Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADAMTS5 11096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 28296456 28296456 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ADAMTS5 NM_007038 exon8 c.G2709A p.Q903Q TCCATCCTGGCAC . 43.0 15.0 56.0 0.0 . 229 AEN 64782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89169543 89169543 + Nonsense_Mutation SNP C C T rs199532354 TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . AEN NM_022767 exon2 c.C103T p.R35X AGGAGCCGACAGC . 23.0 5.0 15.0 0.0 C|0.998;T|0.002 226 AFG3L2 10939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 12356735 12356735 + Silent SNP T T G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . AFG3L2 NM_006796 exon9 c.A1122C p.G374G CTCAGATCCACTA . 51.0 11.0 58.0 0.0 . 90 ALB 213 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 74283386 74283387 + Frame_Shift_Del DEL TG TG - novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ALB NM_000477 exon11 c.1428_1428del p.476_476del AGACTATGTGAGT . 68.0 23.0 111.0 0.0 . 96 ALB 213 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 74285295 74285296 + Frame_Shift_Ins INS - - C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ALB NM_000477 exon13 c.1724_1725insC p.F575fs ATGATTTCGCAGC . 62.0 18.0 51.0 0.0 . 96 ARHGAP11B 89839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 30926529 30926529 + Missense_Mutation SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ARHGAP11B NM_001039841 exon4 c.A454G p.K152E GAGGAAAAGAATA . 431.0 113.0 461.0 0.0 . 22 ASXL2 55252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25965885 25965885 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ASXL2 NM_018263 exon12 c.G3321T p.M1107I ACCCAGCATGAAC . 57.0 13.0 35.0 0.0 . 23 BMPR1B 658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 96052422 96052422 + Missense_Mutation SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . BMPR1B NM_001256793 exon8 c.A925G p.T309A CTAATCACAGACT . 132.0 33.0 162.0 0.0 . 1378 BPIFB4 149954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 31672781 31672781 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . . NM_182519 exon4 c.G761A p.R254H ACACCCGTGTGGC . 33.0 12.0 32.0 0.0 . . C22orf26 55267 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 22 46449729 46449729 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . C22orf26 NM_018280 exon1 c.C245A p.P82Q AAACGCGGAGCAC . 15.0 5.0 12.0 0.0 . 90 C2CD3 26005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 73824849 73824849 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . C2CD3 NM_015531 exon11 c.G1819T p.A607S TGGAGGCGAGTCG . 51.0 5.0 47.0 0.0 . 75 C4orf17 84103 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 100463066 100463066 + Splice_Site SNP G G C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . C4orf17 NM_032149 exon9 c.881-1G>C . ATTTCAGAGGCTG . 176.0 10.0 232.0 0.0 . 90 CACNA1A 773 bcgsc.ca;mdanderson.org 37 19 13325091 13325091 + Missense_Mutation SNP G G C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . CACNA1A NM_001127221 exon40 c.C5899G p.R1967G TCTGCCGGTAGTA . 17.0 4.0 21.0 0.0 . 67 CAMSAP3 57662 ucsc.edu;bcgsc.ca 37 19 7673101 7673101 + Silent SNP G G A rs199927493 byfrequency TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . . NM_001080429 exon7 c.G792A p.A264A GGCCGCGCTGGCC . 37.0 4.0 53.0 0.0 G|0.991;A|0.009 . CAPN11 11131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 44147887 44147887 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . CAPN11 NM_007058 exon14 c.C1627A p.H543N GAGAAGCACAGCG . 31.0 8.0 37.0 0.0 . 136 CBLB 868 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 105586253 105586253 + Splice_Site DEL C C - novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . CBLB NM_170662 exon3 c.168+1G>- . AACTTACCACTTT . 56.0 19.0 68.0 0.0 . 849 CD93 22918 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 20 23066708 23066708 + Nonsense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . CD93 NM_012072 exon1 c.C122A p.S41X TTGCCCGAGTGGG . 13.0 4.0 33.0 0.0 . 153 CEP85L 387119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 118887408 118887408 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . . NM_001178035 exon4 c.G313T p.V105L GCATCACATGGGC . 46.0 13.0 61.0 0.0 . . COL5A2 1290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 189907465 189907465 + Missense_Mutation SNP G G C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . COL5A2 NM_000393 exon49 c.C3506G p.P1169R GGTCCAGGGATTC . 42.0 17.0 46.0 0.0 . 92 COQ6 51004 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 74428466 74428466 + Nonsense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . COQ6 NM_182476 exon11 c.G1237T p.E413X GGTTATGAAACAG . 40.0 13.0 52.0 0.0 . 90 CTDSPL2 51496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 44816346 44816346 + Silent SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . CTDSPL2 NM_016396 exon13 c.T1375C p.L459L TTTCGCTTGCATG . 49.0 24.0 46.0 0.0 . 90 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41268766 41268766 + Missense_Mutation SNP A A C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 CTNNB1,NS,Wilms_tumour,0 CTNNB1 NM_001098209 exon7 c.A1004C p.K335T ACGAAAAACTACT . 111.0 24.0 94.0 0.0 . 24361 CYP26B1 56603 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 72374800 72374800 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . CYP26B1 NM_019885 exon1 c.G164T p.G55V GGGAAGCCCATGG . 49.0 11.0 63.0 0.0 . 92 EFTUD2 9343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42964016 42964016 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . EFTUD2 NM_004247 exon3 c.G208A p.E70K CCTCCTCGGCTGT . 50.0 12.0 58.0 0.0 . 91 EIF4E 1977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 99850252 99850252 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . EIF4E NM_001130679 exon1 c.C12T p.V4V CGGTTCGACAGTC . 46.0 12.0 54.0 0.0 . 1270 EIF4G2 1982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10824602 10824602 + Missense_Mutation SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . EIF4G2 NM_001042559 exon11 c.A971G p.N324S ATTTGATTGATCG . 54.0 15.0 58.0 0.0 . 91 ENTPD1 953 hgsc.bcm.edu;bcgsc.ca 37 10 97624496 97624496 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ENTPD1 NM_001164178 exon9 c.G1240T p.A414S TCTTACGCTGGAG . 63.0 4.0 66.0 0.0 . 93 EPHA2 1969 broad.mit.edu;mdanderson.org 37 1 16464616 16464616 + Nonsense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . EPHA2 NM_004431 exon5 c.G1044A p.W348X GGGCGTCCAGCGC . 15.0 4.0 20.0 0.0 . 1419 EWSR1 2130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29664336 29664336 + Missense_Mutation SNP C C G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . EWSR1 NM_013986 exon1 c.C11G p.T4R CGTCCACGGGTGA . 43.0 11.0 56.0 0.0 . 3375 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 65149117 65149117 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . EYS NM_001142800 exon27 c.C5773A p.Q1925K AGTCTTGCTTGAC . 90.0 16.0 146.0 0.0 . 660 FBLN1 2192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 45960824 45960824 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . FBLN1 NM_006485 exon15 c.G1758T p.R586S CTGCAGGGTTCTT . 41.0 15.0 55.0 0.0 . 515 GABRQ 55879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 151821124 151821124 + Missense_Mutation SNP G G C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . GABRQ NM_018558 exon9 c.G1279C p.A427P CAGCTGGCCACCT . 84.0 44.0 64.0 0.0 . 133 GAN 8139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 81390417 81390417 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . GAN NM_022041 exon4 c.C661T p.L221L TCAGCTCTGTGGG . 149.0 46.0 132.0 0.0 . 92 GGN 199720 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 38877684 38877684 + Missense_Mutation SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . GGN NM_152657 exon3 c.T218C p.L73P AGGGGCAGGGTCG . 44.0 9.0 64.0 0.0 . 90 GRPEL2 134266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 148725167 148725167 + Missense_Mutation SNP C C G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . GRPEL2 NM_152407 exon1 c.C65G p.A22G GTGCCGCGTGGGA . 91.0 18.0 133.0 0.0 . 91 HERC2 8924 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 28419597 28419597 + Missense_Mutation SNP A A C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . HERC2 NM_004667 exon65 c.T10001G p.V3334G TCGTGGACAGAGG . 211.0 67.0 211.0 0.0 . 234 HIGD1A 25994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42826810 42826810 + Missense_Mutation SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . HIGD1A NM_001099668 exon4 c.A277G p.M93V AGCCCATACCTAA . 538.0 108.0 648.0 0.0 . 226 IL18BP 10068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71711533 71711533 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . IL18BP NM_001145057 exon3 c.C165T p.P55P CCAGCCCCCAGTG . 20.0 6.0 26.0 0.0 . 90 INTS2 57508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 59947136 59947136 + Missense_Mutation SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . INTS2 NM_020748 exon21 c.A3016G p.I1006V CTGCAATGTACAT . 70.0 22.0 71.0 0.0 . 206 KCNQ5 56479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 73843259 73843259 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . KCNQ5 NM_001160133 exon11 c.G1420A p.E474K ACAGCCGAGGGCA . 48.0 12.0 92.0 0.0 . 158 KIAA0232 9778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 6863165 6863165 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . KIAA0232 NM_014743 exon7 c.C1056T p.S352S TAGTAGCAGTAGC . 88.0 21.0 107.0 0.0 . 92 KIAA1217 56243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 24508649 24508649 + Silent SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . KIAA1217 NM_019590 exon2 c.A165G p.S55S TGGTTCAGTTTCC . 66.0 22.0 80.0 0.0 . 98 KRT78 196374 broad.mit.edu;mdanderson.org 37 12 53242690 53242690 + Nonsense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . KRT78 NM_173352 exon1 c.C25T p.Q9X CCCTCTGGGCCCG . 19.0 8.0 22.0 0.0 . 188 KRT81 3887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52681386 52681386 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . KRT81 NM_002281 exon6 c.G1020T p.K340N CTGGCACTTGGCA . 50.0 18.0 57.0 0.0 . 90 LAMC1 3915 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 183101589 183101589 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . LAMC1 NM_002293 exon21 c.G3621A p.T1207T TGATACGTCAACT . 101.0 37.0 103.0 1.0 . 252 LAMC3 10319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 133942439 133942439 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 LAMC3,NS,carcinoma,0 LAMC3 NM_006059 exon14 c.G2440A p.G814R TGTAGCGGGAACG . 26.0 10.0 42.0 0.0 . 93 LDHAL6A 160287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 18499168 18499168 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . LDHAL6A NM_144972 exon6 c.G712T p.G238C TACAGTGGCTATG . 75.0 16.0 105.0 0.0 . 90 LRRC37B 114659 broad.mit.edu;ucsc.edu 37 17 30351740 30351740 + Nonsense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . LRRC37B NM_052888 exon2 c.G1690T p.G564X TTCCAAGGAAACT . 446.0 137.0 610.0 2.0 . 92 LRRC8E 80131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7960521 7960521 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . LRRC8E NM_001268284 exon3 c.G33A p.T11T GTTCACGGAACAG . 56.0 21.0 109.0 0.0 . 92 MAN2B1 4125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12757461 12757461 + Silent SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . MAN2B1 NM_000528 exon24 c.A3009G p.S1003S TTGAACTGAGGCC . 62.0 13.0 72.0 0.0 . 94 MAT1A 4143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 82036284 82036284 + Missense_Mutation SNP A A C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . MAT1A NM_000429 exon6 c.T616G p.S206A GCACAGAGATGAC . 16.0 8.0 19.0 0.0 . 90 MUC2 4583 broad.mit.edu;bcgsc.ca 37 11 1092920 1092920 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . MUC2 NM_002457 exon30 c.C4739A p.T1580N CACAGACCCCAAC . 50.0 5.0 68.0 2.0 . 90 MXRA5 25878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 3248697 3248697 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . MXRA5 NM_015419 exon3 c.C306T p.L102L AGAGCTGAGGTCT . 35.0 17.0 55.0 0.0 . 136 NCKAP1L 3071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54910687 54910687 + Missense_Mutation SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NCKAP1L NM_005337 exon11 c.T1006C p.F336L GGCCAGTTTCATT . 78.0 19.0 97.0 0.0 . 93 NELL1 4745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 21592455 21592455 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NELL1 NM_006157 exon18 c.G2126T p.W709L ACAATTGGACCCA . 69.0 12.0 82.0 0.0 . 155 NFU1 27247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 69650764 69650764 + Missense_Mutation SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NFU1 NM_001002755 exon3 c.G252T p.R84S CATGGTCCTTGTC . 90.0 25.0 98.0 0.0 . 90 NOL6 65083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 33465828 33465828 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NOL6 NM_022917 exon19 c.G2432A p.S811N TCTGGGCTCTGCA . 41.0 12.0 45.0 0.0 . 92 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139405212 139405212 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NOTCH1 NM_017617 exon17 c.G2633A p.C878Y TGCCGGCACGGGC . 38.0 17.0 73.0 0.0 . 5459 NPTX2 4885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 98257930 98257930 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NPTX2 NM_002523 exon5 c.C1285T p.L429F CGTCTCCTTGACT . 50.0 12.0 64.0 0.0 . 515 NSRP1 84081 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 28506153 28506156 + Frame_Shift_Del DEL AAGG AAGG - novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 AAGG AAGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . NSRP1 NM_032141 exon5 c.346_349del p.116_117del AGAAAAAAGGAAC . 256.0 58.0 290.0 0.0 . 91 OR51I1 390063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5462429 5462429 + Missense_Mutation SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . OR51I1 NM_001005288 exon1 c.A316G p.I106V TGTGGATGAAGAA . 70.0 20.0 75.0 0.0 . 69 PADI1 29943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17565194 17565194 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PADI1 NM_013358 exon13 c.C1542T p.A514A GGCAGCCCAGTTT . 55.0 18.0 120.0 0.0 . 68 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134071449 134071449 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PCDH10 NM_032961 exon1 c.G154A p.G52R GCTCGCGGGTTTC . 79.0 19.0 94.0 0.0 . 92 PCDHA7 56141 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140214367 140214367 + Frame_Shift_Del DEL C C - novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PCDHA7 NM_031852 exon1 c.399delC p.F133fs GGTGTTCCCAGCG . 328.0 94.0 405.0 0.0 . 94 PDE3A 5139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 20766493 20766493 + Silent SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PDE3A NM_000921 exon3 c.C1128A p.A376A GAGAGCCGTGAGC . 71.0 22.0 73.0 0.0 . 94 PLCB4 5332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 9449315 9449315 + Nonsense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PLCB4 NM_001172646 exon35 c.G3346T p.E1116X GAACGGGAAAGGT . 49.0 18.0 57.0 0.0 . 274 PNLDC1 154197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160237044 160237044 + Missense_Mutation SNP G G T rs137878641 byfrequency;alternate_allele TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PNLDC1 NM_173516 exon13 c.G1006T p.A336S GTTCACGCGAGCA . 41.0 11.0 47.0 0.0 G|0.999;A|0.001 90 POSTN 10631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 38162065 38162065 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . POSTN NM_006475 exon5 c.G500A p.S167N ATGTGACTATGTA . 317.0 102.0 356.0 0.0 . 516 PPIG 9360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 170460700 170460700 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PPIG NM_004792 exon4 c.G65T p.G22V CAGCTGGAAGAGT . 70.0 26.0 89.0 0.0 . 92 PRDM9 56979 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 23526529 23526529 + Silent SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PRDM9 NM_020227 exon11 c.A1332G p.P444P AGATCCACACAGC . 87.0 25.0 115.0 1.0 . 139 PRKCQ 5588 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 6498670 6498670 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PRKCQ NM_006257 exon15 c.C1613A p.T538N CAGAAGGTATTCG . 72.0 16.0 50.0 0.0 . 1380 PRMT10 90826 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 148579096 148579097 + Nonsense_Mutation INS - - AGGCTTTTTAGTTGCA novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PRMT10 NM_138364 exon8 c.1177_1178insTGCAACTAAAAAGCCT p.D393_K394delinsCNX TCTTATCAGGCTT . 119.0 21.0 102.0 0.0 . 91 PRUNE2 158471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 79320343 79320343 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PRUNE2 NM_015225 exon8 c.G6847A p.D2283N AAGCATCAGGAAC . 90.0 16.0 93.0 0.0 . 157 PSMA1 5682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 14535383 14535383 + Missense_Mutation SNP G G C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . PSMA1 NM_148976 exon7 c.C412G p.L138V TAAGGAGACCAAC . 61.0 17.0 82.0 0.0 . 92 RAG1 5896 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 36596559 36596559 + Missense_Mutation SNP G G T rs138101978 TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . RAG1 NM_000448 exon2 c.G1705T p.A569S GTGTCTGCTTTGA . 62.0 18.0 80.0 1.0 G|1.000;T|0.000 230 SCN1B 6324 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35524522 35524522 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SCN1B NM_001037 exon3 c.C327T p.T109T CATCACCAATGTC . 65.0 26.0 73.0 1.0 . 91 SCN2A 6326 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 166229735 166229735 + Missense_Mutation SNP G G C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SCN2A NM_001040143 exon20 c.G3850C p.V1284L GTATAGGTCTCAC . 96.0 21.0 102.0 0.0 . 142 SETD2 29072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 47162395 47162395 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SETD2 NM_014159 exon3 c.C3731T p.P1244L ACATGTGGTATCT . 71.0 7.0 79.0 0.0 . 1273 SEZ6L2 26470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 29891311 29891311 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SEZ6L2 NM_001243332 exon9 c.C1447T p.P483S CCCCTGGGCGATA . 50.0 14.0 61.0 0.0 . 92 SIGLEC9 27180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51630358 51630358 + Missense_Mutation SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SIGLEC9 NM_001198558 exon4 c.G820A p.V274I TGTGCAGTTGATG . 40.0 8.0 52.0 0.0 . 91 SLC47A1 55244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 19459199 19459199 + Missense_Mutation SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SLC47A1 NM_018242 exon9 c.A830G p.Y277C GGGCCTATGAGGT . 22.0 7.0 25.0 0.0 . 90 SOX2 6657 ucsc.edu;mdanderson.org 37 3 181431520 181431520 + RNA SNP T T G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SOX2 . . . . TAATATTTAGAGC . 198.0 61.0 251.0 0.0 . 650 SPANXC 64663 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 140335728 140335728 + Silent SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SPANXC NM_022661 exon2 c.C216A p.A72A CTCTCGGGCGTGG . 308.0 165.0 219.0 0.0 . 62 SPANXE 171489 broad.mit.edu;bcgsc.ca 37 X 140785700 140785700 + Silent SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . . NM_145665 exon2 c.C216A p.A72A CTTTCGGGCGTGG . 552.0 95.0 397.0 0.0 . . SPRR1B 6699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153004986 153004986 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . SPRR1B NM_003125 exon2 c.G165A p.E55E GCCCGAGCCCTGC . 66.0 9.0 86.0 0.0 . 69 TFAP2E 339488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 36060160 36060160 + Silent SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . TFAP2E NM_178548 exon7 c.C1212T p.A404A CACTGCCTTCCAG . 44.0 10.0 73.0 0.0 . 90 TFG 10342 broad.mit.edu;mdanderson.org 37 3 100467366 100467366 + Silent SNP T T G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . TFG NM_006070 exon8 c.T1194G p.G398G ACCTGGTTATCGA . 23.0 6.0 32.0 0.0 . 861 TLN2 83660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63031555 63031555 + Silent SNP A A G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . TLN2 NM_015059 exon28 c.A3696G p.P1232P ACCTCCAAGCACG . 37.0 7.0 37.0 0.0 . 573 TMPRSS13 84000 ucsc.edu;bcgsc.ca 37 11 117782522 117782522 + Missense_Mutation SNP A A T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . TMPRSS13 NM_001206790 exon6 c.T863A p.I288N CTCAAGATTGAGA . 31.0 4.0 51.0 0.0 . 91 TPO 7173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 1499804 1499804 + Missense_Mutation SNP C C T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 TPO,NS,carcinoma,0 TPO NM_001206744 exon12 c.C2050T p.R684C CAGAGGCGTGAGC . 36.0 12.0 32.0 0.0 . 332 TSTA3 7264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144695934 144695934 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . TSTA3 NM_003313 exon8 c.C717T p.P239P GATGATGGGCTCC . 122.0 43.0 70.0 0.0 . 91 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179439946 179439946 + Missense_Mutation SNP A A C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . TTN NM_001267550 exon326 c.T70913G p.I23638S TGATAGATGCCAC . 53.0 15.0 77.0 0.0 . 636 VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 62226473 62226473 + Missense_Mutation SNP A A C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . VPS13C NM_020821 exon49 c.T5813G p.F1938C AAGTCAAATTGGA . 236.0 10.0 280.0 0.0 . 92 VPS72 6944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151158055 151158055 + Silent SNP C C A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . VPS72 NM_001271087 exon3 c.G312T p.P104P ACCAGCCGGGGTG . 139.0 36.0 97.0 0.0 . 154 VSIG4 11326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 65253415 65253415 + Missense_Mutation SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . VSIG4 NM_001100431 exon2 c.A313G p.M105V CATCCATCTCCAG . 62.0 27.0 52.0 0.0 . 130 WNT2 7472 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 116960721 116960721 + Silent SNP G G A rs139486726 TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . WNT2 NM_003391 exon2 c.C210T p.A70A CCACTCGGCCACG . 50.0 13.0 36.0 0.0 G|1.000;A|0.000 1011 ZCCHC2 54877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 60241963 60241963 + Silent SNP T T G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ZCCHC2 NM_017742 exon13 c.T2649G p.P883P GGTGCCTCAAATT . 102.0 25.0 114.0 0.0 . 432 ZNF230 7773 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 44515439 44515440 + Frame_Shift_Ins INS - - A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ZNF230 NM_006300 exon5 c.1248_1249insA p.R416fs CTGCCGGAAAAAA . 113.0 24.0 120.0 0.0 . 90 ZNF362 149076 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 33760792 33760792 + Silent SNP C C G novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ZNF362 NM_152493 exon8 c.C1032G p.P344P GTGTCCCAACTGC . 171.0 40.0 226.0 1.0 . 68 ZNF469 84627 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 88494198 88494198 + Missense_Mutation SNP G G T novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . . NM_001127464 exon1 c.G320T p.R107M CCTCAAGGCTGGC . 36.0 9.0 41.0 0.0 . . ZNF608 57507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 123979216 123979216 + Silent SNP G G A novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 ZNF608,NS,carcinoma,-1 ZNF608 NM_020747 exon6 c.C4284T p.S1428S AGACTTGCTGCGG . 110.0 27.0 119.0 0.0 . 229 ZNF804A 91752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 185800549 185800549 + Silent SNP T T C novel TCGA-K7-A6G5-01A-11D-A30V-10 TCGA-K7-A6G5-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1ba1022c-bdf7-464b-a527-f69dd5bac5be 9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86 . ZNF804A NM_194250 exon4 c.T426C p.V142V AACTGTTACTGTG . 66.0 19.0 70.0 0.0 . 163