3	NM_000840	exon4	c.C1826A	p.A609E	TCAAAGCATCGGG	.	79.0	24.0	46.0	1.0	.	528
HAMP	57817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35775694	35775694	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HAMP	NM_021175	exon2	c.G93A	p.T31T	ACAGACGGGACAA	.	113.0	41.0	74.0	0.0	.	90
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240158361	240158361	+	Splice_Site	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HDAC4	NM_006037	exon4	c.23-1G>C	.	GTCCATCTGGAGA	.	169.0	86.0	144.0	0.0	.	291
HEPACAM2	253012	hgsc.bcm.edu;broad.mit.edu	37	7	92826814	92826814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HEPACAM2	NM_001039372	exon5	c.1122delA	p.K374fs	TTGATATTTTTTC	.	275.0	17.0	218.0	0.0	.	157
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	63988457	63988457	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HERC1	NM_003922	exon27	c.A4987T	p.R1663X	TCAATCTGCTTCC	.	147.0	58.0	112.0	0.0	.	666
HES1	3280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193854425	193854425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HES1	NM_005524	exon2	c.A128T	p.E43V	TTATGGAGAAAAG	.	190.0	87.0	137.0	0.0	.	659
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34329977	34329977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HMGB4	NM_145205	exon2	c.C185A	p.A62D	ATGAAGCCCTGGC	.	117.0	18.0	88.0	0.0	.	90
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121416684	121416684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HNF1A	NM_000545	exon1	c.T113C	p.L38P	ACCTCCTGGCTGG	.	127.0	44.0	112.0	0.0	.	1745
IGFL4	444882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46543655	46543655	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	IGFL4	NM_001002923	exon3	c.C90T	p.C30C	TGGCTGGCATAGC	.	101.0	45.0	65.0	0.0	.	90
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121712300	121712300	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ILDR1	NM_001199799	exon7	c.1296delG	p.W432fs	CGGCCGCCAGCGT	.	109.0	47.0	66.0	0.0	.	91
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107704317	107704317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LAMB4	NM_007356	exon22	c.T2950C	p.C984R	GGCTGCAGGACTC	.	242.0	92.0	183.0	0.0	.	140
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96360250	96360250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LNPEP	NM_005575	exon15	c.G2587A	p.V863M	ACAACTGTGTTCA	.	74.0	8.0	56.0	0.0	.	229
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56949612	56949612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LRRC55	NM_001005210	exon1	c.C245T	p.P82L	GCTGCCCCGTCCT	.	90.0	36.0	60.0	0.0	.	90
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33413881	33413881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LTBP1	NM_206943	exon7	c.A1664G	p.Q555R	AGACACAGCTTGG	.	103.0	35.0	84.0	0.0	.	230
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20198542	20198542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MACC1	NM_182762	exon5	c.A1442G	p.H481R	AACAAGTGCATCT	.	121.0	54.0	98.0	0.0	.	93
MAPK14	1432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36075327	36075327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MAPK14	NM_139012	exon11	c.G937A	p.D313N	TACCACGATCCTG	.	128.0	50.0	80.0	0.0	.	1444
MAPK6	5597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52357167	52357167	+	Silent	SNP	A	A	T	rs201094277		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MAPK6	NM_002748	exon6	c.A2136T	p.T712T	TCAAACATACAGC	.	180.0	67.0	145.0	1.0	A|0.999;T|0.001	1403
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60088411	60088411	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MED13	NM_005121	exon9	c.C1467T	p.D489D	ATCTGCGTCCATG	.	351.0	34.0	287.0	0.0	.	136
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179093112	179093112	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MFN1	NM_033540	exon10	c.G1080T	p.L360L	AAACCTGGCAGCT	.	229.0	72.0	187.0	1.0	.	155
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73009991	73009991	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MLXIPL	NM_032951	exon15	c.G2286T	p.T762T	GTGCAGCGTACGG	.	126.0	50.0	90.0	0.0	.	91
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102816423	102816423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.G1267C	p.D423H	GGAAGTCTTCTTC	.	76.0	23.0	67.0	0.0	.	229
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102816459	102816459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.A1231G	p.I411V	CCATAATATGGTT	.	74.0	23.0	61.0	0.0	.	229
MSH4	4438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	76262910	76262910	+	Silent	SNP	T	T	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MSH4	NM_002440	exon1	c.T240G	p.A80A	GCCAGCTCAAGGC	.	36.0	12.0	28.0	0.0	.	660
MVP	9961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29848051	29848051	+	Silent	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MVP	NM_017458	exon7	c.G681C	p.L227L	AGCCCTGCACCTC	.	43.0	10.0	27.0	0.0	.	93
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26422950	26422950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MYO18B	NM_032608	exon43	c.C7010G	p.T2337R	GGGGCACAACCCT	.	34.0	22.0	23.0	0.0	.	142
NAT8	9027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73868638	73868638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NAT8	NM_003960	exon2	c.C118A	p.P40T	TTCGAGGCAGCTT	.	86.0	36.0	68.0	0.0	.	91
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329069	33329069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NCOA6	NM_014071	exon11	c.C4991A	p.S1664Y	ATTGAGGATGAAT	.	113.0	31.0	82.0	0.0	.	292
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5604082	5604082	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NTF3	NM_001102654	exon2	c.C741T	p.L247L	TAAACTCGTGGGC	.	55.0	34.0	76.0	0.0	.	205
OLA1	29789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175111522	175111522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OLA1	NM_013341	exon2	c.G22A	p.D8N	TTCCATCACCTCC	.	288.0	30.0	138.0	0.0	.	132
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45799382	45799382	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR13A1	NM_001004297	exon4	c.C489A	p.A163A	GGCTGTGGCCAGC	.	57.0	15.0	37.0	0.0	.	68
OR5L2	26338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55594866	55594866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR5L2	NM_001004739	exon1	c.C172A	p.P58T	CACACCCCCGTGT	.	269.0	109.0	252.0	0.0	.	69
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55583049	55583049	+	Silent	SNP	T	T	C	rs141623033		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDH15	NM_001142763	exon35	c.A4458G	p.Q1486Q	AACTTGTTGATGT	.	130.0	54.0	115.0	0.0	T|0.999;C|0.000	193
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140203515	140203515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDHA5	NM_018908	exon1	c.G2155A	p.A719T	TACACCGCGCTGC	.	135.0	16.0	92.0	0.0	.	137
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82544719	82544719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCLO	NM_014510	exon7	c.C12583A	p.L4195I	CAATTAGTGATTT	.	185.0	66.0	137.0	1.0	.	29
PDZD9	255762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21995863	21995863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PDZD9	NM_173806	exon3	c.C340T	p.H114Y	CAGGGTGATGCAC	.	247.0	56.0	261.0	0.0	.	91
PIP	5304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	142836665	142836665	+	Missense_Mutation	SNP	C	C	T	rs148216903	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PIP	NM_002652	exon4	c.C371T	p.P124L	TCTGCCCTGATGA	.	240.0	18.0	158.0	0.0	C|0.997;G|0.003	91
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123498529	123498529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PITPNM2	NM_020845	exon3	c.C139T	p.P47S	TGTACGGCCGGTT	.	141.0	64.0	115.0	0.0	.	228
PRKX	5613	hgsc.bcm.edu;bcgsc.ca	37	X	3533926	3533926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.C881A	p.A294E	TCATTCGCCCCGT	.	141.0	105.0	112.0	0.0	.	540
PRKX	5613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	3533925	3533925	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.882delG	p.A294fs	ATCATTCGCCCCG	.	142.0	102.0	114.0	0.0	.	540
PROSER1	80209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39586338	39586338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_025138	exon12	c.C2594A	p.S865Y	AAAACAGAACTGC	.	191.0	74.0	144.0	0.0	.	.
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40902988	40902988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRX	NM_181882	exon7	c.C1271T	p.S424F	CCAAGGGAGGGCA	.	139.0	52.0	85.0	0.0	.	92
PSTPIP1	9051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77310567	77310567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PSTPIP1	NM_003978	exon2	c.A115T	p.M39L	AAAGACATGGAGG	.	77.0	31.0	53.0	0.0	.	23
PTCHD3	374308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27687437	27687437	+	Missense_Mutation	SNP	C	C	A	rs139600575	byfrequency	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTCHD3	NM_001034842	exon4	c.G2090T	p.W697L	TCTAACCAAAACT	.	212.0	76.0	181.0	1.0	C|0.999;A|0.001	94
PTPRN2	5799	bcgsc.ca;mdanderson.org	37	7	157449210	157449210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRN2	NM_002847	exon14	c.C2035A	p.P679T	GGTCTGGTGGCCG	.	74.0	27.0	35.0	1.0	.	295
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15739913	15739913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRO	NM_030667	exon24	c.G3338C	p.S1113T	CAGAAAGTATCCT	.	91.0	25.0	120.0	0.0	.	271
RAB1B	81876	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66039304	66039304	+	Silent	SNP	A	A	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAB1B	NM_030981	exon2	c.A51C	p.S17S	CGACTCAGGCGTG	.	131.0	52.0	95.0	1.0	.	227
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51661661	51661661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAD54L2	NM_015106	exon3	c.C232G	p.Q78E	TCATCTCAGTCTG	.	113.0	34.0	93.0	0.0	.	93
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103198496	103198496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RELN	NM_173054	exon37	c.5530delG	p.E1844fs	GTCCTTCCTGAAA	.	285.0	105.0	192.0	0.0	.	574
SCRT1	83482	broad.mit.edu;mdanderson.org	37	8	145557361	145557361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_031309	exon2	c.C533A	p.A178E	GCGCGCGCCTCGG	.	26.0	6.0	21.0	0.0	.	.
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83606504	83606504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SEMA3A	NM_006080	exon15	c.G1661T	p.R554I	TGTCGTCTTGTGC	.	345.0	133.0	324.0	0.0	.	156
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38347895	38347895	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC22A14	NM_004803	exon1	c.C378T	p.G126G	CAATGGCAGTTTC	.	114.0	24.0	122.0	0.0	.	90
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19576992	19576992	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A2	NM_020344	exon5	c.C1158A	p.L386L	CTTGTGGAGAATT	.	104.0	64.0	118.0	0.0	.	517
SLC24A3	57419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19673903	19673903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A3	NM_020689	exon13	c.C1325T	p.S442L	TTCCAGCGGGTAA	.	120.0	51.0	97.0	1.0	.	91
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66475653	66475653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SPTBN2	NM_006946	exon11	c.C1309T	p.R437W	TCTCCCGCATGGC	.	146.0	34.0	103.0	0.0	.	155
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35806150	35806150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SRPK1	NM_003137	exon15	c.G1747T	p.A583S	TTCCTGCCACAAT	.	98.0	38.0	64.0	0.0	.	359
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	30000996	30000997	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TJP1	NM_003257	exon25	c.4616_4617del	p.1539_1539del	GCGTTCAAATGGT	.	288.0	107.0	189.0	0.0	.	95
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77714715	77714715	+	Missense_Mutation	SNP	G	G	A	rs180758756	by1000genomes	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_020431	exon19	c.G1627A	p.A543T	AACGGCGCCTTCT	.	106.0	40.0	93.0	0.0	G|0.999;A|0.000	.
TOP2A	7153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38546362	38546362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TOP2A	NM_001067	exon34	c.C4322A	p.T1441N	CTTTTAGTTCCTT	.	248.0	107.0	211.0	1.0	.	655
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	TP53,NS,haematopoietic_neoplasm,0	TP53	NM_000546	exon7	c.560-1G>A	.	CCAGACCTAAGAG	.	71.0	41.0	87.0	0.0	.	70225
TRA2B	6434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185641706	185641706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRA2B	NM_004593	exon4	c.C400A	p.L134I	CTCTTAGATCTCT	.	142.0	52.0	91.0	0.0	.	92
TRIM71	131405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32932669	32932669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRIM71	NM_001039111	exon4	c.G1973A	p.G658D	CAGCCGGCGTGGC	.	51.0	17.0	28.0	0.0	.	92
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19513738	19513738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	UBR4	NM_020765	exon13	c.A1552T	p.I518L	TCTGTATGGAGGT	.	82.0	19.0	60.0	0.0	.	612
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76814798	76814798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	USP36	NM_025090	exon10	c.C974G	p.T325S	GAAAGGGTTAAGA	.	162.0	55.0	138.0	0.0	.	659
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177093603	177093603	+	Silent	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	WDR17	NM_170710	exon26	c.A3297G	p.V1099V	AACTGTAAAATAT	.	211.0	21.0	271.0	1.0	.	95
ZFP36L1	677	broad.mit.edu;bcgsc.ca	37	14	69256313	69256313	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZFP36L1	NM_001244701	exon3	c.C1161T	p.S387S	GGTCGGGGAGTCT	.	94.0	43.0	51.0	1.0	.	91
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88847522	88847522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZNF804B	NM_181646	exon2	c.C162A	p.N54K	GGCAAACTTTTAC	.	114.0	41.0	83.0	0.0	.	101
UNC13C	440279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54307530	54307531	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AG	AG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	p.V811L	GGAAGTAGTATGG	.	85.0	37.0	74.0	2.0	.	.