Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ACR 49 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 51183204 51183204 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ACR NM_001097 exon5 c.T835C p.W279R GCCACCTGGCCCT . 171.0 64.0 176.0 0.0 . 90 ADAM12 8038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127753560 127753560 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ADAM12 NM_021641 exon14 c.C1433T p.A478V GTTCCTGCAGGCT . 31.0 16.0 33.0 0.0 . 716 ALX1 8092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 85677457 85677457 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ALX1 NM_006982 exon2 c.G334A p.E112K ATGCAAGAGAAGG . 120.0 41.0 120.0 0.0 . 24 AMPD3 272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10527413 10527413 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . AMPD3 NM_000480 exon15 c.C2313T p.I771I AGAGATCACCGCC . 36.0 15.0 45.0 0.0 . 291 ANPEP 290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90335706 90335706 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ANPEP NM_001150 exon17 c.G2337A p.W779X CTCCATCCACTGC . 95.0 33.0 126.0 0.0 . 94 ANPEP 290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 90335708 90335708 + Missense_Mutation SNP A A C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ANPEP NM_001150 exon17 c.T2335G p.W779G CCATCCACTGCTT . 94.0 34.0 128.0 0.0 . 94 ANXA1 301 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 75782426 75782426 + Silent SNP A A T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ANXA1 NM_000700 exon11 c.A816T p.T272T CGCCACAAGCAAA . 123.0 9.0 150.0 0.0 . 650 ARFRP1 10139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62338416 62338416 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ARFRP1 NM_001134758 exon2 c.A28G p.K10E TGTACTTGTACAA . 49.0 20.0 60.0 0.0 . 291 ARID2 196528 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 46123902 46123902 + Frame_Shift_Del DEL T T - novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ARID2 NM_152641 exon2 c.168delT p.T56fs CACTACTTTAGGC . 110.0 46.0 117.0 0.0 . 100 ARID2 196528 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 46246499 46246499 + Frame_Shift_Del DEL A A - novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ARID2 NM_152641 exon15 c.4593delA p.P1531fs AATTCCAAATAAA . 88.0 26.0 75.0 0.0 . 100 ATP5L 10632 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118277703 118277703 + Missense_Mutation SNP A A C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ATP5L NM_006476 exon2 c.A104C p.K35T ACGCCAAGGTTGA . 20.0 5.0 43.0 0.0 . 90 ATRN 8455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3541522 3541522 + Missense_Mutation SNP T T G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ATRN NM_139321 exon8 c.T1417G p.Y473D TATGGATATATAA . 132.0 51.0 189.0 0.0 . 154 BCL9L 283149 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 118769207 118769207 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . BCL9L NM_182557 exon8 c.C4417A p.P1473T GAAGGGGGTGGGA . 62.0 28.0 83.0 0.0 . 229 BDKRB2 624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 96707560 96707560 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . BDKRB2 NM_000623 exon3 c.G895A p.G299S CGCCTCGGCATCC . 52.0 20.0 43.0 0.0 . 662 C2orf71 388939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 29295459 29295459 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . C2orf71 NM_001029883 exon1 c.G1669T p.V557L AGGGCACAGGGAC . 48.0 16.0 70.0 0.0 . 91 C6orf226 441150 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 42858426 42858426 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_001008739 exon1 c.T101C p.L34P CCCGGGAGTTCCT . 44.0 16.0 53.0 1.0 . . CARS2 79587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 111335421 111335421 + Missense_Mutation SNP A A C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CARS2 NM_024537 exon6 c.T632G p.V211G CCAGGGACCACGC . 40.0 19.0 44.0 0.0 . 90 CBFA2T2 9139 hgsc.bcm.edu;broad.mit.edu 37 20 32199083 32199084 + In_Frame_Ins INS - - CAATGACAT novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CBFA2T2 NM_005093 exon4 c.389_390insCAATGACAT p.G130delinsGNDI AGTTTGGCAATGA . 74.0 10.0 105.0 0.0 . 92 CC2D1B 200014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 52830265 52830265 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CC2D1B NM_032449 exon2 c.G28T p.G10C GAGGGCCCTTCCG . 22.0 8.0 44.0 0.0 . 92 CCDC88C 440193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 91779756 91779756 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CCDC88C NM_001080414 exon15 c.G2404C p.D802H CCAGGTCCCGCCG . 26.0 10.0 23.0 0.0 . 25 CCSER1 401145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 91389492 91389492 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_001145065 exon5 c.G1711A p.E571K TTTCCTGAGCCTT . 145.0 42.0 171.0 0.0 . . CD164L2 388611 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 27709145 27709145 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CD164L2 NM_207397 exon2 c.G101A p.R34Q AAGCCTCGAGCTC . 60.0 26.0 76.0 0.0 . 90 CD22 933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35832797 35832797 + Missense_Mutation SNP G G C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CD22 NM_001185100 exon9 c.G1964C p.G655A ACTCGGGTGCCTA . 66.0 25.0 84.0 0.0 . 526 CELSR2 1952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 109812678 109812678 + Missense_Mutation SNP A A G rs78104849 TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CELSR2 NM_001408 exon23 c.A7231G p.I2411V CACGGCATCCGAC . 99.0 37.0 123.0 0.0 A|0.999;G|0.000 526 CHD1L 9557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 146747921 146747921 + Silent SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CHD1L NM_004284 exon14 c.G1539A p.Q513Q CCTCCAGGTATGA . 66.0 22.0 73.0 0.0 . 231 CHD4 1108 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 6703766 6703778 + Frame_Shift_Del DEL TCCACCTGTAGCA TCCACCTGTAGCA - novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 TCCACCTGTAGCA TCCACCTGTAGCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CHD4 NM_001273 exon15 c.2160_2172del p.720_724del CAGGGTTCCACCT . 107.0 33.0 96.0 0.0 . 228 CHRNA3 1136 hgsc.bcm.edu;broad.mit.edu 37 15 78894345 78894345 + Silent SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CHRNA3 NM_000743 exon5 c.A639T p.P213P GTAGCCTGGGGCT . 94.0 4.0 111.0 0.0 . 515 COL13A1 1305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 71688713 71688713 + Silent SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . COL13A1 NM_001130103 exon27 c.G1410T p.G470G TCCTGGGCAAATT . 62.0 11.0 122.0 0.0 . 91 COPZ1 22818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54736037 54736037 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . COPZ1 NM_001271736 exon3 c.G159T p.E53D CTTTGAGAAGAAC . 89.0 31.0 113.0 0.0 . 90 CPT1B 1375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 51014481 51014481 + Missense_Mutation SNP T T C rs148070553 TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CPT1B NM_001145135 exon7 c.A760G p.S254G AGTTGCTGTTCAC . 44.0 18.0 56.0 0.0 T|1.000;C|0.000 116 CSMD3 114788 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113304861 113304861 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CSMD3 NM_198123 exon55 c.C8693A p.T2898K GAGAATGTTACCA . 223.0 24.0 97.0 1.0 . 1132 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41268766 41268766 + Missense_Mutation SNP A A T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 CTNNB1,NS,Wilms_tumour,0 CTNNB1 NM_001098209 exon7 c.A1004T p.K335I ACGAAAAACTACT . 68.0 27.0 61.0 0.0 . 24361 CYP11B2 1585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 143994269 143994269 + Missense_Mutation SNP A A G rs28930074 TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . CYP11B2 NM_000498 exon7 c.T1154C p.V385A CTCACCACTCGCT . 131.0 20.0 68.0 0.0 . 90 DICER1 23405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95574719 95574719 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . DICER1 NM_030621 exon16 c.A2378G p.Y793C GGAGGATAGAGCT . 69.0 21.0 78.0 0.0 . 961 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 196866480 196866480 + Silent SNP A A T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . DNAH7 NM_018897 exon11 c.T1092A p.A364A TGCAGCAGCACAG . 112.0 41.0 135.0 0.0 . 102 DPYSL2 1808 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 26485436 26485436 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . DPYSL2 NM_001197293 exon7 c.G985T p.V329L GGACATGTGCTGA . 25.0 5.0 63.0 0.0 . 153 DSCAML1 57453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 117352790 117352790 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . DSCAML1 NM_020693 exon12 c.G2627A p.R876Q ATGGGCCGCTCAC . 81.0 28.0 107.0 0.0 . 159 DSEL 92126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 65179142 65179142 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . DSEL NM_032160 exon2 c.G2734T p.D912Y AAGCATCTACAAA . 73.0 23.0 94.0 0.0 . 157 EEA1 8411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 93205145 93205145 + Silent SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . EEA1 NM_003566 exon17 c.T2109C p.H703H ACTGCAATGTTCT . 62.0 38.0 54.0 0.0 . 229 EPB41L4A 64097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 111598279 111598279 + Splice_Site SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . EPB41L4A NM_022140 exon8 c.555-1G>A . TGACCCCTACACC . 61.0 20.0 57.0 0.0 . 91 EPHA8 2046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 22902830 22902830 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . EPHA8 NM_020526 exon3 c.G280A p.A94T GACGGCGCCCGGC . 177.0 76.0 194.0 0.0 . 1380 ESRRB 2103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 76905705 76905705 + Silent SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ESRRB NM_004452 exon4 c.G9A p.S3S GTCCTCGGACGAC . 67.0 29.0 96.0 0.0 . 188 FADD 8772 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 70049616 70049616 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FADD NM_003824 exon1 c.C51T p.S17S GTCGAGCAGCGAG . 101.0 34.0 122.0 0.0 . 660 FAM124B 79843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 225266002 225266002 + Nonsense_Mutation SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FAM124B NM_024785 exon1 c.A484T p.R162X CTTCTCTCTGCAG . 82.0 30.0 69.0 0.0 . 92 FAM160A1 729830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 152550986 152550986 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_001109977 exon8 c.G1111A p.D371N ATCCTAGACACTC . 50.0 13.0 74.0 0.0 . . FAM179A 165186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 29222109 29222109 + Nonsense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FAM179A NM_199280 exon4 c.G202T p.G68X CTGCGTGGACTCG . 59.0 15.0 78.0 0.0 . 26 FHOD3 80206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 34174853 34174853 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FHOD3 NM_025135 exon7 c.C710A p.T237K TTGACACGAAAAG . 100.0 39.0 101.0 0.0 . 139 FLG2 388698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152323836 152323836 + Silent SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FLG2 NM_001014342 exon3 c.G6426T p.G2142G CTGTCTCCCGTGA . 188.0 32.0 129.0 0.0 . 151 FMO2 2327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 171178027 171178027 + Missense_Mutation SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FMO2 NM_001460 exon9 c.T1351A p.S451T TTCTGCTCTCTCT . 119.0 25.0 85.0 0.0 . 91 FZD5 7855 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 208632778 208632778 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . FZD5 NM_003468 exon2 c.C686A p.A229D TCGTCGGCACTGA . 70.0 32.0 70.0 1.0 . 660 GABRA6 2559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 161113294 161113294 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . GABRA6 NM_000811 exon2 c.A97G p.S33G AACGTCAGTCGGA . 59.0 23.0 89.0 0.0 . 163 GALK1 2584 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 73761055 73761055 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . GALK1 NM_000154 exon1 c.A163G p.M55V TCACCATAGGCAG . 102.0 34.0 140.0 0.0 . 90 GLCE 26035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 69560737 69560737 + Silent SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . GLCE NM_015554 exon5 c.T1008C p.D336D AAGAGATATATAC . 85.0 32.0 94.0 0.0 . 92 GPR174 84636 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 78427073 78427073 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . GPR174 NM_032553 exon1 c.A569G p.E190G TTGGCGAGTTGAT . 72.0 6.0 84.0 0.0 . 130 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12120854 12120854 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . HIVEP1 NM_002114 exon4 c.G826T p.A276S CAAGGGGCAATGC . 82.0 36.0 102.0 0.0 . 139 HNF4G 3174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 76471204 76471204 + Missense_Mutation SNP A A T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . HNF4G NM_004133 exon8 c.A1025T p.Q342L TTGAGCAAATACA . 136.0 20.0 78.0 0.0 . 187 JMJD7-PLA2G4B 8681 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42126967 42126967 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . JMJD7-PLA2G4B NM_005090 exon2 c.C94T p.L32L CCCTACCTGGACA . 59.0 21.0 84.0 1.0 . 135 KIAA0907 22889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 155891367 155891367 + Nonsense_Mutation SNP A A C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . KIAA0907 NM_014949 exon10 c.T1065G p.Y355X GGATGGATAATAT . 239.0 201.0 180.0 0.0 . 90 KIAA1751 85452 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1890603 1890603 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . KIAA1751 NM_001080484 exon16 c.G1807C p.G603R ACTCGCCCGTCTG . 40.0 12.0 67.0 0.0 . 69 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398284 25398284 + Missense_Mutation SNP C C T rs121913529 bycluster TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 KRAS,NS,haematopoietic_neoplasm,0 KRAS NM_004985 exon2 c.G35A p.G12D ACGCCACCAGCTC . 162.0 75.0 176.0 0.0 . 92875 KRT10 3858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38976377 38976377 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . KRT10 NM_000421 exon5 c.G1079C p.S360T TTATAGCTGGATA . 61.0 24.0 70.0 0.0 . 90 LAMB1 3912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107580787 107580787 + Silent SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . LAMB1 NM_002291 exon25 c.C3408T p.P1136P GCCCCTGGGGTCA . 42.0 18.0 34.0 0.0 . 97 LGALS3BP 3959 ucsc.edu;bcgsc.ca 37 17 76973243 76973243 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . LGALS3BP NM_005567 exon2 c.C31A p.L11M CCAGCAGCCACAC . 28.0 4.0 53.0 0.0 . 515 LRP4 4038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46921486 46921486 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . LRP4 NM_002334 exon4 c.G358A p.G120S AGTAGCCATTCTG . 46.0 13.0 52.0 0.0 . 94 MDC1 9656 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 30681730 30681731 + Frame_Shift_Del DEL AG AG - novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . MDC1 NM_014641 exon3 c.366_367del p.122_123del CAGCAAAGAGAAT . 72.0 25.0 98.0 0.0 . 273 MIR186 406962 ucsc.edu;mdanderson.org 37 1 71533380 71533380 + RNA SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . . . . . GAGAATTCTTTGG . 250.0 95.0 258.0 0.0 . . MRC2 9902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 60742016 60742016 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . MRC2 NM_006039 exon2 c.C226A p.R76S GCCCAGCGCTGGA . 51.0 14.0 45.0 0.0 . 117 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 9084547 9084547 + Missense_Mutation SNP T T G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . MUC16 NM_024690 exon1 c.A7268C p.N2423T GCTGTATTTGTCT . 93.0 6.0 183.0 0.0 . 566 N4BP2L2 10443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 33110720 33110720 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . N4BP2L2 NM_014887 exon2 c.A445G p.I149V CATTTATACCATT . 139.0 50.0 182.0 0.0 . 68 NEO1 4756 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 73541427 73541427 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . NEO1 NM_001172623 exon10 c.C1633T p.L545F CCTAACCTTCGTG . 41.0 23.0 61.0 1.0 . 116 OR13C9 286362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107379836 107379836 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . OR13C9 NM_001001956 exon1 c.C650A p.S217Y GAGTAAGAGATAA . 52.0 21.0 71.0 0.0 . 68 OR2L13 284521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248263223 248263223 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . OR2L13 NM_175911 exon3 c.C546T p.A182A CCCAGCCATGTTG . 153.0 68.0 111.0 0.0 . 70 OR2M3 127062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248366590 248366590 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . OR2M3 NM_001004689 exon1 c.T221C p.I74T TGCTCATCTGCAC . 260.0 46.0 192.0 0.0 . 70 OR5D18 219438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55587642 55587642 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . OR5D18 NM_001001952 exon1 c.C537T p.F179F CTTCTTCTGTGAG . 93.0 28.0 115.0 0.0 . 71 PARG 8505 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 51040916 51040916 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PARG NM_003631 exon16 c.G2580T p.E860D AAGATTCTCTGAA . 150.0 44.0 199.0 0.0 . 948 PCYT1A 5130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 195975135 195975135 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PCYT1A NM_005017 exon5 c.G277T p.A93S CTCGGGCGTGACC . 63.0 26.0 80.0 0.0 . 90 PHRF1 57661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 608998 608998 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PHRF1 NM_020901 exon14 c.G3539T p.R1180L GGTCCCGTGAGAA . 25.0 11.0 35.0 0.0 . 22 PI4K2A 55361 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 99400560 99400560 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PI4K2A NM_018425 exon1 c.C61T p.P21S ACCTTCCCGTCGG . 44.0 18.0 35.0 0.0 . 226 PIGL 9487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 16216896 16216896 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PIGL NM_004278 exon4 c.C462A p.H154Q TGGCCACAGCAAT . 74.0 29.0 99.0 0.0 . 226 PKD1 5310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2158624 2158624 + Missense_Mutation SNP G G C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PKD1 NM_000296 exon15 c.C6544G p.Q2182E CAGTCTGGTAGGT . 46.0 16.0 53.0 0.0 . 91 PKMYT1 9088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3024301 3024301 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PKMYT1 NM_182687 exon6 c.G1097A p.G366D AGCACACCCCAGG . 105.0 35.0 117.0 0.0 . 765 PLEKHA5 54477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 19436367 19436367 + Silent SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PLEKHA5 NM_001256470 exon12 c.A1467G p.T489T CAAGACATTAGGA . 66.0 36.0 57.0 0.0 . 227 POU5F1B 5462 hgsc.bcm.edu;broad.mit.edu 37 8 128428177 128428199 + Frame_Shift_Del DEL ATGGGGGGCGGAGCCGGGCTGGG ATGGGGGGCGGAGCCGGGCTGGG - novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 ATGGGGGGCGGAGCCGGGCTGGG ATGGGGGGCGGAGCCGGGCTGGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_001159542 exon1 c.66_88del p.22_30del TGGGCCATGGGGG . 76.0 0.0 57.0 0.0 . . PRKACB 5567 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 84662426 84662427 + Splice_Site INS - - TA novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PRKACB NM_002731 exon6 c.546+1->TA . ATCCAGGTATGAC . 124.0 50.0 155.0 0.0 . 1083 PTCHD2 57540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11591710 11591710 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PTCHD2 NM_020780 exon17 c.C3318T p.H1106H GTCCCACGGGGCA . 96.0 31.0 104.0 0.0 . 209 PTPRB 5787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 70953301 70953301 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . PTPRB NM_001109754 exon18 c.G4536A p.E1512E CTGCAGCTCAAAG . 173.0 47.0 155.0 0.0 . 226 QRICH2 84074 broad.mit.edu;mdanderson.org 37 17 74271920 74271920 + Missense_Mutation SNP A A C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . QRICH2 NM_032134 exon18 c.T4964G p.I1655S GCCGAAATCTGGG . 18.0 6.0 23.0 0.0 . 94 RASAL3 64926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15569403 15569403 + Silent SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_022904 exon7 c.C726A p.A242A CCGCTCGGCACCC . 26.0 16.0 40.0 0.0 . . RBP3 5949 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 48390301 48390301 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . RBP3 NM_002900 exon1 c.A577G p.I193V GCAGGATGGTGTT . 121.0 6.0 159.0 0.0 . 153 RECK 8434 hgsc.bcm.edu;broad.mit.edu 37 9 36116999 36116999 + Missense_Mutation SNP A A T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . RECK NM_021111 exon17 c.A2078T p.Q693L AACCACAGGTCTG . 78.0 4.0 93.0 0.0 . 93 REV1 51455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 100046405 100046405 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . REV1 NM_016316 exon9 c.A1444G p.I482V CTGGTATATCTGC . 169.0 62.0 246.0 0.0 . 92 RGS12 6002 broad.mit.edu;mdanderson.org 37 4 3415912 3415912 + Missense_Mutation SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . RGS12 NM_002926 exon5 c.T2134A p.W712R GCCAGCTGGGCCG . 11.0 3.0 24.0 0.0 . 226 RIPK3 11035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24808429 24808429 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . RIPK3 NM_006871 exon3 c.C263T p.P88L GGCTTGGGATCTT . 57.0 26.0 50.0 0.0 . 946 ROCK1 6093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 18586398 18586398 + Missense_Mutation SNP T T G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ROCK1 NM_005406 exon16 c.A1799C p.D600A TCTTTGTCTGTTT . 46.0 19.0 75.0 0.0 . 1026 RP1 6101 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 55533949 55533949 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . RP1 NM_006269 exon2 c.C423T p.P141P CCACCCCGTAGCC . 109.0 25.0 47.0 0.0 . 102 SAR1B 51128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 133945276 133945276 + Silent SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SAR1B NM_001033503 exon6 c.A333T p.S111S TTCTTTTGACTCT . 78.0 29.0 94.0 0.0 . 227 SEC16A 9919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139371483 139371483 + Silent SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_014866 exon3 c.G585T p.V195V GGTGACCACACCG . 52.0 24.0 54.0 0.0 . . SESN2 83667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 28595721 28595721 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SESN2 NM_031459 exon2 c.G118A p.G40S CGGCGAGGCCCTC . 30.0 9.0 50.0 0.0 . 230 SFRP2 6423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 154709533 154709533 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SFRP2 NM_003013 exon1 c.G455T p.C152F GGGATGCAAAGGT . 57.0 25.0 60.0 0.0 . 659 SHOX 6473 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 595367 595368 + Frame_Shift_Del DEL AA AA - novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SHOX NM_000451 exon3 c.292_293del p.98_98del GAATGCAAAGAGA . 74.0 22.0 122.0 0.0 . 40 SLC12A2 6558 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 127466833 127466833 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SLC12A2 NM_001046 exon5 c.G1123T p.A375S GCCTTTGCCAACG . 123.0 48.0 208.0 1.0 . 94 SLCO2A1 6578 broad.mit.edu;bcgsc.ca 37 3 133673920 133673920 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SLCO2A1 NM_005630 exon4 c.T515C p.L172P ACCATCAGGCCCC . 106.0 5.0 96.0 0.0 . 90 SMEK2 57223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 55844336 55844336 + Missense_Mutation SNP G G A rs200421664 byfrequency TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SMEK2 NM_001122964 exon1 c.C86T p.S29F TAAGTGGAGGAGA . 69.0 23.0 104.0 0.0 G|0.997;A|0.003 228 SNRPN 6638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 25222974 25222974 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SNRPN NM_022807 exon11 c.C470A p.A157E TTGCTGCGACTGC . 39.0 14.0 47.0 0.0 . 469 SOX30 11063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 157053726 157053726 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SOX30 NM_007017 exon4 c.A1391G p.H464R AGGGCATGTACTG . 48.0 17.0 39.0 0.0 . 91 SPATA31C1 441452 bcgsc.ca;mdanderson.org 37 9 90537352 90537352 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_001145124 exon4 c.C2530G p.P844A CTACTCCCTAGAA . 245.0 66.0 293.0 1.0 . . SRGAP3 9901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 9101941 9101941 + Missense_Mutation SNP T T G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SRGAP3 NM_014850 exon6 c.A775C p.I259L CATGGATGTAGTA . 83.0 33.0 103.0 0.0 . 344 SRSF12 135295 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 89827583 89827583 + Silent SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SRSF12 NM_080743 exon1 c.C24T p.P8P GGTGTTGGGGGGC . 98.0 43.0 76.0 0.0 . 90 STMN4 81551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 27099966 27099966 + Silent SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . STMN4 NM_030795 exon3 c.C57T p.F19F GGAGCAGAACAAG . 47.0 29.0 56.0 0.0 . 154 STOX2 56977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 184931082 184931082 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . STOX2 NM_020225 exon3 c.G1091A p.R364Q CTCATCGGAAGTC . 47.0 21.0 89.0 0.0 . 22 SUSD2 56241 broad.mit.edu;bcgsc.ca 37 22 24583365 24583365 + Missense_Mutation SNP G G T rs141759016 byfrequency;alternate_allele TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . SUSD2 NM_019601 exon11 c.G1838T p.R613L GCGGGCGCGTCCT . 45.0 4.0 52.0 0.0 G|0.999;A|0.001 91 TAL2 6887 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 108425042 108425042 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TAL2 NM_005421 exon1 c.G265T p.D89Y CTGGAGGACAGAA . 76.0 36.0 91.0 1.0 . 636 TBPL2 387332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 55881125 55881125 + Missense_Mutation SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TBPL2 NM_199047 exon7 c.C1100A p.P367H AGAATAGGATAGA . 39.0 16.0 97.0 0.0 . 90 TEKT1 83659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 6718550 6718550 + Silent SNP G G T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TEKT1 NM_053285 exon5 c.C561A p.I187I GAAGCAGATATCA . 122.0 6.0 158.0 0.0 . 92 TIAM2 26230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155498070 155498070 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TIAM2 NM_012454 exon9 c.C2482T p.P828S ATCAAGCCAGAGC . 72.0 30.0 71.0 0.0 . 93 TNFRSF4 7293 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 1148033 1148033 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TNFRSF4 NM_003327 exon4 c.G422T p.C141F GGCTTGCAGGCCT . 47.0 18.0 35.0 0.0 . 227 TNIP1 10318 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150441768 150441768 + Missense_Mutation SNP C C A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TNIP1 NM_001252385 exon4 c.G277T p.D93Y TTGAGTCCTTTCC . 60.0 28.0 80.0 1.0 . 91 TONSL 4796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145660436 145660436 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TONSL NM_013432 exon19 c.G2970C p.Q990H GAGGTCCTGTGGG . 106.0 26.0 59.0 0.0 . 92 TOPORS 10210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 32543636 32543636 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TOPORS NM_005802 exon3 c.T887C p.L296S GGGACTAATCTGT . 35.0 9.0 31.0 0.0 . 230 TPO 7173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 1459934 1459934 + Nonsense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TPO NM_175719 exon7 c.G699A p.W233X GGCATGGGGACAA . 71.0 22.0 101.0 0.0 . 332 TRAK2 66008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 202254174 202254174 + Missense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TRAK2 NM_015049 exon12 c.G1246A p.G416S AGCGGCCCCGTGT . 60.0 14.0 47.0 0.0 . 90 TSKU 25987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 76506706 76506706 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . TSKU NM_015516 exon2 c.A46G p.T16A GCCCAGACAACCC . 29.0 10.0 36.0 0.0 . 90 USP40 55230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234442150 234442150 + Silent SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . USP40 NM_018218 exon10 c.A1479G p.K493K CTGGGATTTCCGA . 107.0 26.0 123.0 0.0 . 455 USP9X 8239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 41002598 41002598 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . USP9X NM_001039591 exon10 c.C1216G p.Q406E CTTCATCAGCCAC . 179.0 129.0 165.0 0.0 . 563 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 82816091 82816091 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . VCAN NM_004385 exon7 c.T1966C p.F656L GAATTGTTTCCTT . 60.0 19.0 89.0 0.0 . 238 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168102933 168102933 + Silent SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . XIRP2 NM_152381 exon9 c.C5031T p.I1677I AGGCATCTTAATT . 163.0 32.0 189.0 0.0 . 104 ZC3H7A 29066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 11859416 11859416 + Missense_Mutation SNP T T A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ZC3H7A NM_014153 exon14 c.A1648T p.N550Y TTCCATTGCCGCC . 38.0 13.0 59.0 0.0 . 94 ZFYVE26 23503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 68274609 68274609 + Missense_Mutation SNP G G A novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ZFYVE26 NM_015346 exon5 c.C392T p.A131V CCTACTGCACCCT . 62.0 27.0 89.0 0.0 . 162 ZNF217 7764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 52198188 52198188 + Missense_Mutation SNP T T C novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ZNF217 NM_006526 exon1 c.A1178G p.H393R CTGGAGTGCAAGA . 63.0 26.0 79.0 0.0 . 723 ZNF415 55786 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 53612297 53612297 + Missense_Mutation SNP C C G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ZNF415 NM_018355 exon4 c.G1001C p.G334A GCTTTGCCACACT . 39.0 12.0 45.0 0.0 . 91 ZNF695 57116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247150556 247150556 + Missense_Mutation SNP A A G novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_020394 exon4 c.T1261C p.S421P GGTATGAAAACCA . 59.0 15.0 34.0 0.0 . . ZNF718 255403 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 4 59395 59395 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . NM_001039127 exon2 c.C76T p.Q26X GCCCAGCAGAATT . 226.0 13.0 268.0 0.0 . . ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 57766654 57766654 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . ZNF831 NM_178457 exon1 c.C580T p.Q194X CGGACGCAGACGC . 26.0 9.0 49.0 0.0 . 126 HGS 9146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 79661868 79661869 + Missense_Mutation DNP GG GG TC novel TCGA-MI-A75C-01A-11D-A32G-10 TCGA-MI-A75C-10A-01D-A32G-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ea50cd47-c60a-4696-bd52-1e5fd735adad 95a91613-2d3d-4a43-a127-c826c46835e9 . . . . . p.ED320DH GGCTGAGGACATC . 65.0 27.0 109.0 0.0 . .