Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACOT12	134526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80626218	80626218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ACOT12	NM_130767	exon15	c.T1663G	p.F555V	TTTAAAATGTGCT	.	139.0	76.0	109.0	0.0	.	92
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175897952	175897952	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ADAM29	NM_001130703	exon4	c.C1276T	p.L426L	TGCTGTCTGTCAA	.	101.0	38.0	120.0	0.0	.	729
ANKRD27	84079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33110252	33110252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ANKRD27	NM_032139	exon20	c.T1921C	p.S641P	TGATGGAGTCCAC	.	59.0	16.0	55.0	0.0	.	95
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45803160	45803160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ANO6	NM_001204803	exon17	c.G1964A	p.G655E	TAATTGGGCGATT	.	77.0	23.0	83.0	0.0	.	516
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	62593583	62593583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ASPH	NM_001164756	exon4	c.T311C	p.I104T	TCATAGATTCCTA	.	316.0	94.0	324.0	0.0	.	93
ASUN	55726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27066960	27066960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_018164	exon13	c.A1521C	p.K507N	ATCATTTTTTCTT	.	274.0	74.0	265.0	0.0	.	.
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	11049587	11049587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_182481	exon4	c.C314T	p.A105V	TCCCGGGCTGTCG	.	564.0	31.0	473.0	0.0	.	.
C17orf99	100141515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76160409	76160409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_001163075	exon4	c.A604G	p.N202D	AACGCCAATGTCC	.	187.0	61.0	215.0	0.0	.	.
CASC4	113201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44671957	44671957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CASC4	NM_138423	exon7	c.G872T	p.G291V	CAACTGGACAACC	.	111.0	40.0	100.0	1.0	.	91
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42781149	42781149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CCDC13	NM_144719	exon9	c.G1141A	p.D381N	GCTCGTCATCATG	.	105.0	40.0	117.0	0.0	.	91
CCL3	6348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34416065	34416065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CCL3	NM_002983	exon3	c.G232A	p.E78K	ACTCCTCACTGGG	.	449.0	124.0	488.0	0.0	.	90
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	64984770	64984770	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CDH11	NM_001797	exon12	c.C1794T	p.N598N	TGCCCCGTTCACG	.	62.0	22.0	74.0	0.0	.	852
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22310306	22310306	+	Missense_Mutation	SNP	G	G	T	rs201377315	alternate_allele	TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CELA3B	NM_007352	exon5	c.G482T	p.G161V	TCACCGGCTGGGG	.	427.0	139.0	426.0	0.0	.	91
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25467000	25467000	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CENPJ	NM_018451	exon10	c.A2997G	p.L999L	CTGTTTTAAAGTC	.	161.0	54.0	144.0	0.0	.	92
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79026634	79026634	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CMYA5	NM_153610	exon2	c.C2046T	p.D682D	AGGAGACGAGGCC	.	148.0	6.0	106.0	0.0	.	77
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70732260	70732260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CNOT2	NM_001199302	exon11	c.A938G	p.D313G	GTACAGATGGACC	.	194.0	57.0	161.0	0.0	.	226
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71199899	71199899	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	COG1	NM_018714	exon9	c.C2349T	p.A783A	AGCTGCCTATGAG	.	173.0	59.0	157.0	0.0	.	91
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189856233	189856233	+	Silent	SNP	C	C	T	rs138569287		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	COL3A1	NM_000090	exon12	c.C873T	p.G291G	TCCAGGCGAAAAT	.	256.0	74.0	270.0	0.0	C|1.000;T|0.000	581
COL6A6	131873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130368056	130368056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	COL6A6	NM_001102608	exon32	c.C5383A	p.P1795T	AGCTGCCCCGTGG	.	179.0	64.0	175.0	1.0	.	76
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9574031	9574031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CPSF3	NM_016207	exon6	c.A551G	p.E184G	GACAAGAAGATAG	.	357.0	107.0	343.0	0.0	.	153
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274910	41274910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CTNNB1	NM_001098209	exon8	c.A1160T	p.N387I	TCAGGAATCTTTC	.	152.0	45.0	126.0	0.0	.	24361
CYP11B2	1585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143996180	143996180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CYP11B2	NM_000498	exon4	c.G740T	p.W247L	CTGATCCAGCGAG	.	461.0	104.0	338.0	1.0	.	90
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143996179	143996179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CYP11B2	NM_000498	exon4	c.G741T	p.W247C	GCTGATCCAGCGA	.	457.0	103.0	341.0	0.0	.	90
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70661161	70661161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	DDX50	NM_024045	exon1	c.G21T	p.W7C	CCTCTGGGGGGAC	.	196.0	73.0	206.0	0.0	.	91
DESI2	51029	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244849969	244849969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_016076	exon2	c.G113A	p.R38K	ATGGCAGAGGTAC	.	105.0	32.0	77.0	1.0	.	.
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	396809	396809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	DOCK8	NM_203447	exon25	c.C2995G	p.H999D	CACGTACATAACA	.	100.0	40.0	111.0	0.0	.	517
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55225380	55225380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	EGFR	NM_005228	exon11	c.C1232G	p.P411R	CTTGGCCTGAAAA	.	120.0	43.0	147.0	0.0	.	44910
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56468631	56468631	+	Silent	SNP	G	G	T	rs141688594	by1000genomes	TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ERC2	NM_015576	exon2	c.C405A	p.V135V	GGAGGGGACCTGG	.	148.0	50.0	129.0	0.0	G|0.999;T|0.000	24
FAM129A	116496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184787922	184787922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FAM129A	NM_052966	exon9	c.G1023T	p.E341D	CACACTCTCCAAG	.	69.0	35.0	104.0	0.0	.	94
FANCB	2187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14876077	14876077	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FANCB	NM_001018113	exon6	c.1105-1G>A	.	TTCACTCTAATAA	.	127.0	93.0	156.0	0.0	.	562
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150886868	150886868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FAT2	NM_001447	exon22	c.G12364T	p.A4122S	CAGAGGCCTTGCT	.	185.0	32.0	151.0	0.0	.	96
FGA	2243	hgsc.bcm.edu;broad.mit.edu	37	4	155507454	155507455	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FGA	NM_000508	exon5	c.1127_1128insCTG	p.E376delinsAE	GAGCTCTCAGAGG	.	87.0	22.0	98.0	0.0	.	93
FIZ1	84922	broad.mit.edu;mdanderson.org	37	19	56104771	56104771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FIZ1	NM_032836	exon3	c.C536T	p.A179V	AGACCCGCGCCTG	.	15.0	7.0	15.0	0.0	.	90
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	79238582	79238583	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FRAS1	NM_025074	exon17	c.1880_1881insC	p.S627fs	CCTGCAGCCCCCC	.	48.0	16.0	71.0	0.0	.	68
GNGT2	2793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47284155	47284155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	GNGT2	NM_031498	exon4	c.T174C	p.N58N	GAAGGGATTCTTG	.	166.0	59.0	167.0	0.0	.	227
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110086824	110086824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	GPR61	NM_031936	exon2	c.T1180C	p.S394P	TCTGAGTCCTGGG	.	92.0	26.0	66.0	0.0	.	91
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89924641	89924641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	GPR98	NM_032119	exon8	c.C1501A	p.P501T	AGCGAGCCAGCGG	.	145.0	42.0	88.0	0.0	.	103
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242194526	242194526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	HDLBP	NM_005336	exon9	c.C1128G	p.H376Q	GAAACGGTGAAGC	.	73.0	21.0	75.0	0.0	.	290
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99459327	99459327	+	Missense_Mutation	SNP	G	G	A	rs143193096		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	IGF1R	NM_000875	exon9	c.G1963A	p.G655S	CAGGACGGCTACC	.	170.0	53.0	183.0	0.0	G|1.000;A|0.000	1490
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	3600047	3600047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	IRX1	NM_024337	exon2	c.G985A	p.A329T	GACGGTGCGCCCA	.	74.0	28.0	54.0	0.0	.	228
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133946888	133946888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	JAKMIP3	NM_001105521	exon3	c.G706T	p.A236S	GGGCATGCTCAGA	.	73.0	19.0	90.0	0.0	.	23
KATNA1	11104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	149916182	149916182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KATNA1	NM_007044	exon11	c.G1466C	p.G489A	CATGATCCAAACT	.	66.0	17.0	110.0	0.0	.	91
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84910598	84910598	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KIAA1009	NM_014895	exon9	c.T744A	p.S248S	TGCAACAGAGTCT	.	113.0	41.0	106.0	0.0	.	91
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123097024	123097040	+	Frame_Shift_Del	DEL	ATTTTTCGGTGGTGGAA	ATTTTTCGGTGGTGGAA	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	ATTTTTCGGTGGTGGAA	ATTTTTCGGTGGTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KIAA1109	NM_015312	exon4	c.313_329del	p.105_110del	TTCATCATTTTTC	.	250.0	26.0	361.0	0.0	.	80
KLF10	7071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103663550	103663550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KLF10	NM_005655	exon3	c.A1010G	p.N337S	GTGCCATTCGGGC	.	233.0	38.0	157.0	0.0	.	226
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87788816	87788816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KLHDC4	NM_001184856	exon4	c.G353T	p.R118M	CAGCGCCTCGGAG	.	161.0	55.0	181.0	0.0	.	182
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183184629	183184629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LAMC2	NM_005562	exon3	c.T310A	p.C104S	TGCAGCTGTAAAC	.	62.0	34.0	97.0	0.0	.	93
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154173763	154173763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LARP1	NM_015315	exon7	c.C942G	p.S314R	TGTCAGCAGCACC	.	390.0	102.0	297.0	0.0	.	94
LIPH	200879	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185234879	185234879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LIPH	NM_139248	exon7	c.A958T	p.T320S	CAGCTGTGTCAAA	.	111.0	29.0	91.0	1.0	.	92
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	99771859	99771859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LPPR4	NM_014839	exon7	c.1585delG	p.G529fs	CGTCCTGGGTCCT	.	99.0	29.0	89.0	0.0	.	93
LY96	23643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	74917085	74917085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LY96	NM_015364	exon2	c.G167T	p.R56I	TGAAAAGATCCAA	.	389.0	124.0	355.0	1.0	.	90
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71493190	71493190	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MAP1B	NM_005909	exon5	c.C4008T	p.Y1336Y	ACCTTACTATCAA	.	109.0	36.0	107.0	0.0	.	155
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17835870	17835870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MAP1S	NM_018174	exon4	c.C316G	p.L106V	AACCTTCTGTTGG	.	160.0	55.0	176.0	0.0	.	90
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53875041	53875041	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MAP3K12	NM_001193511	exon14	c.A2604T	p.S868S	ACAGTCTGAGTCC	.	117.0	54.0	91.0	0.0	.	604
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702858	48702858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MEX3C	NM_016626	exon2	c.G1843C	p.E615Q	TAACCTCATTCTC	.	185.0	70.0	162.0	0.0	.	659
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135206375	135206375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MGAT5	NM_002410	exon16	c.A2183T	p.D728V	GCCGGGACTTCAT	.	126.0	33.0	130.0	0.0	.	93
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90856220	90856220	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MMRN1	NM_007351	exon6	c.T1389C	p.I463I	TCACATTGTGAAT	.	269.0	97.0	264.0	0.0	.	94
MSL3	10943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11783626	11783626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MSL3	NM_078628	exon9	c.C949A	p.P317T	TTGAATCCATCCA	.	77.0	58.0	87.0	0.0	.	131
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25826056	25826056	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MTMR6	NM_004685	exon12	c.T1413A	p.P471P	GTAGAGAGGATTT	.	104.0	33.0	83.0	0.0	.	94
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18025025	18025025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MYO15A	NM_016239	exon2	c.G2911T	p.V971L	GGCCCTGTGCCAT	.	143.0	54.0	147.0	0.0	.	97
NACC2	138151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138903604	138903604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NACC2	NM_144653	exon6	c.G1522T	p.A508S	TCAGAGCCACGAT	.	36.0	13.0	31.0	0.0	.	90
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211840446	211840446	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NEK2	NM_001204183	exon7	c.T1113A	p.G371G	TCTCATACCTGGA	.	241.0	67.0	214.0	0.0	.	765
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37008169	37008169	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NIPBL	NM_015384	exon19	c.T4299C	p.C1433C	GTTGTGTGCCATT	.	241.0	77.0	248.0	0.0	.	293
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5810976	5810976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NLGN4X	NM_181332	exon6	c.C2333T	p.T778I	GTGATGGTGTTTG	.	140.0	73.0	179.0	0.0	.	195
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117698357	117698357	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NOS1	NM_000620	exon14	c.G2280C	p.A760A	GATGGTCGCTTTC	.	99.0	31.0	110.0	0.0	.	154
OPA3	80207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46032587	46032587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OPA3	NM_001017989	exon2	c.C270A	p.F90L	GGTGATGAAGATG	.	74.0	18.0	113.0	0.0	.	68
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15918464	15918464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OR10H1	NM_013940	exon1	c.C384A	p.H128Q	CAGGGGGTGGCAG	.	170.0	63.0	133.0	0.0	.	68
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45799015	45799015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OR13A1	NM_001004297	exon4	c.G856A	p.A286T	TCCCTGCGCTGTA	.	90.0	8.0	87.0	0.0	.	68
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248112914	248112914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OR2L8	NM_001001963	exon1	c.C755T	p.A252V	ACTATGCACCTTT	.	170.0	46.0	204.0	0.0	.	70
OSR2	116039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99961205	99961205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OSR2	NM_053001	exon2	c.C25T	p.P9S	CCAGCGCCCATCC	.	102.0	21.0	72.0	0.0	.	1
PAK6	56924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40564637	40564637	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PAK6	NM_001128629	exon5	c.C1071T	p.A357A	GCACGCCCAGATC	.	62.0	4.0	59.0	0.0	.	996
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102360991	102360991	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PAM	NM_001177306	exon23	c.T2642A	p.L881Q	TCCTGCTGGCCAT	.	235.0	63.0	193.0	0.0	.	68
PARK2	5071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	162206857	162206857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PARK2	NM_004562	exon7	c.A818G	p.N273S	CGATCATTGAGTC	.	156.0	46.0	156.0	0.0	.	91
PATL1	219988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59416963	59416963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PATL1	NM_152716	exon14	c.T1705G	p.L569V	CCCTTAAGTTGTC	.	203.0	67.0	222.0	0.0	.	1
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu	37	4	134072769	134072769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDH10	NM_032961	exon1	c.G1474C	p.E492Q	CGGGATGAGGGCG	.	71.0	4.0	63.0	0.0	.	92
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568592	55568592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDH15	.	.	.	.	TACCTGATTCTGA	.	210.0	58.0	250.0	0.0	.	193
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140574371	140574371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDHB10	NM_018930	exon1	c.A2246T	p.Q749L	TGTCCCAGAGCTA	.	126.0	25.0	104.0	0.0	.	92
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140811741	140811741	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDHGA12	NM_032094	exon1	c.T1415A	p.V472D	CCCTCGTCTCTGT	.	230.0	106.0	178.0	0.0	.	27
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24567763	24567763	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCK2	NM_001018073	exon4	c.C540T	p.D180D	CACTGACTCAGCC	.	99.0	29.0	82.0	0.0	.	227
PDHB	5162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	58419520	58419520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PDHB	NM_000925	exon1	c.G17A	p.G6D	ACCAAGCCAGACA	.	140.0	29.0	104.0	0.0	.	91
PLCD4	84812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219499332	219499332	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PLCD4	NM_032726	exon13	c.A1875C	p.K625N	TTTCAAAGCCCAG	.	146.0	50.0	152.0	0.0	.	661
POU4F2	5458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147561765	147561765	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	POU4F2	NM_004575	exon2	c.G1035A	p.K345K	GGAGAAGAAGCGC	.	74.0	27.0	80.0	0.0	.	135
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135825091	135825091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PPP2R3A	NM_002718	exon13	c.T3256A	p.W1086R	TCAGACTGGGACC	.	107.0	25.0	82.0	0.0	.	662
PUM1	9698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31468064	31468064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PUM1	NM_014676	exon6	c.C724T	p.P242S	CCCTTGGGCCCTG	.	210.0	75.0	187.0	1.0	.	92
R3HDM2	22864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57660557	57660557	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	R3HDM2	NM_014925	exon17	c.T2046A	p.S682S	AGAGGGAGACTGA	.	52.0	15.0	53.0	0.0	.	92
RBBP8NL	140893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60989559	60989559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_080833	exon10	c.C848T	p.S283F	TTCGGGGAGAGCT	.	77.0	22.0	75.0	0.0	.	.
RRP9	9136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51969471	51969471	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	RRP9	NM_004704	exon10	c.G858A	p.V286V	TGCAGCCACAGCG	.	83.0	32.0	78.0	0.0	.	154
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83626515	83626515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SCD5	NM_024906	exon2	c.G284A	p.R95H	CACAAGCGATGGG	.	168.0	47.0	203.0	0.0	.	91
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134494621	134494621	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SGK1	NM_001143676	exon6	c.C597T	p.I199I	CTTTCCGATCACT	.	157.0	36.0	158.0	0.0	.	981
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201399894	201399894	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SGOL2	NM_001160046	exon3	c.G309C	p.L103F	TAACTTGGTATGT	.	335.0	71.0	364.0	0.0	.	94
SLC25A29	123096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	100758804	100758804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLC25A29	NM_001039355	exon4	c.G728A	p.G243D	CGCCAGCCCTCGG	.	30.0	9.0	13.0	0.0	.	91
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92459624	92459624	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLCO3A1	NM_013272	exon2	c.G582T	p.V194V	CCCTGTGCAGCCC	.	72.0	26.0	65.0	0.0	.	91
SLFN11	91607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	33679758	33679758	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLFN11	NM_152270	exon5	c.G2323T	p.G775X	AGGTTCCCTGAAC	.	108.0	26.0	121.0	0.0	.	159
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20525746	20525746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLIT2	NM_004787	exon14	c.C1384T	p.R462C	CCCCGCCGCCTGG	.	92.0	31.0	118.0	0.0	.	521
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8732433	8732433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ST5	NM_213618	exon11	c.G2311C	p.E771Q	CATCTTCCCCAGT	.	53.0	14.0	59.0	0.0	.	227
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58449053	58449053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SYCP2	NM_014258	exon34	c.C3413T	p.S1138L	TAAGGTGATATAG	.	127.0	36.0	161.0	0.0	.	525
THADA	63892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	43801892	43801893	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	THADA	NM_001083953	exon11	c.1312_1313insTT	p.V438fs	ATTCCACAAAGAA	.	96.0	32.0	104.0	0.0	.	228
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24816121	24816121	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TNRC6A	NM_014494	exon13	c.C3933A	p.A1311A	CCAGGCCCTTGGC	.	189.0	55.0	160.0	0.0	.	92
TPTE	7179	hgsc.bcm.edu;bcgsc.ca	37	21	10906954	10906954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TPTE	NM_199261	exon24	c.T1607A	p.L536H	CCAAAAAGTATCT	.	350.0	44.0	344.0	0.0	.	344
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10906950	10906950	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TPTE	NM_199261	exon24	c.1611delT	p.F537fs	CTCGCCAAAAAGT	.	340.0	43.0	329.0	0.0	.	344
TRAIP	10293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49866583	49866584	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TRAIP	NM_005879	exon15	c.1362_1363del	p.454_455del	AAGGCACTGTCTT	.	209.0	79.0	199.0	0.0	.	849
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116632123	116632123	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TRPS1	NM_014112	exon3	c.A202C	p.N68H	TATGATTTAGTTC	.	212.0	130.0	117.0	0.0	.	229
UMPS	7372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124449404	124449404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	UMPS	NM_000373	exon1	c.A86C	p.K29T	TGCTGAAGAGCGG	.	180.0	67.0	200.0	1.0	.	227
USP16	10600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30411352	30411352	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	USP16	NM_006447	exon8	c.A738G	p.P246P	GGAACCATTAGAA	.	109.0	31.0	127.0	1.0	.	659
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77859321	77859321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	VAT1L	NM_020927	exon3	c.G542A	p.G181E	GGGAAGGGATGTC	.	108.0	34.0	146.0	0.0	.	90
VWF	7450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6145595	6145601	+	Frame_Shift_Del	DEL	CTCCTTG	CTCCTTG	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	CTCCTTG	CTCCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	VWF	NM_000552	exon19	c.2499_2505del	p.833_835del	GGCATACTCCTTG	.	78.0	19.0	83.0	0.0	.	163
WDR46	9277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33254618	33254618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	WDR46	NM_005452	exon10	c.T1069A	p.C357S	GATGACAGAGAAT	.	114.0	41.0	121.0	0.0	.	68
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38380424	38380424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_031951	exon6	c.C3770A	p.S1257Y	GTTTGGGAACCAG	.	117.0	43.0	105.0	0.0	.	.
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69973254	69973254	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	WWP2	NM_001270454	exon23	c.A2451G	p.G817G	CAACGGACCACAG	.	81.0	28.0	97.0	0.0	.	658
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21842213	21842213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	XPO7	NM_015024	exon12	c.A1334T	p.Q445L	TGGACCAGCTGTC	.	75.0	39.0	107.0	0.0	.	273
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35852656	35852656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ZMYM4	NM_005095	exon12	c.A1889G	p.Q630R	TGTCTCAGGGCCA	.	59.0	21.0	78.0	0.0	.	291
ZNF18	7566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11881942	11881942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ZNF18	NM_144680	exon9	c.T982G	p.F328V	TGAAGAAGCCCCT	.	79.0	22.0	73.0	0.0	.	90
ZNF552	79818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58319697	58319697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ZNF552	NM_024762	exon3	c.T935C	p.I312T	TGTGCAATGAGGT	.	94.0	31.0	91.0	0.0	.	90