Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48278858	48278858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ABCA13	NM_152701	exon9	c.G918T	p.L306F	TTCCTTGGAGAAG	.	56.0	19.0	60.0	1.0	.	521
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150531864	150531864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ADAMTSL4	NM_019032	exon17	c.C2865G	p.H955Q	TTCTCACCTCCCC	.	97.0	18.0	75.0	0.0	.	92
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759514	8759514	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AICDA	NM_020661	exon2	c.A103T	p.R35W	CACGCCTCTTCAC	.	47.0	14.0	81.0	0.0	.	229
ALK	238	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	30143210	30143210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ALK	NM_004304	exon1	c.C316T	p.P106S	CCCCCGGCGCCGG	.	24.0	5.0	33.0	0.0	.	3833
ALPPL2	251	hgsc.bcm.edu;broad.mit.edu	37	2	233274441	233274441	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ALPPL2	NM_031313	exon11	c.1458delC	p.C486fs	CGCCTGCCTGGAG	.	41.0	15.0	29.0	0.0	.	91
AMPH	273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	38670937	38670937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AMPH	NM_139316	exon1	c.G15T	p.K5N	GCCCGTCTTGATG	.	46.0	17.0	30.0	0.0	.	95
AMZ2	51321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	66246521	66246521	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AMZ2	NM_001033574	exon2	c.G193T	p.E65X	CACCCTGAGGCTC	.	108.0	19.0	115.0	0.0	.	22
APCDD1	147495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10488026	10488026	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	APCDD1	NM_153000	exon5	c.C1536A	p.I512I	GAACATCCGCAGA	.	33.0	14.0	34.0	1.0	.	90
APCS	325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159558103	159558103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	APCS	NM_001639	exon2	c.T277C	p.Y93H	AGTCTATACATTG	.	73.0	18.0	52.0	0.0	.	154
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145780976	145780976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ARHGAP39	NM_025251	exon5	c.T564A	p.D188E	ACTGTAATCCCGG	.	129.0	25.0	101.0	0.0	.	90
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149677632	149677632	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ARSI	NM_001012301	exon2	c.T855C	p.G285G	GTAGAAACCGTAG	.	64.0	27.0	80.0	0.0	.	92
ASPSCR1	79058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79974909	79974909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ASPSCR1	NM_001251888	exon16	c.T1850A	p.V617D	CGCTGGTCCCCCC	.	33.0	14.0	54.0	0.0	.	877
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42583637	42583637	+	Splice_Site	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ATP8A1	NM_001105529	exon11	c.834+1G>T	.	ATTTCACCTGCAT	.	65.0	30.0	70.0	0.0	.	92
BBS12	166379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123664403	123664404	+	Frame_Shift_Ins	INS	-	-	CAGG	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BBS12	NM_001178007	exon3	c.1356_1357insCAGG	p.V452fs	AGCAGTACAGGTG	.	84.0	25.0	119.0	0.0	.	92
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51693401	51693401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BIN2	NM_016293	exon6	c.A506T	p.K169M	GCAGTCTTGGCCT	.	40.0	13.0	58.0	0.0	.	91
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34192707	34192707	+	Missense_Mutation	SNP	C	C	T	rs143727756		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BMPER	NM_133468	exon16	c.C1880T	p.T627I	CAGCCACCCAGTG	.	97.0	37.0	84.0	0.0	C|1.000;T|0.000	92
CA10	56934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	50235089	50235089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CA10	NM_001082534	exon2	c.T58C	p.S20P	TACCTGATATGCA	.	78.0	32.0	109.0	0.0	.	516
CAMK2B	816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	44281927	44281927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CAMK2B	NM_172081	exon10	c.G709T	p.E237X	CCCACTCAGGGGA	.	68.0	28.0	75.0	0.0	.	334
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103383301	103383301	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001146197	exon4	c.G19746C	p.K6582N	GGGTTTCTTTCTC	.	136.0	48.0	167.0	0.0	.	.
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40027408	40027408	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CDK13	NM_003718	exon2	c.A1422C	p.A474A	AGCTGCAGAAGCA	.	99.0	40.0	105.0	0.0	.	548
CDRT1	374286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15508540	15508541	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CDRT1	NM_006382	exon7	c.1429_1430del	p.477_477del	CACCTGATACTTA	.	348.0	0.0	380.0	0.0	.	68
CLEC3B	7123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45077186	45077186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CLEC3B	NM_003278	exon3	c.A379T	p.N127Y	GTGGGCAACGAGG	.	46.0	19.0	52.0	0.0	.	90
CNTFR	1271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	34552230	34552230	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CNTFR	NM_147164	exon9	c.C1047A	p.P349P	CAAGAAGGGTGCC	.	23.0	10.0	32.0	0.0	.	518
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103428289	103428289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	COL11A1	NM_080629	exon39	c.G2980A	p.G994R	GTTCCCCTATTGG	.	186.0	57.0	195.0	0.0	.	586
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29160618	29160618	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CPVL	NM_019029	exon2	c.T60C	p.C20C	CCCATCACAGGGG	.	105.0	34.0	144.0	0.0	.	92
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu	37	17	43911988	43911988	+	Splice_Site	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CRHR1	NM_001256299	exon15	c.583-2A>T	.	GCCCACAGGTCCG	.	23.0	4.0	22.0	0.0	.	522
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166533005	166533005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CSRNP3	NM_001172173	exon6	c.G592A	p.E198K	GTGGAAGAAAAGC	.	87.0	29.0	91.0	0.0	.	157
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	179.0	61.0	183.0	1.0	.	24361
DCAF4L1	285429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	41984018	41984018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCAF4L1	NM_001029955	exon1	c.C209T	p.A70V	CTTTGGCGAGCGA	.	149.0	64.0	181.0	1.0	.	23
DCHS2	54798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155264728	155264728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCHS2	NM_017639	exon7	c.A871G	p.K291E	TTCCCTTAAACCT	.	34.0	12.0	29.0	1.0	.	94
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155157921	155157921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCHS2	NM_017639	exon25	c.G6518A	p.S2173N	CTAGCACTTGCTT	.	69.0	29.0	68.0	0.0	.	94
DDC	1644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50595913	50595913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DDC	NM_001082971	exon6	c.T636A	p.D212E	GTTGCCATCTGAG	.	81.0	28.0	79.0	0.0	.	92
DMP1	1758	broad.mit.edu;bcgsc.ca	37	4	88584445	88584445	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DMP1	NM_004407	exon6	c.T1515C	p.D505D	CCAAGATGACAAT	.	62.0	5.0	81.0	0.0	.	132
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172017769	172017769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DNM3	NM_001136127	exon10	c.C1214A	p.P405Q	TTACTCCAGACAT	.	229.0	100.0	190.0	0.0	.	90
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154593130	154593130	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DPP6	NM_130797	exon13	c.A1365T	p.G455G	CCAGGGAGGACGA	.	70.0	15.0	55.0	0.0	.	652
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96232185	96232185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ERAP2	NM_001130140	exon8	c.T1348C	p.F450L	GAAATGTTTGATG	.	200.0	63.0	233.0	0.0	.	68
EXTL3	2137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28575255	28575255	+	Missense_Mutation	SNP	C	C	T	rs200494893		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	EXTL3	NM_001440	exon3	c.C1679T	p.A560V	GCAAGGCGGCTGG	.	35.0	16.0	78.0	0.0	C|0.999;T|0.001	92
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45521641	45521641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FAM179B	NM_015091	exon14	c.A4157G	p.Y1386C	ACAGGTATTATGG	.	53.0	17.0	75.0	0.0	.	93
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18874756	18874756	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FAM83G	NM_001039999	exon6	c.A2388G	p.L796L	GGCCTTTAGGTGC	.	57.0	12.0	60.0	0.0	.	69
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10102063	10102063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FANCD2	NM_001018115	exon19	c.T1742C	p.M581T	TGACCATGGCTGG	.	64.0	26.0	61.0	0.0	.	229
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8167618	8167618	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FBN3	NM_032447	exon39	c.T5079C	p.T1693T	GATGGGAGTGGGG	.	56.0	21.0	63.0	1.0	.	100
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155507134	155507134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FGA	NM_000508	exon5	c.G1447A	p.V483M	AGGTCACCACTTC	.	100.0	33.0	140.0	0.0	.	93
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79391155	79391155	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FRAS1	NM_025074	exon51	c.G7281A	p.P2427P	TCAGCCGTTCCGA	.	67.0	22.0	82.0	0.0	.	68
FSIP2	401024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186670429	186670429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FSIP2	NM_173651	exon17	c.A16663G	p.R5555G	ATAAATAGAGGTA	.	76.0	25.0	87.0	1.0	.	90
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161118965	161118965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GABRA6	NM_000811	exon8	c.C845A	p.T282N	TTTTAACTATGAC	.	71.0	25.0	63.0	0.0	.	163
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88411981	88411981	+	Missense_Mutation	SNP	G	G	A	rs200960659		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GALC	NM_000153	exon14	c.C1586T	p.T529M	CGTAGCGTGAAGT	.	139.0	46.0	139.0	0.0	.	90
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128064751	128064751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GAPVD1	NM_015635	exon3	c.G675T	p.R225S	TGAGAGGTTCTCT	.	54.0	25.0	55.0	0.0	.	93
GIMAP1-GIMAP5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150440117	150440117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001199577	exon6	c.T1502C	p.F501S	TTTTTTTCATTAT	.	51.0	12.0	80.0	0.0	.	.
GLB1L	79411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220102300	220102300	+	Nonsense_Mutation	SNP	G	G	T	rs183755555	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GLB1L	NM_024506	exon16	c.C1623A	p.Y541X	TTTGGAGTAGAAT	.	119.0	35.0	113.0	0.0	G|0.999;A|0.001	90
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220370193	220370193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GMPPA	NM_205847	exon9	c.G769A	p.A257T	CTCTACGCCTCCC	.	72.0	17.0	82.0	0.0	.	90
GMPS	8833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155640077	155640077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GMPS	NM_003875	exon11	c.G1420T	p.A474S	TTTTCTGCAAGTG	.	420.0	139.0	492.0	2.0	.	229
GOLGA8A	23015	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34673744	34673744	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_181077	exon16	c.G1680A	p.Q560Q	GTTGTCCTGGGAA	.	270.0	37.0	303.0	0.0	.	.
GOLGA8B	440270	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34819965	34819965	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001023567	exon16	c.G1680A	p.Q560Q	GTTGTCCTGGGAA	.	202.0	26.0	202.0	0.0	.	.
GRIN1	2902	broad.mit.edu;mdanderson.org	37	9	140056377	140056377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GRIN1	NM_001185091	exon12	c.T1532C	p.V511A	CGCAGGTGAACAA	.	21.0	4.0	37.0	0.0	.	187
HAPLN4	404037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19369444	19369444	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HAPLN4	NM_023002	exon4	c.G705A	p.G235G	CCCGGTCCCCCCC	.	48.0	21.0	42.0	0.0	.	91
HAUS6	54801	broad.mit.edu;mdanderson.org	37	9	19058467	19058467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HAUS6	NM_017645	exon16	c.G2298T	p.K766N	AAAACTCTTAGAA	.	167.0	43.0	184.0	1.0	.	92
HEPH	9843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65408258	65408258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HEPH	NM_138737	exon5	c.T845C	p.L282P	TCTTCCTCCTCTT	.	100.0	68.0	128.0	1.0	.	135
HERC2P3	283755	broad.mit.edu;bcgsc.ca	37	15	20644207	20644207	+	RNA	SNP	G	G	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HERC2P3	.	.	.	.	AAAGCTGTGGGTG	.	184.0	53.0	233.0	0.0	.	92
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	75368213	75368213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HIP1	NM_005338	exon1	c.A26C	p.K9T	ACCTGCTTCATGG	.	31.0	13.0	45.0	0.0	.	1085
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177637219	177637219	+	Missense_Mutation	SNP	G	G	T	rs115721462	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HNRNPAB	NM_031266	exon7	c.G874T	p.G292C	TATGGCGGCTACG	.	52.0	18.0	78.0	0.0	G|0.999;A|0.001	22
HTRA1	5654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124273831	124273831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HTRA1	NM_002775	exon9	c.G1399A	p.E467K	GGTAATGAAGATA	.	110.0	28.0	114.0	0.0	.	90
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	155233487	155233487	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	IL9R	NM_176786	exon5	c.C534T	p.A178A	GTCAGCCTGGTGG	.	121.0	38.0	113.0	0.0	.	40
ITGB6	3694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	161029224	161029224	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ITGB6	NM_000888	exon6	c.G777T	p.R259R	GTCATTCCGCCAG	.	55.0	19.0	61.0	0.0	.	227
KCNA1	3736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	5020766	5020766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNA1	NM_000217	exon2	c.222delC	p.D74fs	CTTCGACCCCCTG	.	65.0	22.0	63.0	0.0	.	228
KCNIP1	30820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170160865	170160865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNIP1	NM_001034837	exon8	c.T599C	p.I200T	ATGGCATCGTAAC	.	45.0	11.0	46.0	0.0	.	92
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2718181	2718181	+	Missense_Mutation	SNP	G	G	A	rs140256288		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNV2	NM_133497	exon1	c.G442A	p.E148K	ACAGACGAATACT	.	113.0	38.0	163.0	0.0	G|1.000;A|0.000	515
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123128393	123128393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1109	NM_015312	exon14	c.G1627A	p.D543N	TGGATCGACTGTT	.	165.0	40.0	207.0	0.0	.	80
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81235392	81235392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1199	NM_018689	exon27	c.T3806G	p.L1269R	CCATTCTGCAAGG	.	99.0	34.0	107.0	0.0	.	93
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18375495	18375495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1683	NM_001145304	exon3	c.G2855T	p.R952L	AGGGCTCGGGACA	.	58.0	16.0	49.0	0.0	.	92
KIR2DL3	3804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55263136	55263136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIR2DL3	NM_015868	exon6	c.T751A	p.S251T	GGGACCTCAGTGG	.	14.0	7.0	22.0	0.0	.	92
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	86877345	86877345	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KLHL4	NM_019117	exon5	c.G1059T	p.V353V	GTGGGTGGGGCAT	.	122.0	83.0	173.0	1.0	.	133
LCE5A	254910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152484038	152484038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LCE5A	NM_178438	exon2	c.T28C	p.C10R	CAGCAGTGCCAGC	.	106.0	35.0	90.0	0.0	.	91
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	57021788	57021788	+	Missense_Mutation	SNP	T	T	A	rs139797136	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LMAN1	NM_005570	exon4	c.A502T	p.I168L	TGCCTATAATTAC	.	77.0	24.0	76.0	0.0	T|1.000;C|0.000	91
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170072882	170072882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRP2	NM_004525	exon35	c.G5707A	p.A1903T	TGTTAGCACTGGC	.	144.0	44.0	140.0	0.0	.	175
LRRC31	79782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169565966	169565966	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRRC31	NM_024727	exon8	c.G1269A	p.S423S	TTGAAGAGACATG	.	48.0	24.0	65.0	0.0	.	93
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450884	85450884	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRRIQ1	NM_001079910	exon8	c.G2313A	p.V771V	ACCTGTGAAATGC	.	155.0	61.0	193.0	0.0	.	95
MAB21L1	4081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049446	36049446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MAB21L1	NM_005584	exon1	c.T830C	p.L277P	GAAACCAGAGTCT	.	142.0	40.0	169.0	1.0	.	92
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149227546	149227546	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MBD5	NM_018328	exon9	c.T2034C	p.S678S	TAGTTCTGCAGTT	.	58.0	13.0	61.0	0.0	.	95
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85403450	85403450	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MCOLN2	NM_153259	exon11	c.A1323C	p.P441P	ATGGTATGGTCCT	.	77.0	26.0	82.0	0.0	.	94
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168838896	168838896	+	Silent	SNP	C	C	A	rs185054275	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MECOM	NM_004991	exon7	c.G1080T	p.S360S	GCCCGACGAAGTG	.	68.0	30.0	81.0	0.0	C|0.999;T|0.001	853
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151860694	151860694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLL3	NM_170606	exon43	c.A9968C	p.H3323P	CTAGTATGGCCAG	.	158.0	56.0	187.0	0.0	.	1398
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6226990	6226990	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLLT1	NM_005934	exon5	c.A544T	p.K182X	TAACCTTGGAGCC	.	110.0	28.0	132.0	0.0	.	658
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2256124	2256124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLST8	NM_001199174	exon2	c.T38C	p.V13A	ACCCGGTCATCCT	.	38.0	15.0	57.0	0.0	.	392
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113231596	113231596	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MOV10	NM_020963	exon3	c.T177C	p.Y59Y	GCTGTATGGAATG	.	104.0	32.0	105.0	0.0	.	95
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142505463	142505463	+	RNA	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	TAGTCGTGGATGG	.	180.0	115.0	135.0	0.0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085379	9085379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC16	NM_024690	exon1	c.C6436T	p.L2146F	TTGGAAGAGGGAC	.	83.0	29.0	93.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9072822	9072822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC16	NM_024690	exon3	c.C14624A	p.S4875X	GGTATTGATCTGG	.	267.0	93.0	295.0	0.0	.	566
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC2	NM_002457	exon30	c.C5117T	p.T1706M	CCACTACGGTGAC	.	64.0	8.0	69.0	0.0	.	90
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408576	10408576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MYH1	NM_005963	exon21	c.T2339C	p.M780T	TCTCGCATCTCCT	.	122.0	39.0	116.0	0.0	.	171
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101735199	101735199	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NALCN	NM_052867	exon33	c.A3726C	p.A1242A	CATTGTTGCCAAA	.	73.0	32.0	66.0	0.0	.	167
NAP1L2	4674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	72434298	72434298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NAP1L2	NM_021963	exon1	c.T31C	p.S11P	ATTCTGACAGCTC	.	119.0	86.0	135.0	0.0	.	130
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	5462324	5462325	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP1	NM_014922	exon4	c.1692_1693insT	p.L564fs	GGGTCCCAATGGC	.	107.0	37.0	137.0	0.0	.	274
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54301639	54301639	+	Missense_Mutation	SNP	C	C	T	rs146368839		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP12	NM_144687	exon8	c.G2785A	p.G929S	CACAGGCGGCAGA	.	119.0	48.0	82.0	0.0	C|0.998;T|0.002	211
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56485050	56485050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP8	NM_176811	exon7	c.G2567T	p.C856F	TTACTTGTGAAAG	.	112.0	27.0	76.0	1.0	.	361
NOC4L	79050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132636050	132636050	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NOC4L	NM_024078	exon12	c.G1095A	p.V365V	CCTGGTGGCCGCC	.	23.0	11.0	26.0	0.0	.	90
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15280956	15280956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NOTCH3	NM_000435	exon28	c.A5140T	p.M1714L	CCCCCATCAGGCT	.	72.0	29.0	95.0	0.0	.	855
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37351407	37351407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NUP155	NM_153485	exon6	c.A608G	p.D203G	AAAGGATCTGGAA	.	123.0	39.0	170.0	0.0	.	205
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228481978	228481978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OBSCN	NM_001271223	exon47	c.A12544G	p.R4182G	ACCCTCAGAGATG	.	127.0	36.0	145.0	0.0	.	403
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220422736	220422736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OBSL1	NM_001173431	exon11	c.C3599T	p.A1200V	GCGCCAGCCCGGG	.	46.0	12.0	47.0	0.0	.	71
OR52B4	143496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4388835	4388835	+	Missense_Mutation	SNP	G	G	A	rs200224336		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OR52B4	NM_001005161	exon1	c.C691T	p.P231S	GAGAAGGCATGTG	.	73.0	31.0	91.0	0.0	G|0.999;A|0.001	90
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568990	55568990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PCDH15	.	.	.	.	TATTCAGTATAGT	.	123.0	39.0	133.0	0.0	.	193
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu	37	5	140730776	140730776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PCDHGB1	NM_018922	exon1	c.G949T	p.A317S	GTGGAAGCTAAGG	.	84.0	4.0	106.0	0.0	.	33
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170114882	170114882	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PHF10	NM_018288	exon7	c.C750A	p.V250V	AGAACTGACCTTT	.	76.0	38.0	126.0	0.0	.	226
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46655628	46655628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PKDREJ	NM_006071	exon1	c.G3592A	p.V1198M	GGCCCACGTATAA	.	71.0	16.0	60.0	2.0	.	156
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159526346	159526346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PKP4	NM_001005476	exon17	c.A2843G	p.K948R	CCAGCAAAAACAT	.	139.0	44.0	157.0	0.0	.	97
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14511960	14511960	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	POTEC	NM_001137671	exon11	c.C1566T	p.L522L	ACGCAAGAGATCT	.	608.0	183.0	756.0	0.0	.	3
PPDPF	79144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62153144	62153144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PPDPF	NM_024299	exon4	c.G257A	p.S86N	CCAGCAGCATGAC	.	52.0	21.0	51.0	0.0	.	90
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228004984	228004984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PRSS38	NM_183062	exon3	c.G386T	p.W129L	CCCAGTGGTATGA	.	84.0	40.0	71.0	0.0	.	92
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29609329	29609329	+	Silent	SNP	G	G	C	rs142462225	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PTPRU	NM_133177	exon12	c.G2010C	p.A670A	ACTGGCGGCCAGC	.	60.0	21.0	63.0	0.0	G|1.000;A|0.000	291
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51390766	51390766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PYGL	NM_002863	exon5	c.G581T	p.R194L	TCTGGGCGGGACT	.	110.0	34.0	140.0	0.0	.	91
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33872221	33872221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	RYR3	NM_001243996	exon13	c.A1313G	p.E438G	TAGAAGAAGTCCT	.	134.0	41.0	167.0	0.0	.	520
SAAL1	113174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18105155	18105155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SAAL1	NM_138421	exon10	c.1166delA	p.D389fs	AAATCATCTTGGG	.	201.0	66.0	196.0	0.0	.	90
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9868632	9868632	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SBF2	NM_030962	exon24	c.2807-2A>G	.	ACCCACTGTAAAT	.	159.0	52.0	195.0	0.0	.	93
SCNM1	79005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151139457	151139457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SCNM1	NM_024041	exon3	c.C170T	p.A57V	CCCTGGCCATGCT	.	80.0	20.0	67.0	0.0	.	94
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	1	145109584	145109584	+	RNA	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	TAAGACGTTGGCT	.	486.0	38.0	357.0	0.0	.	.
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81965951	81965953	+	Frame_Shift_Del	DEL	ACC	ACC	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SEL1L	NM_001244984	exon7	c.831_831del	p.277_277del	AGTATTACCTTTG	.	151.0	30.0	213.0	0.0	.	227
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51113571	51113571	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SHANK3	NM_033517	exon2	c.T159C	p.Y53Y	CAACTATGGGCTT	.	32.0	24.0	29.0	0.0	.	69
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51633221	51633221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SIGLEC9	NM_014441	exon7	c.T1277C	p.V426A	CCTCAGTGGGGGA	.	137.0	29.0	76.0	0.0	.	91
SLCO1B1	10599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21325651	21325651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SLCO1B1	NM_006446	exon3	c.C152A	p.S51Y	AAAGTTCCATCAT	.	118.0	48.0	136.0	1.0	.	97
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57898307	57898307	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SLMAP	NM_007159	exon17	c.T1797A	p.L599L	TGAGCTTGAGCGG	.	40.0	18.0	53.0	0.0	.	90
SNTG1	54212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	51617237	51617237	+	Silent	SNP	G	G	A	rs189241890		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SNTG1	NM_018967	exon16	c.G1116A	p.V372V	CTCAGTGGAGCTG	.	76.0	14.0	48.0	0.0	G|0.999;A|0.000	95
SPRY3	10251	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	155003829	155003829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SPRY3	NM_005840	exon2	c.T296C	p.L99P	AAAGGCTCTTGGC	.	167.0	65.0	164.0	1.0	.	136
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48125757	48125757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SSX1	NM_005635	exon7	c.C502A	p.L168M	CACAGACTGCGTG	.	216.0	170.0	238.0	0.0	.	522
STK33	65975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8457664	8457664	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STK33	NM_030906	exon11	c.T970C	p.L324L	TTGCCAAAAAGGG	.	88.0	32.0	123.0	0.0	.	337
STK40	83931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36809505	36809505	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STK40	NM_032017	exon10	c.C960T	p.A320A	GGCGGCGGCCAGG	.	86.0	33.0	95.0	0.0	.	83
STPG2	285555	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	98893569	98893569	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_174952	exon7	c.G795A	p.L265L	ATTGTTCAAGACA	.	300.0	97.0	295.0	1.0	.	.
STPG2	285555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	98902423	98902423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_174952	exon6	c.A659T	p.N220I	GGTTCATTATATG	.	83.0	28.0	125.0	0.0	.	.
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	70551048	70551048	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SULF1	NM_001128205	exon21	c.C2506T	p.Q836X	AGCTGTCAAGGAT	.	333.0	72.0	205.0	0.0	.	518
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73944310	73944310	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TERF1	NM_017489	exon8	c.A981G	p.Q327Q	GTTGCAACATGGA	.	180.0	106.0	116.0	0.0	.	228
TET1	80312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	70333914	70333914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TET1	NM_030625	exon2	c.A1819G	p.T607A	GAATGCACTTACT	.	37.0	14.0	44.0	0.0	.	663
TICRR	90381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90159653	90159653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_152259	exon16	c.A2887T	p.T963S	CTGCTGACTAAGA	.	56.0	20.0	94.0	0.0	.	.
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126068404	126068404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TMEM132B	NM_052907	exon5	c.A1286T	p.E429V	ACACCGAGGTTTT	.	45.0	15.0	43.0	0.0	.	185
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42519078	42519078	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TMEM87A	NM_015497	exon15	c.C1329T	p.A443A	CCAGATGGCATCG	.	45.0	14.0	54.0	0.0	.	91
TNK2	10188	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195609177	195609177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TNK2	NM_001010938	exon6	c.G821T	p.G274V	AACGATCCCAGAG	.	127.0	36.0	131.0	1.0	.	957
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10942966	10942966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TPTE	NM_199261	exon12	c.T621A	p.H207Q	AAACAGATGAAAA	.	572.0	99.0	695.0	0.0	.	344
TRPC6	7225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	101375213	101375213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TRPC6	NM_004621	exon2	c.487delG	p.D163fs	AAGCATCCCCAAC	.	71.0	21.0	70.0	0.0	.	93
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77442785	77442785	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TRPM6	NM_017662	exon7	c.G750A	p.L250L	ATCAGACAGGATG	.	85.0	28.0	111.0	0.0	.	335
TSPAN31	6302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58140038	58140038	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TSPAN31	NM_005981	exon3	c.A311C	p.Q104P	GCAAACAGGTAAG	.	118.0	40.0	134.0	0.0	.	446
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179432581	179432581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_001267550	exon326	c.G78278A	p.G26093E	GGGGTTCCTGGTG	.	112.0	40.0	120.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179554080	179554080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_001267550	exon124	c.A31948C	p.K10650Q	GAACTTTCTTCTT	.	106.0	35.0	106.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179614607	179614607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_133379	exon46	c.G12520T	p.D4174Y	TGGAATCCCCTTC	.	151.0	59.0	154.0	0.0	.	636
TUBGCP3	10426	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	113210371	113210371	+	Missense_Mutation	SNP	G	G	A	rs186110739		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TUBGCP3	NM_006322	exon6	c.C716T	p.T239M	CCACCCGTATCCC	.	74.0	24.0	88.0	1.0	G|0.999;A|0.000	90
UHRF1BP1L	23074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	100452950	100452950	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	UHRF1BP1L	NM_015054	exon14	c.G2105A	p.W702X	TCTATCCAAAATT	.	135.0	46.0	135.0	0.0	.	24
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12375836	12375836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	VWDE	NM_001135924	exon27	c.G4585T	p.G1529C	CACCACCGTTTTT	.	158.0	45.0	144.0	0.0	.	68
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168115372	168115372	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	XIRP2	NM_001199143	exon11	c.G2415A	p.S805S	TTATTCGAGGAAT	.	143.0	47.0	138.0	0.0	.	104
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	56179629	56179629	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZBP1	NM_030776	exon8	c.G1290A	p.X430X	TGTGCACTAAATC	.	50.0	12.0	50.0	0.0	.	228
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40735691	40735691	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZMPSTE24	NM_005857	exon5	c.G519T	p.V173V	TGTTGTGACTCAG	.	208.0	60.0	208.0	0.0	.	226
ZNF417	147687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58419943	58419943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF417	NM_152475	exon3	c.G1703A	p.S568N	TGTGAACTCTGAT	.	346.0	66.0	185.0	0.0	.	90
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44762400	44762400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF502	NM_001134440	exon4	c.G91A	p.D31N	GAGCAGGATGTCT	.	100.0	36.0	107.0	0.0	.	90
ZNF737	100129842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20736517	20736517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF737	NM_001159293	exon2	c.T128C	p.L43P	TCACCAAGGAAGA	.	399.0	162.0	442.0	0.0	.	1
ZNF813	126017	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53995183	53995183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF813	NM_001004301	exon4	c.T1697A	p.L566H	CACACCTTGCACG	.	168.0	34.0	128.0	1.0	.	67
ZNF841	284371	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52570807	52570807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001136499	exon7	c.G328A	p.G110R	TTTCTCCTGTGTT	.	292.0	38.0	188.0	1.0	.	.
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53854549	53854549	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_138374	exon4	c.A621T	p.E207D	GCAGGAAGTACAC	.	194.0	35.0	172.0	0.0	.	.
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	53856524	53856524	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_138374	exon4	c.A2596T	p.K866X	TGTGGCAAGGTTT	.	173.0	37.0	86.0	0.0	.	.
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	57936473	57936473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZXDA	NM_007156	exon1	c.A382C	p.S128R	CGCCGCTCTCGTC	.	9.0	8.0	8.0	0.0	.	131
KRTAP1-5	83895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39183121	39183122	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	p.G96F	CCAATGCCACAGC	.	56.0	21.0	52.0	0.0	.	.