Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	20785063	20785063	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ABCB5	NM_001163941	exon26	c.3429+2T>A	.	CTGAGGTAAGAAA	.	72.0	37.0	64.0	0.0	.	158
ACTL7A	10881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111625276	111625276	+	Missense_Mutation	SNP	A	A	G	rs112558776	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ACTL7A	NM_006687	exon1	c.A674G	p.Y225C	TGTCCTACGTGGT	.	47.0	18.0	44.0	0.0	A|0.500;C|0.500	90
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128887587	128887587	+	Silent	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ADAMTS19	NM_133638	exon7	c.A1341C	p.P447P	TGAACCATGTGAT	.	105.0	36.0	76.0	0.0	.	295
ADCY5	111	broad.mit.edu;mdanderson.org	37	3	123166435	123166435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ADCY5	NM_183357	exon1	c.C958A	p.P320T	GCTGCGGCAGCAG	.	25.0	7.0	35.0	1.0	.	94
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21249795	21249795	+	Silent	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	APOB	NM_000384	exon15	c.T2109C	p.A703A	AAAAAGAGCTTCC	.	150.0	78.0	212.0	0.0	.	175
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	119134792	119134792	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ARHGAP31	NM_020754	exon12	c.C4016A	p.S1339X	ACAGGTCAAGGCC	.	85.0	31.0	98.0	0.0	.	92
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219114171	219114171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ARPC2	NM_005731	exon8	c.A761G	p.H254R	ACTACCACATCAA	.	45.0	18.0	55.0	0.0	.	91
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17921966	17921967	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ASAH1	NM_004315	exon6	c.505_506insA	p.G169fs	AATTACCTTTTTT	.	45.0	18.0	68.0	0.0	.	90
CAMKMT	79823	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44993577	44993577	+	Silent	SNP	G	G	T	rs201420188	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CAMKMT	NM_024766	exon10	c.G771T	p.A257A	GAAAGCGATGGTA	.	100.0	55.0	151.0	1.0	G|0.999;A|0.001	90
CD6	923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60774061	60774061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CD6	NM_006725	exon2	c.C65T	p.A22V	CTCCAGCCCCACC	.	36.0	13.0	45.0	0.0	.	227
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10506763	10506763	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CDC37	NM_007065	exon2	c.G219A	p.V73V	CTCGGCCACCTCC	.	95.0	31.0	87.0	0.0	.	522
CDHR3	222256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105662822	105662822	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CDHR3	NM_152750	exon14	c.T2004C	p.V668V	TCTTGTTGAGACA	.	190.0	87.0	203.0	0.0	.	23
CEP104	9731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3753156	3753156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CEP104	NM_014704	exon10	c.A1220G	p.D407G	CGAGCATCGCTGA	.	37.0	10.0	39.0	0.0	.	92
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7798720	7798720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CHD3	NM_001005271	exon10	c.G1744A	p.A582T	CCTGTAGCAGTGC	.	61.0	32.0	88.0	0.0	.	228
CHST3	9469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73768075	73768075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CHST3	NM_004273	exon3	c.G1286A	p.R429H	AGTGGCGCTTCAG	.	76.0	37.0	66.0	1.0	.	90
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150912332	150912332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CNGA2	NM_005140	exon7	c.C1357T	p.R453C	AAAGTGCGCATCT	.	116.0	37.0	75.0	1.0	.	193
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83984336	83984336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	COPS4	NM_016129	exon7	c.G823A	p.G275R	ATCAGAGGAAATC	.	99.0	53.0	130.0	0.0	.	226
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17091417	17091417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CPAMD8	NM_015692	exon14	c.G1616A	p.G539D	ATATTGCCCCGTG	.	89.0	40.0	89.0	0.0	.	141
CTNNBL1	56259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	36431330	36431330	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CTNNBL1	NM_030877	exon11	c.G1093T	p.E365X	GGCCCCGAAGGCA	.	150.0	68.0	154.0	0.0	.	228
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176899177	176899177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DBN1	NM_080881	exon2	c.T35C	p.L12P	CTGGCCAGTGCTG	.	103.0	48.0	112.0	0.0	.	587
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38838323	38838323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DNAH8	NM_001206927	exon49	c.C6975A	p.N2325K	CTGGAACCTGAAA	.	56.0	36.0	48.0	0.0	.	615
DONSON	29980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34958454	34958454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DONSON	NM_017613	exon3	c.C436A	p.P146T	AGGACGGAATATC	.	126.0	40.0	208.0	0.0	.	91
ELAVL3	1995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11577461	11577461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ELAVL3	NM_032281	exon2	c.A191G	p.D64G	TCGATGTCGCCAA	.	87.0	44.0	67.0	0.0	.	92
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	5419718	5419718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	EPB41L3	NM_012307	exon12	c.G1498T	p.E500X	TTCCCTCGTGCCG	.	39.0	23.0	42.0	0.0	.	95
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65767551	65767551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	EYS	NM_001142800	exon13	c.A2093G	p.D698G	GGTTGGTCAATGC	.	241.0	150.0	257.0	0.0	.	660
FAM189A1	23359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29429365	29429365	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FAM189A1	NM_015307	exon6	c.C663T	p.P221P	GCAGGTGGGGTTG	.	44.0	29.0	54.0	0.0	.	22
FBXL7	23194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928320	15928320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FBXL7	NM_012304	exon3	c.A449G	p.D150G	CCTGGGACCCGCG	.	56.0	22.0	50.0	2.0	.	228
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123276885	123276885	+	Silent	SNP	C	C	T	rs121918491		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FGFR2	NM_000141	exon8	c.G1032A	p.A344A	ATTACCCGCCAAG	.	46.0	41.0	78.0	0.0	.	2607
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67147861	67147861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GPHN	NM_001024218	exon2	c.G101A	p.R34H	AAGACCGCAGTGG	.	92.0	47.0	93.0	0.0	.	228
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	47033858	47033858	+	Splice_Site	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GRAMD4	NM_015124	exon2	c.283+1G>C	.	TCTTACGTGAGTA	.	81.0	7.0	114.0	0.0	.	23
GUCA2B	2981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42620502	42620502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GUCA2B	NM_007102	exon2	c.C242T	p.A81V	TCTGCGCCTCGCA	.	123.0	85.0	112.0	0.0	.	90
HEMK1	51409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50609148	50609148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HEMK1	NM_016173	exon3	c.G236A	p.S79N	TTCAGAGCCTGAG	.	56.0	33.0	77.0	0.0	.	278
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26233251	26233251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HNRNPA2B1	NM_031243	exon9	c.C821A	p.P274H	TATCCAGGTCCTC	.	82.0	5.0	78.0	0.0	.	70
HSPH1	10808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	31715296	31715296	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HSPH1	NM_006644	exon13	c.T1817G	p.L606X	TTCCCTAACTGCC	.	106.0	52.0	96.0	0.0	.	90
IL4	3565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132009824	132009824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	IL4	NM_172348	exon1	c.G82C	p.D28H	AAGTGCGATATCA	.	66.0	30.0	63.0	0.0	.	90
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196274416	196274416	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KCNT2	NM_198503	exon22	c.T2543G	p.M848R	AATTGCATGAATC	.	167.0	58.0	113.0	0.0	.	159
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	36788612	36788612	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KCNU1	NM_001031836	exon25	c.G2880T	p.R960R	AAACCGGTGTAAG	.	149.0	63.0	146.0	0.0	.	23
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56918222	56918222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KIAA1586	NM_020931	exon4	c.G925A	p.E309K	ATTATAGAAGAGA	.	78.0	44.0	127.0	0.0	.	44
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5968170	5968170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KIAA2026	NM_001017969	exon3	c.G2061T	p.K687N	TTTTTTCTTTTTC	.	76.0	37.0	89.0	0.0	.	92
KLHL2	11275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166238988	166238988	+	Silent	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KLHL2	NM_001161521	exon14	c.A1632G	p.A544A	TTGTGCAGTTAAT	.	95.0	33.0	134.0	0.0	.	226
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39595474	39595474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KRT38	NM_006771	exon3	c.T713A	p.L238H	CTCTTGAGGGAGA	.	28.0	12.0	55.0	0.0	.	92
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130381199	130381199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	L3MBTL3	NM_032438	exon10	c.A778T	p.N260Y	CCATATAACAAAA	.	96.0	24.0	135.0	0.0	.	96
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60895866	60895866	+	Missense_Mutation	SNP	G	G	C	rs143165168	byfrequency;alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LAMA5	NM_005560	exon49	c.C6577G	p.R2193G	TGCCACGCAGTTG	.	141.0	48.0	171.0	1.0	G|1.000;A|0.000	93
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85521764	85521764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LRRIQ1	NM_001079910	exon18	c.A4162G	p.I1388V	GAAAATATTGTGA	.	285.0	137.0	249.0	0.0	.	95
LRTM2	654429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1943454	1943454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LRTM2	NM_001039029	exon5	c.C680T	p.A227V	AGCTTGCCTGCAC	.	31.0	16.0	27.0	0.0	.	135
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71493321	71493321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MAP1B	NM_005909	exon5	c.T4139A	p.M1380K	GCCCCATGGATGA	.	134.0	50.0	108.0	0.0	.	155
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42052603	42052603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MGA	NM_001164273	exon20	c.G7274A	p.R2425H	ATTATCGCCGGAC	.	121.0	77.0	129.0	0.0	.	522
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154860094	154860094	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MME	NM_007287	exon12	c.A1163T	p.K388M	CCTACAAGGAGTC	.	96.0	26.0	129.0	0.0	.	516
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58074513	58074513	+	Missense_Mutation	SNP	A	A	G	rs147717123		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MMP15	NM_002428	exon5	c.A821G	p.N274S	ACCCCAATGCCAT	.	32.0	24.0	71.0	0.0	A|1.000;G|0.000	713
MPHOSPH10	10199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71360572	71360572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MPHOSPH10	NM_005791	exon2	c.G634T	p.A212S	ATGGAGGCCTATT	.	161.0	91.0	278.0	0.0	.	93
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35806707	35806707	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NBEA	NM_015678	exon34	c.C5727T	p.F1909F	CCCATTCCTATCT	.	145.0	67.0	123.0	0.0	.	144
NLGN3	54413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70387139	70387139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NLGN3	NM_181303	exon7	c.A1192C	p.N398H	TTCCTCAACTATG	.	171.0	85.0	184.0	1.0	.	131
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56223263	56223263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NLRP9	NM_176820	exon8	c.A2746T	p.R916W	GGCTCCTCAGTGT	.	80.0	47.0	69.0	0.0	.	294
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100104411	100104411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NOX1	NM_007052	exon11	c.A1301G	p.Y434C	TAGAAATAGATCT	.	130.0	57.0	129.0	0.0	.	131
NOX3	50508	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	155750073	155750073	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NOX3	NM_015718	exon9	c.G1000T	p.E334X	GCCACTCCAGCGA	.	72.0	51.0	127.0	1.0	.	91
NXPE3	91775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101520122	101520122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_145037	exon5	c.G137A	p.S46N	ACAGCAGTGGACA	.	180.0	51.0	229.0	0.0	.	.
OR10H4	126541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16059854	16059854	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	OR10H4	NM_001004465	exon1	c.A37T	p.N13Y	GAATTTAACCTCT	.	82.0	38.0	73.0	0.0	.	114
OR10R2	343406	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158449817	158449817	+	Silent	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	OR10R2	NM_001004472	exon1	c.T150A	p.V50V	TGTAGTTTTTCTT	.	148.0	61.0	104.0	2.0	.	161
PARP9	83666	ucsc.edu;bcgsc.ca	37	3	122271265	122271265	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PARP9	NM_031458	exon5	c.G1212A	p.Q404Q	ACTTACCTGAGGT	.	106.0	65.0	156.0	2.0	.	525
PCDHA13	56136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140262349	140262349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PCDHA13	NM_031865	exon1	c.T496A	p.S166T	GTAAACTCGGCAT	.	139.0	70.0	144.0	0.0	.	75
PCDHB4	56131	broad.mit.edu;bcgsc.ca	37	5	140502767	140502767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PCDHB4	NM_018938	exon1	c.T1187C	p.L396S	CAACTTTGAAGAA	.	112.0	50.0	88.0	2.0	.	93
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140794859	140794859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_032090	exon1	c.G2117T	p.C706F	TCTCCTGCGTCTT	.	113.0	57.0	113.0	0.0	.	.
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31918700	31918700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PDE1C	NM_001191058	exon5	c.C514T	p.R172W	TCTGCCGCGTGAA	.	50.0	23.0	42.0	0.0	.	94
PHF7	51533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52448577	52448577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PHF7	NM_016483	exon4	c.A160G	p.N54D	AAAGACAATATCA	.	85.0	45.0	105.0	0.0	.	153
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	19436617	19436617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PLEKHA5	NM_001256470	exon12	c.T1717C	p.S573P	GAAGTGTCTTCAC	.	78.0	33.0	73.0	0.0	.	227
POPDC3	64208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105606476	105606476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	POPDC3	NM_022361	exon4	c.A745G	p.R249G	ATACCCTGTCATT	.	138.0	83.0	156.0	0.0	.	519
RAB33A	9363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	129306277	129306277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RAB33A	NM_004794	exon1	c.G241T	p.E81X	GAAATCGAGGGCG	.	48.0	17.0	61.0	0.0	.	227
RANGAP1	5905	hgsc.bcm.edu;bcgsc.ca	37	22	41650402	41650402	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RANGAP1	NM_002883	exon11	c.G1170A	p.E390E	CTCCTCCTCTTCT	.	47.0	5.0	50.0	0.0	.	90
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48951053	48951053	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	RB1,NS,carcinoma,0	RB1	NM_000321	exon13	c.1216-1G>A	.	CCTAAAGAACTGC	.	62.0	54.0	105.0	0.0	.	3784
RNASE1	6035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21270068	21270068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RNASE1	NM_198235	exon3	c.T160C	p.C54R	GGTTACAGTAGGT	.	52.0	22.0	49.0	0.0	.	90
RORB	6096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	77286750	77286752	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RORB	NM_006914	exon9	c.1157_1159del	p.386_387del	TTCAGGAAAAAAT	.	292.0	120.0	248.0	0.0	.	229
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20181160	20181160	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RPS6KA3	NM_004586	exon20	c.1765-2A>T	.	AAAACCTAGAAAA	.	213.0	108.0	208.0	0.0	.	1504
SCGB2A2	4250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62038372	62038372	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SCGB2A2	NM_002411	exon2	c.G75A	p.L25L	CTTATTGGAGAAT	.	90.0	38.0	62.0	0.0	.	91
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167149749	167149749	+	Missense_Mutation	SNP	A	A	T	rs200457046	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SCN9A	NM_002977	exon9	c.T1099A	p.Y367N	GTTGGTAAAGGTT	.	85.0	30.0	96.0	0.0	.	181
SEZ6	124925	ucsc.edu;bcgsc.ca	37	17	27309008	27309008	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SEZ6	NM_001098635	exon2	c.C105A	p.I35I	CTCCTCGATGCCT	.	35.0	4.0	30.0	0.0	.	90
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86370519	86370519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SLITRK6	NM_032229	exon2	c.G125C	p.G42A	ATTGTGCCATCTT	.	74.0	61.0	131.0	0.0	.	137
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11132515	11132515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SMARCA4	NM_003072	exon19	c.G2731A	p.G911S	CTGACGGGCACAC	.	58.0	20.0	51.0	0.0	.	1523
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56397423	56397423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SUOX	NM_000456	exon6	c.A250G	p.I84V	ACACACATATACA	.	71.0	25.0	97.0	0.0	.	90
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	29812533	29812533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SVIL	NM_021738	exon15	c.G3010A	p.A1004T	GGTTCGCCCGTTC	.	98.0	52.0	109.0	0.0	.	96
TBX18	9096	ucsc.edu;bcgsc.ca	37	6	85446614	85446614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TBX18	NM_001080508	exon8	c.C1613T	p.P538L	AGTTTGGGGGATG	.	130.0	77.0	153.0	2.0	.	73
TFE3	7030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48888982	48888982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TFE3	NM_006521	exon9	c.G1214A	p.R405H	TTGGAGCGCTGCT	.	75.0	41.0	80.0	0.0	.	658
TNC	3371	broad.mit.edu;bcgsc.ca	37	9	117810717	117810717	+	Missense_Mutation	SNP	G	G	T	rs148223175	byfrequency;alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TNC	NM_002160	exon16	c.C4674A	p.S1558R	TAGAAAGCTGTCA	.	73.0	5.0	49.0	0.0	G|1.000;A|0.000	517
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25654029	25654029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TOP2B	NM_001068	exon28	c.A3748G	p.K1250E	ACTTTTTGCTGGC	.	48.0	28.0	43.0	0.0	.	273
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179815558	179815558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TOR1AIP2	NM_001199260	exon7	c.G1061A	p.G354E	TCAAACCCATAGC	.	80.0	32.0	51.0	0.0	.	69
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14270940	14270940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TRIO	NM_007118	exon2	c.G164A	p.R55Q	GGTTTCGAAAAAA	.	70.0	43.0	85.0	0.0	.	562
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	230657707	230657707	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TRIP12	NM_004238	exon26	c.A3898T	p.R1300X	GGTATCTCTCGAT	.	68.0	40.0	90.0	0.0	.	572
TRMT10B	158234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37762014	37762014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_144964	exon2	c.A86C	p.E29A	CAGGTGAAGATGG	.	139.0	62.0	145.0	0.0	.	.
UBR4	23352	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19478351	19478351	+	Silent	SNP	G	G	A	rs144919897	byfrequency	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	UBR4	NM_020765	exon48	c.C6999T	p.P2333P	GCCTCCGGGCTGT	.	56.0	32.0	92.0	0.0	G|0.995;A|0.005	612
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61430400	61430400	+	Splice_Site	SNP	T	T	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	USP34	NM_014709	exon76	c.9385-2A>C	.	TTGCCCTGAAGGT	.	55.0	35.0	57.0	0.0	.	579
VIM	7431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17277885	17277885	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	VIM	NM_003380	exon8	c.A1270T	p.R424W	AACCTGAGGGGTA	.	131.0	58.0	110.0	1.0	.	291
ZBTB14	7541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	5290910	5290910	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_001243702	exon4	c.1297delG	p.A433fs	TCGCTGCCGCCTG	.	49.0	23.0	74.0	0.0	.	.
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35435350	35435350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ZNF30	NM_001099438	exon5	c.A1483G	p.S495G	ACTTTTAGTCGAG	.	64.0	31.0	79.0	0.0	.	24
OR5I1	10798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55703708	55703709	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	.	.	.	p.HL56QF	TTTGAAGGTGAGG	.	152.0	73.0	129.0	1.0	.	.
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52415808	52415809	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	.	.	.	p.G2588R	GGGCGTGGGTGGC	.	78.0	23.0	112.0	0.0	.	.