Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADRB2	154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148207094	148207094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ADRB2	NM_000024	exon1	c.G700C	p.D234H	AAGATTGACAAAT	.	106.0	40.0	80.0	0.0	.	523
AMOT	154796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	112022293	112022293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	AMOT	NM_001113490	exon10	c.G3089C	p.S1030T	GCTGGACTTGCAG	.	252.0	43.0	259.0	0.0	.	131
ANP32C	23520	ucsc.edu;mdanderson.org	37	4	165118830	165118830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ANP32C	NM_012403	exon1	c.C34T	p.R12W	TGTTCCGCAGCTC	.	113.0	37.0	99.0	2.0	.	90
ARHGEF3	50650	broad.mit.edu;ucsc.edu	37	3	56835759	56835759	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARHGEF3	NM_019555	exon1	c.C68G	p.P23R	CTGGCCGGGGGTA	.	81.0	12.0	89.0	1.0	.	228
ARL5A	26225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152670806	152670806	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARL5A	NM_012097	exon3	c.A132G	p.T44T	AGGAGATGTATGT	.	196.0	48.0	195.0	0.0	.	227
ARR3	407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69501565	69501565	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARR3	NM_004312	exon17	c.C1116T	p.G372G	GAAAGGCGAGGAG	.	100.0	25.0	89.0	0.0	.	156
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42553255	42553255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ATP8A1	NM_006095	exon18	c.T1562C	p.V521A	GTGAAAACAAAAT	.	152.0	41.0	147.0	0.0	.	92
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102004068	102004068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BHLHB9	NM_001142530	exon2	c.G145A	p.G49R	AAGACAGGGTCTA	.	376.0	108.0	368.0	0.0	.	132
BMP1	649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22052004	22052004	+	Silent	SNP	G	G	A	rs199778498		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BMP1	NM_001199	exon11	c.G1344A	p.S448S	TCAATCGCCCAAC	.	120.0	51.0	131.0	0.0	G|0.999;A|0.000	155
BRIX1	55299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34925045	34925045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BRIX1	NM_018321	exon9	c.T757G	p.L253V	CCAACTTTATATG	.	33.0	7.0	24.0	0.0	.	90
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	121625734	121625734	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	C6orf170	NM_152730	exon7	c.T807C	p.N269N	AATATGATTTTCC	.	60.0	10.0	76.0	0.0	.	92
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	36960731	36960731	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CACNG2	NM_006078	exon4	c.C639T	p.R213R	CGTGGCGCGGGCC	.	22.0	10.0	20.0	0.0	.	90
CAPZB	832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19746233	19746233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CAPZB	NM_004930	exon2	c.G15C	p.Q5H	GTCCAGCTGCTGA	.	95.0	5.0	90.0	0.0	.	90
CCDC164	92749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26676331	26676331	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CCDC164	NM_145038	exon14	c.G1833A	p.E611E	AGAGGAGGAGACC	.	109.0	25.0	100.0	2.0	.	92
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123298712	123298712	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CDK5RAP2	NM_018249	exon7	c.A600G	p.S200S	CATCTCTGAAAGC	.	82.0	29.0	72.0	0.0	.	229
CEP85L	387119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	118832526	118832526	+	Missense_Mutation	SNP	G	G	A	rs138089888	byfrequency	TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001178035	exon6	c.C1201T	p.R401W	GAGCCCGTAATTC	.	115.0	30.0	93.0	0.0	G|1.000;A|0.000	.
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93499777	93499777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CHD2	NM_001271	exon16	c.T1898C	p.L633P	AAACTCTGATTGA	.	46.0	12.0	51.0	0.0	.	229
CHIC1	53344	hgsc.bcm.edu;broad.mit.edu	37	X	72783227	72783227	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CHIC1	NM_001039840	exon1	c.C107A	p.S36X	CGTCGTCGTCGGT	.	136.0	9.0	107.0	0.0	.	130
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	122216520	122216520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CLASP1	NM_001207051	exon13	c.G1210A	p.D404N	CATGGTCAAACTT	.	103.0	22.0	61.0	0.0	.	91
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238245049	238245049	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	COL6A3	NM_004369	exon40	c.T8694C	p.T2898T	TATAATAGTCACA	.	123.0	23.0	86.0	0.0	.	526
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56073609	56073609	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CTCFL	NM_001269041	exon10	c.G1989A	p.K663K	CTCTCACTTATCC	.	158.0	40.0	111.0	0.0	.	292
CUX1	1523	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	101877505	101877505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CUX1	NM_001202543	exon22	c.C3640T	p.R1214W	ATGAAACGGATGG	.	35.0	8.0	41.0	0.0	.	160
CXorf30	645090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	36319234	36319234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CXorf30	NM_001098843	exon8	c.A248T	p.K83M	TACTGAAGTTAAC	.	284.0	16.0	251.0	0.0	.	62
CXorf58	254158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23953337	23953337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CXorf58	NM_152761	exon7	c.C580A	p.P194T	GAGGCCCCTGCAT	.	26.0	8.0	37.0	0.0	.	130
DCHS1	8642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6655134	6655134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DCHS1	NM_003737	exon4	c.A2104G	p.T702A	CAGCTGTGCCTGG	.	125.0	36.0	107.0	1.0	.	73
DECR1	1666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91031397	91031397	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DECR1	NM_001359	exon4	c.T414C	p.P138P	ACATCCTAATGTA	.	106.0	37.0	78.0	0.0	.	90
DMD	1756	hgsc.bcm.edu;broad.mit.edu	37	X	31165436	31165436	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DMD	NM_004006	exon75	c.C10753T	p.Q3585X	CCAGCTGTTTATT	.	165.0	10.0	154.0	0.0	.	265
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13820597	13820597	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DNAH5	NM_001369	exon41	c.T6699C	p.A2233A	TAAACCAGCTTCT	.	116.0	26.0	76.0	0.0	.	182
DOK3	79930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176931755	176931755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DOK3	NM_024872	exon5	c.G802A	p.G268S	CGGAGCCGAACTT	.	135.0	28.0	101.0	0.0	.	226
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5633629	5633629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	EVC2	NM_147127	exon11	c.G1601A	p.R534K	TCATTTCTCTGGA	.	73.0	12.0	71.0	0.0	.	155
FADD	8772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049591	70049591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FADD	NM_003824	exon1	c.A26G	p.H9R	TGCTGCACTCGGT	.	56.0	10.0	53.0	0.0	.	660
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150948274	150948274	+	Silent	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FAT2	NM_001447	exon1	c.C219A	p.I73I	AGAGATGATCCGG	.	212.0	45.0	159.0	1.0	.	96
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	127686699	127686699	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FBN2	NM_001999	exon22	c.2675-2A>G	.	GCTGTCTGAAAAG	.	94.0	6.0	51.0	0.0	.	146
FHAD1	114827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15675645	15675645	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FHAD1	NM_052929	exon18	c.G2388C	p.E796D	GAAGGAGGTATGA	.	56.0	14.0	65.0	0.0	.	69
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56104976	56104976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FIZ1	NM_032836	exon3	c.G331A	p.V111I	CGCAGACCAGGCA	.	127.0	27.0	108.0	0.0	.	90
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153586830	153586830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FLNA	NM_001456	exon27	c.T4581A	p.D1527E	CTCTTCATCTCCA	.	164.0	29.0	154.0	0.0	.	599
GAS2L3	283431	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101017478	101017478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GAS2L3	NM_174942	exon10	c.G895T	p.V299F	AAAGGAGTTTCTA	.	67.0	14.0	77.0	1.0	.	227
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	102433403	102433403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GIN1	NM_017676	exon5	c.G722A	p.S241N	GGTGTACTTTCCG	.	127.0	7.0	91.0	0.0	.	92
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42262748	42262748	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GLI3	NM_000168	exon2	c.C105T	p.A35A	GCTGGAGGCAACG	.	81.0	23.0	96.0	0.0	.	1149
GOLT1B	51026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21665265	21665265	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GOLT1B	NM_016072	exon4	c.A333T	p.R111S	TAGAAGAGTGCCA	.	89.0	34.0	54.0	1.0	.	90
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106558	53106558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR173	NM_018969	exon2	c.G755A	p.G252E	GCCGTGGGCCCAT	.	49.0	10.0	40.0	0.0	.	130
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78426850	78426850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR174	NM_032553	exon1	c.C346G	p.R116G	GTGCGACGATTTT	.	491.0	124.0	445.0	0.0	.	130
GPR82	27197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41586979	41586979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR82	NM_080817	exon3	c.T700A	p.C234S	AGAACCTGTACGT	.	193.0	58.0	188.0	2.0	.	110
GRAMD2	196996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72455767	72455767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GRAMD2	NM_001012642	exon10	c.C796T	p.P266S	GCATGGGCCATGC	.	110.0	36.0	71.0	0.0	.	90
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	153085452	153085460	+	In_Frame_Del	DEL	GTGAGTGTT	GTGAGTGTT	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	GTGAGTGTT	GTGAGTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GRIA1	NM_001258021	exon11	c.1678_1686del	p.560_562del	ATTGGAGTGAGTG	.	379.0	34.0	271.0	0.0	.	96
HAGHL	84264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	777559	777559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	HAGHL	NM_032304	exon1	c.T50G	p.V17G	ACCTGGTCATCGA	.	130.0	27.0	95.0	0.0	.	90
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52863215	52863215	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ITIH4	NM_001166449	exon2	c.G171A	p.V57V	ATTGACCACTCGG	.	127.0	37.0	105.0	0.0	.	46
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	4693825	4693829	+	Frame_Shift_Del	DEL	TGTCG	TGTCG	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	TGTCG	TGTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ITPR1	NM_001099952	exon11	c.874_878del	p.292_293del	GACCCATGTCGGG	.	158.0	35.0	118.0	0.0	.	710
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39285579	39285579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KCNK16	NM_001135106	exon3	c.C478A	p.R160S	TGGGACGGTCCTC	.	103.0	30.0	66.0	0.0	.	229
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138640960	138640960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KIAA1244	NM_020340	exon28	c.C4595T	p.A1532V	AGCACGCTATTGG	.	182.0	61.0	168.0	0.0	.	228
KIF13B	23303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28950346	28950346	+	Silent	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KIF13B	NM_015254	exon37	c.G4374C	p.V1458V	TTGCGGCACGAAG	.	63.0	20.0	94.0	2.0	.	22
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53225247	53225247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KRT79	NM_175834	exon2	c.G641A	p.G214E	AGCCTCCCCCGCT	.	105.0	7.0	96.0	0.0	.	72
KRTAP5-7	440050	hgsc.bcm.edu;broad.mit.edu	37	11	71238736	71238762	+	In_Frame_Del	DEL	CTGCTGTTCCTCAGGCTGTGGGTCATC	CTGCTGTTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	CTGCTGTTCCTCAGGCTGTGGGTCATC	CTGCTGTTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KRTAP5-7	NM_001012503	exon1	c.390_416del	p.130_139del	GCCCTGCTGCTGT	.	183.0	23.0	160.0	0.0	.	68
LAMP5	24141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9510307	9510307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_012261	exon6	c.A683G	p.D228G	CAGTGGATGAGCG	.	153.0	25.0	105.0	0.0	.	.
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36983752	36983752	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LBP	NM_004139	exon5	c.G531A	p.L177L	GTGGCTGTTGAAC	.	102.0	39.0	92.0	0.0	.	91
LEPR	3953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	66102511	66102511	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LEPR	NM_002303	exon20	c.T3311A	p.F1104Y	GCCCATTCCCAGC	.	135.0	7.0	157.0	0.0	.	91
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55143640	55143640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LILRB1	NM_001081637	exon5	c.C613T	p.P205S	AACTCTCCCTATG	.	290.0	69.0	280.0	0.0	.	137
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889752	23889752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_019066	exon1	c.G3138T	p.M1046I	TTTCACCATCTCC	.	188.0	39.0	190.0	0.0	.	.
MICA	100507436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31378413	31378413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001177519	exon2	c.C164T	p.P55L	GTCAGCCCTTCCT	.	235.0	56.0	217.0	0.0	.	.
MIR211	406993	ucsc.edu;mdanderson.org	37	15	31357301	31357301	+	RNA	SNP	C	C	A	rs187960998	by1000genomes;alternate_allele	TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	.	.	.	.	CCTAGGCGAAGGA	.	62.0	23.0	46.0	0.0	C|0.999;T|0.000	.
MIR561	693146	ucsc.edu;mdanderson.org	37	2	189162265	189162265	+	RNA	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	.	.	.	.	CTTTGCCAGAGCT	.	106.0	43.0	79.0	0.0	.	.
MIR600HG	81571	ucsc.edu;mdanderson.org	37	9	125876416	125876416	+	RNA	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	.	.	.	.	CTGACAGGATCCG	.	76.0	19.0	73.0	0.0	.	.
MLL5	55904	broad.mit.edu;mdanderson.org	37	7	104741930	104741930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MLL5	NM_018682	exon15	c.G1781A	p.R594K	AAAAGAGAGAGAA	.	12.0	3.0	9.0	0.0	.	93
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108147461	108147461	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MYH15	NM_014981	exon28	c.G3640C	p.E1214Q	CGAGCTCAGCCAG	.	297.0	12.0	228.0	0.0	.	73
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	95161196	95161196	+	Nonsense_Mutation	SNP	G	G	A	rs199504349		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MYOF	NM_133337	exon12	c.C1096T	p.R366X	CAGCTCGGTAGAT	.	98.0	28.0	56.0	0.0	.	93
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	122.0	5.0	121.0	0.0	.	292
NETO2	81831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47117548	47117548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	NETO2	NM_018092	exon9	c.G1162C	p.G388R	GGAACCCGGTTTT	.	57.0	23.0	83.0	0.0	.	90
OPRM1	4988	broad.mit.edu;bcgsc.ca	37	6	154360342	154360342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	OPRM1	NM_001145279	exon2	c.A47T	p.D16V	CCTTGGATCGCTT	.	142.0	10.0	111.0	1.0	.	69
OVOL2	58495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	18005322	18005322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	OVOL2	NM_021220	exon4	c.C786G	p.H262Q	CTCCTGGTGTGCG	.	293.0	21.0	237.0	0.0	.	68
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	127255087	127255087	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PAX4	NM_006193	exon2	c.A183G	p.P61P	GCCCTTTGGCTCC	.	86.0	6.0	70.0	0.0	.	227
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56129002	56129002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDH15	NM_001142763	exon6	c.G367C	p.V123L	ACTGGACCTGCAC	.	76.0	22.0	89.0	0.0	.	193
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140203594	140203594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDHA5	NM_018908	exon1	c.G2234T	p.G745V	CGGTGGGGAGCTG	.	129.0	16.0	88.0	0.0	.	137
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140307840	140307840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDHAC1	NM_031882	exon1	c.G1363C	p.A455P	TTCGTTGCTGAAA	.	57.0	6.0	34.0	0.0	.	28
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57327699	57327699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PEG3	NM_001146184	exon9	c.A2111T	p.Q704L	ATTTTCTGATGCT	.	101.0	20.0	100.0	0.0	.	164
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54989780	54989780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PFKFB1	NM_001271804	exon2	c.G133A	p.V45M	TGATCACCATTGT	.	159.0	50.0	172.0	0.0	.	131
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110417294	110417294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PKHD1L1	NM_177531	exon16	c.C1604T	p.P535L	CCAGCCCATGTGT	.	99.0	24.0	97.0	0.0	.	145
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	110539189	110539189	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PKHD1L1	NM_177531	exon77	c.G12661T	p.G4221X	CTGGTTGGAAGAA	.	127.0	28.0	123.0	0.0	.	145
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96084287	96084287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PLCE1	NM_016341	exon31	c.C6683A	p.A2228E	AAGGTGCAGGAAA	.	56.0	24.0	59.0	0.0	.	229
PLEC	5339	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	144995161	144995161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PLEC	NM_201380	exon32	c.G9239A	p.R3080Q	AACTGCCGCAGCA	.	39.0	4.0	49.0	0.0	.	141
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46850460	46850460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PPP5C	NM_006247	exon1	c.A107G	p.N36S	AGGCCAATGACTA	.	53.0	9.0	37.0	0.0	.	227
PRDM9	56979	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	23527194	23527194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PRDM9	NM_020227	exon11	c.G1997A	p.C666Y	ATGTCTGCAGGGA	.	190.0	28.0	122.0	0.0	.	139
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27220730	27220730	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PRSS16	NM_005865	exon9	c.1150+2T>C	.	CTTCTGTAAGTGA	.	166.0	12.0	133.0	0.0	.	94
PSMD13	5719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	251919	251919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PSMD13	NM_175932	exon10	c.G1024C	p.V342L	CCCCGAGTGTTGG	.	196.0	10.0	124.0	0.0	.	515
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	67839340	67839340	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RANBP10	NM_020850	exon2	c.338delG	p.G113fs	TCTCTTCCTTTGC	.	91.0	33.0	65.0	0.0	.	227
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100994297	100994297	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RGS22	NM_015668	exon22	c.T3228C	p.I1076I	AGTTGTAATCTTC	.	95.0	31.0	83.0	0.0	.	140
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104930679	104930679	+	Silent	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RIMS2	NM_001100117	exon9	c.C2047A	p.R683R	ATACCGCGAATAC	.	121.0	25.0	121.0	0.0	.	279
RMDN1	51115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	87492510	87492511	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_016033	exon6	c.637_638insT	p.I213fs	ACCAAATACCCAT	.	111.0	34.0	112.0	0.0	.	.
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123782650	123782650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SBNO1	NM_001167856	exon30	c.A3914T	p.Y1305F	AATACATAATATG	.	138.0	42.0	100.0	0.0	.	292
SCG3	29106	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	51975586	51975586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCG3	NM_013243	exon4	c.G352A	p.D118N	CTGATCGATGATT	.	34.0	4.0	25.0	0.0	.	91
SCHIP1	29970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158991644	158991644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCHIP1	NM_014575	exon1	c.A35T	p.D12V	CGTGGGACTGTGA	.	121.0	33.0	103.0	1.0	.	92
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645342	38645342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCN5A	NM_001160160	exon12	c.G1751A	p.G584D	GCGTGGCCAGGAG	.	64.0	13.0	48.0	0.0	.	98
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	201399836	201399838	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SGOL2	NM_001160046	exon3	c.251_253del	p.84_85del	TGCAAAAAGAAGT	.	81.0	16.0	40.0	0.0	.	94
SLC27A6	28965	broad.mit.edu;bcgsc.ca	37	5	128365345	128365345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC27A6	NM_001017372	exon9	c.A1628G	p.E543G	TTTATGAACAAGT	.	102.0	5.0	70.0	1.0	.	90
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87235302	87235302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC7A13	NM_138817	exon2	c.C716T	p.P239L	CATTTGGGAATTG	.	87.0	22.0	63.0	0.0	.	90
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	135067806	135067806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC9A6	NM_006359	exon1	c.G145A	p.E49K	GGCGGAGAGGCTA	.	60.0	15.0	69.0	0.0	.	131
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144903985	144903985	+	Silent	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLITRK2	NM_001144005	exon5	c.C42A	p.A14A	CGTGGCCGGGATC	.	199.0	37.0	167.0	0.0	.	136
SPECC1	92521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	20109082	20109082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SPECC1	NM_001033553	exon4	c.A1720G	p.T574A	GAGCAGACGGCAG	.	66.0	21.0	63.0	0.0	.	639
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882436	228882436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SPHKAP	NM_030623	exon7	c.A3134C	p.K1045T	ATGATCTTGGCTG	.	98.0	24.0	84.0	0.0	.	167
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119563215	119563215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SRRM4	NM_194286	exon7	c.G545A	p.R182H	CTCACCGCCACCG	.	72.0	23.0	70.0	0.0	.	2
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156266720	156266720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SSR3	NM_007107	exon3	c.G333T	p.K111N	AGACATCTTTCTA	.	71.0	19.0	60.0	0.0	.	90
ST7-OT4	338069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116596768	116596768	+	RNA	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	.	.	.	.	TTGATCATATTTT	.	65.0	21.0	60.0	0.0	.	.
STAB2	55576	broad.mit.edu;bcgsc.ca	37	12	104060114	104060114	+	Missense_Mutation	SNP	G	G	A	rs147674384		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	STAB2	NM_017564	exon19	c.G2068A	p.A690T	TGTCCTGCTAACT	.	142.0	7.0	122.0	1.0	G|1.000;A|0.000	104
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	27024472	27024472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	STIM2	NM_001169118	exon13	c.T2119G	p.S707A	TCATGTTCCTCAG	.	118.0	23.0	103.0	0.0	.	91
TARP	0	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	38305036	38305036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001003806	exon2	c.T59C	p.L20P	TTGTCCAGTGACT	.	240.0	65.0	181.0	0.0	.	.
TAS1R1	80835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6635364	6635364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TAS1R1	NM_138697	exon3	c.G1172A	p.R391Q	CATACCGGGCTGT	.	104.0	30.0	117.0	1.0	.	516
TET3	200424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74275063	74275063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_144993	exon1	c.G1614C	p.R538S	CTCCAGGGACAGC	.	135.0	7.0	101.0	0.0	.	.
TG	7038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133953779	133953779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TG	NM_003235	exon26	c.T5225C	p.V1742A	CACAGGTTCAAGG	.	286.0	78.0	233.0	1.0	.	145
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	84208092	84208092	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TLE1	NM_005077	exon15	c.C1429T	p.Q477X	TGATCTGGCGAGC	.	154.0	56.0	129.0	0.0	.	92
TRAPPC8	22878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29419280	29419280	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TRAPPC8	NM_014939	exon27	c.A3978G	p.Q1326Q	CCTTTTTTGATGA	.	50.0	19.0	41.0	0.0	.	159
UBA1	7317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47072228	47072228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	UBA1	NM_153280	exon22	c.A2612G	p.E871G	GGGCAGAAAACTA	.	376.0	95.0	316.0	1.0	.	227
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70360887	70360889	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	UGT2B4	NM_021139	exon1	c.691_693del	p.231_231del	ATCCCACTTCTTC	.	99.0	15.0	105.0	0.0	.	92
USP1	7398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	62913095	62913095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	USP1	NM_001017415	exon7	c.A1333G	p.S445G	TGTGAAAGTTTAA	.	103.0	9.0	94.0	0.0	.	659
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6194392	6194392	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	USP42	NM_032172	exon15	c.C3207T	p.Y1069Y	CCTGTACGCTGCC	.	14.0	4.0	21.0	0.0	.	659
VEZT	55591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95676231	95676231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	VEZT	NM_017599	exon8	c.G1139T	p.G380V	CTCAAGGTCTACC	.	148.0	32.0	107.0	1.0	.	23
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43480544	43480544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	YIPF3	NM_015388	exon7	c.C735G	p.F245L	GAGGTAGAAGAGG	.	190.0	37.0	155.0	0.0	.	90
ZAR1L	646799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32878064	32878064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZAR1L	NM_001136571	exon4	c.C918G	p.D306E	TCTCTTGTCTTTG	.	89.0	7.0	108.0	0.0	.	68
ZCCHC2	54877	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	60225965	60225965	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZCCHC2	NM_017742	exon7	c.T1454G	p.L485X	AACACTTAAAAGA	.	133.0	46.0	131.0	2.0	.	432
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147128637	147128637	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZIC1	NM_003412	exon1	c.C738T	p.F246F	AACTTTCAGCACC	.	184.0	46.0	153.0	0.0	.	91
ZMAT4	79698	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	40532341	40532341	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZMAT4	NM_024645	exon5	c.G459A	p.W153X	ATTAAACCAGGCT	.	128.0	27.0	104.0	1.0	.	92
ZNF141	7700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	366775	366775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF141	NM_003441	exon4	c.T549A	p.F183L	GAAGTTTTCACAC	.	85.0	20.0	64.0	0.0	.	90
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52090484	52090484	+	Silent	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF175	NM_007147	exon5	c.T900A	p.I300I	GAGAATTCATAGT	.	131.0	33.0	102.0	0.0	.	90
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21240807	21240807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF430	NM_025189	exon5	c.A1693G	p.R565G	TACTGGAGAGAAA	.	19.0	11.0	25.0	0.0	.	516
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11892231	11892231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF441	NM_152355	exon4	c.A1592G	p.Y531C	GACCCTATAAGTG	.	42.0	10.0	38.0	0.0	.	69
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31038889	31038889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF536	NM_014717	exon4	c.G2363A	p.G788D	ATGCCGGCACGCA	.	79.0	14.0	85.0	0.0	.	144