Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADPRH	141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119306620	119306620	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ADPRH	NM_001125	exon5	c.G969A	p.V323V	AGGAGTGAGTCCC	.	115.0	59.0	83.0	1.0	.	91
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230846423	230846423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AGT	NM_000029	exon2	c.T174C	p.N58N	CCCGGCATTGGCC	.	161.0	43.0	93.0	0.0	.	226
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247024551	247024551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AHCTF1	NM_015446	exon29	c.G3809T	p.C1270F	ACTGCACATTTTT	.	426.0	120.0	246.0	0.0	.	97
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33935332	33935332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AP2B1	NM_001282	exon5	c.A451G	p.I151V	CATGATATCAATG	.	180.0	110.0	103.0	0.0	.	91
APH1B	83464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63571457	63571457	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	APH1B	NM_001145646	exon2	c.C211T	p.L71L	AAATATCTGCTGA	.	156.0	14.0	126.0	0.0	.	658
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155448114	155448114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ASH1L	NM_018489	exon3	c.G4547C	p.R1516P	CTATAGCGCTTCA	.	137.0	50.0	115.0	0.0	.	234
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319755	31319755	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ASXL3	NM_030632	exon11	c.A2387T	p.N796I	GAGAGAACCTTAC	.	58.0	17.0	65.0	0.0	.	49
C1orf106	55765	broad.mit.edu;bcgsc.ca	37	1	200870192	200870194	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	AGG	AGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1orf106	NM_018265	exon5	c.722_724del	p.241_242del	TGCTGCAGGAGGA	.	20.0	7.0	23.0	0.0	.	93
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60520924	60520924	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1orf87	NM_152377	exon3	c.C294T	p.N98N	TTTCTGGTTGTTT	.	233.0	104.0	228.0	0.0	.	154
C1QB	713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22987600	22987600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1QB	NM_000491	exon3	c.C483T	p.T161T	GTTCACCTGCAAG	.	157.0	72.0	121.0	1.0	.	153
C20orf111	51526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42826241	42826248	+	Frame_Shift_Del	DEL	GCTTTTGT	GCTTTTGT	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	GCTTTTGT	GCTTTTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C20orf111	NM_016470	exon4	c.323_330del	p.108_110del	AGTCTGGCTTTTG	.	113.0	37.0	89.0	0.0	.	90
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146648100	146648100	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001080531	exon3	c.A345G	p.S115S	AAAGTCATTTGAT	.	510.0	139.0	260.0	0.0	.	.
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181693632	181693632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CACNA1E	NM_001205293	exon17	c.A2101G	p.I701V	TTGGCTATCGCTG	.	113.0	50.0	78.0	0.0	.	95
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152729009	152729009	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CACNB4	NM_000726	exon7	c.522-2A>G	.	ATTTCCTAGGATA	.	91.0	41.0	71.0	0.0	.	24
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26491839	26491839	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCKAR	NM_000730	exon1	c.C51T	p.P17P	TTCACAGGGAGGA	.	99.0	41.0	101.0	0.0	.	523
CCT2	10576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69986800	69986800	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCT2	NM_006431	exon9	c.A795G	p.A265A	GGTTGCAGAAATA	.	81.0	26.0	55.0	0.0	.	651
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64603631	64603631	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDC42BPG	NM_017525	exon13	c.C1626T	p.A542A	GCTCAGGGCCCGG	.	51.0	18.0	48.0	0.0	.	528
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73453964	73453964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDH23	NM_001171931	exon20	c.T2237G	p.V746G	TCATCGTTCGCGC	.	59.0	25.0	56.0	0.0	.	563
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31323299	31323299	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDH6	NM_004932	exon12	c.C2257T	p.L753L	AGCTCGCTGGAGT	.	165.0	73.0	146.0	0.0	.	159
CLCA4	22802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87040355	87040355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CLCA4	NM_012128	exon10	c.G1600A	p.D534N	CTCTGGGATCCCA	.	239.0	96.0	198.0	2.0	.	92
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99690405	99690405	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CNTN5	NM_001243270	exon3	c.G186T	p.L62L	AACACTGAGTGCT	.	213.0	42.0	196.0	0.0	.	366
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	146536896	146536896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CNTNAP2	NM_014141	exon3	c.A302T	p.Q101L	CAACCCAAGGAAG	.	176.0	106.0	123.0	0.0	.	100
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40770037	40770037	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	COL9A2	NM_001852	exon24	c.1242delC	p.P414fs	AATTCCGGGGGGG	.	78.0	36.0	58.0	0.0	.	92
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	173316743	173316743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CPEB4	NM_030627	exon1	c.G7T	p.D3Y	ATGGGGGATTACG	.	228.0	91.0	220.0	0.0	.	90
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197407733	197407733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CRB1	NM_201253	exon10	c.A3806G	p.Y1269C	CTTGCTACAATGG	.	114.0	42.0	88.0	0.0	.	161
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17248518	17248518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CROCC	NM_014675	exon1	c.G5A	p.S2N	CCATGAGCTTGGG	.	224.0	45.0	215.0	0.0	.	137
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113585851	113585851	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSMD3	NM_198123	exon24	c.A3921T	p.L1307L	AGCACCTAGTAGA	.	82.0	18.0	88.0	0.0	.	1132
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38690173	38690173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSNK1E	NM_001894	exon9	c.A1160G	p.N387S	GAGACGTTGGCGG	.	51.0	25.0	43.0	0.0	.	1193
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	222.0	84.0	175.0	1.0	.	24361
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16975121	16975121	+	Missense_Mutation	SNP	C	C	T	rs143400113	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CUBN	NM_001081	exon40	c.G6089A	p.R2030Q	CACGTTCGGTGAG	.	123.0	54.0	91.0	0.0	C|0.999;T|0.001	166
CWF19L2	143884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107299752	107299752	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CWF19L2	NM_152434	exon8	c.T1206C	p.C402C	ACCACTACACAAA	.	203.0	104.0	178.0	1.0	.	68
CXorf36	79742	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	45060068	45060068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CXorf36	NM_176819	exon1	c.G4T	p.E2X	GGGGCTCCATCTT	.	40.0	14.0	34.0	0.0	.	130
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	122011265	122011265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DBC1	NM_014618	exon3	c.C382G	p.H128D	GCAGGTGGGTGCC	.	70.0	16.0	68.0	0.0	.	582
DHCR7	1717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71146469	71146469	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DHCR7	NM_001163817	exon9	c.G1380A	p.E460E	GTAGCGCTCCCAG	.	77.0	19.0	37.0	0.0	.	228
DOK1	1796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74783058	74783058	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DOK1	NM_001381	exon4	c.C492T	p.A164A	TGAGGCCGCCGAG	.	112.0	36.0	60.0	0.0	.	226
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103175403	103175403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DYNC2H1	NM_001080463	exon78	c.T11357G	p.L3786W	TCTGTTTGAAGAA	.	90.0	37.0	88.0	0.0	.	68
ELP6	54859	broad.mit.edu;bcgsc.ca	37	3	47552690	47552690	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001031703	exon2	c.C81A	p.A27A	TGTCTTGGCATCA	.	93.0	6.0	54.0	0.0	.	.
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14740911	14740911	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	EMR3	NM_032571	exon14	c.C1752A	p.T584T	GATGATGGTGAAG	.	76.0	34.0	56.0	0.0	.	528
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113793724	113793724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	F10	NM_000504	exon4	c.G310T	p.G104C	AAAGACGGCCTCG	.	100.0	31.0	66.0	0.0	.	227
FAT2	2196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	150946610	150946610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FAT2	NM_001447	exon1	c.T1883C	p.L628P	GCAGTAAGATTGA	.	109.0	21.0	78.0	0.0	.	96
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127626533	127626533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FBN2	NM_001999	exon50	c.G6336T	p.K2112N	AGAACACTTTCCA	.	152.0	59.0	145.0	0.0	.	146
FCN1	2219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137801655	137801655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FCN1	NM_002003	exon9	c.C970T	p.R324W	CGGGCCGCACCTT	.	68.0	27.0	47.0	0.0	.	154
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34289345	34289345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FHOD3	NM_025135	exon15	c.A1999T	p.R667W	AGGGACAGGACAA	.	100.0	65.0	131.0	0.0	.	139
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128486943	128486943	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FLNC	NM_001127487	exon24	c.G4272C	p.G1424G	CTTCGGGGGGCGG	.	121.0	87.0	64.0	0.0	.	141
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171251220	171251220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FMO1	NM_002021	exon7	c.G931T	p.V311F	AACTCTGTCATAT	.	86.0	11.0	69.0	0.0	.	515
FSTL5	56884	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	162307497	162307497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FSTL5	NM_020116	exon16	c.C1946T	p.P649L	GACTGAGGAACGC	.	180.0	40.0	99.0	1.0	.	158
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47427952	47427952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GABRB1	NM_000812	exon9	c.T1342C	p.S448P	GTGAATTCCATAG	.	140.0	60.0	175.0	0.0	.	92
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14550361	14550361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GLRA2	NM_001118885	exon3	c.G69C	p.R23S	GTTTAGGACGGCT	.	193.0	171.0	175.0	1.0	.	131
GLRB	2743	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158043481	158043481	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GLRB	NM_001166061	exon4	c.230-1G>C	.	TTCATAGGCATTC	.	602.0	142.0	362.0	1.0	.	92
HDAC3	8841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141008783	141008783	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HDAC3	NM_003883	exon7	c.G567A	p.T189T	GGACACCGTCATG	.	115.0	52.0	109.0	0.0	.	227
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43036067	43036067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HNF4A	NM_178849	exon3	c.C337T	p.R113C	CAGTGCCGCTACT	.	76.0	31.0	75.0	0.0	.	227
HOMER1	9456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78734957	78734957	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HOMER1	NM_004272	exon5	c.T403T	p.W135W	GAAGATCCCCGCC	.	116.0	57.0	94.0	0.0	.	90
HYDIN	54768	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70841914	70841914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HYDIN	NM_001270974	exon86	c.G14935T	p.G4979C	CCTGGCCTCCTGG	.	122.0	62.0	93.0	1.0	.	92
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220276901	220276901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IARS2	NM_018060	exon8	c.T1063A	p.S355T	ACACTTTCAGGTG	.	82.0	20.0	58.0	0.0	.	94
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	82912269	82912269	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IBTK	NM_015525	exon18	c.2705delA	p.N902fs	GCCATATTCAATC	.	127.0	107.0	205.0	0.0	.	92
IFNA4	3441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21187461	21187461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IFNA4	NM_021068	exon1	c.T70C	p.C24R	GATCACAGCCCAG	.	370.0	160.0	304.0	0.0	.	92
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15233713	15233713	+	Silent	SNP	C	C	A	rs145335506	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ILVBL	NM_006844	exon5	c.G594T	p.S198S	GGTGCCCGACTGG	.	43.0	16.0	31.0	0.0	C|1.000;T|0.000	92
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1878852	1878852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IRX4	NM_016358	exon5	c.A791G	p.D264G	AGCGGGTCGAAGT	.	193.0	80.0	170.0	0.0	.	226
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52860642	52860642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ITIH4	NM_001166449	exon5	c.A545G	p.Q182R	ATGCCCTGGGGCT	.	53.0	32.0	48.0	0.0	.	46
JAG1	182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	10654131	10654131	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	JAG1	NM_000214	exon1	c.C48A	p.L16L	GAGCAGGAGGCTT	.	73.0	26.0	48.0	0.0	.	1273
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30032269	30032269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCNA4	NM_002233	exon2	c.G1957T	p.V653L	TTCACACATCAGT	.	120.0	50.0	94.0	0.0	.	517
KCNK6	9424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38818018	38818018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCNK6	NM_004823	exon3	c.C917T	p.T306I	CCCACACCGACTA	.	40.0	21.0	41.0	0.0	.	91
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36442832	36442832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCTD20	NM_173562	exon3	c.C427G	p.L143V	ACCATGCTGGGAA	.	231.0	74.0	112.0	0.0	.	92
KRT33B	3884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521232	39521232	+	Missense_Mutation	SNP	G	G	A	rs199838257		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KRT33B	NM_002279	exon6	c.C896T	p.T299M	GTCAGCGTGTTTT	.	132.0	72.0	87.0	1.0	G|0.999;A|0.000	90
LDHD	197257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75147448	75147448	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LDHD	NM_153486	exon8	c.G1140T	p.T380T	TGGCCGCGTGGCC	.	61.0	31.0	53.0	0.0	.	90
LOC643923	0	broad.mit.edu;mdanderson.org	37	11	107462580	107462580	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	GAGGAGCTAGGCA	.	84.0	40.0	95.0	0.0	.	.
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141707938	141707938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRP1B	NM_018557	exon20	c.G3002T	p.G1001V	ACACAGCCCACCT	.	172.0	60.0	111.0	0.0	.	311
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46912023	46912023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRP4	NM_002334	exon14	c.G1720A	p.G574S	TGTTGCCCCAGTC	.	62.0	33.0	67.0	0.0	.	94
LSR	51599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	35740010	35740010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LSR	NM_205834	exon1	c.C229T	p.L77F	GTGTGGCTTCTGC	.	90.0	31.0	72.0	0.0	.	90
LTK	4058	broad.mit.edu;mdanderson.org	37	15	41803628	41803628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LTK	NM_001135685	exon6	c.G806C	p.G269A	GCCGCCCCGCCTC	.	21.0	9.0	12.0	0.0	.	1377
LYG2	254773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99861785	99861785	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LYG2	NM_175735	exon4	c.T321C	p.H107H	TCCGCCATGGCTT	.	71.0	38.0	52.0	0.0	.	91
MAK	4117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10784806	10784806	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MAK	NM_005906	exon12	c.1317-1G>T	.	GGAAGCCTTGAAA	.	191.0	67.0	80.0	0.0	.	335
MIR891B	100126304	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	145082629	145082629	+	RNA	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	GACTCAGGTAAGT	.	60.0	56.0	68.0	0.0	.	.
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36221665	36221665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MLL4	NM_014727	exon26	c.C5334A	p.C1778X	TCGGTGCCGAATT	.	85.0	32.0	66.0	0.0	.	697
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61275080	61275080	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MNAT1	NM_001177963	exon4	c.C354T	p.T118T	CAACACCAAAAAG	.	475.0	231.0	442.0	1.0	.	523
MOB3B	79817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27330605	27330605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_024761	exon4	c.A631G	p.T211A	TGCTCGTCATTTC	.	112.0	54.0	113.0	0.0	.	.
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60767109	60767109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MRC2	NM_006039	exon24	c.G3561A	p.L1187L	TGGGCTGGCTGGC	.	28.0	17.0	27.0	0.0	.	117
MUC5B	727897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1267649	1267649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_002458	exon31	c.C9539T	p.T3180M	GATCCACGGCCAC	.	239.0	42.0	207.0	1.0	.	.
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10223741	10223741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYH13	NM_003802	exon25	c.G3184A	p.D1062N	TCAGATCTCCTTC	.	81.0	69.0	90.0	0.0	.	6
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10549294	10549294	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYH3	NM_002470	exon11	c.G954A	p.E318E	CAGGATCTCCCCC	.	189.0	11.0	211.0	0.0	.	95
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1915791	1915791	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYT1L	NM_015025	exon13	c.1703+1G>T	.	GGCTTACCTTCGG	.	95.0	26.0	40.0	0.0	.	95
NADSYN1	55191	broad.mit.edu;bcgsc.ca	37	11	71202924	71202924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NADSYN1	NM_018161	exon18	c.A1739C	p.D580A	TGGCTGATGGACA	.	95.0	23.0	69.0	1.0	.	92
NBPF14	25832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	148004618	148004618	+	Missense_Mutation	SNP	T	T	C	rs143743039		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NBPF14	NM_015383	exon22	c.A2696G	p.N899S	AACCTATTGTCCA	.	453.0	265.0	410.0	0.0	T|1.000;C|0.000	91
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69331285	69331285	+	Missense_Mutation	SNP	A	A	G	rs148791297	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NOX5	NM_024505	exon9	c.A1460G	p.Y487C	CTCGCTATGAGTG	.	148.0	67.0	94.0	0.0	A|0.999;G|0.001	136
NR3C1	2908	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142680054	142680054	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NR3C1	NM_001024094	exon5	c.A1746T	p.I582I	ACCTGGTATTGCC	.	130.0	66.0	97.0	1.0	.	92
NXF3	56000	broad.mit.edu;bcgsc.ca	37	X	102337749	102337749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NXF3	NM_022052	exon8	c.C719A	p.A240E	TTCGATGCCATCT	.	64.0	5.0	54.0	0.0	.	205
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228467595	228467595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OBSCN	NM_001271223	exon33	c.C8757T	p.C2919C	GTCCTGCGACTTC	.	155.0	51.0	80.0	0.0	.	403
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	123461262	123461262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OGFOD2	NM_024623	exon4	c.T71G	p.L24R	AAGCCCTCATCGC	.	90.0	44.0	60.0	0.0	.	69
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57995924	57995924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	OR10Q1,NS,carcinoma,+2	OR10Q1	NM_001004471	exon1	c.C424T	p.R142C	GCTCGCGGGTCAT	.	46.0	23.0	61.0	0.0	.	70
OR2G2	81470	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247752217	247752217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR2G2	NM_001001915	exon1	c.G556A	p.V186M	GTCCCTGTGCTCA	.	281.0	89.0	162.0	1.0	.	68
OR2T1	26696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569357	248569357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR2T1	NM_030904	exon1	c.C62A	p.T21K	GCCTAACAATTAA	.	216.0	74.0	125.0	1.0	.	69
OR52N1	79473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5809718	5809718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR52N1	NM_001001913	exon1	c.C329T	p.T110I	ATCCCTGTGAAGG	.	68.0	37.0	45.0	0.0	.	69
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72921033	72921033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OTOP2	NM_178160	exon2	c.G306T	p.W102C	CATCTGGCTCCGA	.	62.0	22.0	40.0	0.0	.	134
OXSR1	9943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38292941	38292941	+	Missense_Mutation	SNP	G	G	T	rs145431865	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OXSR1	NM_005109	exon16	c.G1423T	p.D475Y	CTGGTCGACGGAA	.	163.0	84.0	144.0	0.0	G|0.999;A|0.001	311
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140208380	140208380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHA6	NM_018909	exon1	c.T704C	p.V235A	TGGATGTGAATGA	.	170.0	84.0	148.0	0.0	.	92
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140347864	140347864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHAC2	NM_031883	exon1	c.A1513G	p.T505A	GAGGTGACCTACT	.	156.0	66.0	126.0	0.0	.	26
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu	37	5	140481966	140481966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHB3	NM_018937	exon1	c.1733delG	p.R578fs	TGCCCCGGGCGGC	.	47.0	11.0	28.0	0.0	.	92
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773532	140773532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_014004	exon1	c.T1152C	p.C384C	TGTCTGTTACACA	.	125.0	55.0	117.0	0.0	.	.
PENK	5179	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	57353832	57353832	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PENK	NM_001135690	exon4	c.A803G	p.X268X	AGATATTAAAATC	.	46.0	40.0	78.0	0.0	.	517
PHB2	11331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7076910	7076910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PHB2	.	.	.	.	TTTCTACCAAGAA	.	56.0	24.0	43.0	0.0	.	48
PHOSPHO1	162466	broad.mit.edu;mdanderson.org	37	17	47302389	47302389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PHOSPHO1	NM_001143804	exon3	c.G98T	p.C33F	GAGCAGCAGGAGG	.	11.0	6.0	10.0	0.0	.	90
PKIB	5570	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	123039083	123039083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PKIB	NM_001270394	exon7	c.A165G	p.K55K	CCTCAAACTGGAG	.	11.0	8.0	16.0	0.0	.	90
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20466020	20466020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PLA2G2F	NM_022819	exon1	c.C100T	p.P34S	TCCTGTCCTTCAA	.	70.0	36.0	65.0	0.0	.	91
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32122457	32122457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PPT2	NM_138717	exon2	c.C104T	p.P35L	CAGCCCCCGCGCC	.	127.0	39.0	63.0	0.0	.	44
PSTPIP1	9051	broad.mit.edu;ucsc.edu	37	15	77310541	77310541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PSTPIP1	NM_003978	exon2	c.T89C	p.L30P	GGCTTCTGGATGG	.	105.0	10.0	113.0	2.0	.	23
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170598268	170598268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RANBP17	NM_022897	exon16	c.T1843G	p.F615V	CTTCAGTTCCTAA	.	163.0	71.0	153.0	0.0	.	524
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113553809	113553809	+	Missense_Mutation	SNP	C	C	T	rs150792397		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RASAL1	NM_004658	exon10	c.G779A	p.R260H	AGGACGCGGTCCT	.	131.0	61.0	107.0	0.0	C|1.000;T|0.000	229
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43694401	43694401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RASGEF1A	NM_145313	exon9	c.G1012T	p.A338S	ACTTGGCTGTCTT	.	69.0	25.0	58.0	0.0	.	227
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29977613	29977613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RBMS3	NM_001177712	exon12	c.T1015C	p.S339P	CCCATGTCAATGC	.	298.0	161.0	198.0	0.0	.	90
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29977619	29977619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RBMS3	NM_001177712	exon12	c.C1021A	p.Q341K	TCAATGCAGCCAG	.	293.0	160.0	204.0	0.0	.	90
RNF219	79596	broad.mit.edu;bcgsc.ca	37	13	79190249	79190249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RNF219	NM_024546	exon6	c.C1647A	p.D549E	GCTGTTGTCTGAC	.	110.0	6.0	98.0	0.0	.	135
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213415976	213415976	+	Silent	SNP	C	C	T	rs147823242	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RPS6KC1	NM_012424	exon12	c.C2886T	p.A962A	CGATGCCATAGAG	.	242.0	66.0	134.0	0.0	C|0.999;T|0.001	417
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50407317	50407317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SALL4	NM_020436	exon2	c.C1705T	p.L569F	AAATGAGACATTC	.	119.0	58.0	72.0	0.0	.	92
SARM1	23098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26723269	26723269	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_015077	exon10	c.C2136T	p.T712T	TGACACCAGTTTG	.	103.0	59.0	70.0	0.0	.	.
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38921513	38921513	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN11A	NM_014139	exon19	c.A3321G	p.L1107L	CCATTTTAGTACC	.	107.0	38.0	93.0	0.0	.	99
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166898866	166898866	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN1A	NM_001165963	exon12	c.A2112G	p.L704L	ATCTTCTAGAAAG	.	150.0	63.0	108.0	0.0	.	147
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166245504	166245504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN2A	NM_001040143	exon26	c.G5188T	p.D1730Y	CCTCCAGACTGTG	.	318.0	56.0	225.0	0.0	.	142
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19786089	19786089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC24A2	NM_001193288	exon1	c.A776G	p.N259S	ATGACATTATCCA	.	137.0	32.0	102.0	0.0	.	517
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70243246	70243246	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC25A16	NM_152707	exon9	c.T942A	p.S314S	TGCTTGAGAGGGA	.	42.0	9.0	45.0	0.0	.	90
SLC5A1	6523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32487698	32487698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC5A1	NM_000343	exon11	c.A1229G	p.Y410C	ACATCTACGCCAA	.	91.0	42.0	68.0	0.0	.	91
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	92397220	92397220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLCO3A1	NM_013272	exon1	c.A82G	p.K28E	AACAAGAAAAAGA	.	100.0	38.0	113.0	0.0	.	91
SMOC2	64094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168927046	168927046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SMOC2	NM_022138	exon3	c.G277A	p.E93K	GTGGCCGAAAGGA	.	71.0	55.0	108.0	0.0	.	91
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22676816	22676816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SPAG6	NM_172242	exon6	c.T743C	p.V248A	TGGTTGTTGAAGC	.	103.0	45.0	90.0	0.0	.	153
TARS	6897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	33448802	33448802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TARS	NM_152295	exon3	c.G294A	p.W98X	ATCTTGGAAAACT	.	136.0	62.0	112.0	0.0	.	92
TBX2	6909	broad.mit.edu;mdanderson.org	37	17	59482800	59482800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TBX2	NM_005994	exon6	c.G1289A	p.R430Q	AAGCTCGGAGGAA	.	16.0	6.0	16.0	0.0	.	226
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179604969	179604969	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TDRD5	NM_173533	exon9	c.G1467C	p.R489R	CATCCGGATCTAT	.	89.0	36.0	97.0	0.0	.	94
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46660441	46660441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TDRD6	NM_001168359	exon1	c.A4576G	p.T1526A	TATGCCACTGTGA	.	284.0	88.0	126.0	0.0	.	138
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155172876	155172876	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THBS3	NM_007112	exon8	c.808+1G>T	.	CACTCACCGCACA	.	143.0	58.0	103.0	0.0	.	222
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138414638	138414638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THSD7B	.	.	.	.	CAGGAGGCAAATG	.	124.0	44.0	106.0	0.0	.	75
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218700829	218700829	+	Missense_Mutation	SNP	G	G	T	rs141836163	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TNS1	NM_022648	exon18	c.C2738A	p.P913H	CTACGAGGGGATG	.	128.0	69.0	88.0	0.0	G|0.999;A|0.001	156
TOP2A	7153	ucsc.edu;bcgsc.ca	37	17	38560724	38560724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TOP2A	NM_001067	exon18	c.C2066A	p.T689N	GTGGTAGTTTGTC	.	163.0	87.0	118.0	2.0	.	655
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1488375	1488375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TPO	NM_175719	exon9	c.C1346T	p.T449I	TCATCACCCTGAG	.	239.0	83.0	149.0	0.0	.	332
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	160156300	160156300	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRIM59	NM_173084	exon3	c.A672T	p.R224S	CTTCATTCTTTCA	.	209.0	64.0	119.0	0.0	.	658
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13220610	13220610	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRMT1	NM_001136035	exon10	c.G1149A	p.E383E	TTCACACTCGGGG	.	61.0	20.0	41.0	0.0	.	92
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179590676	179590676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TTN	NM_001267550	exon70	c.G20373C	p.E6791D	TACCACCTCAAAC	.	234.0	128.0	169.0	0.0	.	636
TYSND1	219743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71899886	71899886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TYSND1	NM_173555	exon4	c.A1495T	p.S499C	TGTTGCTGGTGAT	.	168.0	76.0	141.0	0.0	.	135
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49152692	49152692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	USP19	NM_001199161	exon13	c.C1991T	p.T664I	TGGTGGGTGCCCT	.	64.0	22.0	55.0	1.0	.	663
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120182988	120182988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	USP53	NM_019050	exon11	c.G941T	p.W314L	CCAAATGGGTATT	.	112.0	56.0	91.0	0.0	.	660
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183956399	183956399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_138345	exon13	c.C1940G	p.S647C	ACCCCTCTGACAC	.	124.0	28.0	94.0	0.0	.	.
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85561679	85561679	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR63	NM_145172	exon11	c.T1239A	p.I413I	TATCATTGCTGGA	.	152.0	53.0	136.0	0.0	.	95
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54358525	54358525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR7	NM_052834	exon8	c.G796A	p.V266I	GACTTTGTCTCAT	.	66.0	16.0	77.0	0.0	.	93
ZC3H18	124245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88696976	88696976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZC3H18	NM_144604	exon17	c.G2650T	p.A884S	CCTGCAGCCCCGG	.	18.0	9.0	30.0	0.0	.	69
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72828036	72828036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZFHX3	NM_006885	exon9	c.G8545C	p.D2849H	CCTCGTCTCCAGT	.	88.0	44.0	72.0	0.0	.	72
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53384284	53384284	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNF320	NM_207333	exon4	c.T1095G	p.A365A	CCGGAAAGCCTTG	.	97.0	41.0	60.0	0.0	.	91
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47865291	47865291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNFX1	NM_021035	exon14	c.T4270C	p.Y1424H	CACCATACAGGAG	.	53.0	28.0	48.0	0.0	.	24
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135976732	135976732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZRANB3	NM_032143	exon16	c.G2267A	p.S756N	TTACAGCTCATCT	.	287.0	86.0	215.0	0.0	.	658