Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq A2M 2 ucsc.edu;bcgsc.ca 37 12 9225057 9225057 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . A2M NM_000014 exon31 c.C4001A p.P1334Q TTTTCTGGGAGAA . 45.0 4.0 49.0 0.0 . 515 ACOX3 8310 ucsc.edu;bcgsc.ca 37 4 8372711 8372711 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ACOX3 NM_003501 exon17 c.A1907G p.D636G ACTGCATCGTCTT . 33.0 4.0 25.0 0.0 . 90 ACTR8 93973 ucsc.edu;bcgsc.ca 37 3 53905467 53905467 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ACTR8 NM_022899 exon11 c.G1359A p.G453G AAGATCCCCTTCA . 42.0 4.0 38.0 1.0 . 91 ADAM32 203102 ucsc.edu;bcgsc.ca 37 8 39022715 39022715 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ADAM32 NM_145004 exon9 c.T833C p.I278T TACTAATGTAAGA . 34.0 4.0 32.0 0.0 . 227 ADCY5 111 ucsc.edu;bcgsc.ca 37 3 123018993 123018993 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ADCY5 NM_183357 exon15 c.C2874A p.A958A CAGGTCGGCGTTG . 42.0 4.0 34.0 0.0 . 94 AKR1D1 6718 ucsc.edu;bcgsc.ca 37 7 137773383 137773383 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . AKR1D1 NM_001190907 exon2 c.G130A p.A44T AAGGTTGCTATTG . 47.0 4.0 34.0 0.0 . 91 ALDOB 229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104192169 104192169 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ALDOB NM_000035 exon3 c.C192A p.F64L CACAGAGAAGAGG . 134.0 33.0 126.0 0.0 . 226 AMZ1 155185 ucsc.edu;bcgsc.ca 37 7 2748347 2748347 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . AMZ1 NM_133463 exon4 c.C598A p.H200N CCAGGGCACGGTG . 27.0 4.0 22.0 0.0 . 90 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 21235442 21235442 + Nonsense_Mutation SNP G G T rs200708197 alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . APOB NM_000384 exon26 c.C4298A p.S1433X ATATTCGAATCTA . 73.0 20.0 73.0 0.0 G|0.999;A|0.001 175 ARHGAP31 57514 ucsc.edu;bcgsc.ca 37 3 119133643 119133643 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ARHGAP31 NM_020754 exon12 c.A2867G p.D956G CTCTAGATAGCAA . 25.0 4.0 22.0 0.0 . 92 ARHGEF10L 55160 ucsc.edu;bcgsc.ca 37 1 17981129 17981129 + Splice_Site SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ARHGEF10L NM_018125 exon23 c.2395-2A>G . CTCTGCAGCTTGG . 45.0 5.0 52.0 0.0 . 292 ASZ1 136991 ucsc.edu;bcgsc.ca 37 7 117060227 117060227 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ASZ1 NM_130768 exon4 c.G430T p.V144F AAGCAACATTTGG . 18.0 4.0 23.0 0.0 . 515 ATP4A 495 ucsc.edu;bcgsc.ca 37 19 36049328 36049328 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ATP4A NM_000704 exon10 c.T1436C p.M479T TAGCCCATGGCGT . 43.0 5.0 43.0 0.0 . 91 ATP8B3 148229 broad.mit.edu;bcgsc.ca 37 19 1807173 1807173 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_138813 exon6 c.C609T p.D203D CATGTCGTCCACC . 58.0 7.0 46.0 0.0 . . BCL6B 255877 ucsc.edu;bcgsc.ca 37 17 6927950 6927950 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . BCL6B NM_181844 exon4 c.G632T p.S211I CAGGGAGCCTGGT . 29.0 4.0 39.0 0.0 . 227 BEST1 7439 hgsc.bcm.edu;broad.mit.edu 37 11 61723374 61723376 + In_Frame_Del DEL CAC CAC - novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 CAC CAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . BEST1 NM_004183 exon4 c.432_434del p.144_145del CGTCAGCACCGCA . 35.0 13.0 25.0 0.0 . 90 BRCC3 79184 broad.mit.edu;bcgsc.ca 37 X 154348355 154348355 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . BRCC3 NM_024332 exon11 c.A881G p.N294S AGCAAAACCAACA . 86.0 6.0 100.0 0.0 . 706 BTBD9 114781 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 38256182 38256182 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . BTBD9 NM_052893 exon9 c.C1320T p.V440V CCGACTGACTCCT . 59.0 13.0 67.0 0.0 . 226 C11orf96 387763 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 43964686 43964686 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . C11orf96 NM_001145033 exon1 c.A232G p.K78E GAGGAGAAGGCCA . 31.0 10.0 39.0 0.0 . 46 C4orf51 646603 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 146650320 146650320 + Splice_Site SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001080531 exon4 c.367-1G>T . TTTATAGGCACAT . 201.0 21.0 184.0 1.0 . . C4orf51 646603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 146650321 146650321 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001080531 exon4 c.G367T p.A123S TTATAGGCACATC . 199.0 20.0 184.0 0.0 . . C5orf42 65250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 37227754 37227754 + Silent SNP T T C rs186540080 by1000genomes TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . C5orf42 NM_023073 exon10 c.A1287G p.L429L TGGAGATAGGCTA . 136.0 23.0 110.0 0.0 T|0.999;C|0.000 94 CAV2 858 ucsc.edu;bcgsc.ca 37 7 116140371 116140371 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CAV2 NM_001233 exon2 c.T208C p.W70R AAAGTGTGGATCT . 42.0 4.0 61.0 0.0 . 90 CCDC136 64753 ucsc.edu;bcgsc.ca 37 7 128441554 128441554 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CCDC136 NM_022742 exon4 c.G661T p.G221W TACTCTGGGTTAC . 21.0 4.0 21.0 0.0 . 24 CCDC65 85478 ucsc.edu;bcgsc.ca 37 12 49298806 49298806 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CCDC65 NM_033124 exon2 c.G210T p.R70R CCTTCGGGAAGTC . 40.0 4.0 43.0 0.0 . 92 CCDC80 151887 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 112358316 112358316 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CCDC80 NM_199511 exon2 c.C437A p.A146E TTCCCTGCAAAGC . 41.0 6.0 35.0 0.0 . 92 CD93 22918 ucsc.edu;bcgsc.ca 37 20 23065836 23065836 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CD93 NM_012072 exon1 c.C994A p.Q332K ACCCTTGGGGGCA . 42.0 5.0 36.0 0.0 . 153 CHAT 1103 ucsc.edu;bcgsc.ca 37 10 50863450 50863450 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CHAT NM_020549 exon13 c.C1795T p.L599F CTTCTGCTCCTGA . 50.0 4.0 35.0 0.0 . 514 CHD9 80205 ucsc.edu;bcgsc.ca 37 16 53357978 53357978 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CHD9 NM_025134 exon39 c.T7817C p.V2606A GTCCCGTTGTGAG . 41.0 4.0 39.0 0.0 . 272 CHMP7 91782 ucsc.edu;bcgsc.ca 37 8 23114093 23114093 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CHMP7 NM_152272 exon5 c.C778A p.Q260K TTATCCCAGGAAG . 42.0 4.0 39.0 1.0 . 90 CKS1B 1163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 154947279 154947279 + Nonsense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CKS1B NM_001826 exon1 c.C58T p.R20X GAGTATCGGTTAG . 185.0 53.0 133.0 0.0 . 251 CLCN2 1181 ucsc.edu;bcgsc.ca 37 3 184069898 184069898 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CLCN2 NM_004366 exon22 c.A2318G p.E773G TCCCACTCCAGAA . 31.0 4.0 25.0 0.0 . 90 CLDN17 26285 ucsc.edu;bcgsc.ca 37 21 31538684 31538684 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CLDN17 NM_012131 exon1 c.G252T p.M84I CACACACATGAGG . 26.0 4.0 25.0 0.0 . 92 CMTM2 146225 ucsc.edu;bcgsc.ca 37 16 66613724 66613724 + Silent SNP C C A rs111592429 byfrequency;alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CMTM2 NM_001199317 exon1 c.C214A p.R72R CGCTACCGGTGGG . 67.0 6.0 53.0 0.0 C|0.994;T|0.006 91 CNPPD1 27013 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220037368 220037368 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CNPPD1 NM_015680 exon8 c.A1173G p.Q391Q GGAACATTGCTGA . 37.0 12.0 42.0 0.0 . 90 COL16A1 1307 ucsc.edu;bcgsc.ca 37 1 32120418 32120418 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . COL16A1 NM_001856 exon68 c.A4332G p.R1444R CTCTTGTCTGATG . 45.0 4.0 45.0 0.0 . 98 COPS4 51138 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 83971134 83971134 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . COPS4 NM_016129 exon4 c.A407G p.Q136R CAGGACAAAAGTA . 36.0 8.0 37.0 0.0 . 226 CPB2 1361 ucsc.edu;bcgsc.ca 37 13 46652945 46652945 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CPB2 NM_001872 exon5 c.A476G p.Y159C AAAACATAGAGTG . 30.0 4.0 37.0 0.0 . 92 CPNE3 8895 ucsc.edu;bcgsc.ca 37 8 87563426 87563426 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CPNE3 NM_003909 exon14 c.C1084A p.P362T GAATTTCCAATGA . 44.0 4.0 31.0 0.0 . 117 CPT1A 1374 ucsc.edu;bcgsc.ca 37 11 68527778 68527778 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CPT1A NM_001876 exon17 c.C2057T p.T686I TGGCTTGTTGATA . 46.0 4.0 47.0 0.0 . 149 CYBASC3 220002 ucsc.edu;bcgsc.ca 37 11 61120553 61120553 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CYBASC3 NM_001161454 exon6 c.T503C p.L168P TTTAGGAGGCTGC . 48.0 4.0 41.0 0.0 . 90 CYFIP1 23191 ucsc.edu;bcgsc.ca 37 15 22956491 22956491 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CYFIP1 NM_014608 exon16 c.C1728A p.S576S TGGTTCCAAGAAA . 47.0 4.0 39.0 0.0 . 99 DAB2 1601 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 39376177 39376177 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DAB2 NM_001343 exon13 c.C2169A p.S723S TGGCAGGGAAACT . 77.0 34.0 66.0 0.0 . 227 DAK 26007 ucsc.edu;bcgsc.ca 37 11 61113369 61113369 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DAK NM_015533 exon17 c.G1526T p.W509L AAGCCTGGAAGAG . 37.0 4.0 39.0 0.0 . 115 DCHS1 8642 broad.mit.edu;mdanderson.org 37 11 6654287 6654287 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DCHS1 NM_003737 exon6 c.G2456T p.G819V AAGCGACCTAGGG . 24.0 6.0 18.0 0.0 . 73 DDC 1644 ucsc.edu;bcgsc.ca 37 7 50607706 50607706 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DDC NM_001082971 exon3 c.C222A p.P74P GAAGTAGGGGCTG . 41.0 4.0 45.0 0.0 . 92 DEPDC5 9681 ucsc.edu;bcgsc.ca 37 22 32211144 32211144 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DEPDC5 NM_001242897 exon21 c.C1612A p.P538T CCACACCCCCACC . 48.0 5.0 48.0 0.0 . 519 DNAH9 1770 ucsc.edu;bcgsc.ca 37 17 11593141 11593141 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DNAH9 NM_001372 exon20 c.G4002T p.L1334F GGAGTTGGAGTGC . 47.0 4.0 46.0 0.0 . 168 DOCK10 55619 ucsc.edu;bcgsc.ca 37 2 225634958 225634958 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DOCK10 NM_014689 exon55 c.C6414A p.L2138L TTCGCTGAGCATG . 46.0 4.0 34.0 0.0 . 92 DPP3 10072 ucsc.edu;bcgsc.ca 37 11 66262718 66262718 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DPP3 NM_130443 exon13 c.C1431A p.I477I AGTGATCAACCCA . 25.0 4.0 33.0 0.0 . 46 DPP6 1804 ucsc.edu;bcgsc.ca 37 7 154172081 154172081 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DPP6 NM_130797 exon3 c.A416G p.E139G TCAGTGAAGACTT . 38.0 4.0 37.0 0.0 . 652 EGR2 1959 ucsc.edu;bcgsc.ca 37 10 64575691 64575691 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . EGR2 NM_000399 exon1 c.C99T p.A33A CGACGTGGCGGCG . 47.0 4.0 32.0 0.0 . 92 EIF4G2 1982 ucsc.edu;bcgsc.ca 37 11 10828411 10828411 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . EIF4G2 NM_001042559 exon3 c.A63G p.G21G CCTACTTCCTCCT . 45.0 4.0 39.0 0.0 . 91 ELFN1 392617 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 1784476 1784476 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001128636 exon2 c.C244T p.R82C CTCAGCCGCTTTG . 55.0 9.0 65.0 0.0 . . EML5 161436 broad.mit.edu;bcgsc.ca 37 14 89124556 89124556 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . EML5 NM_183387 exon26 c.C3852A p.S1284S AATGTCGGATTCT . 125.0 7.0 96.0 1.0 . 93 ETS2 2114 ucsc.edu;bcgsc.ca 37 21 40186314 40186314 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ETS2 NM_001256295 exon5 c.A722G p.K241R TTCCAAAGAGTAA . 43.0 4.0 32.0 0.0 . 849 EXOC4 60412 ucsc.edu;bcgsc.ca 37 7 133689750 133689750 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . EXOC4 NM_021807 exon16 c.C2434T p.P812S TATGACCCCCTGG . 41.0 4.0 43.0 0.0 . 159 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 65300537 65300537 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . EYS NM_001142800 exon26 c.T5223C p.D1741D AGAACTATCACTT . 125.0 21.0 128.0 0.0 . 660 FAM129B 64855 ucsc.edu;bcgsc.ca 37 9 130279192 130279192 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FAM129B NM_022833 exon8 c.G917A p.R306Q TCAGTTCGGATGA . 37.0 4.0 36.0 0.0 . 68 FAM171A1 221061 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 15255747 15255747 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FAM171A1 NM_001010924 exon8 c.C1840T p.L614L CCTGTAGTCTTTC . 68.0 13.0 78.0 0.0 . 138 FAM216B 144809 ucsc.edu;bcgsc.ca 37 13 43360911 43360911 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_182508 exon3 c.G112A p.G38R AACCAAGGGCAAC . 38.0 4.0 33.0 0.0 . . FAM73B 84895 ucsc.edu;bcgsc.ca 37 9 131832221 131832221 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FAM73B NM_032809 exon15 c.G1552T p.A518S CAGCTTGCTGAAG . 48.0 4.0 32.0 0.0 . 91 FBXO34 55030 ucsc.edu;bcgsc.ca 37 14 55819116 55819116 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FBXO34 NM_017943 exon2 c.C2008A p.R670R TGCCACCGGTCTC . 45.0 4.0 30.0 0.0 . 228 FLRT3 23767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 14306475 14306475 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FLRT3 NM_013281 exon2 c.T1678A p.S560T TCCTTGAGAAGAG . 154.0 31.0 146.0 0.0 . 91 FNBP4 23360 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 47745708 47745708 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FNBP4 NM_015308 exon14 c.C2336T p.T779I GAGATGGTGGAAT . 52.0 10.0 54.0 0.0 . 91 FNIP2 57600 ucsc.edu;bcgsc.ca 37 4 159791478 159791478 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FNIP2 NM_020840 exon14 c.A2806G p.S936G AGCATCAGCACCC . 38.0 4.0 35.0 0.0 . 68 FSCN1 6624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 5645021 5645021 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FSCN1 NM_003088 exon5 c.C1398T p.G466G GGTGGGCGGGCGC . 50.0 12.0 55.0 0.0 . 91 GALC 2581 broad.mit.edu;ucsc.edu;mdanderson.org 37 14 88416215 88416215 + Missense_Mutation SNP G G C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GALC NM_000153 exon12 c.C1312G p.L438V TAAAAAGAAATCT . 58.0 11.0 65.0 1.0 . 90 GANAB 23193 ucsc.edu;bcgsc.ca 37 11 62394348 62394348 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GANAB NM_198335 exon21 c.C2447T p.P816L GTTACAGGCAGGT . 35.0 4.0 56.0 1.0 . 94 GIT2 9815 broad.mit.edu;bcgsc.ca 37 12 110390905 110390905 + Silent SNP G G T rs143551429 byfrequency;alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GIT2 NM_001135213 exon14 c.C1240A p.R414R TCTGCCGGTTTGT . 171.0 7.0 154.0 2.0 G|0.999;A|0.001 226 GP2 2813 ucsc.edu;bcgsc.ca 37 16 20328667 20328667 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GP2 NM_001007240 exon9 c.C1293T p.H431H CTCCACGTGGATG . 41.0 4.0 41.0 0.0 . 94 GPRIN1 114787 ucsc.edu;bcgsc.ca 37 5 176025338 176025338 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GPRIN1 NM_052899 exon2 c.T1498C p.L500L TCCCCAAGGACCT . 43.0 4.0 37.0 0.0 . 92 GPS1 2873 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80011842 80011842 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GPS1 NM_212492 exon3 c.G345A p.L115L GGCCCTGAAGATG . 34.0 8.0 16.0 0.0 . 226 GRXCR2 643226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 145246178 145246178 + Missense_Mutation SNP C C G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GRXCR2 NM_001080516 exon2 c.G450C p.E150D AGCCTCCTCTTCC . 131.0 30.0 91.0 0.0 . 22 GUK1 2987 ucsc.edu;bcgsc.ca 37 1 228336111 228336111 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GUK1 NM_001159390 exon7 c.A578G p.D193G TTAACGACAGCCT . 36.0 4.0 28.0 0.0 . 115 HAUS3 79441 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 2242302 2242302 + Missense_Mutation SNP T T G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HAUS3 NM_024511 exon2 c.A372C p.Q124H CATCAATTGACAT . 124.0 26.0 97.0 1.0 . 138 HELB 92797 ucsc.edu;bcgsc.ca 37 12 66725072 66725072 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HELB NM_033647 exon12 c.A2809G p.M937V GCCATTATGAAAA . 34.0 4.0 41.0 1.0 . 515 HELZ2 85441 ucsc.edu;bcgsc.ca 37 20 62198260 62198260 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001037335 exon7 c.C2451A p.T817T GGGCCAGGTGTTG . 23.0 4.0 34.0 0.0 . . HEPHL1 341208 ucsc.edu;bcgsc.ca 37 11 93778947 93778947 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HEPHL1 NM_001098672 exon2 c.A279G p.K93K CCCCAAACCTCCC . 47.0 4.0 59.0 1.0 . 71 HERC4 26091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 69726472 69726472 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HERC4 NM_022079 exon16 c.A1894G p.I632V AGTTGATATAATC . 100.0 17.0 120.0 0.0 . 659 HESX1 8820 broad.mit.edu;ucsc.edu 37 3 57233897 57233897 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HESX1 NM_003865 exon1 c.C50A p.S17X CAAGTTGAGGGTT . 71.0 9.0 71.0 0.0 . 227 HFE2 148738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 145414811 145414811 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HFE2 NM_213653 exon2 c.C30T p.P10P TAGTCCCAGGTCC . 80.0 22.0 60.0 0.0 . 91 HMCN1 83872 broad.mit.edu;bcgsc.ca 37 1 186088390 186088390 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HMCN1 NM_031935 exon78 c.G11916T p.A3972A GAATGCGGCTGGC . 100.0 8.0 72.0 0.0 . 113 HSD17B14 51171 ucsc.edu;bcgsc.ca 37 19 49316448 49316448 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HSD17B14 NM_016246 exon9 c.C797A p.P266H ATATCGGGGGCGT . 28.0 4.0 51.0 0.0 . 90 HSF2 3298 ucsc.edu;bcgsc.ca 37 6 122737443 122737443 + Splice_Site SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HSF2 NM_004506 exon5 c.531+2T>C . GAAAGGTAAGAAG . 43.0 4.0 38.0 1.0 . 90 HTRA3 94031 ucsc.edu;bcgsc.ca 37 4 8293156 8293156 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HTRA3 NM_053044 exon4 c.G768T p.V256V GTTTGTGGTGGCC . 51.0 6.0 76.0 0.0 . 91 IFI16 3428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158984635 158984635 + Missense_Mutation SNP G G C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . IFI16 NM_001206567 exon2 c.G165C p.K55N AGAAAAGTTCCGA . 270.0 63.0 258.0 0.0 . 91 IL17RD 54756 ucsc.edu;bcgsc.ca 37 3 57148813 57148813 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . IL17RD NM_017563 exon3 c.C217A p.H73N TCACATGCTTCCC . 31.0 5.0 31.0 0.0 . 500 IMPACT 55364 ucsc.edu;bcgsc.ca 37 18 22023067 22023067 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . IMPACT NM_018439 exon7 c.G545T p.R182L CAGACCGAAGAAG . 40.0 4.0 54.0 0.0 . 90 IPO9 55705 ucsc.edu;bcgsc.ca 37 1 201832722 201832722 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . IPO9 NM_018085 exon14 c.A1615G p.R539G GCAGTGAGAGCCA . 42.0 5.0 50.0 0.0 . 228 IRX1 79192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 3600204 3600204 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . IRX1 NM_024337 exon2 c.C1142A p.A381E TCCTCGCACAGGG . 98.0 27.0 74.0 0.0 . 228 ITPR3 3710 ucsc.edu;bcgsc.ca 37 6 33631612 33631612 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ITPR3 NM_002224 exon11 c.A1103G p.E368G TCTTTGAGCTGGA . 31.0 4.0 45.0 0.0 . 1085 KALRN 8997 ucsc.edu;bcgsc.ca 37 3 124418823 124418823 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KALRN NM_001024660 exon56 c.C7939A p.P2647T AGTAACCCCTGGG . 45.0 6.0 44.0 0.0 . 738 KCNA10 3744 broad.mit.edu;bcgsc.ca 37 1 111060014 111060014 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KCNA10 NM_005549 exon1 c.C1396A p.R466R TCTCCCGGTGGTA . 187.0 8.0 157.0 1.0 . 156 KDM2A 22992 ucsc.edu;bcgsc.ca 37 11 66975111 66975111 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KDM2A NM_012308 exon6 c.C438A p.L146L CAGCCTCGAGTTT . 41.0 4.0 51.0 0.0 . 661 KDM5B 10765 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 202710671 202710671 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KDM5B NM_006618 exon19 c.G2769A p.V923V TTGCTGCACCTCT . 46.0 10.0 44.0 0.0 . 273 KIAA0368 23392 ucsc.edu;bcgsc.ca 37 9 114195630 114195630 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KIAA0368 NM_001080398 exon9 c.T1265C p.F422S TCTATGAATTTCA . 42.0 4.0 29.0 0.0 . 68 KIAA1551 55196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 32135645 32135645 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 C12orf35,NS,carcinoma,-1 . NM_018169 exon4 c.G1756A p.A586T CTTCTCGCTTTGC . 51.0 9.0 51.0 0.0 . . KIFC1 3833 ucsc.edu;bcgsc.ca 37 6 33371612 33371612 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KIFC1 NM_002263 exon6 c.T462C p.R154R GTGCCGTGAGAGG . 43.0 4.0 42.0 0.0 . 90 KLC4 89953 ucsc.edu;bcgsc.ca 37 6 43033408 43033408 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KLC4 NM_201523 exon4 c.T594C p.P198P CTTTCCTAATGAG . 41.0 4.0 31.0 0.0 . 94 KLK1 3816 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51323553 51323553 + Missense_Mutation SNP C C G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . KLK1 NM_002257 exon3 c.G353C p.S118T TCGTGGCTGTAGT . 121.0 17.0 108.0 1.0 . 226 LCN6 158062 ucsc.edu;bcgsc.ca 37 9 139641977 139641977 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LCN6 NM_198946 exon2 c.G129T p.R43R CTTTTCCCGGGAG . 39.0 4.0 33.0 0.0 . 90 LHX9 56956 ucsc.edu;bcgsc.ca 37 1 197890497 197890497 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LHX9 NM_020204 exon3 c.G441T p.M147I GGTCATGCGCGCC . 48.0 5.0 37.0 0.0 . 91 LNX2 222484 ucsc.edu;bcgsc.ca 37 13 28124470 28124470 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LNX2 NM_153371 exon9 c.A1937G p.K646R ACTCACTTTAATC . 43.0 4.0 33.0 0.0 . 228 LONRF3 79836 ucsc.edu;bcgsc.ca 37 X 118148310 118148310 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LONRF3 NM_001031855 exon10 c.C2115A p.A705A AGACGCCGATCCT . 46.0 4.0 73.0 0.0 . 289 LRCH4 4034 ucsc.edu;bcgsc.ca 37 7 100175837 100175837 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LRCH4 NM_002319 exon7 c.T893C p.L298P GAGTCCAGCCCAC . 44.0 4.0 53.0 0.0 . 136 LRMP 4033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 25232338 25232338 + Nonsense_Mutation SNP T T A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LRMP NM_001204126 exon6 c.T78A p.Y26X GGAATATTCCTCA . 123.0 22.0 109.0 0.0 . 228 LRRC30 339291 ucsc.edu;bcgsc.ca 37 18 7231329 7231329 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LRRC30 NM_001105581 exon1 c.G193T p.D65Y ATCCCCGACTTTC . 40.0 4.0 44.0 0.0 . 24 LRRC7 57554 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 70501869 70501869 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LRRC7 NM_020794 exon17 c.C1947T p.T649T TGAGACCCCTCTG . 75.0 9.0 71.0 0.0 . 163 LRRTM3 347731 ucsc.edu;bcgsc.ca 37 10 68687800 68687800 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . LRRTM3 NM_178011 exon2 c.C1126A p.P376T GCTCTCCCAAAGC . 35.0 4.0 46.0 0.0 . 93 MAPKAPK5 8550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 112308091 112308091 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MAPKAPK5 NM_139078 exon6 c.G410A p.R137Q CTCTGCGGCACTG . 151.0 27.0 149.0 0.0 . 1215 MARCO 8685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 119739211 119739211 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MARCO NM_006770 exon10 c.C880T p.P294S GGTTTTCCTGGAG . 89.0 27.0 84.0 0.0 . 95 METTL2B 55798 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 128119304 128119304 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . METTL2B NM_018396 exon3 c.G295A p.E99K TTTACCGAATTCC . 250.0 41.0 238.0 0.0 . 23 MLF2 8079 ucsc.edu;bcgsc.ca 37 12 6859046 6859046 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MLF2 NM_005439 exon7 c.A527G p.E176G CGCTCCTCCTGGT . 31.0 5.0 29.0 0.0 . 153 MLPH 79083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 238434305 238434305 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MLPH NM_001042467 exon7 c.A737T p.E246V TGGAGGAGGCTGA . 52.0 14.0 40.0 0.0 . 91 MPHOSPH10 10199 ucsc.edu;bcgsc.ca 37 2 71366928 71366928 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MPHOSPH10 NM_005791 exon6 c.C1244A p.P415H TAGCACCTGTGAT . 43.0 4.0 36.0 0.0 . 93 MPP3 4356 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 41879127 41879127 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MPP3 NM_001932 exon20 c.T1700C p.V567A AAGACCACTTTGA . 20.0 5.0 25.0 0.0 . 91 MRPS25 64432 ucsc.edu;bcgsc.ca 37 3 15094002 15094002 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MRPS25 NM_022497 exon4 c.C468A p.P156P CTCCTTGGGTAAT . 48.0 4.0 73.0 0.0 . 90 MTG1 92170 ucsc.edu;bcgsc.ca 37 10 135211954 135211954 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MTG1 NM_138384 exon4 c.T298C p.L100L CAACACTTAGAAG . 42.0 5.0 40.0 0.0 . 91 MUC16 94025 ucsc.edu;bcgsc.ca 37 19 9048403 9048403 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MUC16 NM_024690 exon5 c.T33228C p.S11076S CCCATGACTGGTG . 48.0 4.0 78.0 0.0 . 566 MYH10 4628 ucsc.edu;bcgsc.ca 37 17 8381680 8381680 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MYH10 NM_001256012 exon41 c.A5682G p.R1894R CGCGTGTCGACGC . 47.0 4.0 61.0 0.0 . 92 MYO16 23026 broad.mit.edu;mdanderson.org 37 13 109507803 109507803 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MYO16 NM_001198950 exon11 c.C1261T p.P421S CTAATGCCTCCTG . 56.0 11.0 57.0 2.0 . 142 MYO3B 140469 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 171358299 171358299 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MYO3B NM_138995 exon28 c.G3294T p.W1098C AGCCTGGAGAGGA . 38.0 14.0 48.0 0.0 . 530 MYT1 4661 ucsc.edu;bcgsc.ca 37 20 62839474 62839474 + Missense_Mutation SNP C C A rs200028860 alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MYT1 NM_004535 exon7 c.C925A p.P309T GCAGCTCCTGATG . 27.0 6.0 21.0 0.0 C|1.000;T|0.000 704 NBR1 4077 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 41347052 41347052 + Silent SNP T T G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NBR1 NM_031862 exon14 c.T1746G p.P582P CACCCCTGTGGGT . 117.0 16.0 102.0 0.0 . 130 NCOR2 9612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 124835268 124835268 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NCOR2 NM_006312 exon30 c.G3709A p.V1237I ACAGGACGTCAGC . 32.0 10.0 14.0 0.0 . 229 NEMF 9147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 50269987 50269987 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NEMF NM_004713 exon20 c.A1883G p.E628G AAATATTCTCCAG . 105.0 32.0 105.0 0.0 . 90 NLRC5 84166 ucsc.edu;bcgsc.ca 37 16 57075465 57075465 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NLRC5 NM_032206 exon17 c.A3008G p.H1003R GCTGCCACCTCGG . 35.0 4.0 33.0 0.0 . 159 NPAT 4863 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108032148 108032148 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NPAT NM_002519 exon17 c.C3665T p.S1222L CCTACTGAAAGTA . 250.0 42.0 285.0 1.0 . 117 NPHP3 27031 ucsc.edu;bcgsc.ca 37 3 132418879 132418879 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NPHP3 NM_153240 exon12 c.T1770C p.S590S CAGAGCAGAGACT . 41.0 4.0 32.0 0.0 . 91 NPR1 4881 ucsc.edu;bcgsc.ca 37 1 153660156 153660156 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NPR1 NM_000906 exon14 c.T2139C p.P713P ACCCCCTGTGCGG . 60.0 4.0 29.0 0.0 . 393 NR3C2 4306 ucsc.edu;bcgsc.ca 37 4 149115938 149115938 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NR3C2 NM_001166104 exon4 c.G1973T p.C658F AGTCTGCAAGCAG . 32.0 5.0 37.0 0.0 . 154 NTN4 59277 ucsc.edu;bcgsc.ca 37 12 96181034 96181034 + Silent SNP G G A rs138865446 byfrequency TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NTN4 NM_021229 exon2 c.C268T p.L90L ATGGCAGGTGAGC . 43.0 4.0 36.0 0.0 G|1.000;A|0.000 92 OAS2 4939 ucsc.edu;bcgsc.ca 37 12 113433226 113433226 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . OAS2 NM_002535 exon3 c.C574A p.R192S GACAACCGTCCTG . 41.0 4.0 48.0 0.0 . 91 OSBPL8 114882 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 76765334 76765334 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . OSBPL8 NM_020841 exon19 c.A1948G p.T650A TATCAGTCTTTTT . 65.0 12.0 54.0 0.0 . 69 OTOGL 283310 ucsc.edu;bcgsc.ca 37 12 80655780 80655780 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_173591 exon18 c.C1894A p.Q632K ACACCACAACTTC . 50.0 6.0 34.0 0.0 . . PARP4 143 ucsc.edu;bcgsc.ca 37 13 25026551 25026551 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PARP4 NM_006437 exon24 c.G3007T p.G1003C CGATACCGCAGGC . 45.0 4.0 39.0 0.0 . 94 PASD1 139135 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 150839639 150839639 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PASD1 NM_173493 exon12 c.G1201T p.A401S CAGAATGCATTGG . 109.0 21.0 94.0 0.0 . 133 PCDH10 57575 ucsc.edu;bcgsc.ca 37 4 134071608 134071608 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PCDH10 NM_032961 exon1 c.C313A p.L105M CTGGAGCTGTTCC . 36.0 4.0 31.0 0.0 . 92 PCDHGA8 9708 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140772531 140772531 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_014004 exon1 c.G151T p.D51Y TCCAAGGACCTGG . 51.0 8.0 42.0 0.0 . . PCSK4 54760 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 1484037 1484037 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PCSK4 NM_017573 exon9 c.G1158A p.A386A CTCCAGCGCTAGG . 33.0 11.0 28.0 0.0 . 90 PDE10A 10846 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 165749696 165749696 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PDE10A NM_001130690 exon21 c.G2183T p.G728V TAGAACCCAAGCT . 37.0 10.0 21.0 0.0 . 519 PHKB 5257 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 47533690 47533690 + Missense_Mutation SNP C C G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PHKB NM_000293 exon3 c.C190G p.Q64E CTGTATCAAAGTC . 23.0 7.0 32.0 0.0 . 154 PIGZ 80235 ucsc.edu;bcgsc.ca 37 3 196678748 196678748 + Missense_Mutation SNP G G T rs201038840 alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PIGZ NM_025163 exon2 c.C155A p.P52Q GTCTGCGGAAGGA . 44.0 4.0 45.0 0.0 G|0.999;A|0.000 93 PLCE1 51196 ucsc.edu;bcgsc.ca 37 10 95791057 95791057 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PLCE1 NM_016341 exon2 c.A254G p.N85S ATGAGAACAGTAA . 45.0 4.0 46.0 0.0 . 229 PLEK 5341 ucsc.edu;bcgsc.ca 37 2 68607905 68607905 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PLEK NM_002664 exon3 c.A249G p.A83A CCAGGCAGCCTTC . 54.0 5.0 39.0 0.0 . 91 PLXNA1 5361 ucsc.edu;bcgsc.ca 37 3 126746843 126746843 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PLXNA1 NM_032242 exon23 c.G4423A p.G1475S GAGAAGGGCCCCA . 37.0 4.0 52.0 0.0 . 93 POLK 51426 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 74892708 74892708 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . POLK NM_016218 exon13 c.T2190C p.S730S TTCTAGTCTCCCA . 44.0 7.0 36.0 0.0 . 229 POLR2A 5430 ucsc.edu;bcgsc.ca 37 17 7416382 7416382 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . POLR2A NM_000937 exon29 c.A4799T p.Y1600F CTGCCTACGAGCC . 57.0 5.0 77.0 0.0 . 91 PPL 5493 ucsc.edu;bcgsc.ca 37 16 4945347 4945347 + Missense_Mutation SNP T T A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PPL NM_002705 exon11 c.A1157T p.Q386L ACCTGCTGGCCTC . 26.0 4.0 34.0 0.0 . 95 PPP1CA 5499 ucsc.edu;bcgsc.ca 37 11 67166297 67166297 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PPP1CA NM_001008709 exon6 c.A811G p.K271E GCCGCTTGGCAAA . 20.0 4.0 17.0 0.0 . 659 PPP1R15A 23645 ucsc.edu;bcgsc.ca 37 19 49379178 49379178 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PPP1R15A NM_014330 exon3 c.G1973A p.R658H CTTCCCGCTCGTC . 56.0 9.0 64.0 0.0 . 226 PRDM16 63976 ucsc.edu;bcgsc.ca 37 1 3350306 3350306 + Silent SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PRDM16 NM_022114 exon17 c.G3762A p.L1254L TTCTCTGGACGCT . 42.0 4.0 29.0 0.0 . 660 PRKCG 5582 ucsc.edu;bcgsc.ca 37 19 54403529 54403529 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PRKCG NM_002739 exon12 c.T1324C p.L442L GGAGACTTGATGT . 32.0 5.0 29.0 1.0 . 1367 PRPS2 5634 broad.mit.edu;bcgsc.ca 37 X 12838909 12838909 + Missense_Mutation SNP G G C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PRPS2 NM_001039091 exon6 c.G860C p.C287S AACACTGCACCAA . 50.0 7.0 52.0 0.0 . 130 PRRT2 112476 ucsc.edu;bcgsc.ca 37 16 29825202 29825202 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PRRT2 NM_001256442 exon2 c.G827T p.C276F TGTCCTGCTTCTG . 40.0 4.0 44.0 0.0 . 68 PSD3 23362 ucsc.edu;bcgsc.ca 37 8 18432732 18432732 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PSD3 NM_015310 exon13 c.C2545A p.H849N ATGCGTGGTGCAC . 60.0 5.0 69.0 0.0 . 93 RAB34 83871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27041897 27041897 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RAB34 NM_001144943 exon10 c.T797C p.F266S CGGAAGAAGAATT . 41.0 12.0 26.0 0.0 . 227 RAPGEF6 51735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 130841171 130841171 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RAPGEF6 NM_001164387 exon10 c.T987A p.S329R TGGATGACTGATT . 114.0 20.0 70.0 0.0 . 661 RASAL2 9462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 178420786 178420786 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RASAL2 NM_170692 exon10 c.G1708A p.D570N CTGATAGACCATC . 54.0 19.0 66.0 0.0 . 155 REV1 51455 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 100019252 100019253 + Frame_Shift_Del DEL AG AG - novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . REV1 NM_016316 exon21 c.3395_3396del p.1132_1132del AGAAGCAGAGAGT . 64.0 21.0 32.0 0.0 . 92 REV3L 5980 ucsc.edu;bcgsc.ca 37 6 111709275 111709275 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . REV3L NM_002912 exon8 c.G876T p.V292V TGCTGGCACAAAC . 41.0 4.0 38.0 0.0 . 294 RIC8B 55188 ucsc.edu;bcgsc.ca 37 12 107254187 107254187 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RIC8B NM_018157 exon8 c.C1448A p.P483Q CAAAACCAAAGTA . 39.0 4.0 53.0 0.0 . 91 RIMS4 140730 ucsc.edu;bcgsc.ca 37 20 43384815 43384815 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RIMS4 NM_001205317 exon6 c.C773T p.S258F TCGAGGGACAACT . 44.0 6.0 33.0 0.0 . 94 RIN1 9610 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66101485 66101485 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RIN1 NM_004292 exon7 c.T1496C p.L499P TGCAGCAGCTTCT . 57.0 9.0 46.0 0.0 . 710 RLIM 51132 broad.mit.edu;bcgsc.ca 37 X 73812528 73812528 + Frame_Shift_Del DEL G G - novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RLIM NM_183353 exon5 c.622delC p.Q208fs TCCTCTGACCTCT . 68.0 9.0 73.0 0.0 . 228 RNF123 63891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49738928 49738928 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RNF123 NM_022064 exon16 c.G1282T p.D428Y AGCTTCGACGTGC . 37.0 12.0 32.0 0.0 . 584 RPGR 6103 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 38144823 38144823 + Missense_Mutation SNP A A C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RPGR NM_001034853 exon15 c.T3429G p.N1143K TAATACATTATTC . 176.0 40.0 181.0 1.0 . 131 RSF1 51773 ucsc.edu;bcgsc.ca 37 11 77378439 77378439 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RSF1 NM_016578 exon16 c.A3849G p.E1283E ATCTGCTTCTGAA . 42.0 4.0 41.0 0.0 . 93 RTTN 25914 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 67871371 67871371 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RTTN NM_173630 exon3 c.T348C p.P116P TTCCGAAGGAAGA . 85.0 13.0 97.0 1.0 . 141 SEC23A 10484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 39524374 39524374 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SEC23A NM_006364 exon14 c.G1632T p.R544S CAGCCACCTAAGC . 96.0 21.0 83.0 0.0 . 95 SEMA3E 9723 ucsc.edu;bcgsc.ca 37 7 83026017 83026017 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SEMA3E NM_012431 exon12 c.A1395G p.T465T GTAAATTGTGATT . 49.0 4.0 36.0 0.0 . 93 SEMA3F 6405 ucsc.edu;bcgsc.ca 37 3 50223132 50223132 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SEMA3F NM_004186 exon15 c.T1579C p.S527P ATCTCTTCTAAGA . 45.0 4.0 45.0 0.0 . 279 SEPHS1 22929 ucsc.edu;bcgsc.ca 37 10 13371747 13371747 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SEPHS1 NM_001195604 exon6 c.A602G p.K201R AGGGGTTTTGTCA . 40.0 5.0 37.0 0.0 . 116 SERPINA10 51156 ucsc.edu;bcgsc.ca 37 14 94752572 94752572 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SERPINA10 NM_001100607 exon4 c.A1016G p.K339R TTGAACTTCGGAA . 48.0 8.0 36.0 0.0 . 228 SHCBP1 79801 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 46615855 46615855 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SHCBP1 NM_024745 exon13 c.C1805T p.T602I GGGTCAGTTCTTG . 96.0 23.0 110.0 1.0 . 154 SHD 56961 ucsc.edu;bcgsc.ca 37 19 4280289 4280289 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SHD NM_020209 exon1 c.C229A p.R77R AAGCACCGGCTCA . 42.0 4.0 35.0 0.0 . 90 SLC38A2 54407 ucsc.edu;bcgsc.ca 37 12 46756885 46756885 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SLC38A2 NM_018976 exon13 c.G1098T p.L366F AGTTCCCAAGATA . 40.0 5.0 47.0 0.0 . 226 SLC6A9 6536 ucsc.edu;bcgsc.ca 37 1 44466893 44466893 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SLC6A9 NM_201649 exon10 c.T1497C p.Y499Y GGTCACATAGGTC . 44.0 4.0 52.0 1.0 . 90 SMARCA4 6597 ucsc.edu;bcgsc.ca 37 19 11118666 11118666 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SMARCA4 NM_003072 exon14 c.A2090G p.D697G GCGATGACGTCTC . 45.0 4.0 43.0 0.0 . 1523 SNX14 57231 ucsc.edu;bcgsc.ca 37 6 86303303 86303303 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SNX14 NM_153816 exon1 c.T134C p.L45P CTGTTAAGAAGCA . 45.0 4.0 34.0 0.0 . 226 SPG11 80208 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 44943731 44943731 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SPG11 NM_025137 exon6 c.G1414T p.V472L TGTCTACAGGAAT . 42.0 8.0 50.0 0.0 . 95 SRM 6723 ucsc.edu;bcgsc.ca 37 1 11118901 11118901 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SRM NM_003132 exon3 c.A337G p.K113E GGTGCTTCACCAC . 37.0 4.0 36.0 0.0 . 90 ST8SIA1 6489 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 22486954 22486954 + Missense_Mutation SNP G G C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ST8SIA1 NM_003034 exon1 c.C213G p.N71K GGTCTGGTTCCTC . 27.0 9.0 21.0 0.0 . 93 SULF2 55959 ucsc.edu;bcgsc.ca 37 20 46307514 46307514 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SULF2 NM_001161841 exon8 c.C1099A p.P367T TGGTGGGGGCCAG . 49.0 5.0 52.0 0.0 . 293 SYNE1 23345 ucsc.edu;bcgsc.ca 37 6 152683374 152683374 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SYNE1 NM_033071 exon64 c.C10251A p.A3417A CAGGTTGGCTTCC . 40.0 4.0 53.0 0.0 . 607 TENM1 10178 broad.mit.edu;ucsc.edu 37 X 123695669 123695669 + Splice_Site SNP T T A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001163278 exon15 c.2288-2A>T . GCCATCTGAAAAG . 47.0 5.0 25.0 0.0 . . THSD7B 80731 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 137988754 137988754 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . THSD7B . . . . AAAAACTCAGATG . 92.0 16.0 84.0 0.0 . 75 TMEM2 23670 ucsc.edu;bcgsc.ca 37 9 74360144 74360144 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TMEM2 NM_001135820 exon4 c.A824G p.D275G GCCGTGTCTTGGT . 38.0 4.0 48.0 0.0 . 92 TMEM232 642987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 109941886 109941886 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001039763 exon9 c.C1005A p.S335R CATAATGCTTGAA . 143.0 22.0 129.0 0.0 . . TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24802369 24802369 + Silent SNP G G A rs113829020 byfrequency;alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TNRC6A NM_014494 exon6 c.G2406A p.G802G CCAGGGGGGGTGG . 24.0 12.0 27.0 0.0 G|0.997;C|0.003 92 TPM2 7169 ucsc.edu;bcgsc.ca 37 9 35685294 35685294 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TPM2 NM_213674 exon5 c.T535C p.S179P CCTCCGAGCGCTC . 32.0 4.0 27.0 0.0 . 515 TRAIP 10293 broad.mit.edu;bcgsc.ca 37 3 49869470 49869470 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TRAIP NM_005879 exon11 c.C916T p.R306C GCCGGCGGAGCTT . 40.0 9.0 33.0 0.0 . 849 TRAM1 23471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 71499196 71499196 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TRAM1 NM_014294 exon8 c.A680G p.Y227C ACAAAATAATGTA . 114.0 22.0 102.0 0.0 . 227 TSC2 7249 ucsc.edu;bcgsc.ca 37 16 2112539 2112539 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TSC2 NM_001114382 exon13 c.C1299T p.S433S GCAGTCCATCCAC . 42.0 4.0 40.0 0.0 . 1908 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179407524 179407524 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TTN NM_001267550 exon348 c.G97057A p.V32353I CTGTGACACGCTC . 122.0 20.0 104.0 0.0 . 636 UBASH3B 84959 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 122659905 122659905 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . UBASH3B NM_032873 exon6 c.G869A p.S290N AGACCAGCACCAG . 48.0 9.0 32.0 0.0 . 68 UCN2 90226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 48600437 48600437 + Nonsense_Mutation SNP G G A rs149022309 TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . UCN2 NM_033199 exon2 c.C121T p.R41X CAGGTCGGGGAGT . 71.0 17.0 74.0 0.0 G|1.000;A|0.000 68 USP12 219333 ucsc.edu;bcgsc.ca 37 13 27643523 27643523 + Splice_Site SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . USP12 NM_182488 exon10 c.1012-2A>G . ATTTTCTGTGAGG . 46.0 4.0 57.0 0.0 . 522 USP46 64854 ucsc.edu;bcgsc.ca 37 4 53494294 53494294 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . USP46 NM_022832 exon3 c.G154A p.A52T ACAATGCCTGAAG . 43.0 4.0 56.0 0.0 . 637 UTRN 7402 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 6 144783916 144783916 + Nonsense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . UTRN NM_007124 exon22 c.C2980T p.Q994X GATGTGCAAGGAA . 86.0 22.0 81.0 0.0 . 95 VWA3A 146177 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 22144300 22144300 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . VWA3A NM_173615 exon20 c.A1952G p.E651G TGGGCGAGCCAAA . 27.0 6.0 24.0 1.0 . 1 WDFY4 57705 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 49983837 49983837 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . WDFY4 NM_020945 exon15 c.A2849G p.N950S GAGGCAACCCTGG . 64.0 7.0 40.0 0.0 . 22 WDR7 23335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 54362254 54362254 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . WDR7 NM_052834 exon11 c.A1182G p.I394M AATTATAGATCAG . 130.0 29.0 130.0 0.0 . 93 ZAN 7455 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100349904 100349904 + RNA SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZAN . . . . CCCACCATCCCCA . 288.0 43.0 338.0 1.0 . 142 ZCCHC14 23174 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 87446754 87446754 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZCCHC14 NM_015144 exon11 c.G1240A p.G414S AACTGCCTTCCCG . 30.0 7.0 23.0 0.0 . 154 ZIC5 85416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 100617641 100617641 + Missense_Mutation SNP G G A rs146570814 TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZIC5 NM_033132 exon2 c.C1982T p.T661M TGTATCGTCCGCA . 63.0 13.0 60.0 0.0 G|1.000;A|0.000 90 ZNF233 353355 ucsc.edu;bcgsc.ca 37 19 44777921 44777921 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZNF233 NM_001207005 exon5 c.T1108C p.C370R AAGTTGTGTACAT . 44.0 4.0 48.0 0.0 . 92 ZNF473 25888 ucsc.edu;bcgsc.ca 37 19 50550100 50550100 + Silent SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZNF473 NM_015428 exon5 c.T2400C p.N800N AGCAAATCTAACA . 34.0 4.0 33.0 0.0 . 91 ZNF532 55205 ucsc.edu;bcgsc.ca 37 18 56646394 56646394 + Silent SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZNF532 NM_018181 exon9 c.C3258A p.A1086A GTACGCCTGCTCG . 47.0 4.0 60.0 0.0 . 154 ZNF578 147660 ucsc.edu;bcgsc.ca 37 19 53015353 53015353 + Silent SNP T T A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_001099694 exon6 c.T1719A p.G573G GTGTGGTAAGGCT . 40.0 4.0 39.0 0.0 . . ZNF75D 7626 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 134426310 134426310 + Missense_Mutation SNP T T G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ZNF75D NM_007131 exon3 c.A501C p.Q167H CATTGGTTGGGGC . 74.0 10.0 87.0 1.0 . 130