Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADSSL1	122622	ucsc.edu;bcgsc.ca	37	14	105196358	105196358	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ADSSL1	NM_199165	exon1	c.T129C	p.S43S	AAGGAGTCTCCAG	.	48.0	5.0	48.0	1.0	.	515
AKR1C2	1646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	5043738	5043738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	AKR1C2	NM_001354	exon4	c.G220A	p.V74M	TCTTCACACTGCC	.	241.0	15.0	214.0	1.0	.	514
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101333093	101333093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ANO4	NM_178826	exon3	c.T56A	p.V19E	TTCTAGTGGCCAA	.	171.0	37.0	165.0	0.0	.	96
BCL2	596	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	60795937	60795937	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	BCL2	NM_000633	exon3	c.G641A	p.W214X	GACAGCCAGGAGA	.	96.0	36.0	76.0	0.0	.	1271
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	50357553	50357553	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	BRD7	NM_013263	exon12	c.T1388A	p.L463X	TCCAGTAAACTAT	.	103.0	55.0	107.0	0.0	.	90
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3543984	3543984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001080524	exon3	c.C404T	p.S135F	GAACTGGAAGCTG	.	21.0	8.0	22.0	0.0	.	.
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88478474	88478474	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CEP290	NM_025114	exon35	c.T4593G	p.S1531S	GTGGTGAGATTTT	.	178.0	62.0	151.0	0.0	.	96
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130354582	130354582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	COL6A6	NM_001102608	exon27	c.C5068A	p.L1690M	ACTGGGCTGAAGG	.	58.0	25.0	53.0	0.0	.	76
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	36739445	36739445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CRIM1	NM_016441	exon10	c.G1688A	p.R563H	TCTGTCGCTGTAA	.	144.0	7.0	129.0	0.0	.	118
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52383278	52383278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DNAH1	NM_015512	exon14	c.A2368G	p.K790E	CGGGAGAAGGAGA	.	97.0	5.0	95.0	0.0	.	67
EXOC3	11336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	462403	462403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EXOC3	NM_007277	exon9	c.A1634G	p.E545G	TGGAGGAGGTCTT	.	89.0	11.0	90.0	0.0	.	90
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65612308	65612308	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EYS	NM_001142800	exon17	c.C2727T	p.V909V	ATTGTTGACCATA	.	109.0	43.0	103.0	0.0	.	660
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145580146	145580146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FBXL6	NM_012162	exon7	c.C1039G	p.R347G	CCCCTCGTCCCGG	.	75.0	25.0	70.0	0.0	.	658
FMR1	2332	broad.mit.edu;bcgsc.ca	37	X	147018119	147018119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FMR1	NM_002024	exon10	c.T977C	p.V326A	AAAATGTTCCACA	.	142.0	6.0	109.0	0.0	.	133
GAB1	2549	broad.mit.edu;bcgsc.ca	37	4	144359739	144359739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GAB1	NM_207123	exon4	c.A1181G	p.N394S	ATTTAAACAAATT	.	83.0	4.0	71.0	0.0	.	1146
GRIN1	2902	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	140057102	140057102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GRIN1	NM_001185091	exon15	c.A1987G	p.I663V	GCCATGATCATCG	.	25.0	11.0	19.0	0.0	.	187
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37306331	37306331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HEATR5B	NM_019024	exon3	c.G270T	p.Q90H	AAGTGTCTGAAAA	.	155.0	51.0	139.0	0.0	.	142
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12121666	12121666	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HIVEP1	NM_002114	exon4	c.G1638A	p.L546L	CTTTTTGCTACAG	.	65.0	21.0	62.0	0.0	.	139
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18368567	18368567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KIAA1683	NM_001145304	exon4	c.G3527A	p.R1176H	TCCCGGCGGGTGC	.	11.0	4.0	40.0	0.0	.	92
KPNA7	402569	ucsc.edu;bcgsc.ca	37	7	98790710	98790710	+	Missense_Mutation	SNP	A	A	G	rs188239934	by1000genomes;alternate_allele	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KPNA7	NM_001145715	exon5	c.T568C	p.F190L	CTCTGAACTCTGG	.	47.0	4.0	53.0	0.0	A|0.999;C|0.001	158
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134366278	134366278	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KY	NM_178554	exon2	c.C198T	p.H66H	TTTACCGTGAAAG	.	62.0	16.0	76.0	0.0	.	24
LOC388849	0	bcgsc.ca;mdanderson.org	37	22	20138246	20138246	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	CTCAGTGTCTCTC	.	81.0	17.0	110.0	1.0	.	.
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu	37	X	78010878	78010878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LPAR4	NM_005296	exon2	c.T512C	p.I171T	GCGGTATTTCAGC	.	88.0	4.0	75.0	0.0	.	133
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	192439	192439	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LRRC14B	NM_001080478	exon1	c.C786T	p.D262D	TCCCGACGGCGAG	.	69.0	21.0	76.0	0.0	.	69
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235937265	235937265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LYST	NM_000081	exon19	c.A5661T	p.E1887D	AATATCTTCACCA	.	277.0	87.0	216.0	0.0	.	143
LYVE1	10894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10580711	10580711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LYVE1	NM_006691	exon6	c.G916A	p.E306K	TGGACTCTTCTGG	.	344.0	104.0	327.0	0.0	.	515
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30673414	30673414	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MDC1	NM_014641	exon10	c.C3546T	p.P1182P	AGATGTGGGCTCA	.	265.0	82.0	240.0	0.0	.	273
MFSD8	256471	broad.mit.edu;bcgsc.ca	37	4	128842751	128842751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MFSD8	NM_152778	exon12	c.A1278G	p.I426M	TAATCCTATTAGC	.	122.0	6.0	149.0	0.0	.	92
MOSPD3	64598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100211234	100211234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MOSPD3	NM_001040098	exon4	c.C416T	p.A139V	CCCCAGCGTACCC	.	66.0	25.0	54.0	0.0	.	92
OR1I1	126370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15198366	15198366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR1I1	NM_001004713	exon1	c.G490A	p.A164T	CTCATGGCTCAAC	.	69.0	9.0	88.0	0.0	.	71
OR51I1	390063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5462320	5462320	+	Missense_Mutation	SNP	C	C	T	rs138548705		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR51I1	NM_001005288	exon1	c.G425A	p.R142H	AATATACGGTTGT	.	92.0	36.0	83.0	1.0	C|1.000;T|0.000	69
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247875185	247875185	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR6F1	NM_001005286	exon1	c.G873A	p.T291T	ACGAAGCGTATAG	.	61.0	19.0	55.0	0.0	.	68
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	176564726	176564726	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PAPPA2	NM_021936	exon3	c.C1986T	p.P662P	CTCACCCAAGAGG	.	39.0	14.0	39.0	0.0	.	548
PHYHIPL	84457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61005153	61005174	+	Frame_Shift_Del	DEL	GACCTGTACAGAAGAAGATGGG	GACCTGTACAGAAGAAGATGGG	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GACCTGTACAGAAGAAGATGGG	GACCTGTACAGAAGAAGATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PHYHIPL	NM_032439	exon5	c.933_954del	p.311_318del	ATTTTTGACCTGT	.	90.0	12.0	130.0	0.0	.	90
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32130607	32130607	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PPT2	NM_138717	exon9	c.G807A	p.G269G	TTTTGGGTTGAAG	.	142.0	37.0	140.0	0.0	.	44
PSMD2	5708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184020202	184020202	+	Missense_Mutation	SNP	G	G	A	rs11545182	alternate_allele	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PSMD2	NM_002808	exon6	c.G749A	p.R250H	TACTGCGTTGTGC	.	111.0	31.0	111.0	0.0	G|1.000;|0.000	90
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954378	48954378	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	RB1,NS,carcinoma,0	RB1	NM_000321	exon16	c.1498+1G>-	.	ATAGCAGTAAGTT	.	107.0	55.0	117.0	0.0	.	3784
RNU6-71	100873774	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56469970	56469970	+	RNA	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	AGTAATGTCATCA	.	164.0	12.0	178.0	0.0	.	.
SHQ1	55164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	72890225	72890225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SHQ1	NM_018130	exon4	c.T457A	p.L153I	ATCGTAAGTTTCC	.	153.0	59.0	132.0	0.0	.	137
SLC9A2	6549	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	103317675	103317675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SLC9A2	NM_003048	exon8	c.C1733T	p.T578I	TCCCTACATTTGC	.	180.0	23.0	147.0	0.0	.	157
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1241722	1241722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SNTG2	NM_018968	exon10	c.C782G	p.T261R	TTTACACAGCCCA	.	37.0	10.0	30.0	0.0	.	136
SPAG8	26206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35810300	35810300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SPAG8	NM_001039592	exon6	c.G1207C	p.D403H	GGTAGTCGTGAGG	.	67.0	21.0	86.0	0.0	.	91
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84606921	84606921	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001001670	exon4	c.C1536T	p.S512S	GCACAGCGAGTCT	.	204.0	42.0	203.0	1.0	.	.
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	228884827	228884827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SPHKAP	NM_030623	exon7	c.A743T	p.Q248L	TTTAGCTGTTTAC	.	177.0	52.0	134.0	0.0	.	167
TCIRG1	10312	broad.mit.edu;mdanderson.org	37	11	67811701	67811701	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TCIRG1	NM_006019	exon9	c.C910T	p.L304L	GTGTACCTGGCCC	.	8.0	2.0	15.0	0.0	.	227
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121342007	121342008	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.242_243del	p.81_81del	AGCTAATGCAGCA	.	152.0	46.0	163.0	0.0	.	91
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121342010	121342010	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.240delT	p.A80fs	TAATGCAGCAGCT	.	153.0	46.0	163.0	0.0	.	91
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	129190073	129190073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TMEM132C	NM_001136103	exon9	c.C2560T	p.R854X	GCTCTCCGAAGAG	.	27.0	9.0	37.0	0.0	.	68
TMEM51	55092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15541828	15541828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TMEM51	NM_018022	exon2	c.G245A	p.C82Y	CTATCTGCCTGAG	.	36.0	11.0	41.0	0.0	.	90
TUFT1	7286	broad.mit.edu;bcgsc.ca	37	1	151546769	151546769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TUFT1	NM_020127	exon8	c.G618C	p.R206S	CCAGAGGGAAGCA	.	143.0	9.0	131.0	0.0	.	90
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43529725	43529725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	UMODL1	NM_173568	exon10	c.T1573A	p.C525S	GCCTGGTGCATCA	.	14.0	8.0	24.0	0.0	.	93
USP38	84640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	144135683	144135683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP38	NM_032557	exon9	c.T2554C	p.S852P	GGTATATCCTCTG	.	133.0	6.0	103.0	0.0	.	660
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144135888	144135888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP38	NM_032557	exon9	c.G2759T	p.R920I	ACAGTAGAGTGAC	.	217.0	76.0	172.0	0.0	.	660
ZNF234	10780	broad.mit.edu;bcgsc.ca	37	19	44660620	44660620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_006630	exon6	c.G451T	p.D151Y	CAATGTGATGAGT	.	214.0	12.0	224.0	1.0	.	.
ZSWIM5	57643	broad.mit.edu;bcgsc.ca	37	1	45553672	45553672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ZSWIM5	NM_020883	exon2	c.A833G	p.D278G	AGCTGGTCCCTAT	.	142.0	6.0	137.0	0.0	.	22
MEX3B	84206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82336764	82336765	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	p.G149E	CACCGCGCCGTTG	.	30.0	17.0	60.0	0.0	.	.