Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA2 20 ucsc.edu;bcgsc.ca 37 9 139911383 139911383 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCA2 NM_212533 exon19 c.C2837T p.A946V TGCACAGCCTCAA . 30.0 4.0 49.0 0.0 . 90 ABCA3 21 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2339468 2339468 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCA3 NM_001089 exon20 c.G2667A p.E889E CTCCTCCTCGATG . 67.0 16.0 110.0 0.0 . 1015 ABCA9 10350 hgsc.bcm.edu;bcgsc.ca 37 17 67017907 67017907 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCA9 NM_080283 exon18 c.G2377A p.G793R ATTTTCCTTCTAA . 57.0 4.0 62.0 0.0 . 95 ABCC2 1244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 101567952 101567952 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCC2 NM_000392 exon13 c.G1781A p.S594N CCCTGAGCATGCT . 115.0 39.0 160.0 0.0 . 91 ABCC9 10060 hgsc.bcm.edu;bcgsc.ca 37 12 21962812 21962812 + Missense_Mutation SNP A A G rs144125604 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCC9 NM_005691 exon35 c.T4289C p.M1430T TTGACCATATTCT . 45.0 4.0 60.0 0.0 A|1.000;G|0.000 96 ADAM2 2515 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 39678655 39678655 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAM2 NM_001464 exon6 c.A379G p.I127V GTTCTATTCCATA . 99.0 5.0 163.0 0.0 . 227 ADAM8 101 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 135087474 135087474 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAM8 NM_001164489 exon4 c.C287T p.T96M TGCTCCGTCACCT . 62.0 17.0 101.0 0.0 . 90 ADCK4 79934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41206291 41206291 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADCK4 NM_024876 exon11 c.G959T p.R320L AGCACCCGTGTCG . 77.0 29.0 109.0 0.0 . 319 ADCY10 55811 broad.mit.edu;bcgsc.ca 37 1 167849366 167849366 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADCY10 NM_018417 exon11 c.A1203G p.R401R CTCGTGTCTCACA . 136.0 6.0 176.0 1.0 . 493 AFF3 3899 hgsc.bcm.edu;bcgsc.ca 37 2 100185316 100185316 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AFF3 NM_001025108 exon18 c.A3055G p.M1019V TCACCATTGCATC . 121.0 6.0 125.0 0.0 . 230 AGXT 189 hgsc.bcm.edu;bcgsc.ca 37 2 241813425 241813425 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AGXT NM_000030 exon6 c.A626G p.K209R CCCAGAAGGCCCT . 52.0 4.0 74.0 0.0 . 90 ALDH7A1 501 ucsc.edu;bcgsc.ca 37 5 125887798 125887798 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALDH7A1 NM_001182 exon14 c.C1232A p.P411Q ATTGTCGGTTCTA . 65.0 6.0 90.0 1.0 . 227 ALG13 79868 hgsc.bcm.edu;bcgsc.ca 37 X 110980011 110980011 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALG13 NM_001099922 exon23 c.G2599T p.G867C TCTAACGGTGCAG . 166.0 7.0 262.0 0.0 . 130 ALPL 249 hgsc.bcm.edu;bcgsc.ca 37 1 21902359 21902359 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALPL NM_000478 exon10 c.G1131T p.A377A CACTGCGGACCAT . 108.0 5.0 129.0 0.0 . 94 ANKRD17 26057 hgsc.bcm.edu;bcgsc.ca 37 4 74005966 74005966 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANKRD17 NM_032217 exon15 c.A2367G p.P789P GTTTGCTGGCAAA . 84.0 4.0 89.0 0.0 . 234 ANO10 55129 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 3 43621859 43621859 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANO10 NM_018075 exon5 c.A578G p.K193R TGATACTTCAAAG . 30.0 4.0 38.0 0.0 . 92 ANO6 196527 hgsc.bcm.edu;bcgsc.ca 37 12 45742051 45742051 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANO6 NM_001204803 exon6 c.A649T p.I217L TTTTACATAGTTG . 213.0 16.0 275.0 0.0 . 516 ANXA5 308 hgsc.bcm.edu;bcgsc.ca 37 4 122607464 122607464 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANXA5 NM_001154 exon3 c.C73A p.R25R CCTTCCGAAGAGT . 80.0 4.0 124.0 0.0 . 91 APCS 325 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 159558025 159558025 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . APCS NM_001639 exon2 c.A199T p.S67C GCCTACAGCCTCT . 178.0 13.0 90.0 0.0 . 154 ARID1B 57492 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 157502170 157502170 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARID1B NM_020732 exon12 c.A3203G p.E1068G AGCCAGAGAGAAA . 38.0 4.0 73.0 0.0 . 154 ARL5B 221079 hgsc.bcm.edu;bcgsc.ca 37 10 18963040 18963040 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARL5B NM_178815 exon5 c.C467A p.S156Y TTCAATCCTGCTG . 64.0 4.0 85.0 0.0 . 228 ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29192785 29192785 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATAD5 NM_024857 exon11 c.T3200C p.I1067T AACTTATAGGAAA . 229.0 68.0 279.0 0.0 . 93 ATP11A 23250 hgsc.bcm.edu;bcgsc.ca 37 13 113512575 113512575 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP11A NM_032189 exon22 c.T2638C p.S880P AGGATCTCTGAGC . 121.0 5.0 168.0 0.0 . 138 ATP2B1 490 hgsc.bcm.edu;bcgsc.ca 37 12 90015326 90015326 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP2B1 NM_001001323 exon9 c.G1587T p.L529F CCTTACCAATATT . 81.0 4.0 115.0 0.0 . 516 ATP6V1G2 534 hgsc.bcm.edu;bcgsc.ca 37 6 31513188 31513188 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP6V1G2 NM_130463 exon3 c.C354A p.A118A GCCCTAGGCAGAA . 58.0 4.0 56.0 0.0 . 90 BACE1 23621 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 117161738 117161739 + Frame_Shift_Ins INS - - C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BACE1 NM_012104 exon7 c.970_971insG p.L324fs CTCCTAGCCAGAA . 72.0 21.0 148.0 0.0 . 91 BAI1 575 hgsc.bcm.edu;bcgsc.ca 37 8 143603470 143603470 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BAI1 NM_001702 exon20 c.G3169A p.G1057S TGCCTGGGCTGGG . 57.0 4.0 64.0 0.0 . 1129 BBS1 582 hgsc.bcm.edu;bcgsc.ca 37 11 66283057 66283057 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BBS1 NM_024649 exon5 c.G479T p.R160L GCATCCGGTGAGA . 195.0 8.0 132.0 0.0 . 91 BIRC6 57448 hgsc.bcm.edu;bcgsc.ca 37 2 32678911 32678911 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BIRC6 NM_016252 exon23 c.G4654T p.G1552C GCTGAGGGTAGTT . 152.0 8.0 176.0 0.0 . 233 BMX 660 hgsc.bcm.edu;bcgsc.ca 37 X 15534284 15534284 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BMX NM_001721 exon5 c.C375T p.F125F GTTCTTCGTGGAC . 89.0 4.0 177.0 0.0 . 541 BOC 91653 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 3 112987288 112987288 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BOC NM_033254 exon5 c.C519T p.S173S GGCCTCCAGAGGT . 68.0 16.0 65.0 0.0 . 157 C11orf63 79864 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 122830087 122830087 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C11orf63 NM_024806 exon9 c.A2271G p.I757M GGAAATACTGCAG . 135.0 11.0 231.0 1.0 . 93 C11orf88 399949 hgsc.bcm.edu;bcgsc.ca 37 11 111385715 111385715 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C11orf88 NM_001100388 exon1 c.C206A p.P69H CGCGGCCCAGGAG . 65.0 5.0 74.0 0.0 . 226 C11orf94 143678 hgsc.bcm.edu;bcgsc.ca 37 11 45928125 45928125 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001080446 exon3 c.C292A p.L98I GTCATAGGTGTGC . 82.0 4.0 87.0 0.0 . . C20orf26 26074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 20055874 20055874 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C20orf26 NM_015585 exon5 c.T413C p.L138P TATTTCTCATCGT . 140.0 42.0 218.0 0.0 . 94 C2orf44 80304 hgsc.bcm.edu;bcgsc.ca 37 2 24261602 24261602 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C2orf44 NM_025203 exon2 c.G763T p.G255C CTTCACCAATAAC . 112.0 5.0 121.0 0.0 . 154 C2orf62 375307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219222293 219222293 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C2orf62 NM_198559 exon3 c.C155T p.T52M CTGAGACGCTGGC . 109.0 13.0 111.0 0.0 . 68 C3P1 388503 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10157854 10157854 + RNA SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C3P1 . . . . CGTGGCAGTTTGT . 205.0 47.0 184.0 0.0 . 90 CADM1 23705 hgsc.bcm.edu;bcgsc.ca 37 11 115109361 115109361 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CADM1 NM_014333 exon3 c.A283G p.S95G ACCTGCTGTCCTT . 86.0 4.0 129.0 0.0 . 92 CAMKK2 10645 hgsc.bcm.edu;bcgsc.ca 37 12 121701741 121701741 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CAMKK2 NM_153500 exon6 c.T627C p.R209R AGGGCGACCTGAA . 76.0 4.0 62.0 0.0 . 450 CAMSAP2 23271 hgsc.bcm.edu;bcgsc.ca 37 1 200708967 200708967 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_203459 exon1 c.T12C p.A4A GGATGCTGCAGAC . 184.0 8.0 175.0 0.0 . . CAPS2 84698 hgsc.bcm.edu;bcgsc.ca 37 12 75683540 75683540 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CAPS2 NM_032606 exon15 c.A1313G p.K438R TGTAGTTTTTCTT . 98.0 4.0 107.0 0.0 . 92 CBS 875 broad.mit.edu;ucsc.edu;mdanderson.org 37 21 44488625 44488625 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CBS NM_000071 exon4 c.G310T p.E104X AGAGCTCACACTT . 150.0 54.0 226.0 1.0 . 90 CBX7 23492 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 39530449 39530449 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CBX7 NM_175709 exon5 c.G555A p.A185A GCCAGCCGCCTGC . 56.0 20.0 88.0 0.0 . 227 CCDC164 92749 hgsc.bcm.edu;bcgsc.ca 37 2 26624926 26624926 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC164 NM_145038 exon1 c.C69T p.L23L GATTCTCGCGCCC . 64.0 4.0 122.0 0.0 . 92 CCDC22 28952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49105132 49105132 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC22 NM_014008 exon12 c.G1368T p.L456L AGAACTGCACCAG . 174.0 35.0 260.0 0.0 . 130 CCDC61 729440 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 46498359 46498359 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC61 . . . . CCGGCTCTCCCTT . 59.0 11.0 86.0 0.0 . 23 CCL15 6359 ucsc.edu;bcgsc.ca 37 17 34325404 34325404 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCL15 NM_032965 exon3 c.T160C p.C54R AGGTGCAGCAGTC . 41.0 4.0 51.0 0.0 . 91 CCNB1IP1 57820 ucsc.edu;bcgsc.ca 37 14 20784551 20784551 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCNB1IP1 NM_182852 exon6 c.A132G p.S44S AGCTGGTGAGCGA . 43.0 4.0 76.0 1.0 . 659 CCPG1 9236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 55664085 55664085 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCPG1 NM_020739 exon6 c.G612A p.K204K CAACTCCTTAGAA . 204.0 34.0 271.0 0.0 . 91 CCR9 10803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 45942794 45942794 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCR9 NM_031200 exon3 c.A514G p.I172V TTTACCATCTGGG . 72.0 20.0 106.0 0.0 . 660 CCT3 7203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156280946 156280946 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCT3 NM_005998 exon12 c.G1196A p.R399H ACATTGCGACACA . 157.0 23.0 141.0 0.0 . 92 CD177 57126 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 43858024 43858024 + RNA SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD177 . . . . GCTCTGCCAGTTT . 99.0 28.0 146.0 1.0 . 22 CD300C 10871 hgsc.bcm.edu;bcgsc.ca 37 17 72537867 72537867 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD300C NM_006678 exon4 c.T536C p.F179S TTGCTGAACAGGG . 55.0 4.0 76.0 0.0 . 90 CD300LG 146894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 41924620 41924620 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD300LG NM_001168323 exon1 c.G36A p.L12L CCTGCTGCTCCCA . 94.0 22.0 106.0 0.0 . 90 CD48 962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160648872 160648872 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD48 NM_001778 exon4 c.G702A p.V234V GGTGGGCACCGTG . 136.0 44.0 134.0 0.0 . 90 CD97 976 ucsc.edu;bcgsc.ca 37 19 14512305 14512305 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD97 NM_078481 exon10 c.A1005G p.E335E CCTTGAAGATATC . 28.0 4.0 53.0 0.0 . 570 CEP128 145508 hgsc.bcm.edu;bcgsc.ca 37 14 80971326 80971326 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CEP128 NM_152446 exon23 c.G3110T p.G1037V TCTAACCCACGAG . 61.0 4.0 78.0 0.0 . 91 CEP63 80254 hgsc.bcm.edu;bcgsc.ca 37 3 134264444 134264444 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CEP63 NM_001042383 exon7 c.G572T p.R191L TCAATCGGAAACA . 78.0 4.0 105.0 0.0 . 493 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 61765595 61765595 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHD7 NM_017780 exon31 c.C6311T p.A2104V TTGGTGCTGCTAA . 220.0 95.0 241.0 1.0 . 141 CHI3L2 1117 hgsc.bcm.edu;bcgsc.ca 37 1 111773369 111773369 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHI3L2 NM_004000 exon3 c.G76A p.A26T GGATCTGCCTACA . 60.0 4.0 77.0 0.0 . 514 CHST7 56548 hgsc.bcm.edu;bcgsc.ca 37 X 46433646 46433646 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHST7 NM_019886 exon1 c.G280T p.G94W GCTGTCGGGGAGG . 62.0 5.0 100.0 0.0 . 133 CLSTN2 64084 hgsc.bcm.edu;bcgsc.ca 37 3 140251313 140251313 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CLSTN2 NM_022131 exon9 c.G1492T p.G498C ACAGTCGGCGCTT . 91.0 5.0 122.0 0.0 . 157 CNST 163882 hgsc.bcm.edu;bcgsc.ca 37 1 246784775 246784775 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CNST NM_152609 exon3 c.C424T p.L142L AAAGTACTAAGCG . 92.0 4.0 68.0 0.0 . 90 CNTLN 54875 hgsc.bcm.edu;bcgsc.ca 37 9 17332673 17332673 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CNTLN NM_017738 exon10 c.A1589G p.K530R TACAGAAGCTGAG . 137.0 6.0 244.0 0.0 . 91 COL24A1 255631 hgsc.bcm.edu;broad.mit.edu 37 1 86340972 86340972 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL24A1 NM_152890 exon34 c.A3072G p.E1024E ACCTGGTTCACCT . 108.0 5.0 220.0 0.0 . 94 COL4A1 1282 hgsc.bcm.edu;bcgsc.ca 37 13 110831299 110831299 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL4A1 NM_001845 exon31 c.C2429A p.P810H CCTCCAGGGGGAC . 52.0 4.0 69.0 0.0 . 654 COL4A2 1284 hgsc.bcm.edu;bcgsc.ca 37 13 111144454 111144454 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL4A2 NM_001846 exon38 c.A3492G p.G1164G GCAGGGAGAGCTG . 57.0 4.0 84.0 0.0 . 95 CPSF4L 642843 hgsc.bcm.edu;bcgsc.ca 37 17 71257927 71257927 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CPSF4L NM_001129885 exon1 c.T31C p.F11L AGGTGAACCGCTC . 62.0 4.0 95.0 0.0 . 68 CREBBP 1387 hgsc.bcm.edu;bcgsc.ca 37 16 3778391 3778391 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CREBBP NM_004380 exon31 c.C6657A p.A2219A CATGCCGGCACTC . 76.0 5.0 82.0 0.0 . 1807 CRYBA1 1411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27580737 27580737 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CRYBA1 NM_005208 exon5 c.C437T p.P146L ACTACCCCTCCTT . 162.0 27.0 123.0 0.0 . 90 CSMD1 64478 hgsc.bcm.edu;bcgsc.ca 37 8 2967694 2967694 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSMD1 NM_033225 exon43 c.T6594C p.D2198D AATGTAATCGTTG . 52.0 4.0 72.0 0.0 . 86 CSRNP1 64651 hgsc.bcm.edu;bcgsc.ca 37 3 39184971 39184971 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSRNP1 NM_033027 exon5 c.T1345C p.F449L ATGTGAAGCTACA . 88.0 5.0 124.0 0.0 . 230 CSRNP1 64651 hgsc.bcm.edu;bcgsc.ca 37 3 39185786 39185786 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSRNP1 NM_033027 exon4 c.C622A p.R208R GAGCTCGACGTCG . 90.0 6.0 146.0 0.0 . 230 CTNNB1 1499 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266882 41266882 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CTNNB1 NM_001098209 exon5 c.A553G p.R185G GCTTCCAGACACG . 148.0 45.0 212.0 1.0 . 24361 CTNNB1 1499 hgsc.bcm.edu;bcgsc.ca 37 3 41275034 41275034 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CTNNB1 NM_001098209 exon9 c.T1200C p.G400G GGAAGGTCTCCTT . 97.0 5.0 107.0 0.0 . 24361 CXorf22 170063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 35989740 35989740 + Missense_Mutation SNP T T G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CXorf22 NM_152632 exon12 c.T2008G p.L670V ATAGGCTTAGAGC . 78.0 25.0 130.0 0.0 . 131 CYP4B1 1580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 47264911 47264911 + Nonsense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CYP4B1 NM_000779 exon1 c.G158A p.W53X CCCACTGGCTTTT . 70.0 25.0 137.0 0.0 . 92 DAGLB 221955 hgsc.bcm.edu;bcgsc.ca 37 7 6474496 6474496 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DAGLB NM_139179 exon4 c.T575C p.V192A TCCCACACGCTTG . 114.0 6.0 190.0 0.0 . 70 DDX17 10521 hgsc.bcm.edu;broad.mit.edu 37 22 38897259 38897259 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DDX17 NM_006386 exon2 c.T314C p.L105P GGGGGAAGGCCAC . 73.0 4.0 63.0 0.0 . 229 DGCR14 8220 hgsc.bcm.edu;bcgsc.ca 37 22 19126802 19126802 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DGCR14 NM_022719 exon6 c.T692C p.V231A TCAGGGACACCTG . 78.0 4.0 61.0 0.0 . 116 DIRAS3 9077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 68512864 68512864 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DIRAS3 NM_004675 exon2 c.C117T p.R39R CACGACGCGGTAA . 106.0 30.0 147.0 0.0 . 848 DKK3 27122 hgsc.bcm.edu;bcgsc.ca 37 11 11988502 11988502 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DKK3 NM_015881 exon6 c.A672G p.R224R CTCACCTCTCTGG . 129.0 6.0 232.0 0.0 . 721 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 32490308 32490308 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DMD NM_004006 exon22 c.C2922A p.I974I CTCCATGATTTCA . 156.0 45.0 216.0 0.0 . 265 DNAH14 127602 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 225440023 225440023 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAH14 NM_001373 exon44 c.G6751A p.E2251K ACTGGTGAATGTT . 460.0 209.0 485.0 2.0 . 23 DNAH6 1768 hgsc.bcm.edu;bcgsc.ca 37 2 84955003 84955003 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAH6 NM_001370 exon61 c.C10183A p.R3395R TTTCTCCGAGGTT . 91.0 4.0 103.0 0.0 . 69 DOC2A 8448 hgsc.bcm.edu;bcgsc.ca 37 16 30020840 30020840 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DOC2A NM_003586 exon3 c.C301A p.R101R AGGCCCGGTCGTA . 57.0 4.0 58.0 0.0 . 92 DSCAML1 57453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 117374691 117374691 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DSCAML1 NM_020693 exon11 c.G2408A p.R803H TGGATGCGGCCAG . 134.0 40.0 194.0 0.0 . 159 DST 667 hgsc.bcm.edu;bcgsc.ca 37 6 56350122 56350122 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DST NM_015548 exon69 c.C13326A p.I4442I ATTATCGATCAGA . 106.0 5.0 150.0 0.0 . 523 DST 667 hgsc.bcm.edu;bcgsc.ca 37 6 56365936 56365936 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DST NM_015548 exon61 c.A11969G p.E3990G TTCTGCTCACTTA . 77.0 5.0 103.0 0.0 . 523 DVL2 1856 hgsc.bcm.edu;bcgsc.ca 37 17 7132581 7132581 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DVL2 NM_004422 exon8 c.T830C p.F277S CCCAGGAAGTTGT . 79.0 4.0 115.0 0.0 . 659 DVL2 1856 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 7133190 7133190 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DVL2 NM_004422 exon5 c.T593C p.L198P GTCATGAGGGTAG . 50.0 4.0 93.0 0.0 . 659 DYNC1H1 1778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102494143 102494143 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DYNC1H1 NM_001376 exon47 c.C9236A p.A3079E ACCGGGCAGCTAC . 59.0 14.0 88.0 0.0 . 98 EFTUD2 9343 hgsc.bcm.edu;bcgsc.ca 37 17 42937415 42937415 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EFTUD2 NM_004247 exon19 c.1720-2A>G . TGAGCCTGAGATC . 116.0 5.0 145.0 0.0 . 91 EGLN2 112398 hgsc.bcm.edu;bcgsc.ca 37 19 41306565 41306565 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EGLN2 NM_053046 exon2 c.G88A p.G30S GAGCCTGGCCGGG . 96.0 4.0 108.0 0.0 . 228 EHBP1 23301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 62998523 62998523 + Missense_Mutation SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EHBP1 NM_001142616 exon5 c.A308C p.E103A TCATAGAAAATGT . 145.0 26.0 152.0 0.0 . 154 EIF2A 83939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 150285799 150285799 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EIF2A NM_032025 exon8 c.G660A p.K220K CTTTAAGGCAGAT . 61.0 19.0 60.0 0.0 . 22 EIF4A3 9775 hgsc.bcm.edu;bcgsc.ca 37 17 78109863 78109863 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EIF4A3 NM_014740 exon11 c.C1159A p.R387S GGATGCGGATGTC . 58.0 4.0 81.0 0.0 . 227 ELOVL6 79071 hgsc.bcm.edu;bcgsc.ca 37 4 111119423 111119423 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ELOVL6 NM_001130721 exon2 c.C69T p.I23I CCATTGGATGGCT . 78.0 5.0 140.0 0.0 . 91 EMILIN2 84034 hgsc.bcm.edu;bcgsc.ca 37 18 2891118 2891118 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EMILIN2 NM_032048 exon4 c.G993T p.E331D CATGGAGGGCATG . 78.0 5.0 88.0 0.0 . 93 ENPP3 5169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 132068028 132068028 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ENPP3 NM_005021 exon25 c.A2560G p.K854E CAGGATAAAGTGC . 151.0 37.0 217.0 0.0 . 95 EP300 2033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 41573037 41573037 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EP300 NM_001429 exon31 c.A5322T p.K1774N ACGGAAAACCAAT . 85.0 6.0 78.0 0.0 . 2011 ETF1 2107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 137844000 137844000 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ETF1 NM_004730 exon11 c.C1308T p.D436D CTAGTAGTCATCA . 124.0 19.0 96.0 0.0 . 229 EVX2 344191 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 176948256 176948256 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EVX2 NM_001080458 exon1 c.C249T p.G83G TTCGCTGCCCGTG . 259.0 52.0 226.0 1.0 . 70 FAM129B 64855 hgsc.bcm.edu;bcgsc.ca 37 9 130272586 130272586 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM129B NM_022833 exon9 c.T1000C p.C334R GCACGCACACCTC . 66.0 4.0 108.0 0.0 . 68 FAM155B 27112 hgsc.bcm.edu;bcgsc.ca 37 X 68725240 68725240 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM155B NM_015686 exon1 c.C115A p.R39R TCCGAGCGGGCGC . 55.0 4.0 54.0 0.0 . 131 FAM161A 84140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 62067708 62067708 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM161A NM_032180 exon3 c.C431T p.S144L TTTTCTGATACAG . 159.0 76.0 200.0 0.0 . 136 FANCM 57697 hgsc.bcm.edu;bcgsc.ca 37 14 45633698 45633698 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FANCM NM_020937 exon10 c.G1718T p.R573L TACAACGAATGGG . 80.0 4.0 128.0 0.0 . 569 FAT3 120114 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 92533159 92533159 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAT3 NM_001008781 exon9 c.T6980C p.V2327A AGATTGTCCAGGA . 56.0 23.0 78.0 1.0 . 73 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92616016 92616016 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAT3 NM_001008781 exon23 c.T12394C p.Y4132H GGCCAGTACTGCG . 76.0 22.0 130.0 0.0 . 73 FBXL22 283807 hgsc.bcm.edu;bcgsc.ca 37 15 63889776 63889776 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXL22 NM_203373 exon1 c.A185G p.K62R TCCAGAAGGACAA . 83.0 4.0 80.0 0.0 . 90 FBXW2 26190 hgsc.bcm.edu;bcgsc.ca 37 9 123526947 123526947 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXW2 NM_012164 exon8 c.G1255A p.E419K ATGCTTCGCCTGC . 95.0 5.0 115.0 0.0 . 227 FDPS 2224 hgsc.bcm.edu;bcgsc.ca 37 1 155289468 155289468 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FDPS NM_001135821 exon9 c.T913C p.F305L GAGTTCTTTCAGA . 88.0 4.0 118.0 0.0 . 90 FEM1A 55527 hgsc.bcm.edu;bcgsc.ca 37 19 4792961 4792961 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FEM1A NM_018708 exon1 c.C1095A p.T365T GATCACCGACCCG . 53.0 5.0 37.0 0.0 . 90 FGL2 10875 hgsc.bcm.edu;bcgsc.ca 37 7 76828978 76828978 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FGL2 NM_006682 exon1 c.A133G p.S45G CTCTGCTTTCTAG . 89.0 4.0 112.0 0.0 . 92 FKBP5 2289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 35604882 35604882 + Silent SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FKBP5 NM_001145775 exon4 c.T159G p.V53V GACATAAACTTTG . 117.0 40.0 204.0 0.0 . 227 FLRT1 23769 hgsc.bcm.edu;bcgsc.ca 37 11 63884020 63884020 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FLRT1 NM_013280 exon2 c.A281G p.N94S AGATCAACAACGC . 61.0 5.0 65.0 0.0 . 90 FMO3 2328 hgsc.bcm.edu;bcgsc.ca 37 1 171076816 171076816 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FMO3 NM_006894 exon4 c.A322G p.T108A TCTTAGACATTTG . 143.0 6.0 156.0 0.0 . 187 FOCAD 54914 hgsc.bcm.edu;bcgsc.ca 37 9 20907148 20907148 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_017794 exon24 c.2626-1G>T . CCCATAGGTTCAT . 64.0 4.0 80.0 0.0 . . FOXL1 2300 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 86612739 86612739 + Missense_Mutation SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FOXL1 NM_005250 exon1 c.A410C p.N137T ACGGCAACTACCG . 93.0 12.0 63.0 1.0 . 227 FOXL1 2300 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 86612753 86612753 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FOXL1 NM_005250 exon1 c.A424G p.K142E CGCCGGAAGAGGA . 67.0 11.0 52.0 1.0 . 227 FOXR1 283150 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 118842683 118842683 + Silent SNP C C A rs145283417 byfrequency TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FOXR1 NM_181721 exon1 c.C42A p.L14L TCACCTCCCCTTA . 25.0 13.0 73.0 0.0 C|0.999;A|0.001 228 FOXR2 139628 hgsc.bcm.edu;bcgsc.ca 37 X 55650629 55650629 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FOXR2 NM_198451 exon1 c.C485A p.P162Q AGGAACCAGACGA . 86.0 5.0 154.0 0.0 . 227 FUCA1 2517 hgsc.bcm.edu;bcgsc.ca 37 1 24186295 24186295 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FUCA1 NM_000147 exon4 c.C761A p.P254H TTGACAGGGCTGT . 73.0 4.0 90.0 0.0 . 153 G3BP2 9908 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 76573877 76573877 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . G3BP2 NM_012297 exon9 c.C874T p.R292C GTTCACGCACACG . 35.0 4.0 34.0 0.0 . 153 GAB1 2549 hgsc.bcm.edu;bcgsc.ca 37 4 144378898 144378898 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GAB1 NM_207123 exon7 c.G1651T p.G551C ACCATAGGTGACT . 87.0 4.0 112.0 0.0 . 1146 GABRA1 2554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 161300201 161300201 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GABRA1 NM_001127643 exon6 c.C334A p.R112R GTCCTCCGGTTAA . 133.0 42.0 167.0 0.0 . 93 GABRB3 2562 hgsc.bcm.edu;bcgsc.ca 37 15 26812847 26812847 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GABRB3 NM_021912 exon7 c.T716C p.L239S CTCTTCAACCGAA . 80.0 4.0 103.0 0.0 . 518 GAS2L1 10634 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29706429 29706429 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GAS2L1 NM_152237 exon3 c.G634T p.V212L CCTCAGGTGAGGG . 174.0 73.0 130.0 1.0 . 90 GAS2L1 10634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29706428 29706428 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GAS2L1 NM_152237 exon3 c.634-1G>T . GCCTCAGGTGAGG . 173.0 72.0 129.0 0.0 . 90 GDPD3 79153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30124047 30124047 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GDPD3 NM_024307 exon3 c.G250A p.V84M GTGACACCACCAC . 40.0 13.0 52.0 0.0 . 90 GFM2 84340 hgsc.bcm.edu;bcgsc.ca 37 5 74028915 74028915 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GFM2 NM_032380 exon16 c.C1519A p.H507N ACGCATGTTCCAA . 84.0 4.0 108.0 0.0 . 90 GIPC1 10755 hgsc.bcm.edu;bcgsc.ca 37 19 14589371 14589371 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GIPC1 NM_202468 exon8 c.A859G p.M287V CCACCATGGTGGC . 107.0 6.0 149.0 0.0 . 226 GLUD2 2747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 120181981 120181981 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GLUD2 NM_012084 exon1 c.G443A p.G148E GCAAGGGAGGTAT . 147.0 38.0 246.0 0.0 . 131 GMPPA 29926 hgsc.bcm.edu;bcgsc.ca 37 2 220366718 220366718 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GMPPA NM_205847 exon5 c.C388T p.H130Y GAAGCCCACCGAC . 65.0 6.0 115.0 0.0 . 90 GNLY 10578 hgsc.bcm.edu;bcgsc.ca 37 2 85922521 85922521 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GNLY NM_006433 exon2 c.C131T p.P44L CCTGCCCGTGCCT . 84.0 4.0 78.0 0.0 . 90 GPBAR1 151306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219127770 219127770 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPBAR1 NM_170699 exon2 c.G323T p.G108V TGCACGGGGAGCG . 122.0 21.0 109.0 0.0 . 23 GPR123 84435 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134910585 134910585 + Silent SNP C C T rs62624493 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR123 NM_001083909 exon3 c.C111T p.V37V CTTCGTCACCTAC . 36.0 8.0 35.0 0.0 C|0.725;G|0.275 90 GPR1 2825 hgsc.bcm.edu;bcgsc.ca 37 2 207041152 207041152 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR1 NM_001098199 exon3 c.C820A p.H274N TATTGTGGTGAAT . 83.0 4.0 127.0 0.0 . 90 GPR68 8111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 91700499 91700499 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR68 NM_001177676 exon2 c.G896A p.R299H CGGAGGCGGGCCA . 32.0 11.0 40.0 0.0 . 91 GPSM1 26086 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 139250846 139250846 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPSM1 NM_001145638 exon13 c.C1665T p.I555I CCTCATCGCCAGC . 65.0 19.0 76.0 0.0 . 90 GREB1L 80000 hgsc.bcm.edu;bcgsc.ca 37 18 19079688 19079688 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001142966 exon22 c.3392-2A>G . TCTCACAGGTTCC . 67.0 4.0 77.0 0.0 . . GRID2IP 392862 hgsc.bcm.edu;bcgsc.ca 37 7 6561059 6561059 + Splice_Site SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001145118 exon7 c.1084+1G>A . GTCTCACCACTGG . 97.0 5.0 144.0 0.0 . . GRIK1 2897 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 21 30971254 30971254 + Silent SNP G G T rs113829116 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIK1 NM_175611 exon8 c.C1102A p.R368R CCCACCGGGCCTG . 45.0 4.0 48.0 0.0 T|0.000;C|0.999 137 GRIN1 2902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 140036523 140036523 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIN1 NM_000832 exon2 c.C317T p.P106L CCACCCCTGTCTC . 191.0 32.0 287.0 0.0 . 187 GRIP2 80852 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 14548375 14548375 + RNA SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIP2 . . . . CACTGGGCACAGC . 77.0 28.0 124.0 1.0 . 69 GRIPAP1 56850 hgsc.bcm.edu;bcgsc.ca 37 X 48855662 48855662 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIPAP1 NM_020137 exon3 c.C159T p.S53S AGCTTTGCTGAAC . 137.0 6.0 175.0 0.0 . 227 GTSE1 51512 hgsc.bcm.edu;bcgsc.ca 37 22 46704834 46704834 + Silent SNP G G T rs200502529 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GTSE1 NM_016426 exon4 c.G756T p.A252A GGCTGCGGAGAAG . 64.0 4.0 112.0 0.0 G|0.999;A|0.001 187 GUSB 2990 hgsc.bcm.edu;bcgsc.ca 37 7 65435344 65435344 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GUSB NM_000181 exon9 c.C1401A p.I467I GTGAGCGATCACC . 89.0 5.0 82.0 0.0 . 90 GZF1 64412 hgsc.bcm.edu;bcgsc.ca 37 20 23345335 23345335 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GZF1 NM_022482 exon1 c.G315T p.R105R AGATCGGGTGCAG . 93.0 4.0 123.0 0.0 . 91 HGFAC 3083 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 4 3443800 3443800 + Silent SNP G G C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HGFAC NM_001528 exon1 c.G72C p.L24L CCTCCTGCTGCTG . 22.0 4.0 27.0 0.0 . 514 HIPK1 204851 hgsc.bcm.edu;bcgsc.ca 37 1 114499248 114499248 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HIPK1 NM_152696 exon6 c.1408-1G>T . TTGGAAGGTGAAT . 60.0 4.0 95.0 0.0 . 361 HNRNPL 3191 hgsc.bcm.edu;bcgsc.ca 37 19 39336338 39336338 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HNRNPL NM_001533 exon4 c.T662C p.V221A CTCTGGACAGGGC . 66.0 4.0 79.0 0.0 . 22 HSD3B7 80270 hgsc.bcm.edu;bcgsc.ca 37 16 30997766 30997766 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HSD3B7 NM_025193 exon4 c.T345C p.A115A CGAGGCTTGTGTG . 123.0 6.0 96.0 0.0 . 90 HSPA8 3312 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 122930222 122930222 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HSPA8 NM_006597 exon5 c.A1079G p.N360S CTCTTATTCAGTT . 122.0 12.0 146.0 0.0 . 654 HTT 3064 hgsc.bcm.edu;bcgsc.ca 37 4 3131704 3131704 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HTT NM_002111 exon13 c.G1797T p.Q599H GCCCCAGGATGAA . 99.0 6.0 100.0 0.0 . 281 HTT 3064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3225849 3225849 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HTT NM_002111 exon56 c.G7756T p.A2586S TCTCCGGCTACTA . 98.0 35.0 98.0 0.0 . 281 ICMT 23463 broad.mit.edu;ucsc.edu 37 1 6292060 6292060 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ICMT NM_012405 exon4 c.G574T p.E192X ATTTTTCATTCTG . 182.0 44.0 157.0 2.0 . 650 IFIT2 3433 hgsc.bcm.edu;bcgsc.ca 37 10 91066851 91066851 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IFIT2 NM_001547 exon2 c.T1138C p.F380L GGCAACTTTCAGC . 91.0 4.0 96.0 0.0 . 92 IFT122 55764 hgsc.bcm.edu;bcgsc.ca 37 3 129238004 129238004 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IFT122 NM_052985 exon29 c.C3599A p.P1200Q AGGACCCGTTCAC . 93.0 5.0 145.0 0.0 . 92 IGDCC3 9543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65621487 65621487 + Splice_Site SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IGDCC3 NM_004884 exon15 c.2206-1G>T . ATCCTGCTGGGGA . 46.0 16.0 51.0 0.0 . 93 IGF2R 3482 hgsc.bcm.edu;bcgsc.ca 37 6 160450671 160450671 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IGF2R NM_000876 exon7 c.C866A p.P289Q TTTGCCCGTCGGA . 125.0 5.0 168.0 0.0 . 118 IKBKAP 8518 hgsc.bcm.edu;bcgsc.ca 37 9 111665171 111665171 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IKBKAP NM_003640 exon16 c.T1802C p.V601A AACCGAACAGGAA . 120.0 6.0 175.0 0.0 . 318 IKZF3 22806 bcgsc.ca;mdanderson.org 37 17 37922726 37922726 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IKZF3 NM_012481 exon8 c.G847T p.D283Y TGACATCAAAGCA . 19.0 3.0 29.0 0.0 . 971 IL1R1 3554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 102791944 102791944 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IL1R1 NM_000877 exon10 c.A1142G p.D381G CTTCAGATGGAAA . 557.0 109.0 555.0 0.0 . 523 IRF6 3664 hgsc.bcm.edu;bcgsc.ca 37 1 209974642 209974642 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IRF6 NM_006147 exon3 c.C117T p.P39P TTTCCAGGGAATC . 79.0 4.0 101.0 0.0 . 92 KAT2B 8850 hgsc.bcm.edu;bcgsc.ca 37 3 20153102 20153102 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KAT2B NM_003884 exon6 c.G866A p.C289Y GTTACTGCAACGT . 73.0 4.0 86.0 0.0 . 228 KBTBD3 143879 hgsc.bcm.edu;bcgsc.ca 37 11 105924774 105924774 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KBTBD3 NM_152433 exon3 c.G642A p.M214I CAGTACCATTTCT . 92.0 4.0 88.0 0.0 . 91 KCNA10 3744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 111061042 111061042 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNA10 NM_005549 exon1 c.A368G p.D123G ATGGAGTCAAAGA . 29.0 5.0 42.0 0.0 . 156 KCNA5 3741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 5153812 5153812 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNA5 NM_002234 exon1 c.C499T p.R167C TTCGACCGCAACC . 63.0 26.0 98.0 0.0 . 715 KCNAB1 7881 hgsc.bcm.edu;bcgsc.ca 37 3 155838515 155838515 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNAB1 NM_172160 exon1 c.T115C p.S39P AAAGCCTCAGAAA . 137.0 6.0 197.0 0.0 . 94 KCNH4 23415 hgsc.bcm.edu;bcgsc.ca 37 17 40321671 40321671 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNH4 NM_012285 exon9 c.G1414A p.G472R CGTTCCCGAACAC . 66.0 4.0 73.0 0.0 . 153 KCNQ3 3786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133153569 133153569 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNQ3 NM_004519 exon10 c.G1272A p.L424L GAGACCCAGCTTT . 105.0 50.0 85.0 0.0 . 138 KDM6B 23135 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 7749921 7749921 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KDM6B NM_001080424 exon8 c.C574T p.R192W GCCAAGCGGGGAG . 63.0 26.0 73.0 0.0 . 205 KDSR 2531 hgsc.bcm.edu;bcgsc.ca 37 18 61034244 61034244 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KDSR NM_002035 exon1 c.G108A p.V36V ACTCACCACCACA . 134.0 6.0 226.0 0.0 . 227 KIAA1033 23325 hgsc.bcm.edu;bcgsc.ca 37 12 105534742 105534742 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1033 NM_015275 exon17 c.G1626T p.L542F AGTTTTGGCTGAA . 103.0 5.0 162.0 0.0 . 91 KIAA1429 25962 hgsc.bcm.edu;bcgsc.ca 37 8 95531221 95531221 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1429 NM_015496 exon9 c.A2505G p.E835E CAAGGCTTCTTTG . 68.0 4.0 64.0 0.0 . 92 KIAA1549 57670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138554406 138554406 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1549 NM_020910 exon14 c.C4653T p.D1551D CAGGTCGTCTACC . 194.0 31.0 161.0 0.0 . 369 KIF18B 146909 hgsc.bcm.edu;bcgsc.ca 37 17 43012257 43012257 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIF18B NM_001264573 exon4 c.T518C p.L173P ATGGCAAGGGGCC . 56.0 5.0 57.0 0.0 . 70 KIF19 124602 hgsc.bcm.edu;bcgsc.ca 37 17 72324604 72324604 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIF19 NM_153209 exon2 c.A80G p.E27G AGCTGGAGGAAGG . 49.0 4.0 78.0 0.0 . 90 KLC2 64837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66031564 66031564 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLC2 NM_022822 exon8 c.G990T p.L330L CAACCTGGCCCTG . 142.0 18.0 118.0 0.0 . 90 KLF12 11278 hgsc.bcm.edu;bcgsc.ca 37 13 74420058 74420058 + Silent SNP C C A rs200955639 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLF12 NM_007249 exon4 c.G576T p.S192S AGGCACCGACTGT . 137.0 7.0 166.0 0.0 C|0.999;T|0.000 91 KRT16 3868 hgsc.bcm.edu;bcgsc.ca 37 17 39766790 39766790 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRT16 NM_005557 exon6 c.A1073G p.E358G CTGTTCTCCAGGG . 83.0 4.0 98.0 0.0 . 91 KRTAP10-7 386675 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 46020985 46020985 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_198689 exon2 c.C449A p.P150H CCTCCCCCTGCCA . 437.0 120.0 630.0 0.0 . . LAMB4 22798 hgsc.bcm.edu;bcgsc.ca 37 7 107720067 107720067 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LAMB4 NM_007356 exon15 c.T1866C p.I622I AATGGCAATGGTG . 49.0 4.0 74.0 0.0 . 140 LPAR3 23566 hgsc.bcm.edu;bcgsc.ca 37 1 85331068 85331068 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPAR3 NM_012152 exon2 c.G736T p.G246W ACCTACCTAAGAC . 71.0 4.0 118.0 0.0 . 502 LPIN3 64900 hgsc.bcm.edu;bcgsc.ca 37 20 39986061 39986061 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPIN3 NM_022896 exon16 c.C2013A p.I671I GGGCATCACCAGT . 65.0 5.0 66.0 0.0 . 93 LPO 4025 hgsc.bcm.edu;bcgsc.ca 37 17 56344752 56344752 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPO NM_006151 exon12 c.A1736G p.Q579R AGCCGCAGACACT . 62.0 4.0 88.0 0.0 . 91 LPP 4026 hgsc.bcm.edu;bcgsc.ca 37 3 188592145 188592145 + Missense_Mutation SNP G G T rs9830664 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPP NM_005578 exon11 c.G1717T p.G573C GATTGCGGTGGTC . 79.0 4.0 67.0 0.0 G|0.998;A|0.002 659 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57573622 57573622 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1 NM_002332 exon30 c.C5024G p.T1675R TCTGGACAAGCTA . 72.0 16.0 89.0 0.0 . 596 LRP1B 53353 hgsc.bcm.edu;bcgsc.ca 37 2 141777526 141777526 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1B NM_018557 exon12 c.T1935C p.S645S GGGATGAGACATT . 84.0 5.0 100.0 0.0 . 311 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141773444 141773444 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1B NM_018557 exon13 c.G2011T p.D671Y CGCTGTCATCTAT . 238.0 72.0 322.0 0.0 . 311 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 170044602 170044602 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP2 NM_004525 exon49 c.A9206T p.H3069L GGGGTGTGGCACA . 196.0 49.0 318.0 0.0 . 175 LRP4 4038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46896443 46896443 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP4 NM_002334 exon28 c.C4137A p.V1379V AACAGGGACATGC . 114.0 31.0 134.0 0.0 . 94 LRRC43 254050 hgsc.bcm.edu;bcgsc.ca 37 12 122669301 122669301 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRRC43 NM_001098519 exon2 c.G386T p.R129L ACTTCCGGTCCCT . 144.0 6.0 192.0 0.0 . 135 LSS 4047 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 21 47616149 47616149 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LSS NM_001001438 exon18 c.G1703T p.R568L TGCCGCCGACAGA . 41.0 4.0 72.0 0.0 . 90 LUZP2 338645 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 24759781 24759781 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LUZP2 NM_001252010 exon4 c.C266G p.S89C TGAAGTCTCTTCA . 183.0 55.0 251.0 1.0 . 92 LYG2 254773 hgsc.bcm.edu;bcgsc.ca 37 2 99870712 99870712 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LYG2 NM_175735 exon2 c.C12A p.S4S CACCACGGAGGAT . 57.0 5.0 73.0 0.0 . 91 MAT1A 4143 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 82039957 82039957 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAT1A NM_000429 exon5 c.C521A p.P174H AGCCAGGGGAGGA . 70.0 19.0 100.0 0.0 . 90 MBD1 4152 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 47803368 47803368 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MBD1 NM_001204137 exon4 c.G226T p.A76S GATGGGCCTGGAA . 131.0 28.0 166.0 0.0 . 228 MCM3AP 8888 hgsc.bcm.edu;bcgsc.ca 37 21 47680812 47680812 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MCM3AP NM_003906 exon15 c.A3476G p.Q1159R CTCTCTTGTTTCA . 54.0 4.0 122.0 0.0 . 291 MCM8 84515 broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 5974231 5974231 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MCM8 NM_032485 exon18 c.T2320C p.S774P AACAGGTCAACAG . 88.0 8.0 111.0 1.0 . 227 MGAT1 4245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 180219412 180219412 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MGAT1,NS,carcinoma,-1 MGAT1 NM_001114617 exon3 c.G560T p.R187L TAGTGGCGCGCGA . 91.0 30.0 110.0 0.0 . 91 MLL 4297 hgsc.bcm.edu;bcgsc.ca 37 11 118377325 118377325 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MLL NM_001197104 exon27 c.C10718T p.P3573L ACATTCCAGACCA . 51.0 4.0 104.0 0.0 . 1255 MLL4 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36229093 36229093 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MLL4 NM_014727 exon36 c.7872+1G>T . GGGAAGGTGGGCT . 46.0 16.0 123.0 0.0 . 697 MLLT1 4298 hgsc.bcm.edu;bcgsc.ca 37 19 6222582 6222582 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MLLT1 NM_005934 exon6 c.T660C p.R220R CTGCTCACGCTCC . 71.0 5.0 58.0 0.0 . 658 MOCOS 55034 hgsc.bcm.edu;bcgsc.ca 37 18 33775243 33775243 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MOCOS NM_017947 exon2 c.G166T p.G56C CATGCAGGTGCCA . 99.0 4.0 92.0 0.0 . 91 MRPS5 64969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 95756225 95756225 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MRPS5 NM_031902 exon11 c.G974A p.R325Q ATGAGCCGGCAGA . 87.0 24.0 122.0 0.0 . 92 MRVI1 10335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10603489 10603489 + Missense_Mutation SNP G G A rs199557491 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MRVI1 NM_130385 exon19 c.C2285T p.A762V GTCAGCGCAGGAG . 76.0 33.0 126.0 0.0 G|0.999;A|0.001 25 MS4A13 503497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 60292725 60292725 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MS4A13 NM_001012417 exon5 c.A232T p.I78F ACTACAATTACTG . 373.0 126.0 408.0 0.0 . 90 MYH14 79784 hgsc.bcm.edu;bcgsc.ca 37 19 50792838 50792838 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYH14 NM_001145809 exon35 c.A4898G p.Q1633R AGACTCAGCATGA . 70.0 4.0 82.0 0.0 . 23 MYO6 4646 hgsc.bcm.edu;bcgsc.ca 37 6 76542624 76542624 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYO6 NM_004999 exon6 c.T457A p.S153T GGAGAATCAGGAG . 84.0 4.0 109.0 0.0 . 92 NBEA 26960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 36239245 36239245 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NBEA NM_015678 exon55 c.G8323A p.V2775I AGAGCCGTCCTCA . 177.0 53.0 282.0 0.0 . 144 NBEAL2 23218 hgsc.bcm.edu;bcgsc.ca 37 3 47046023 47046023 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NBEAL2 NM_015175 exon38 c.G6237T p.L2079F GTACTTGATGCAA . 74.0 4.0 139.0 0.0 . 69 NCOA3 8202 broad.mit.edu;bcgsc.ca 37 20 46265318 46265320 + In_Frame_Del DEL AAG AAG - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 AAG AAG . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NCOA3 NM_001174088 exon12 c.2218_2220del p.740_740del AGTCCTAAGAAGA . 205.0 28.0 197.0 0.0 . 229 NCOA3 8202 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46264392 46264392 + Missense_Mutation SNP T T G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NCOA3 NM_001174088 exon11 c.T1469G p.I490S AGAATATCATGAT . 143.0 37.0 143.0 0.0 . 229 NDEL1 81565 hgsc.bcm.edu;bcgsc.ca 37 17 8347657 8347657 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NDEL1 NM_001025579 exon2 c.C68A p.S23Y AACTTTCCTTGAA . 88.0 4.0 120.0 0.0 . 90 NDUFAF1 51103 hgsc.bcm.edu;bcgsc.ca 37 15 41687071 41687071 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NDUFAF1 NM_016013 exon3 c.T745C p.W249R CCTGCCAGTAGGG . 71.0 4.0 95.0 0.0 . 91 NEDD4L 23327 hgsc.bcm.edu;bcgsc.ca 37 18 56002763 56002763 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NEDD4L NM_001144967 exon13 c.A1119G p.E373E TGAGGAACCAACG . 115.0 5.0 110.0 0.0 . 658 NEIL1 79661 hgsc.bcm.edu;bcgsc.ca 37 15 75647049 75647049 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NEIL1 NM_001256552 exon9 c.T1250C p.L417P GAGACCTTCCTAA . 66.0 4.0 82.0 0.0 . 659 NOL4 8715 hgsc.bcm.edu;bcgsc.ca 37 18 31523052 31523052 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NOL4 NM_003787 exon9 c.A1519G p.R507G GCATCCTCTTGGC . 65.0 4.0 89.0 0.0 . 93 NSD1 64324 hgsc.bcm.edu;bcgsc.ca 37 5 176722361 176722361 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NSD1 NM_022455 exon23 c.T7992C p.S2664S CTGGTCTCTTGGA . 96.0 5.0 139.0 0.0 . 188 NSD1 64324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176722236 176722236 + Missense_Mutation SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NSD1 NM_022455 exon23 c.A7867C p.S2623R GAGCAAAGTCCCT . 110.0 39.0 151.0 0.0 . 188 NTRK2 4915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 87339221 87339221 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NTRK2 NM_001018065 exon8 c.C803T p.A268V GTGTGGCGGAAAA . 140.0 35.0 188.0 0.0 . 1404 NTRK3 4916 hgsc.bcm.edu;bcgsc.ca 37 15 88679734 88679734 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NTRK3 NM_001243101 exon8 c.G729C p.W243C GACTATCCAGTCC . 75.0 4.0 134.0 0.0 . 3538 NUDT5 11164 hgsc.bcm.edu;bcgsc.ca 37 10 12219892 12219892 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d NUDT5,NS,NS,-1 NUDT5 NM_014142 exon5 c.G189T p.A63A GATGACCGCGACA . 48.0 4.0 57.0 0.0 . 92 NUP188 23511 hgsc.bcm.edu;bcgsc.ca 37 9 131765691 131765691 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NUP188 NM_015354 exon38 c.G4392T p.K1464N CATGAAGGAGTGG . 46.0 4.0 67.0 0.0 . 207 NYAP2 57624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 226378371 226378371 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_020864 exon3 c.C506T p.T169I GGAAAACCCCTGA . 67.0 14.0 86.0 0.0 . . NYAP2 57624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 226447056 226447056 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_020864 exon4 c.A923G p.K308R TCGCCAAGGCCTC . 117.0 27.0 114.0 0.0 . . OAS1 4938 hgsc.bcm.edu;bcgsc.ca 37 12 113357204 113357204 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OAS1 NM_016816 exon6 c.A1049G p.N350S AAAGCAACAGTGC . 92.0 5.0 93.0 0.0 . 70 OGDHL 55753 hgsc.bcm.edu;bcgsc.ca 37 10 50948862 50948862 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OGDHL NM_018245 exon16 c.T2034C p.H678H CTGGTCATGGAGA . 47.0 4.0 67.0 0.0 . 69 OR10A3 26496 hgsc.bcm.edu;bcgsc.ca 37 11 7960614 7960614 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR10A3 NM_001003745 exon1 c.G454T p.G152W TGATCCCTGAGAT . 129.0 6.0 117.0 0.0 . 69 OR10G8 219869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 123901212 123901212 + Nonsense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR10G8 NM_001004464 exon1 c.A883T p.K295X GAGGTGAAGAAAG . 201.0 63.0 284.0 0.0 . 92 OR2AG2 338755 broad.mit.edu;bcgsc.ca 37 11 6789972 6789972 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR2AG2 NM_001004490 exon1 c.T217C p.F73L ATGTGAACAGGAG . 119.0 6.0 183.0 1.0 . 71 OR4K14 122740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20483233 20483233 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR4K14 NM_001004712 exon1 c.G120T p.L40L GTTACCCAGCATA . 224.0 78.0 296.0 0.0 . 115 OR8G5 219865 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 11 124134976 124134976 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001005198 exon1 c.G254A p.G85E TGATTGGGCTCAG . 123.0 34.0 137.0 0.0 . . OXA1L 5018 hgsc.bcm.edu;bcgsc.ca 37 14 23237290 23237290 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OXA1L NM_005015 exon3 c.G529T p.G177W GGGCTGGGGTCAT . 68.0 4.0 113.0 0.0 . 204 P2RX3 5024 hgsc.bcm.edu;bcgsc.ca 37 11 57115686 57115686 + Missense_Mutation SNP G G T rs115850675 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . P2RX3 NM_002559 exon5 c.G434T p.R145L TGCTCCGGACCTG . 68.0 5.0 57.0 0.0 G|0.996;A|0.004 68 P4HB 5034 hgsc.bcm.edu;bcgsc.ca 37 17 79817083 79817083 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . P4HB NM_000918 exon2 c.A326G p.D109G GCCGTGTCTCCAT . 82.0 6.0 116.0 0.0 . 46 PADI4 23569 hgsc.bcm.edu;bcgsc.ca 37 1 17674451 17674451 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PADI4 NM_012387 exon10 c.G1063T p.G355C GAGATCGGCTACA . 65.0 4.0 119.0 0.0 . 70 PALM2-AKAP2 445815 hgsc.bcm.edu;bcgsc.ca 37 9 112899145 112899145 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PALM2-AKAP2 NM_007203 exon8 c.A1321G p.R441G AAAGTGAGGCCTT . 93.0 4.0 130.0 0.0 . 475 PARP14 54625 hgsc.bcm.edu;bcgsc.ca 37 3 122419215 122419215 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PARP14 NM_017554 exon6 c.A1814G p.N605S TTGAGAACAAAGA . 79.0 4.0 92.0 0.0 . 525 PAWR 5074 hgsc.bcm.edu;bcgsc.ca 37 12 80007382 80007382 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAWR NM_002583 exon4 c.C656A p.P219H GTTCTAGGTGGCT . 98.0 6.0 137.0 0.0 . 90 PAXIP1 22976 hgsc.bcm.edu;bcgsc.ca 37 7 154738503 154738503 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAXIP1 NM_007349 exon18 c.A2943G p.T981T TCCAGGTGTGATG . 49.0 4.0 44.0 0.0 . 228 PCDHAC2 56134 hgsc.bcm.edu;bcgsc.ca 37 5 140347691 140347691 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHAC2 NM_031883 exon1 c.C1340A p.P447Q GAATACCGCAGCT . 87.0 5.0 151.0 0.0 . 26 PCDHGA6 56109 hgsc.bcm.edu;bcgsc.ca 37 5 140754660 140754660 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHGA6 NM_018919 exon1 c.T1010C p.I337T TAACTATCTTGGA . 98.0 6.0 151.0 0.0 . 67 PCDHGC5 56097 ucsc.edu;bcgsc.ca 37 5 140871104 140871104 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHGC5 NM_018929 exon1 c.C2297A p.P766H TGCGGCCCACAGA . 42.0 4.0 99.0 0.0 . 25 PDE6A 5145 hgsc.bcm.edu;bcgsc.ca 37 5 149278051 149278051 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PDE6A NM_000440 exon10 c.G1282T p.G428C ACCAGCCCAGAAA . 57.0 4.0 52.0 0.0 . 92 PDXDC1 23042 hgsc.bcm.edu;bcgsc.ca 37 16 15127208 15127208 + Silent SNP C C A rs151129728 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PDXDC1 NM_015027 exon19 c.C1764A p.L588L TGAGCTCGTGGAG . 72.0 4.0 86.0 0.0 C|1.000;T|0.000 91 PGD 5226 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 10471547 10471547 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PGD NM_002631 exon7 c.A592T p.I198F CAGCTGATCTGTG . 134.0 48.0 175.0 0.0 . 91 PGM5 5239 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 71144546 71144546 + Missense_Mutation SNP C C G rs190312271 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PGM5 NM_021965 exon11 c.C1678G p.R560G ACTGGCCGGAGGG . 104.0 34.0 140.0 1.0 C|0.999;T|0.001 92 PHF19 26147 hgsc.bcm.edu;bcgsc.ca 37 9 123636996 123636996 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHF19 NM_015651 exon2 c.A24G p.P8P AGTCCCTGGATCC . 63.0 4.0 58.0 0.0 . 136 PHKA1 5255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 71915637 71915637 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHKA1 NM_001172436 exon4 c.G375A p.V125V ATCACCCACTACA . 886.0 223.0 1273.0 1.0 . 134 PHLDB2 90102 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 111604197 111604197 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHLDB2 NM_001134437 exon3 c.C1354T p.L452L GATGACCTGATGG . 66.0 18.0 73.0 1.0 . 96 PKD1L1 168507 hgsc.bcm.edu;bcgsc.ca 37 7 47898327 47898327 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKD1L1 NM_138295 exon27 c.A4306G p.K1436E CCTCCTTCGAGTT . 77.0 4.0 80.0 0.0 . 145 PKD1L1 168507 hgsc.bcm.edu;bcgsc.ca 37 7 47947753 47947753 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKD1L1 NM_138295 exon9 c.C1323A p.A441A AGACACGGCCTCA . 75.0 4.0 75.0 0.0 . 145 PLEK 5341 hgsc.bcm.edu;bcgsc.ca 37 2 68607861 68607861 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEK NM_002664 exon3 c.T205C p.F69L TTTGTGTTTAAGA . 95.0 5.0 111.0 0.0 . 91 PLEKHG1 57480 hgsc.bcm.edu;bcgsc.ca 37 6 151152098 151152098 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEKHG1 NM_001029884 exon16 c.A1851G p.T617T CAACACATGCCCT . 62.0 4.0 114.0 0.0 . 92 PLXNB2 23654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 50720691 50720691 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLXNB2 NM_012401 exon19 c.G3039A p.R1013R GGCAAACCTCTGG . 90.0 20.0 122.0 0.0 . 211 PLXNB3 5365 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 153032892 153032892 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLXNB3 NM_001163257 exon4 c.G679T p.A227S CCCCTGGCCATCC . 66.0 10.0 50.0 0.0 . 130 POLR2I 5438 hgsc.bcm.edu;bcgsc.ca 37 19 36605106 36605106 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . POLR2I NM_006233 exon4 c.C236A p.P79Q GTCCGCGGCAACG . 123.0 7.0 129.0 0.0 . 90 POPDC2 64091 hgsc.bcm.edu;bcgsc.ca 37 3 119378819 119378819 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . POPDC2 NM_022135 exon1 c.A452G p.E151G GGTGTCTCACCCT . 76.0 5.0 96.0 0.0 . 90 PPFIA3 8541 broad.mit.edu;bcgsc.ca 37 19 49636569 49636569 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PPFIA3 NM_003660 exon9 c.G1102A p.A368T CAGAAAGCGGAGA . 163.0 27.0 155.0 1.0 . 226 PPP4R1 9989 hgsc.bcm.edu;bcgsc.ca 37 18 9557375 9557375 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PPP4R1 NM_001042388 exon15 c.A2034G p.K678K TCGAACTTTCCAC . 78.0 4.0 94.0 0.0 . 227 PRAMEF19 645414 broad.mit.edu;bcgsc.ca 37 1 13475005 13475005 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001099790 exon3 c.G1124A p.R375H GAGCAGCGGCTCA . 909.0 227.0 1324.0 1.0 . . PREX2 80243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 69104651 69104651 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PREX2 NM_024870 exon37 c.G4495A p.A1499T GCCTGTGCAAACA . 68.0 17.0 73.0 0.0 . 390 PRF1 5551 hgsc.bcm.edu;bcgsc.ca 37 10 72357906 72357906 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRF1 NM_001083116 exon3 c.G1571T p.R524M AAGCACCTGGCAT . 79.0 6.0 88.0 0.0 . 578 PRKCH 5583 hgsc.bcm.edu;bcgsc.ca 37 14 61920071 61920071 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRKCH NM_006255 exon7 c.G960T p.S320S AACCTCGGTGAGA . 112.0 5.0 114.0 0.0 . 1063 PRKD1 5587 hgsc.bcm.edu;bcgsc.ca 37 14 30068321 30068321 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRKD1 NM_002742 exon15 c.C2078T p.A693V CGCAAAGCCACGA . 70.0 4.0 101.0 0.0 . 1534 PROM2 150696 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 95950732 95950732 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PROM2 NM_001165977 exon15 c.C1744T p.R582W AAGCTACGGCAGG . 136.0 46.0 199.0 1.0 . 91 PSD2 84249 hgsc.bcm.edu;bcgsc.ca 37 5 139189371 139189371 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PSD2 NM_032289 exon2 c.C346A p.P116T CTCTACCCAGATG . 113.0 5.0 64.0 0.0 . 91 PSMG1 8624 hgsc.bcm.edu;bcgsc.ca 37 21 40553799 40553799 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PSMG1 NM_203433 exon2 c.T140C p.V47A AGCCGCACTTCCC . 89.0 6.0 94.0 0.0 . 68 PTK2 5747 hgsc.bcm.edu;bcgsc.ca 37 8 141753415 141753415 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTK2 NM_005607 exon20 c.G1715T p.R572L ACATTCCGAGCAG . 91.0 4.0 76.0 0.0 . 1517 PTPN21 11099 hgsc.bcm.edu;bcgsc.ca 37 14 88974267 88974267 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPN21 NM_007039 exon4 c.G448A p.A150T ATTTACCTTGAAC . 79.0 4.0 95.0 0.0 . 230 PTPRF 5792 hgsc.bcm.edu;bcgsc.ca 37 1 44083444 44083444 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRF NM_002840 exon25 c.C4233A p.I1411I CTACATCGATGGC . 116.0 6.0 144.0 0.0 . 232 PTPRM 5797 hgsc.bcm.edu;bcgsc.ca 37 18 8378411 8378411 + Missense_Mutation SNP G G T rs202020478 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRM NM_001105244 exon27 c.G3611T p.R1204L AATTCCGGGTAAG . 87.0 4.0 156.0 0.0 G|0.999;A|0.001 228 PTPRS 5802 hgsc.bcm.edu;bcgsc.ca 37 19 5208037 5208037 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRS NM_002850 exon37 c.A5674G p.T1892A TAAGCGTGATGAA . 52.0 4.0 63.0 0.0 . 357 PTPRS 5802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 5216748 5216748 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRS NM_002850 exon26 c.C4079T p.P1360L AACCCCGGCTCCC . 369.0 69.0 460.0 0.0 . 357 PTS 5805 hgsc.bcm.edu;bcgsc.ca 37 11 112104184 112104184 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTS NM_000317 exon6 c.G344T p.W115L ATATCTGGGACAA . 93.0 5.0 114.0 0.0 . 90 PUF60 22827 hgsc.bcm.edu;bcgsc.ca 37 8 144904074 144904074 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_078480 exon3 c.T121C p.S41P TGATGGAGTCTGT . 61.0 4.0 61.0 0.0 . . RAB15 376267 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 14 65417736 65417736 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RAB15 NM_198686 exon4 c.C380A p.A127E CGCCTTGCCTTCC . 35.0 5.0 31.0 0.0 . 228 RADIL 55698 hgsc.bcm.edu;bcgsc.ca 37 7 4917718 4917718 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RADIL NM_018059 exon2 c.A53G p.K18R TGCCGCTTCAGTT . 83.0 4.0 98.0 0.0 . 994 RASA3 22821 hgsc.bcm.edu;bcgsc.ca 37 13 114780788 114780788 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RASA3 NM_007368 exon14 c.G1302A p.V434V GCGGTCCACATAC . 59.0 4.0 81.0 0.0 . 658 RBM14 10432 hgsc.bcm.edu;bcgsc.ca 37 11 66392968 66392968 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RBM14 NM_006328 exon2 c.C1621A p.R541S TCCTACCGCGGCC . 126.0 6.0 88.0 0.0 . 92 RLTPR 146206 hgsc.bcm.edu;bcgsc.ca 37 16 67679452 67679452 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RLTPR NM_001013838 exon2 c.C50T p.T17I AGATCACCAGGTT . 75.0 4.0 109.0 0.0 . 67 RMDN2 151393 hgsc.bcm.edu;bcgsc.ca 37 2 38178622 38178622 + Silent SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_144713 exon2 c.T264A p.A88A AAATGCTTCCCCT . 54.0 4.0 76.0 0.0 . . RNF112 7732 hgsc.bcm.edu;bcgsc.ca 37 17 19314770 19314770 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF112 NM_007148 exon1 c.A49G p.K17E CTTGGCAAACGGG . 28.0 4.0 35.0 0.0 . 92 RNF213 57674 hgsc.bcm.edu;bcgsc.ca 37 17 78341922 78341922 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF213 NM_001256071 exon44 c.C12134A p.P4045Q TCTCTCCAGCTGT . 110.0 5.0 138.0 0.0 . 577 RYR3 6263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 33855056 33855056 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RYR3 NM_001243996 exon11 c.G991T p.D331Y AAATTAGACTCCA . 86.0 30.0 120.0 0.0 . 520 SAA2-SAA4 100528017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 18253136 18253136 + Silent SNP C C A rs201938371 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001199744 exon6 c.G540T p.S180S GGACTTCGAGTCC . 111.0 28.0 169.0 0.0 C|0.999;T|0.000 . SACS 26278 hgsc.bcm.edu;bcgsc.ca 37 13 23908202 23908202 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SACS NM_014363 exon10 c.T9813C p.V3271V ATCAACAACAATG . 84.0 4.0 98.0 0.0 . 298 SATB1 6304 hgsc.bcm.edu;bcgsc.ca 37 3 18393620 18393620 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SATB1 NM_002971 exon10 c.A1643G p.N548S GAGAGGTTCTCCC . 146.0 6.0 220.0 0.0 . 228 SCN4A 6329 hgsc.bcm.edu;bcgsc.ca 37 17 62022891 62022891 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SCN4A NM_000334 exon19 c.C3549A p.A1183A CTTGCCGGCAAAC . 136.0 6.0 204.0 0.0 . 93 SEC16A 9919 hgsc.bcm.edu;bcgsc.ca 37 9 139370230 139370230 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_014866 exon3 c.C1838A p.P613Q TTTACCGGTTCGA . 51.0 4.0 84.0 0.0 . . SEC24C 9632 hgsc.bcm.edu;bcgsc.ca 37 10 75526220 75526220 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SEC24C NM_004922 exon13 c.T1720C p.S574P GTTGTGTCTGATG . 50.0 4.0 69.0 0.0 . 92 SECISBP2L 9728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 49320786 49320786 + Missense_Mutation SNP G G C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SECISBP2L NM_001193489 exon5 c.C758G p.P253R GCAGTAGGGTGGG . 140.0 50.0 218.0 0.0 . 136 SENP1 29843 hgsc.bcm.edu;bcgsc.ca 37 12 48491823 48491823 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP1 NM_001267594 exon3 c.C89T p.P30L GTTTGTGGCAGGA . 73.0 4.0 106.0 0.0 . 660 SENP1 29843 hgsc.bcm.edu;bcgsc.ca 37 12 48491866 48491866 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP1 NM_001267594 exon3 c.A46G p.T16A CTAAAGTCACTTC . 81.0 4.0 117.0 0.0 . 660 SENP2 59343 hgsc.bcm.edu;bcgsc.ca 37 3 185316214 185316214 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP2 NM_021627 exon3 c.C172A p.Q58K ATTCACCAAGTGA . 175.0 7.0 186.0 0.0 . 658 SERPINB3 6317 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 61324552 61324552 + Missense_Mutation SNP C C A rs150385073 byfrequency TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SERPINB3 NM_006919 exon6 c.G564T p.K188N AAATTTCTTCTCC . 852.0 227.0 955.0 1.0 C|0.997;A|0.003 228 SETD1A 9739 hgsc.bcm.edu;bcgsc.ca 37 16 30976649 30976649 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETD1A NM_014712 exon7 c.A1586G p.E529G GGAGTGAGGTGCC . 101.0 5.0 133.0 0.0 . 93 SETD8 387893 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 123880916 123880924 + In_Frame_Del DEL TCGCAAACT TCGCAAACT - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 TCGCAAACT TCGCAAACT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETD8 NM_020382 exon5 c.534_542del p.178_181del ACAGAATCGCAAA . 54.0 16.0 93.0 0.0 . 90 SGSM3 27352 hgsc.bcm.edu;bcgsc.ca 37 22 40803251 40803251 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SGSM3 NM_015705 exon12 c.G1287T p.T429T GCAGACGGAACTG . 94.0 6.0 113.0 0.0 . 494 SH3D19 152503 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 152060939 152060939 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SH3D19 NM_001009555 exon14 c.G1513A p.D505N GGAAATCATGAAG . 91.0 21.0 157.0 1.0 . 92 SHANK2 22941 hgsc.bcm.edu;bcgsc.ca 37 11 70332784 70332784 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHANK2 NM_133266 exon10 c.T1850C p.L617P CCTGTGAGTGGGT . 101.0 5.0 87.0 0.0 . 94 SHCBP1 79801 hgsc.bcm.edu;bcgsc.ca 37 16 46633834 46633834 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHCBP1 NM_024745 exon9 c.C1254A p.G418G GCCTTTGCCCCTC . 70.0 4.0 110.0 0.0 . 154 SHMT2 6472 hgsc.bcm.edu;bcgsc.ca 37 12 57627867 57627867 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHMT2 NM_005412 exon11 c.T1361C p.I454T TCAACATTGGCTT . 94.0 5.0 98.0 0.0 . 91 SIK3 23387 hgsc.bcm.edu;bcgsc.ca 37 11 116746722 116746722 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SIK3 NM_025164 exon9 c.T925C p.L309L ATCTTAATGACTA . 76.0 4.0 101.0 0.0 . 919 SLC12A5 57468 hgsc.bcm.edu;bcgsc.ca 37 20 44676618 44676618 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC12A5 NM_001134771 exon16 c.1977-2A>G . GCTCCCAGGGCAG . 42.0 4.0 60.0 0.0 . 156 SLC16A5 9121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73100204 73100204 + Silent SNP G G C rs141647560 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SLC16A5,brain,glioma,+2 SLC16A5 NM_001271765 exon6 c.G1293C p.A431A CGCGGCGGATGCC . 133.0 39.0 176.0 0.0 G|0.999;A|0.001 90 SLC22A23 63027 hgsc.bcm.edu;bcgsc.ca 37 6 3416016 3416016 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC22A23 NM_015482 exon2 c.G728A p.G243D AGGTAGCCAAAGA . 104.0 5.0 174.0 0.0 . 23 SLC26A6 65010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48669737 48669737 + Nonsense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC26A6 NM_022911 exon5 c.A526T p.R176X CATCTCTGGCTGT . 262.0 109.0 340.0 0.0 . 946 SLC51A 200931 hgsc.bcm.edu;bcgsc.ca 37 3 195944788 195944788 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_152672 exon2 c.A114G p.T38T TCCCACAGCAGCC . 43.0 5.0 85.0 0.0 . . SLC9C1 285335 hgsc.bcm.edu;bcgsc.ca 37 3 111985087 111985089 + In_Frame_Del DEL AAG AAG - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_183061 exon8 c.874_876del p.292_292del TTACTCAAGAAGA . 413.0 145.0 407.0 0.0 . . SLITRK2 84631 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 144906050 144906050 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLITRK2 NM_001144005 exon5 c.C2107A p.Q703K TACATGCAGAAGG . 101.0 23.0 114.0 1.0 . 136 SMARCA2 6595 hgsc.bcm.edu;bcgsc.ca 37 9 2056807 2056807 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SMARCA2 NM_139045 exon7 c.A1309G p.K437E CAGCAGAAGATTG . 65.0 4.0 107.0 0.0 . 653 SMARCC2 6601 broad.mit.edu;bcgsc.ca 37 12 56558092 56558093 + Frame_Shift_Ins INS - - GT novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 - - . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SMARCC2 NM_003075 exon27 c.3563_3564insAC p.L1188fs CCTGGCAGTGGGC . 28.0 8.0 48.0 0.0 . 229 SNAP91 9892 hgsc.bcm.edu;bcgsc.ca 37 6 84300973 84300973 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SNAP91 NM_001242792 exon21 c.T1971C p.S657S AGCCTGAGATGCA . 44.0 4.0 87.0 0.0 . 23 SNX12 29934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70282707 70282707 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SNX12 NM_001256185 exon3 c.C258T p.S86S TACCTTGCTATCT . 87.0 19.0 128.0 0.0 . 226 SPACA3 124912 hgsc.bcm.edu;bcgsc.ca 37 17 31323887 31323887 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPACA3 NM_173847 exon3 c.G370T p.G124C ACAAGCGGTTTCA . 123.0 5.0 141.0 0.0 . 92 SPATA16 83893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 172835323 172835323 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPATA16 NM_031955 exon2 c.A199G p.K67E TGCCCTTTGTCAT . 1219.0 190.0 696.0 0.0 . 94 SPATA5L1 79029 hgsc.bcm.edu;bcgsc.ca 37 15 45713246 45713246 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPATA5L1 NM_024063 exon8 c.T2100C p.A700A GGCTGCTTTGCTG . 60.0 4.0 43.0 0.0 . 94 SPECC1 92521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 20107661 20107661 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPECC1 NM_001033553 exon4 c.C299G p.T100S CAACAACTAAACG . 63.0 26.0 102.0 0.0 . 639 SPG11 80208 hgsc.bcm.edu;bcgsc.ca 37 15 44876208 44876208 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPG11 NM_025137 exon30 c.T5670C p.C1890C ATGCACACAGCCA . 98.0 5.0 102.0 0.0 . 95 SPN 6693 hgsc.bcm.edu;bcgsc.ca 37 16 29675060 29675060 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPN NM_001030288 exon2 c.T11C p.L4P CCACGCTTCTCCT . 104.0 5.0 122.0 0.0 . 514 SPRR2A 6700 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 153029108 153029108 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPRR2A NM_005988 exon2 c.C104A p.P35H GGGCAGGGCTCAG . 183.0 34.0 183.0 0.0 . 69 SRPX 8406 hgsc.bcm.edu;bcgsc.ca 37 X 38013812 38013812 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SRPX NM_006307 exon9 c.C1114A p.R372R TGTGTCGAAGATC . 81.0 4.0 79.0 0.0 . 130 SRRM2 23524 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2812361 2812361 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SRRM2 NM_016333 exon11 c.G1832T p.R611L CAGCCCGGAGGGG . 54.0 5.0 89.0 0.0 . 93 SRSF11 9295 hgsc.bcm.edu;bcgsc.ca 37 1 70710417 70710417 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SRSF11 NM_001190987 exon9 c.G851T p.R284L GGAGTCGGCGACG . 115.0 5.0 129.0 0.0 . 227 STBD1 8987 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 77230621 77230621 + Missense_Mutation SNP G G T rs147970715 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STBD1 NM_003943 exon2 c.G545T p.R182I AGAACAGAGCTAA . 128.0 34.0 150.0 1.0 G|0.999;A|0.001 69 STK38L 23012 hgsc.bcm.edu;bcgsc.ca 37 12 27475143 27475143 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STK38L NM_015000 exon13 c.C1243T p.P415S GACTTCCCTGAAT . 58.0 5.0 75.0 0.0 . 980 STX19 415117 hgsc.bcm.edu;bcgsc.ca 37 3 93733245 93733245 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STX19 NM_001001850 exon2 c.G869A p.C290Y CTACAGCATGGAC . 84.0 5.0 99.0 0.0 . 90 SWI5 375757 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131038431 131038431 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001040011 exon1 c.C7T p.R3W ATGCAGCGGCGTG . 49.0 17.0 61.0 1.0 . . SYNE2 23224 hgsc.bcm.edu;bcgsc.ca 37 14 64641845 64641845 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SYNE2 NM_182914 exon95 c.A17419G p.S5807G TTCCAGAGCACTG . 113.0 5.0 88.0 0.0 . 164 TAF15 8148 hgsc.bcm.edu;bcgsc.ca 37 17 34171487 34171487 + Missense_Mutation SNP G G T rs71381481 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TAF15 NM_139215 exon15 c.G1184T p.R395L ATTTCCGGGGGAG . 182.0 8.0 158.0 0.0 G|0.999;A|0.001 723 TAS2R43 259289 hgsc.bcm.edu;bcgsc.ca 37 12 11244577 11244577 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TAS2R43 NM_176884 exon1 c.T252C p.A84A ATTATAAGCAGTA . 107.0 6.0 152.0 0.0 . 1 TBC1D5 9779 hgsc.bcm.edu;bcgsc.ca 37 3 17333464 17333464 + Missense_Mutation SNP C C A rs143029277 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TBC1D5 NM_014744 exon15 c.G1168T p.G390C GAAGGCCGAGACA . 72.0 4.0 103.0 0.0 C|1.000;T|0.000 91 TCF3 6929 hgsc.bcm.edu;bcgsc.ca 37 19 1611812 1611812 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCF3 NM_003200 exon19 c.G1859T p.R620L TCTCGCCGTTTCA . 122.0 5.0 168.0 0.0 . 721 TCIRG1 10312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 67818045 67818045 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCIRG1 NM_006019 exon19 c.C2328A p.I776I CCCCATCTTTGCC . 386.0 167.0 433.0 1.0 . 227 TDRD9 122402 hgsc.bcm.edu;bcgsc.ca 37 14 104470585 104470585 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TDRD9 NM_153046 exon14 c.A1494G p.G498G TGCTGGACGAGTG . 91.0 4.0 137.0 0.0 . 70 TEKT1 83659 hgsc.bcm.edu;bcgsc.ca 37 17 6716342 6716342 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TEKT1 NM_053285 exon6 c.C660A p.F220L GCTGGAGAAGTCC . 65.0 4.0 95.0 0.0 . 92 TENM2 57451 hgsc.bcm.edu;bcgsc.ca 37 5 167689229 167689229 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001122679 exon29 c.G7712T p.R2571L AAGGGCGGGTGAC . 89.0 6.0 115.0 0.0 . . TET2 54790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 106155605 106155605 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TET2 NM_001127208 exon3 c.A506T p.H169L CAACACATAACTG . 149.0 43.0 220.0 0.0 . 4618 TEX14 56155 hgsc.bcm.edu;bcgsc.ca 37 17 56690838 56690838 + Missense_Mutation SNP G G T rs150820263 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TEX14,NS,carcinoma,+1 TEX14 NM_001201457 exon9 c.C967A p.R323S CAAGGCGGGTTTT . 144.0 7.0 198.0 1.0 G|1.000;A|0.000 810 TGM2 7052 ucsc.edu;bcgsc.ca 37 20 36769692 36769692 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TGM2 NM_198951 exon8 c.A1091G p.K364R TCGCTCTTCTCCT . 32.0 4.0 65.0 0.0 . 155 TIAM1 7074 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 21 32639202 32639202 + Silent SNP G G T rs139712298 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TIAM1 NM_003253 exon5 c.C87A p.S29S GCGCAGGGAGCGG . 41.0 4.0 87.0 0.0 G|0.999;A|0.001 724 TMEM30A 55754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 75970580 75970580 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM30A NM_018247 exon4 c.A501G p.P167P AGCAATTGGTTTG . 189.0 69.0 263.0 0.0 . 90 TMPRSS11BNL 401136 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 69078095 69078095 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001129907 exon2 c.C109A p.H37N GAAAATGAACAAG . 306.0 89.0 437.0 0.0 . . TNRC6C 57690 hgsc.bcm.edu;bcgsc.ca 37 17 76046560 76046560 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNRC6C NM_018996 exon4 c.G1417A p.D473N AAAAATGACAATG . 76.0 4.0 99.0 0.0 . 24 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32038106 32038106 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNXB NM_019105 exon14 c.C5076A p.L1692L CCAGGAGAGGCGC . 166.0 31.0 187.0 0.0 . 90 TOM1L2 146691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 17801962 17801962 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TOM1L2 NM_001033551 exon3 c.A164G p.K55R CGCTTCTTCAGGG . 295.0 119.0 314.0 1.0 . 90 TPH2 121278 hgsc.bcm.edu;bcgsc.ca 37 12 72416258 72416258 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TPH2 NM_173353 exon9 c.C1148A p.S383Y TTTCCTCCATTGG . 74.0 4.0 111.0 0.0 . 93 TRIM59 286827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 160155954 160155954 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRIM59 NM_173084 exon3 c.G1018C p.V340L GTATTACTGAAAT . 271.0 85.0 299.0 0.0 . 658 TRIM66 9866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 8642090 8642090 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRIM66 NM_014818 exon16 c.G3047A p.S1016N GTCAGGCTGCGGC . 132.0 34.0 167.0 0.0 . 68 TSC1 7248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135779080 135779080 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSC1 NM_000368 exon17 c.G2166T p.K722N GATCACCTTGCGG . 82.0 33.0 94.0 0.0 . 1906 TSHZ1 10194 hgsc.bcm.edu;bcgsc.ca 37 18 72999514 72999514 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSHZ1 NM_005786 exon2 c.C2017A p.P673T ACAGAGCCTCTCA . 64.0 4.0 85.0 0.0 . 90 TTC40 54777 hgsc.bcm.edu;bcgsc.ca 37 10 134694527 134694527 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001200049 exon28 c.A3637G p.M1213V ACTCCATCTCAGG . 51.0 4.0 91.0 0.0 . . TTN 7273 hgsc.bcm.edu;bcgsc.ca 37 2 179577619 179577619 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TTN NM_001267550 exon94 c.A27133G p.T9045A GAGGTGTTCCTTT . 84.0 4.0 59.0 0.0 . 636 TUFM 7284 hgsc.bcm.edu;bcgsc.ca 37 16 28856082 28856082 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TUFM,NS,carcinoma,-2 TUFM NM_003321 exon5 c.C621A p.T207T AAACTCGGTGAGC . 100.0 4.0 126.0 0.0 . 91 UBR4 23352 hgsc.bcm.edu;bcgsc.ca 37 1 19433073 19433073 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBR4 NM_020765 exon83 c.G12383T p.W4128L CGCAGCCAGTTGT . 30.0 4.0 46.0 0.0 . 612 UBR4 23352 hgsc.bcm.edu;bcgsc.ca 37 1 19501462 19501462 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBR4 NM_020765 exon21 c.C2839A p.R947R CAAGTCGGTTCAA . 109.0 5.0 133.0 0.0 . 612 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19407897 19407897 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBR4 NM_020765 exon103 c.G15179A p.R5060Q AGCCTCCGCAAGA . 103.0 11.0 94.0 0.0 . 612 UBXN6 80700 hgsc.bcm.edu;bcgsc.ca 37 19 4448329 4448329 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBXN6 NM_025241 exon5 c.G525T p.V175V GGTGTCCACACCC . 65.0 4.0 71.0 0.0 . 90 UNC79 57578 hgsc.bcm.edu;bcgsc.ca 37 14 94158258 94158258 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_020818 exon47 c.C7022A p.P2341H TGACACCCAGCAT . 138.0 8.0 173.0 0.0 . . USP20 10868 hgsc.bcm.edu;bcgsc.ca 37 9 132642472 132642472 + Missense_Mutation SNP C C A rs200854092 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP20 NM_001008563 exon25 c.C2665A p.R889S GCCATCCGCCAGA . 50.0 4.0 112.0 0.0 C|0.999;T|0.000 658 USP31 57478 hgsc.bcm.edu;bcgsc.ca 37 16 23091273 23091273 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP31 NM_020718 exon13 c.T2170C p.Y724H CTGTGTAGTGCCC . 75.0 4.0 116.0 0.0 . 663 USP31 57478 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23080459 23080459 + Silent SNP G G T rs201814190 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP31 NM_020718 exon16 c.C2967A p.I989I ATAAGCGATCTGA . 27.0 4.0 50.0 0.0 G|0.999;A|0.000 663 USP39 10713 broad.mit.edu;ucsc.edu 37 2 85843340 85843340 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP39 NM_001256725 exon1 c.G22A p.E8K AAGCGGGAGTCTC . 68.0 12.0 53.0 2.0 . 658 USP7 7874 hgsc.bcm.edu;bcgsc.ca 37 16 9015082 9015082 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP7 NM_003470 exon4 c.C454A p.R152S TACGACGACTGAA . 134.0 7.0 148.0 0.0 . 661 VILL 50853 hgsc.bcm.edu;bcgsc.ca 37 3 38044030 38044030 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VILL NM_015873 exon13 c.G1623T p.L541L CTTGCTGGTCACA . 119.0 7.0 87.0 0.0 . 90 VNN2 8875 hgsc.bcm.edu;bcgsc.ca 37 6 133071001 133071001 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VNN2 NM_004665 exon6 c.T1204C p.C402R GTGTGCAGACCTA . 93.0 4.0 115.0 0.0 . 90 VPS13C 54832 hgsc.bcm.edu;bcgsc.ca 37 15 62202491 62202491 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS13C NM_020821 exon64 c.G8729T p.W2910L TCTGGCCAAAATG . 78.0 4.0 100.0 0.0 . 92 VPS13D 55187 hgsc.bcm.edu;bcgsc.ca 37 1 12516140 12516140 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS13D NM_015378 exon66 c.C12420A p.A4140A TGCAGCCACAAGT . 62.0 4.0 84.0 0.0 . 95 VPS25 84313 hgsc.bcm.edu;bcgsc.ca 37 17 40928289 40928289 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS25 NM_032353 exon5 c.C369A p.S123S CAACTCCGTCTTT . 121.0 5.0 174.0 0.0 . 90 VPS33B 26276 hgsc.bcm.edu;bcgsc.ca 37 15 91549273 91549273 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS33B NM_018668 exon12 c.G869A p.R290Q TCGTTCCGAATCT . 110.0 5.0 113.0 0.0 . 92 VPS37A 137492 hgsc.bcm.edu;bcgsc.ca 37 8 17126365 17126365 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS37A NM_152415 exon4 c.T316C p.F106L TTTCAGTTTACAA . 79.0 4.0 117.0 0.0 . 90 WASF1 8936 hgsc.bcm.edu;bcgsc.ca 37 6 110426738 110426738 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WASF1 NM_001024935 exon7 c.A585G p.R195R AGGTGCTCTTGGC . 95.0 4.0 103.0 0.0 . 90 WBSCR17 64409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 70880904 70880904 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WBSCR17 NM_022479 exon4 c.G619A p.V207I GAGTATGTCCACA . 86.0 21.0 154.0 0.0 . 96 WDR7 23335 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 54349915 54349915 + Frame_Shift_Del DEL C C - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR7 NM_052834 exon5 c.351delC p.Y117fs GTTCTACCAGTTC . 167.0 41.0 223.0 0.0 . 93 WDTC1 23038 hgsc.bcm.edu;bcgsc.ca 37 1 27627864 27627864 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDTC1 NM_001276252 exon13 c.A1380G p.K460K CTTCAAAGGGAAA . 74.0 4.0 116.0 0.0 . 91 WFIKKN2 124857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48913333 48913333 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WFIKKN2 NM_175575 exon1 c.G35A p.R12H GGTCTCGCTGGGA . 110.0 41.0 127.0 0.0 . 93 XIRP1 165904 hgsc.bcm.edu;bcgsc.ca 37 3 39229162 39229162 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . XIRP1 NM_001198621 exon2 c.A1775G p.Q592R ATGGTCTGCACAT . 134.0 8.0 189.0 0.0 . 158 XPO6 23214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28167437 28167437 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . XPO6 NM_015171 exon7 c.A1055T p.N352I TGGGCATTGTTAT . 544.0 173.0 773.0 0.0 . 227 ZDHHC1 29800 hgsc.bcm.edu;bcgsc.ca 37 16 67432186 67432186 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZDHHC1 NM_013304 exon8 c.C856A p.R286S GTGGGCGGTGCTG . 61.0 4.0 78.0 0.0 . 90 ZIC3 7547 hgsc.bcm.edu;bcgsc.ca 37 X 136649847 136649847 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZIC3 NM_003413 exon1 c.C997A p.P333T CCCTTCCCGGGCT . 125.0 5.0 199.0 0.0 . 195 ZNF107 51427 hgsc.bcm.edu;bcgsc.ca 37 7 64166707 64166707 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF107 NM_016220 exon7 c.T25C p.S9P GTAATGTCTTTTC . 63.0 4.0 78.0 0.0 . 69 ZNF132 7691 hgsc.bcm.edu;bcgsc.ca 37 19 58945140 58945140 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF132 NM_003433 exon3 c.T1671C p.T557T AATGAGAGTGGAG . 91.0 4.0 166.0 0.0 . 92 ZNF229 7772 hgsc.bcm.edu;bcgsc.ca 37 19 44934658 44934658 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF229 NM_014518 exon6 c.C298A p.H100N CTTTGTGTGAAAA . 95.0 4.0 118.0 0.0 . 94 ZNF248 57209 hgsc.bcm.edu;bcgsc.ca 37 10 38126943 38126943 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF248 NM_001267606 exon2 c.C112A p.L38M TTTCCAGGATCAC . 96.0 4.0 148.0 0.0 . 91 ZNF33B 7582 hgsc.bcm.edu;bcgsc.ca 37 10 43088543 43088543 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF33B NM_006955 exon5 c.T1855C p.C619R TCTGGCAGAAGGT . 121.0 5.0 129.0 0.0 . 90 ZNF341 84905 hgsc.bcm.edu;bcgsc.ca 37 20 32328755 32328755 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF341 NM_032819 exon2 c.C79A p.Q27K GATGGCCAAGGAG . 55.0 4.0 105.0 0.0 . 92 ZNF346 23567 hgsc.bcm.edu;bcgsc.ca 37 5 176477805 176477805 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF346 NM_012279 exon5 c.C571T p.H191Y CTCTGCCATGCAA . 71.0 4.0 129.0 0.0 . 90 ZNF354C 30832 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 178506014 178506014 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF354C NM_014594 exon5 c.G581T p.G194V CATTTGGGAAAGA . 70.0 5.0 71.0 0.0 . 91 ZNF429 353088 hgsc.bcm.edu;bcgsc.ca 37 19 21712459 21712459 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF429 NM_001001415 exon2 c.4-1G>T . GTTTCAGGGACCA . 59.0 4.0 109.0 0.0 . 516 ZNF521 25925 hgsc.bcm.edu;bcgsc.ca 37 18 22806400 22806400 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF521,NS,carcinoma,-2 ZNF521 NM_015461 exon4 c.A1482G p.E494E GATGTGTTCCTGA . 135.0 6.0 183.0 0.0 . 275 ZNF585B 92285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37677107 37677107 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF585B NM_152279 exon5 c.G1332A p.G444G CAATTTCCCACAG . 198.0 61.0 243.0 0.0 . 91 ZNF655 79027 hgsc.bcm.edu;bcgsc.ca 37 7 99169920 99169920 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF655 NM_001085368 exon4 c.G294T p.S98S AATTTCGGAAGAA . 123.0 5.0 64.0 0.0 . 91 ZNF675 171392 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 23836432 23836432 + Silent SNP G G T rs199957959 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF675 NM_138330 exon4 c.C1303A p.R435R AGGATCGGTTAAA . 33.0 4.0 54.0 0.0 G|0.999;A|0.001 228 ZNF75A 7627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3367499 3367499 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF75A NM_153028 exon6 c.C521G p.S174C TTAGCTCTGACCT . 199.0 62.0 220.0 0.0 . 153 ZNF839 55778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102805186 102805186 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF839 NM_018335 exon6 c.C1693A p.R565R TTCCTACGGAAGA . 149.0 35.0 217.0 0.0 . 91 ZNF841 284371 hgsc.bcm.edu;bcgsc.ca 37 19 52569527 52569527 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001136499 exon7 c.C1608A p.T536T CTCTCCGGTATGA . 79.0 4.0 74.0 0.0 . . ZNF841 284371 hgsc.bcm.edu;bcgsc.ca 37 19 52570470 52570470 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001136499 exon7 c.C665A p.P222Q TGAAGTGGTGAAG . 76.0 4.0 103.0 0.0 . . ZNF85 7639 hgsc.bcm.edu;bcgsc.ca 37 19 21132473 21132473 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF85 NM_001256171 exon5 c.C1243A p.L415I TCACACCTTACTA . 72.0 4.0 82.0 0.0 . 514