Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AADAT 51166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 170991792 170991792 + Silent SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . AADAT NM_182662 exon7 c.A666G p.K222K ATCATATTTTCTT . 157.0 69.0 173.0 0.0 . 90 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1051046 1051046 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ABCA7 NM_019112 exon19 c.T2679A p.F893L GCTGTTTGACATG . 24.0 14.0 47.0 0.0 . 98 ABCE1 6059 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 146032129 146032129 + Frame_Shift_Del DEL A A - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ABCE1 NM_002940 exon8 c.623delA p.H208fs TAACCCACCTAAA . 122.0 47.0 115.0 0.0 . 91 ACACA 31 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 35545226 35545226 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ACACA NM_198834 exon39 c.G4767A p.R1589R TGCTGTCCTGGAG . 105.0 43.0 153.0 1.0 . 154 ACAP1 9744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7254302 7254302 + Silent SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ACAP1 NM_014716 exon21 c.G2106A p.A702A TGAAGCGGCCCAG . 30.0 20.0 53.0 0.0 . 153 ACSM2A 123876 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 20476838 20476838 + Splice_Site SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ACSM2A NM_001010845 exon4 c.178-1G>A . TCCTCAGGCTGGC . 202.0 73.0 190.0 2.0 . 91 ACVR2A 92 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 148674983 148674983 + Silent SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ACVR2A NM_001616 exon6 c.A804G p.A268A CACAGCATTTCAT . 110.0 29.0 127.0 0.0 . 831 ADAD1 132612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 123302161 123302161 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ADAD1 NM_139243 exon4 c.C187A p.P63T CCAGAGCCGTTGC . 357.0 96.0 289.0 0.0 . 90 AGAP1 116987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 237032735 237032735 + Missense_Mutation SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . AGAP1 NM_001037131 exon18 c.A2543G p.N848S GGAACAACAGCAG . 124.0 26.0 80.0 0.0 . 93 AGO4 192670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 36292423 36292423 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_017629 exon7 c.G835T p.A279S CGGCCAGCCAGTC . 47.0 25.0 59.0 0.0 . . ANK1 286 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 41574509 41574514 + In_Frame_Del DEL AATATT AATATT - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 AATATT AATATT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ANK1 NM_001142446 exon13 c.1460_1465del p.487_489del GGAGTAAATATTT . 225.0 49.0 240.0 0.0 . 716 ANKIB1 54467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 92015870 92015870 + Missense_Mutation SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ANKIB1 NM_019004 exon12 c.T1665G p.H555Q AAAACATAGTTCG . 278.0 51.0 196.0 0.0 . 432 ANKS1B 56899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 99640465 99640465 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_152788 exon13 c.C1934G p.P645R GGCAAAGGACTGT . 180.0 73.0 206.0 0.0 . . ANKS6 203286 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 101498813 101498813 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ANKS6 NM_173551 exon15 c.C2604G p.S868R ACAGGGGCTGTTG . 38.0 13.0 38.0 0.0 . 92 APBB2 323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 40892391 40892391 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . APBB2 NM_004307 exon12 c.G1519A p.D507N CATTGTCGCGGCC . 57.0 24.0 64.0 0.0 . 92 APC2 10297 hgsc.bcm.edu;broad.mit.edu 37 19 1468353 1468354 + Nonsense_Mutation INS - - AGT novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . APC2 NM_005883 exon15 c.5053_5054insAGT p.E1685delinsEX AGCGTGGAGTGGC . 36.0 25.0 50.0 0.0 . 290 APEX1 328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20925548 20925548 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . APEX1 NM_080648 exon5 c.T838A p.W280R GTTGGTTGGCGCC . 156.0 52.0 175.0 0.0 . 661 ARID3B 10620 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74836589 74836589 + Silent SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ARID3B NM_006465 exon2 c.T312C p.D104D TGGGGATGATGAA . 144.0 27.0 187.0 0.0 . 90 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 177030375 177030375 + Missense_Mutation SNP G G T rs138326291 alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ASTN1 NM_004319 exon2 c.C310A p.P104T CCAAAGGGATATC . 63.0 50.0 79.0 0.0 G|1.000;C|0.000 319 ATP8A2 51761 broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 26043153 26043153 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ATP8A2 NM_016529 exon2 c.G115T p.D39Y GCAGAGGATGAGA . 66.0 20.0 51.0 1.0 . 138 ATP9A 10079 hgsc.bcm.edu;broad.mit.edu 37 20 50292712 50292712 + Missense_Mutation SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ATP9A NM_006045 exon10 c.G835C p.E279Q GGAGTTCTCTGCC . 132.0 7.0 105.0 0.0 . 94 AVL9 23080 ucsc.edu;bcgsc.ca;mdanderson.org 37 7 32623585 32623585 + RNA SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . AVL9 . . . . GCTCCCAGGCTGT . 145.0 60.0 180.0 0.0 . 90 B3GAT1 27087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134252717 134252717 + Missense_Mutation SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . B3GAT1 NM_054025 exon4 c.A805C p.S269R CCTGGCTTCGCTG . 76.0 34.0 76.0 0.0 . 91 BCL11B 64919 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 14 99640967 99640967 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . BCL11B NM_138576 exon4 c.C2206A p.P736T CGAAGGGCGACTG . 33.0 14.0 14.0 0.0 . 1147 BNIP3 664 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 133787338 133787338 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . BNIP3 NM_004052 exon2 c.T156A p.H52Q AGACTCATGCTGT . 40.0 9.0 61.0 0.0 . 227 BSN 8927 hgsc.bcm.edu;broad.mit.edu 37 3 49690047 49690048 + In_Frame_Ins INS - - AGCAGC novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . BSN NM_003458 exon5 c.3058_3059insAGCAGC p.K1020delinsKQQ GAAGCAAAGCAGC . 46.0 17.0 44.0 0.0 . 97 C2orf71 388939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 29297116 29297116 + Silent SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . C2orf71 NM_001029883 exon1 c.A12G p.T4T TGAAGGTGTACAC . 47.0 17.0 52.0 0.0 . 91 C3 718 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 6678293 6678293 + Frame_Shift_Del DEL C C - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . C3 NM_000064 exon40 c.4720delG p.D1574fs CCTCATCCGAGCC . 51.0 29.0 94.0 0.0 . 95 CAST 831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 96083056 96083056 + Missense_Mutation SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CAST NM_001042440 exon16 c.A1169G p.D390G ATAAAGATGGAAA . 279.0 77.0 319.0 0.0 . 517 CCDC146 57639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 76889445 76889445 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CCDC146 NM_020879 exon8 c.A878T p.E293V TAAAGGAAGTTGA . 178.0 31.0 146.0 0.0 . 70 CCDC33 80125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74560789 74560789 + Missense_Mutation SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e CCDC33,NS,carcinoma,+1 CCDC33 NM_025055 exon5 c.T536C p.M179T ACCACATGGCTCT . 25.0 6.0 32.0 0.0 . 95 CCZ1 51622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 5944735 5944735 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CCZ1 NM_015622 exon7 c.C533T p.T178M TGCAAACGCTACA . 638.0 208.0 737.0 0.0 . 44 CEACAM3 1084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42301829 42301829 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CEACAM3 NM_001815 exon2 c.A373T p.I125L CAAGTCATAAAGT . 63.0 38.0 99.0 0.0 . 91 CELA2A 63036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 15788106 15788106 + Silent SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CELA2A NM_033440 exon3 c.G180T p.G60G CGGAGGGTCCCTG . 122.0 39.0 142.0 0.0 . 92 CLEC16A 23274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 11056338 11056338 + Missense_Mutation SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CLEC16A NM_015226 exon3 c.T236G p.V79G TGTTTGTTTTCTT . 94.0 38.0 99.0 0.0 . 92 CNGA3 1261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 99013614 99013614 + Missense_Mutation SNP C C A rs183838250 TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CNGA3 NM_001298 exon8 c.C1981A p.R661S AAGCAGCGTCTCA . 49.0 20.0 48.0 0.0 C|0.999;A|0.000 96 CNGA4 1262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6261787 6261787 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CNGA4 NM_001037329 exon4 c.G763A p.V255I CTGGCCGTCATGG . 76.0 24.0 60.0 0.0 . 91 COL22A1 169044 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139620230 139620230 + Silent SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . COL22A1 NM_152888 exon57 c.C3981A p.G1327G ATTCTTGCCCTGG . 68.0 29.0 54.0 1.0 . 103 CSF2RB 1439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37334154 37334154 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CSF2RB NM_000395 exon14 c.G2304T p.E768D TGTGGAGCTCCCT . 36.0 16.0 33.0 0.0 . 93 CSNK1A1L 122011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 37679220 37679220 + Silent SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CSNK1A1L NM_145203 exon1 c.G174C p.L58L CTCATACAGCAAC . 48.0 18.0 54.0 0.0 . 396 CYP3A43 64816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99434099 99434099 + Missense_Mutation SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CYP3A43 NM_057096 exon2 c.T95G p.L32R ATAAACTTTTTAA . 262.0 124.0 151.0 0.0 . 92 CYP3A43 64816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 99447235 99447235 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CYP3A43 NM_057096 exon7 c.C588T p.L196L TTCTCTCAACAAT . 246.0 145.0 173.0 0.0 . 92 CYTIP 9595 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 158283867 158283867 + Nonsense_Mutation DEL A A - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . CYTIP NM_004288 exon6 c.542delT p.L181X ACCTTTAAAACCT . 97.0 38.0 91.0 0.0 . 93 DAGLB 221955 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6474591 6474591 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DAGLB NM_139179 exon4 c.G480A p.G160G CATTTTCCCCCCA . 72.0 28.0 61.0 0.0 . 70 DBN1 1627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176893949 176893949 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DBN1 NM_080881 exon8 c.C676T p.R226C GGTAGCGCCGCTC . 31.0 14.0 39.0 0.0 . 587 DEF6 50619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 35285774 35285774 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DEF6 NM_022047 exon6 c.C914T p.A305V GGACAGCTGGTGA . 56.0 20.0 72.0 0.0 . 227 DEFB114 245928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49928115 49928115 + Missense_Mutation SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DEFB114 NM_001037499 exon2 c.G100C p.G34R AACGACCGTAACG . 121.0 54.0 126.0 0.0 . 91 DLGAP1 9229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 3879551 3879551 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DLGAP1 NM_001242761 exon4 c.C518T p.A173V GCCTGCGCCTCGT . 31.0 11.0 26.0 0.0 . 229 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76490821 76490821 + Missense_Mutation SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DNAH17 NM_173628 exon40 c.G6124C p.A2042P CCTCTGCCCGGCT . 33.0 15.0 32.0 0.0 . 142 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 196771386 196771387 + Frame_Shift_Ins INS - - A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DNAH7 NM_018897 exon27 c.4332_4333insT p.L1444fs TACCTTCAGGTTA . 302.0 106.0 326.0 0.0 . 102 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169111319 169111319 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DOCK2 NM_004946 exon8 c.G726C p.M242I CTTCATGTCTCTC . 147.0 44.0 96.0 0.0 . 97 DUSP27 92235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167096118 167096118 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . DUSP27 NM_001080426 exon5 c.G1750A p.V584I TCCGACGTCAGCC . 46.0 31.0 37.0 0.0 . 71 EDNRB 1910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 78477336 78477336 + Silent SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . EDNRB NM_001201397 exon4 c.G1026C p.L342L GATTCGCAGATAA . 87.0 26.0 130.0 0.0 . 522 EFR3B 22979 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 25351059 25351060 + Frame_Shift_Ins INS - - G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_014971 exon6 c.493_494insG p.M165fs ATTCGAATGTCAG . 63.0 20.0 64.0 0.0 . . EIF4E1B 253314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176070686 176070686 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_001099408 exon5 c.G247T p.D83Y TGGCAGGACAACC . 90.0 25.0 75.0 0.0 . . EMP1 2012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 13366481 13366481 + Nonsense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . EMP1 NM_001423 exon3 c.C147A p.C49X TAGCTGCAGTGAC . 254.0 69.0 294.0 0.0 . 90 ERCC3 2071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 128038082 128038082 + Nonsense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ERCC3 NM_000122 exon9 c.G1468T p.E490X TGGCTTCGTAGAG . 114.0 40.0 107.0 0.0 . 723 ERN2 10595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23703609 23703609 + Missense_Mutation SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ERN2 NM_033266 exon18 c.A2288G p.Y763C AGCACGTAGTAGA . 21.0 8.0 21.0 0.0 . 322 EVPL 2125 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 74014610 74014611 + Frame_Shift_Ins INS - - CCCT novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . EVPL NM_001988 exon12 c.1356_1357insAGGG p.G452fs GCCAGGGCCCTGC . 124.0 26.0 77.0 0.0 . 93 EXT1 2131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 118817113 118817113 + Missense_Mutation SNP A A C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . EXT1 NM_000127 exon10 c.T1903G p.S635A AATGGGAGTATAG . 177.0 74.0 101.0 0.0 . 660 F2RL3 9002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 17001135 17001135 + Silent SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . F2RL3 NM_003950 exon2 c.G861T p.V287V CGCAGTGGTGCTG . 36.0 19.0 18.0 0.0 . 226 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 34149528 34149528 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . FAM47A NM_203408 exon1 c.C868G p.P290A CTGTGGGTTCGTC . 71.0 56.0 70.0 0.0 . 134 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 126367528 126367528 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . FAT4 NM_024582 exon8 c.G7274A p.R2425K TAGATAGGGAAAC . 69.0 30.0 92.0 0.0 . 108 FBXL5 26234 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 15613952 15613952 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . FBXL5 NM_012161 exon10 c.G1936T p.D646Y CCAAATCCTGCAG . 204.0 88.0 230.0 1.0 . 226 FGFR2 2263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 123274695 123274695 + Missense_Mutation SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . FGFR2 NM_022970 exon9 c.A1226G p.D409G CTGAAGTCTGGCT . 158.0 31.0 172.0 0.0 . 2607 FNIP1 96459 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 131007517 131007517 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . FNIP1 NM_133372 exon14 c.T2620A p.C874S TTGTACACAATAT . 135.0 58.0 110.0 0.0 . 92 FTMT 94033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 121188325 121188325 + Missense_Mutation SNP G G A rs149286328 byfrequency;alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . FTMT NM_177478 exon1 c.G667A p.A223T CCGGATGCTGGCC . 76.0 24.0 57.0 0.0 G|0.999;T|0.001 91 GAS7 8522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 9846500 9846500 + Silent SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . GAS7 NM_201433 exon7 c.G669T p.L223L CTGGAGCAGTAGT . 36.0 24.0 84.0 0.0 . 1083 GIMAP4 55303 hgsc.bcm.edu;bcgsc.ca 37 7 150269571 150269571 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . GIMAP4 NM_018326 exon3 c.T413A p.L138Q AGATCCTGAAAAT . 66.0 18.0 91.0 0.0 . 91 GPR114 221188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 16 57604440 57604440 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . GPR114 NM_153837 exon10 c.A1201T p.M401L CAGAACATGTCCA . 20.0 8.0 18.0 0.0 . 90 GPR15 2838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 98251158 98251158 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . GPR15 NM_005290 exon1 c.C281A p.A94E AAGAAGCATCTCT . 85.0 32.0 115.0 0.0 . 91 GSE1 23199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 85696964 85696964 + Silent SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_014615 exon11 c.G2388A p.L796L GTTTTTGCAACTT . 20.0 9.0 20.0 0.0 . . GTPBP1 9567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 39125539 39125539 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . GTPBP1 NM_004286 exon11 c.G1789T p.G597C AAAAAGGGCCCCC . 70.0 18.0 76.0 0.0 . 91 HAP1 9001 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39881005 39881005 + Missense_Mutation SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . HAP1 NM_177977 exon11 c.A1808C p.H603P GCCCCGTGGGGGC . 17.0 5.0 36.0 1.0 . 92 HDAC4 9759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 240056268 240056268 + Silent SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . HDAC4 NM_006037 exon10 c.C1050T p.S350S GGGCAAGGATGGC . 71.0 16.0 52.0 0.0 . 291 HLA-DMA 3108 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 32918508 32918508 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . HLA-DMA NM_006120 exon2 c.G161A p.S54N CTGGGACTCCCAT . 46.0 13.0 45.0 0.0 . 90 HPDL 84842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 45793225 45793225 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . HPDL NM_032756 exon1 c.C405T p.R135R GGAGCGCGCTGGC . 104.0 40.0 80.0 0.0 . 90 HPR 3250 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 72108240 72108240 + Frame_Shift_Del DEL G G - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . HPR NM_020995 exon3 c.149delG p.R50fs TGTTTCGCTACCA . 347.0 106.0 355.0 0.0 . 515 IL12B 3593 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 158753702 158753702 + Splice_Site SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . IL12B NM_002187 exon3 c.88+1G>A . TGGTTACCATCTT . 111.0 31.0 69.0 1.0 . 90 IRX1 79192 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 3596419 3596419 + Frame_Shift_Del DEL C C - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . IRX1 NM_024337 exon1 c.200delC p.A67fs CGGCGGCGGGGCC . 38.0 13.0 28.0 0.0 . 228 ISM1 140862 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 13269286 13269286 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ISM1 NM_080826 exon4 c.G743A p.C248Y ACGCGTGCACTGC . 67.0 28.0 49.0 1.0 . 68 ITGA8 8516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 15688879 15688879 + Silent SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ITGA8 NM_003638 exon12 c.A1173C p.A391A TAAGTGTGCCATA . 79.0 26.0 80.0 0.0 . 230 JKAMP 51528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 59961929 59961929 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . JKAMP NM_016475 exon4 c.G445T p.A149S CATGAAGCCGTCT . 190.0 69.0 211.0 0.0 . 67 KEAP1 9817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10610444 10610444 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . KEAP1 NM_012289 exon2 c.C266T p.P89L GCGGCCGGTGCAT . 38.0 30.0 54.0 0.0 . 637 KIAA1211L 343990 hgsc.bcm.edu;broad.mit.edu 37 2 99439712 99439712 + Frame_Shift_Del DEL C C - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_207362 exon7 c.1024delG p.A342fs GCTCGGCGAGCTC . 19.0 11.0 12.0 0.0 . . KIAA1407 57577 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 113724658 113724658 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . KIAA1407 NM_020817 exon10 c.C1565T p.T522I CCCAGGGTCTTGT . 198.0 69.0 210.0 2.0 . 92 KIAA1609 57707 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84514214 84514214 + Missense_Mutation SNP G G A rs149378530 alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . KIAA1609 NM_020947 exon7 c.C1178T p.P393L AGCTGCGGGCTGT . 91.0 43.0 88.0 0.0 G|1.000;T|0.000 92 KIF1B 23095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 10408742 10408742 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . KIF1B NM_015074 exon35 c.T3762A p.H1254Q TATCCATGAGAAG . 79.0 25.0 78.0 0.0 . 93 KIF26B 55083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 245530263 245530263 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . KIF26B NM_018012 exon3 c.C593A p.A198D AGGAGGCCATCCA . 67.0 29.0 69.0 0.0 . 25 KRT9 3857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 39723992 39723992 + Nonsense_Mutation SNP C C A rs201817471 alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . KRT9 NM_000226 exon7 c.G1405T p.G469X CAGCTCCGGAGGA . 29.0 17.0 32.0 0.0 C|0.999;G|0.000 92 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 21523852 21523852 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . LAMA3 NM_198129 exon69 c.C9127A p.R3043S AAAGGACGTCTGG . 74.0 31.0 85.0 0.0 . 100 LHX1 3975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35298050 35298050 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . LHX1 NM_005568 exon3 c.C541T p.R181W AAGCGGCGGGGAC . 39.0 14.0 28.0 0.0 . 92 LMBR1 64327 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 156619307 156619308 + Frame_Shift_Ins INS - - G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . LMBR1 NM_022458 exon4 c.311_312insC p.L104fs TGAATCAGGGAGC . 41.0 29.0 60.0 0.0 . 90 LRFN2 57497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 40360374 40360374 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . LRFN2 NM_020737 exon3 c.T1678A p.C560S GGTTGCAGACCTT . 51.0 21.0 52.0 0.0 . 93 LRPPRC 10128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 44162019 44162019 + Splice_Site SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . LRPPRC NM_133259 exon25 c.2505-2A>T . CGCCCCTTAGAAA . 108.0 43.0 144.0 0.0 . 93 LRRC4B 94030 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 51021453 51021453 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . LRRC4B NM_001080457 exon3 c.C1517T p.P506L CCCCGCGGCTGCA . 15.0 14.0 15.0 0.0 . 205 MAP3K19 80122 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 135744289 135744289 + Missense_Mutation SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_025052 exon7 c.A2153G p.Q718R TTTTTCTGAGAAA . 303.0 119.0 312.0 2.0 . . MATK 4145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 3783884 3783884 + Silent SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MATK NM_002378 exon6 c.C513T p.R171R CAGCACGCGGTAG . 59.0 39.0 80.0 0.0 . 521 MATN3 4148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 20202976 20202976 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_002381 exon3 c.C862T p.H288Y CACAGTGGTGCTT . 89.0 39.0 68.0 0.0 . . METTL21B 25895 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 58166537 58166537 + Silent SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . METTL21B NM_015433 exon1 c.T30A p.S10S CGAATCTGAGTCG . 73.0 26.0 52.0 0.0 . 514 MLL3 58508 hgsc.bcm.edu;broad.mit.edu 37 7 151927092 151927092 + Frame_Shift_Del DEL G G - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MLL3 NM_170606 exon18 c.2892delC p.G964fs AAAACTGCCACAA . 575.0 44.0 738.0 0.0 . 1398 MMACHC 25974 broad.mit.edu;ucsc.edu 37 1 45966041 45966041 + Nonsense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MMACHC NM_015506 exon1 c.G37T p.E13X AAGATCGAGGACA . 120.0 49.0 123.0 1.0 . 90 MNDA 4332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158817562 158817562 + Silent SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MNDA NM_002432 exon6 c.T1032C p.N344N GGATAATACAGGA . 42.0 36.0 58.0 0.0 . 94 MS4A2 2206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 59861474 59861474 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MS4A2 NM_000139 exon6 c.G575T p.G192V TTCTGGGACTTGG . 89.0 38.0 113.0 0.0 . 91 MUC17 140453 hgsc.bcm.edu;bcgsc.ca 37 7 100682890 100682890 + Silent SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MUC17 NM_001040105 exon3 c.T8193C p.S2731S CAGTTCTTCTCCT . 75.0 5.0 58.0 0.0 . 95 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 100682876 100682876 + Missense_Mutation SNP G G A rs143199514 TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MUC17 NM_001040105 exon3 c.G8179A p.A2727T ACTTCTGCTGAAG . 78.0 9.0 55.0 0.0 G|1.000;A|0.000 95 MYH1 4619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10411951 10411951 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MYH1 NM_005963 exon16 c.G1626A p.M542I GGGGAACATGCAC . 46.0 33.0 81.0 0.0 . 171 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 10307807 10307807 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MYH8 NM_002472 exon22 c.T2528A p.L843H CTCTTGAGGAGGG . 257.0 169.0 411.0 1.0 . 101 MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 76925722 76925722 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . MYO7A NM_000260 exon49 c.G6629T p.G2210V AGCGGGGCTCCAG . 60.0 26.0 66.0 0.0 . 138 NFATC2 4773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 50071174 50071174 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . NFATC2 NM_012340 exon6 c.G1760A p.S587N AGGCAGCTGTCTG . 120.0 71.0 74.0 0.0 . 92 NLRP3 114548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247588229 247588229 + Missense_Mutation SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . NLRP3 NM_183395 exon3 c.A1484G p.Q495R GACTGCAGAAGGC . 40.0 28.0 21.0 0.0 . 674 NOLC1 9221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 103917282 103917282 + Missense_Mutation SNP T T G rs139625185 byfrequency TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . NOLC1 NM_004741 exon4 c.T411G p.D137E TGATGATGAGGAG . 50.0 21.0 54.0 0.0 T|0.999;G|0.001 91 NPR1 4881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 153653014 153653014 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . NPR1 NM_000906 exon2 c.C759T p.T253T CAGAACCCTCATG . 97.0 82.0 88.0 0.0 . 393 NUAK1 9891 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 106532406 106532406 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . NUAK1 NM_014840 exon1 c.C26A p.A9E TCCCCCGCCACAG . 25.0 17.0 23.0 0.0 . 359 NUAK1 9891 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 12 106532400 106532400 + Missense_Mutation SNP T T G rs201298691 alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . NUAK1 NM_014840 exon1 c.A32C p.D11A GGGCGGTCCCCCG . 24.0 15.0 26.0 0.0 . 359 OR14A16 284532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247978654 247978654 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR14A16 NM_001001966 exon1 c.C378A p.H126Q CAGAGGGTGACAT . 60.0 46.0 88.0 0.0 . 46 OR2T8 343172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248085221 248085221 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR2T8 NM_001005522 exon1 c.G902T p.R301M TGACAAGGTGTAT . 70.0 52.0 86.0 0.0 . 68 OR4Q3 441669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20215690 20215690 + Missense_Mutation SNP A A C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR4Q3 NM_172194 exon1 c.A104C p.Y35S TTTTTTACATTGC . 311.0 63.0 348.0 0.0 . 71 OR4Q3 441669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20216358 20216358 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR4Q3 NM_172194 exon1 c.A772T p.I258F GTATTCATCTATT . 164.0 19.0 189.0 0.0 . 71 OR51M1 390059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 5410935 5410935 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR51M1 NM_001004756 exon1 c.A307T p.S103C TCCCATAGTATCT . 66.0 30.0 104.0 0.0 . 68 OR5L1 219437 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55579638 55579638 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR5L1 NM_001004738 exon1 c.G696T p.E232D TGCAGAGGGCAGG . 85.0 34.0 96.0 1.0 . 73 OR5T2 219464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56000068 56000068 + Silent SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR5T2 NM_001004746 exon1 c.T594C p.H198H CACTGTATGTATA . 133.0 58.0 139.0 0.0 . 70 OR5V1 81696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 29323327 29323327 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR5V1 NM_030876 exon1 c.C646G p.L216V AGGAAAGTACGAT . 34.0 10.0 38.0 0.0 . 72 OR6K2 81448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 158669510 158669510 + Silent SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR6K2 NM_001005279 exon1 c.A933T p.I311I AAAAAATATCTTA . 117.0 42.0 130.0 0.0 . 69 OR6K2 81448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 158669512 158669512 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . OR6K2 NM_001005279 exon1 c.A931T p.I311L AAAATATCTTAGC . 115.0 41.0 130.0 0.0 . 69 PALLD 23022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 169825044 169825044 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PALLD NM_001166108 exon15 c.C2609A p.A870D TTATGGCTGCAAA . 81.0 38.0 88.0 0.0 . 94 PCDHA8 56140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140222105 140222105 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PCDHA8 NM_031856 exon1 c.C1199T p.T400I TGTCCACCTTCAA . 184.0 68.0 192.0 0.0 . 92 PCDHB8 56128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140558291 140558291 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PCDHB8 NM_019120 exon1 c.A676T p.T226S TCTGGCACTGCTC . 301.0 77.0 340.0 0.0 . 131 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 82895887 82895887 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PCF11 NM_015885 exon16 c.C4619T p.A1540V GCATAGCAACACC . 70.0 24.0 65.0 0.0 . 23 PCNT 5116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 47856895 47856895 + Silent SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PCNT NM_006031 exon40 c.A9000T p.T3000T CAGGACAGTTAAT . 25.0 11.0 39.0 0.0 . 141 PDCD11 22984 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 105173039 105173039 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PDCD11 NM_014976 exon9 c.C1145A p.A382D CTGGGGCCACCTT . 118.0 33.0 118.0 1.0 . 275 PDCD1 5133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242793440 242793440 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PDCD1 NM_005018 exon5 c.C637T p.P213S CTGAGGGGTCCTC . 44.0 20.0 46.0 0.0 . 69 PDGFRA 5156 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 55133851 55133851 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PDGFRA NM_006206 exon7 c.C1064T p.T355I ATCTGACTCTGAT . 136.0 58.0 163.0 2.0 . 9497 PDXK 8566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45175644 45175644 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PDXK NM_003681 exon10 c.A825T p.K275N TGCAAAAGGTACG . 14.0 8.0 24.0 0.0 . 205 PGC 5225 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 41712472 41712472 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PGC NM_002630 exon2 c.C134T p.T45I TTGTGGGTCCTCA . 50.0 14.0 58.0 1.0 . 90 PIGO 84720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35094331 35094331 + Missense_Mutation SNP A A C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PIGO NM_001201484 exon4 c.T537G p.D179E GGTATCATCTCCC . 43.0 23.0 42.0 0.0 . 290 PIGQ 9091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 625870 625870 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PIGQ NM_148920 exon3 c.G721A p.G241R TTCCTCGGGAGCA . 18.0 14.0 33.0 0.0 . 226 PLOD3 8985 bcgsc.ca;mdanderson.org 37 7 100855190 100855190 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PLOD3 NM_001084 exon11 c.G1169T p.S390I TCCAGGCTGAAGT . 59.0 43.0 33.0 1.0 . 92 PNLIPRP1 5407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118360697 118360697 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PNLIPRP1 NM_006229 exon10 c.G1047T p.E349D AGGAGAGGCTAGC . 57.0 22.0 55.0 0.0 . 154 PODXL2 50512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 127379537 127379537 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PODXL2 NM_015720 exon3 c.T666A p.H222Q CAGGCATGAAGAC . 85.0 26.0 67.0 0.0 . 91 POF1B 79983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 84561303 84561303 + Silent SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . POF1B NM_024921 exon12 c.T1201C p.L401L CTTCCAATGCCTG . 87.0 67.0 113.0 0.0 . 130 POTEG 404785 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 19553734 19553734 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . POTEG NM_001005356 exon1 c.C318A p.F106L CTGCTTCCCCTGC . 487.0 78.0 531.0 1.0 . 1 PPIL2 23759 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 22025285 22025298 + Frame_Shift_Del DEL GTCTCTCTCTGCAG GTCTCTCTCTGCAG - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 GTCTCTCTCTGCAG GTCTCTCTCTGCAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PPIL2 NM_014337 exon4 c.129_141del p.43_47del TTTTCAGTCTCTC . 140.0 10.0 209.0 0.0 . 92 PRDM2 7799 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 14105627 14105627 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PRDM2 NM_015866 exon8 c.C1337T p.S446L ATGATTCGAGTCC . 93.0 8.0 102.0 1.0 . 116 PRKCE 5581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 45879477 45879477 + Nonsense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PRKCE NM_005400 exon1 c.G238T p.E80X AAGATCGAGCTGG . 30.0 15.0 27.0 0.0 . 1019 PRPF31 26121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54626868 54626868 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PRPF31 NM_015629 exon6 c.T456A p.N152K GAACAATGAGAAC . 81.0 44.0 74.0 0.0 . 91 PRR14L 253143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 32112941 32112941 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PRR14L NM_173566 exon4 c.G884A p.G295E TCCTTCCCATTGT . 181.0 39.0 201.0 0.0 . 91 PRSS57 400668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 687104 687104 + Missense_Mutation SNP G G A rs201377261 TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PRSS57 NM_214710 exon4 c.C466T p.R156W GGCACCGTGTCCC . 59.0 38.0 83.0 0.0 G|0.999;A|0.000 90 PTPRR 5801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 71054875 71054875 + Missense_Mutation SNP T T G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PTPRR NM_002849 exon12 c.A1611C p.Q537H GCTTCCTTGCTGA . 62.0 20.0 84.0 0.0 . 652 PTX4 390667 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 1537527 1537527 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PTX4 NM_001013658 exon2 c.C571A p.P191T CCTCAGGCTGGGT . 55.0 34.0 71.0 0.0 . 90 PYROXD1 79912 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 21609022 21609022 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . PYROXD1 NM_024854 exon7 c.C743A p.T248K AAGGAACAAAAGA . 111.0 39.0 157.0 1.0 . 23 RAB19 401409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 140111745 140111745 + Missense_Mutation SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . RAB19 NM_001008749 exon3 c.C273G p.H91Q TGCCCACGCAGCC . 46.0 21.0 39.0 0.0 . 22 RABL6 55684 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 139722950 139722951 + Frame_Shift_Ins INS - - AG novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_001173989 exon4 c.318_319insAG p.K106fs AGGAAAATGCAAA . 69.0 46.0 27.0 0.0 . . RASSF10 644943 hgsc.bcm.edu;bcgsc.ca 37 11 13031752 13031752 + Frame_Shift_Del DEL G G - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_001080521 exon1 c.629delG p.C210fs CGTCCTGCTCTTC . 90.0 28.0 68.0 0.0 . . RCSD1 92241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167666934 167666934 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . RCSD1 NM_052862 exon6 c.G1073T p.G358V TGAAGGGCGGAGA . 29.0 27.0 37.0 0.0 . 517 RGMB 285704 hgsc.bcm.edu;broad.mit.edu 37 5 98109681 98109682 + Frame_Shift_Ins INS - - C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_001012761 exon3 c.30_31insC p.A10fs AAGCGCGCCCCCC . 28.0 14.0 9.0 0.0 . . RIMBP2 23504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130929724 130929724 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . RIMBP2 NM_015347 exon7 c.T621A p.D207E ATCCTCATCCATG . 33.0 25.0 63.0 0.0 . 142 RIMBP3 85376 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 20458090 20458090 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_015672 exon1 c.C3212A p.T1071N GACATAGTTCCCC . 408.0 94.0 466.0 1.0 . . RIPK3 11035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24807239 24807239 + Silent SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . RIPK3 NM_006871 exon6 c.C672A p.T224T TGGTTCGGTTGGC . 80.0 36.0 77.0 0.0 . 946 RTTN 25914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 67802444 67802444 + Missense_Mutation SNP T T C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . RTTN NM_173630 exon22 c.A2861G p.D954G ACTTCATCAAATA . 193.0 42.0 171.0 0.0 . 141 SEMA3E 9723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 83014738 83014738 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SEMA3E NM_012431 exon16 c.G1747T p.D583Y TCTTATCCAAAGC . 255.0 63.0 213.0 0.0 . 93 SEMA6D 80031 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 48063978 48063978 + Missense_Mutation SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SEMA6D NM_153618 exon19 c.A3218G p.Y1073C ACACATACTAGGC . 86.0 26.0 67.0 1.0 . 138 SENP2 59343 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 185318578 185318578 + Frame_Shift_Del DEL T T - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SENP2 NM_021627 exon5 c.384delT p.S128fs AATAAGTGACTAT . 155.0 56.0 137.0 0.0 . 658 SERINC4 619189 broad.mit.edu;bcgsc.ca 37 15 44087217 44087217 + Frame_Shift_Del DEL T T - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SERINC4 NM_001258031 exon12 c.1538delA p.N513fs TATTTGTTATCTG . 14.0 9.0 22.0 0.0 . 90 SHISA3 152573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 42400220 42400220 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SHISA3 NM_001080505 exon1 c.C147T p.D49D CTTCGACACGCTG . 75.0 21.0 53.0 0.0 . 70 SIN3A 25942 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 75705361 75705361 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SIN3A NM_001145358 exon5 c.C499T p.R167C ACACACGACTAAT . 123.0 41.0 108.0 0.0 . 230 SLC45A3 85414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205628667 205628667 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLC45A3 NM_033102 exon5 c.C1357A p.L453M GGAGCAGGCCACT . 76.0 60.0 73.0 0.0 . 98 SLC4A3 6508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220500505 220500505 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLC4A3 NM_201574 exon14 c.C2164T p.H722Y TACCCGCACTACC . 66.0 31.0 63.0 0.0 . 157 SLC6A13 6540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 335639 335639 + Missense_Mutation SNP A A C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLC6A13 NM_016615 exon9 c.T977G p.F326C GCCACAAAGCTGG . 31.0 11.0 47.0 0.0 . 90 SLC6A3 6531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1422073 1422073 + Missense_Mutation SNP C C T rs6345 bycluster;by1000genomes TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLC6A3 NM_001044 exon5 c.G710A p.R237Q TGCCACCGCGGAG . 42.0 19.0 40.0 0.0 C|0.001;G|0.998 157 SLC6A3 6531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1422086 1422086 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLC6A3 NM_001044 exon5 c.C697A p.L233M GCCCCAGGTCGTC . 40.0 15.0 38.0 0.0 . 157 SLC9A4 389015 hgsc.bcm.edu;broad.mit.edu 37 2 103121886 103121912 + In_Frame_Del DEL TCATCTGCTTCACCCTGGCCTTCTGCC TCATCTGCTTCACCCTGGCCTTCTGCC - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 TCATCTGCTTCACCCTGGCCTTCTGCC TCATCTGCTTCACCCTGGCCTTCTGCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLC9A4 NM_001011552 exon4 c.1154_1180del p.385_394del GGGCCTTCATCTG . 41.0 10.0 47.0 0.0 . 92 SLITRK3 22865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 164908256 164908256 + Silent SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SLITRK3 NM_014926 exon2 c.C363T p.F121F ACCATTGAAAGCT . 80.0 34.0 80.0 0.0 . 100 SPEG 10290 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 220354472 220354472 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SPEG NM_005876 exon36 c.C8732A p.P2911Q CACCACCAGCCCC . 89.0 38.0 117.0 1.0 . 383 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 220326629 220326631 + In_Frame_Del DEL CCC CCC - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 CCC CCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SPEG NM_005876 exon7 c.2466_2468del p.822_823del CAGCAGCCCCATC . 65.0 24.0 60.0 0.0 . 383 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 220348586 220348586 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SPEG NM_005876 exon30 c.G6401T p.G2134V CCCAGGGTGAGGC . 11.0 5.0 13.0 0.0 . 383 SPIRE1 56907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 12454401 12454401 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SPIRE1 NM_001128626 exon13 c.G1720A p.E574K CCAGCTCTGCCTT . 174.0 63.0 183.0 0.0 . 90 SPTAN1 6709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131369944 131369944 + Missense_Mutation SNP G G T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SPTAN1 NM_003127 exon32 c.G4108T p.D1370Y GCCAAGGATGTCA . 56.0 15.0 98.0 0.0 . 158 STAB1 23166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52553354 52553354 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . STAB1 NM_015136 exon49 c.C5109A p.F1703L GCACTTCATTGAC . 74.0 50.0 99.0 0.0 . 139 STAC3 246329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57640644 57640644 + Silent SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . STAC3 NM_145064 exon6 c.C546T p.R182R CCCAGTGCGCAGG . 125.0 40.0 122.0 0.0 . 93 SUPT20HL1 100130302 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 24383090 24383090 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_001136234 exon1 c.C2213A p.A738D GGCAGGCCTTCCC . 124.0 96.0 113.0 0.0 . . SYT17 51760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19234475 19234475 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . SYT17 NM_016524 exon6 c.A1060T p.S354C GATGTGAGCCAAG . 89.0 33.0 91.0 0.0 . 69 TCTE1 202500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 44254246 44254246 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TCTE1 NM_182539 exon3 c.C301G p.L101V CCGGGAGCATCTG . 73.0 17.0 87.0 0.0 . 94 TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 123540198 123540198 + Silent SNP C C T rs148101479 TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_001163278 exon26 c.G5124A p.T1708T AGTTGCCGTCAAG . 76.0 59.0 83.0 0.0 C|1.000;T|0.000 . TFEB 7942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 41658400 41658400 + Splice_Site SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TFEB NM_007162 exon5 c.468+1G>A . CACTCACCTCCCT . 19.0 8.0 27.0 0.0 . 659 TG 7038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133935646 133935646 + Missense_Mutation SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TG NM_003235 exon22 c.C4592G p.A1531G ATCGAGCCAGCCA . 101.0 51.0 65.0 0.0 . 145 TKTL2 84076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 164394657 164394657 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TKTL2 NM_032136 exon1 c.G230A p.G77E GCATGTCCCCTGG . 129.0 47.0 148.0 0.0 . 95 TMC6 11322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76120809 76120809 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TMC6 NM_001127198 exon8 c.G687A p.P229P GCGCCACGGCATC . 89.0 26.0 50.0 0.0 . 90 TNFRSF11B 4982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 119936632 119936632 + Missense_Mutation SNP A A C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TNFRSF11B NM_002546 exon5 c.T1187G p.V396G ATTTTTACTGATT . 151.0 55.0 111.0 0.0 . 651 TNK2 10188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 195610026 195610026 + Splice_Site SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TNK2 NM_005781 exon6 c.609+2T>A . GTACTCACCATCT . 12.0 6.0 23.0 0.0 . 957 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 7577064 7577064 + Nonsense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e TP53,NS,carcinoma,+1 TP53 NM_000546 exon8 c.A874T p.K292X CCCCTTTCTTGCG . 35.0 17.0 60.0 0.0 . 70225 TRIM39 56658 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 30298592 30298593 + Frame_Shift_Del DEL AG AG - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TRIM39 NM_172016 exon4 c.488_489del p.163_163del TGGAACAGAAGCT . 70.0 21.0 72.0 0.0 . 161 TRUB2 26995 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131072114 131072114 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TRUB2 NM_015679 exon8 c.G711A p.K237K AACCAACTTCCGC . 80.0 17.0 108.0 1.0 . 91 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179472259 179472259 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TTN NM_001267550 exon277 c.T53156A p.V17719E TCTATTACAACAC . 165.0 57.0 152.0 0.0 . 636 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179501228 179501228 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TTN NM_001267550 exon225 c.G41226T p.K13742N GTGCAGCTTTCTG . 148.0 54.0 146.0 0.0 . 636 TUBB8 347688 broad.mit.edu;mdanderson.org 37 10 94664 94664 + Silent SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TUBB8 NM_177987 exon3 c.T168A p.G56G CCTGCCACCTGCG . 38.0 8.0 34.0 1.0 . 69 TUBGCP6 85378 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 50656529 50656539 + Frame_Shift_Del DEL TTCTCCGTGAG TTCTCCGTGAG - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 TTCTCCGTGAG TTCTCCGTGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . TUBGCP6 NM_020461 exon24 c.5176_5186del p.1726_1729del GCCGCCTTCTCCG . 34.0 12.0 37.0 0.0 . 93 UBD 10537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 29524084 29524084 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . UBD NM_006398 exon2 c.C71G p.A24G GGGTTGGCATCAA . 69.0 23.0 86.0 0.0 . 90 USH1C 10083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 17544442 17544442 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . USH1C NM_153676 exon12 c.G908T p.R303L GCCAGCCGCTCCC . 69.0 28.0 61.0 0.0 . 91 VAC14 55697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 70778459 70778459 + Silent SNP C C A rs145571853 alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . VAC14 NM_018052 exon13 c.G1395T p.V465V TGCCAGCACCTCC . 64.0 16.0 54.0 0.0 C|1.000;T|0.000 227 VPREB3 29802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 24096504 24096504 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . VPREB3 NM_013378 exon1 c.C47T p.S16L TCACCTGACAGGA . 74.0 24.0 100.0 0.0 . 90 WDR96 80217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 105944803 105944803 + Missense_Mutation SNP A A T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . WDR96 NM_025145 exon16 c.T2112A p.D704E GCCATCATCTCTC . 65.0 12.0 83.0 0.0 . 95 WT1 7490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 32414292 32414292 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . WT1 NM_024424 exon8 c.C1259G p.P420R TGGTATGGTTTCT . 81.0 28.0 90.0 0.0 . 6891 XIRP1 165904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39228092 39228092 + Missense_Mutation SNP G G A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . XIRP1 NM_001198621 exon2 c.C2845T p.P949S CAGCCGGGGGCTC . 53.0 38.0 63.0 0.0 . 158 XIRP2 129446 broad.mit.edu;ucsc.edu;mdanderson.org 37 2 168110643 168110643 + Nonsense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . XIRP2 NM_001199143 exon10 c.C1377A p.C459X GTCCTGCTTCCGA . 311.0 106.0 290.0 1.0 . 104 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 168102891 168102891 + Frame_Shift_Del DEL A A - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . XIRP2 NM_152381 exon9 c.4989delA p.I1663fs AGCAATAAAAAAC . 217.0 95.0 208.0 0.0 . 104 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 168105997 168105997 + Frame_Shift_Del DEL C C - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . XIRP2 NM_152381 exon9 c.8095delC p.P2699fs CACTTGCCCCAAA . 128.0 43.0 137.0 0.0 . 104 XKR4 114786 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 56436755 56436757 + In_Frame_Del DEL AGG AGG - novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 AGG AGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . XKR4 NM_052898 exon3 c.1922_1924del p.641_642del TTATTCAGGAGCG . 41.0 11.0 33.0 0.0 . 92 ZBTB48 3104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 6642352 6642352 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZBTB48 NM_005341 exon3 c.C925T p.H309Y AAAGTCCACAACA . 63.0 27.0 84.0 0.0 . 514 ZCWPW1 55063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 99999574 99999574 + Missense_Mutation SNP G G C novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZCWPW1 NM_017984 exon17 c.C1562G p.A521G GGAGGAGCTGTGG . 268.0 17.0 142.0 0.0 . 90 ZMYM1 79830 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 35563033 35563033 + Silent SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZMYM1 NM_024772 exon4 c.T285A p.I95I AAAAATTCTCCAG . 231.0 92.0 243.0 1.0 . 90 ZMYM2 7750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 20657109 20657109 + Missense_Mutation SNP A A G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZMYM2 NM_001190964 exon24 c.A3757G p.T1253A CCTTTAACGATGG . 229.0 100.0 249.0 0.0 . 685 ZNF107 51427 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 64166839 64166839 + Nonsense_Mutation SNP G G T rs201422104 alternate_allele TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF107 NM_016220 exon7 c.G157T p.E53X GTGGATGAGTGTA . 208.0 67.0 176.0 0.0 . 69 ZNF250 58500 broad.mit.edu;bcgsc.ca 37 8 146108000 146108000 + Missense_Mutation SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . NM_021061 exon6 c.G583A p.G195R TCTCTCCACTAGG . 538.0 40.0 146.0 1.0 . . ZNF577 84765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52376841 52376841 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF577 NM_032679 exon7 c.A402T p.R134S AACACATCTATGG . 60.0 37.0 135.0 0.0 . 91 ZNF577 84765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52376925 52376925 + Missense_Mutation SNP T T A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF577 NM_032679 exon7 c.A318T p.K106N AGAATCTTTTCCT . 49.0 33.0 93.0 0.0 . 91 ZNF667 63934 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56952664 56952664 + Missense_Mutation SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF667 NM_022103 exon5 c.G1700T p.G567V TCTGAGCCACTGC . 128.0 72.0 108.0 1.0 . 91 ZNF670 93474 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247201663 247201663 + Silent SNP C C T novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF670 NM_033213 exon4 c.G258A p.Q86Q TGAATCCTGGCTG . 69.0 61.0 73.0 1.0 . 91 ZNF862 643641 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149558298 149558298 + Silent SNP C C A novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF862 NM_001099220 exon7 c.C2049A p.I683I GGACATCCCCTTC . 74.0 19.0 77.0 1.0 . 69 ZNF98 148198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 22574550 22574550 + Missense_Mutation SNP C C G novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . ZNF98 NM_001098626 exon4 c.G1487C p.G496A GCTTTGCCACATT . 330.0 85.0 257.0 0.0 . 24 MS4A2 2206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 59861471 59861472 + Missense_Mutation DNP TG TG AT novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . . . . p.L191H CCATTCTGGGACT . 91.0 39.0 112.0 0.0 . . IRAK4 51135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 44165082 44165083 + Missense_Mutation DNP GG GG TT novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . . . . p.W74F TTGACTGGGGCAC . 114.0 47.0 143.0 0.0 . . LINGO2 158038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 27949553 27949554 + Missense_Mutation DNP GG GG TT novel TCGA-RC-A6M6-01A-11D-A32G-10 TCGA-RC-A6M6-10A-01D-A32G-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 01e01f50-bbe6-4594-a0ce-609338dc94ef 607d33ab-246a-4caa-94da-4af6591ea60e . . . . . p.L373M ACTGCAGGGTGGG . 33.0 22.0 51.0 0.0 . .