Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44273478	44273478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AARS2	NM_020745	exon10	c.C1346T	p.P449L	TCCAAGGGGAGTC	.	339.0	90.0	211.0	0.0	.	91
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	44073229	44073229	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACCSL	NM_001031854	exon5	c.T732A	p.S244S	CTGCTCTGTCTTC	.	234.0	10.0	152.0	0.0	.	95
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20494379	20494379	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACSM2A	NM_001010845	exon14	c.1510-1G>A	.	TTTGCAGGTGGTG	.	199.0	46.0	137.0	0.0	.	91
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79479128	79479128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACTG1	NM_001614	exon3	c.G164T	p.G55V	TCGTCGCCCACGT	.	68.0	16.0	43.0	0.0	.	91
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236850058	236850058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACTN2	NM_001103	exon1	c.G85A	p.D29N	GACCGCGACCTGC	.	157.0	11.0	92.0	0.0	.	95
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	148657133	148657133	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACVR2A	NM_001616	exon3	c.C370T	p.Q124X	GTCACACAGCGTA	.	55.0	17.0	19.0	0.0	.	831
AKR1E2	83592	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	4875659	4875659	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AKR1E2	NM_001271021	exon3	c.324+1G>T	.	TTCAAGGTACCGT	.	274.0	57.0	232.0	1.0	.	68
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283832	74283834	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ALB	NM_000477	exon12	c.1456_1458del	p.486_486del	TTATGTGTGTTGC	.	96.0	20.0	55.0	0.0	.	96
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83357541	83357541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AP3B2	NM_004644	exon4	c.G307C	p.E103Q	GCTGCTCCTCAGC	.	170.0	31.0	152.0	0.0	.	94
APOC3	345	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116703552	116703552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	APOC3	NM_000040	exon4	c.C252G	p.F84L	TGAGTTCTGGGAT	.	179.0	59.0	159.0	1.0	.	68
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156937793	156937793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF11	NM_198236	exon11	c.T949G	p.S317A	CGGTTGAGGGGAC	.	173.0	37.0	152.0	0.0	.	233
ARHGEF18	23370	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7504866	7504866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF18	NM_001130955	exon1	c.G40T	p.A14S	AGACCCGCTGCTT	.	97.0	33.0	127.0	1.0	.	228
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155932460	155932460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF2	NM_001162383	exon9	c.G1025A	p.C342Y	CGGCTGCAGAACT	.	287.0	22.0	181.0	0.0	.	228
ATG4B	23192	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242592932	242592932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_178326	exon4	c.A190G	p.T64A	GGGGGGACAGGCC	.	204.0	42.0	207.0	2.0	.	.
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193029676	193029676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP13A5	NM_198505	exon20	c.T2374C	p.C792R	GGTAACAGCTTCC	.	176.0	29.0	92.0	0.0	.	144
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	26586735	26586735	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP8A2	NM_016529	exon36	c.C3444A	p.G1148G	CCGGGGCAGCTCC	.	61.0	35.0	38.0	0.0	.	138
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50273555	50273555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP9A	NM_006045	exon14	c.C1428A	p.N476K	CACACCGTTGGAC	.	209.0	22.0	152.0	0.0	.	94
AUP1	550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74754135	74754135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AUP1	NM_181575	exon11	c.A1129G	p.K377E	AAGACTTGGCAAA	.	105.0	5.0	54.0	0.0	.	90
B3GNT2	10678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62449528	62449528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	B3GNT2	NM_006577	exon2	c.A173T	p.Y58F	AGGCATACTGGAA	.	115.0	12.0	101.0	0.0	.	23
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122747089	122747089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	BBS7	NM_176824	exon19	c.A2074G	p.K692E	GTACTTTAGTTTT	.	37.0	10.0	18.0	0.0	.	91
BTBD19	149478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45278683	45278683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001136537	exon5	c.G430A	p.G144S	ACCTTTGGCCTGG	.	187.0	47.0	154.0	1.0	.	.
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	159797621	159797621	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	C1QTNF2	NM_031908	exon1	c.G24T	p.P8P	GAGCGTCGGCCCC	.	39.0	14.0	18.0	0.0	.	91
C20orf166-AS1	253868	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	61143534	61143534	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	CCGGGGCGTGTGT	.	55.0	27.0	36.0	0.0	.	.
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6693493	6693493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	C3	NM_000064	exon25	c.A3160G	p.T1054A	GCTGGGTGTACCC	.	40.0	21.0	29.0	0.0	.	95
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	122526154	122526154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CADPS2	NM_001167940	exon1	c.G238C	p.E80Q	TCCGCTCCTGCTC	.	143.0	29.0	94.0	0.0	.	94
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34101204	34101204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CAPRIN1	NM_203364	exon7	c.G718A	p.V240I	GAGCGTGTTTTTC	.	72.0	19.0	82.0	0.0	.	91
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	30863308	30863308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CAPRIN2	NM_001002259	exon18	c.C2912T	p.T971I	ACAGGGGTCATGC	.	184.0	16.0	128.0	0.0	.	92
CCDC91	55297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	28459739	28459739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CCDC91	NM_018318	exon4	c.A332G	p.K111R	ATGAAAAAAGTAA	.	77.0	28.0	52.0	0.0	.	90
CEP76	79959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12699183	12699183	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CEP76	NM_024899	exon4	c.G315A	p.R105R	ATACCTCCGTGTT	.	104.0	24.0	65.0	0.0	.	90
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50863255	50863255	+	Silent	SNP	C	C	T	rs201580702	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHAT	NM_020549	exon12	c.C1749T	p.A583A	GAGAGCCGTGACT	.	192.0	61.0	120.0	0.0	C|0.999;G|0.001	514
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	146757007	146757008	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHD1L	NM_004284	exon17	c.1861_1862insT	p.I621fs	GTTCTCATCCCAG	.	351.0	40.0	149.0	0.0	.	231
CHL1	10752	bcgsc.ca;mdanderson.org	37	3	433400	433400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHL1	NM_001253388	exon21	c.A2834C	p.K945T	TTGATAAAGACAC	.	66.0	21.0	41.0	1.0	.	583
CHM	1121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85302520	85302520	+	Missense_Mutation	SNP	G	G	A	rs201252021		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHM	NM_001145414	exon1	c.C17T	p.P6L	TCCGAAGGGAGAG	.	188.0	117.0	154.0	0.0	.	131
CHST12	55501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	2472325	2472325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHST12	NM_018641	exon2	c.C51A	p.F17L	GGTGTTCATGATC	.	87.0	46.0	40.0	0.0	.	226
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189927932	189927932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	COL5A2	NM_000393	exon27	c.G1835A	p.G612E	ATGCTCCCGGGCT	.	41.0	14.0	19.0	0.0	.	92
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	283.0	83.0	182.0	0.0	.	24361
CYP4F2	8529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16000329	16000329	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	CYP4F2,NS,carcinoma,-2	CYP4F2	NM_001082	exon7	c.G822A	p.R274R	GCGGCGCCGCTCC	.	270.0	110.0	185.0	2.0	.	92
DBN1	1627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176885388	176885388	+	Missense_Mutation	SNP	C	C	A	rs142184479	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DBN1	NM_080881	exon13	c.G1453T	p.G485W	CTTCCCCGTTGCC	.	212.0	85.0	158.0	1.0	C|1.000;T|0.000	587
DCHS1	8642	broad.mit.edu;mdanderson.org	37	11	6651029	6651029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DCHS1	NM_003737	exon11	c.G4909A	p.V1637I	CACTGACGGTCAG	.	39.0	7.0	48.0	1.0	.	73
DCLK2	166614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151168791	151168791	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DCLK2	NM_001040261	exon14	c.C1866A	p.I622I	CCAGATCTTGGCT	.	107.0	40.0	68.0	1.0	.	300
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42763420	42763420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DGKH	NM_001204504	exon16	c.G1887T	p.R629S	AGTGAGGCAAGTC	.	116.0	31.0	88.0	0.0	.	652
DHX30	22907	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47888778	47888778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DHX30	NM_138615	exon12	c.G1945A	p.A649T	GAATGCGCACTCG	.	298.0	20.0	248.0	1.0	.	228
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38138132	38138132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DLEC1	NM_007337	exon15	c.A2244T	p.K748N	GGTGAAAGGCTCA	.	133.0	48.0	90.0	0.0	.	161
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6566625	6566625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DNHD1	NM_144666	exon21	c.A4456G	p.K1486E	CTGCCCAAGCAAA	.	181.0	47.0	156.0	0.0	.	24
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128796464	128796464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK1	NM_001380	exon8	c.G718A	p.A240T	GAAGATGCTGAAG	.	214.0	60.0	230.0	1.0	.	698
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129216713	129216713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK1	NM_001380	exon45	c.G4537T	p.D1513Y	CACCTGGATGACC	.	96.0	33.0	77.0	0.0	.	698
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111517084	111517084	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK4	NM_014705	exon18	c.1744+2T>C	.	TACATTACCATTT	.	87.0	6.0	41.0	0.0	.	26
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83866961	83866961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOPEY1	NM_015018	exon35	c.T6665C	p.L2222P	TGTTCCTGTTTTT	.	106.0	7.0	78.0	0.0	.	155
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29115251	29115251	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DSG2	NM_001943	exon10	c.T1299C	p.D433D	AGAAGATAGAGAT	.	81.0	19.0	88.0	0.0	.	563
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28971168	28971168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DSG4	NM_001134453	exon7	c.A812C	p.K271T	TAGAGAAAACTTC	.	93.0	30.0	50.0	0.0	.	177
EML3	256364	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62376466	62376466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EML3	NM_153265	exon7	c.A897G	p.R299R	GTAATGTCTCTGG	.	140.0	39.0	100.0	2.0	.	91
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220174520	220174520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EPRS	NM_004446	exon17	c.G2141T	p.G714V	TTTGACCCTGATG	.	249.0	65.0	123.0	0.0	.	92
FAM58A	92002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152858107	152858107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FAM58A	.	.	.	.	GCAGGGCCCAGGC	.	79.0	52.0	78.0	2.0	.	130
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127674670	127674670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FBN2	NM_001999	exon26	c.T3427C	p.F1143L	CTTCGAAGCACTC	.	326.0	21.0	219.0	0.0	.	146
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	157494326	157494326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FCRL5	NM_031281	exon10	c.T1982A	p.L661H	AAGGTGAGGATGG	.	271.0	16.0	140.0	0.0	.	156
FGGY	55277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	59844499	59844499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FGGY	NM_001113411	exon5	c.G544A	p.V182I	ACAGGTGTCACAG	.	80.0	5.0	71.0	0.0	.	69
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu	37	14	86089799	86089799	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FLRT2	NM_013231	exon2	c.C1941G	p.Y647X	GCGATACTGCAAC	.	94.0	6.0	92.0	0.0	.	94
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51758078	51758078	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GALNT6	NM_007210	exon6	c.G876A	p.V292V	CACCACCACTGTC	.	219.0	65.0	174.0	0.0	.	92
GANC	2595	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42646624	42646624	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GANC	.	.	.	.	CAGTTTAAAAACA	.	288.0	117.0	185.0	0.0	.	92
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85909939	85909939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GHITM	NM_014394	exon7	c.T721C	p.F241L	GAAAAGTTTCTGA	.	167.0	20.0	121.0	1.0	.	90
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	121747481	121747481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GLI2	NM_005270	exon13	c.T3991A	p.S1331T	GCAGCCTCCATGA	.	181.0	10.0	162.0	0.0	.	954
GLTSCR1	29998	broad.mit.edu;mdanderson.org	37	19	48182830	48182830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GLTSCR1	NM_015711	exon6	c.C403T	p.Q135X	ACCCTGCAGCCTG	.	10.0	4.0	8.0	0.0	.	48
GPR133	283383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131622709	131622709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR133	NM_198827	exon24	c.A2464G	p.K822E	AAAACCAAGGTCT	.	94.0	16.0	87.0	1.0	.	191
GPR135	64582	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59930690	59930690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR135	NM_022571	exon1	c.G1255T	p.G419C	CCGGGCCCTGGCT	.	88.0	30.0	87.0	1.0	.	90
GPR19	2842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12815347	12815347	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR19	NM_006143	exon4	c.A36G	p.P12P	CAAATGTGGCTTG	.	66.0	9.0	60.0	0.0	.	91
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	47073042	47073042	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GRAMD4	NM_015124	exon18	c.1633-2A>T	.	CCTGCCAGCCGCT	.	93.0	6.0	71.0	0.0	.	23
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18688299	18688299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HDAC9	NM_178425	exon10	c.T1460A	p.M487K	TCCACATGAACAA	.	144.0	42.0	78.0	0.0	.	227
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191159323	191159323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HIBCH	NM_014362	exon4	c.A253G	p.I85V	TTATAATGATCAG	.	81.0	8.0	57.0	0.0	.	90
HIST1H1B	3009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27834746	27834746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HIST1H1B	NM_005322	exon1	c.A562G	p.K188E	GACTCTTGGTTGC	.	138.0	30.0	90.0	0.0	.	585
HK3	3101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176318451	176318451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HK3	NM_002115	exon3	c.C197T	p.A66V	GGGCTGGCCTGTC	.	143.0	11.0	110.0	0.0	.	294
IGF2BP3	10643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23353255	23353255	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IGF2BP3	NM_006547	exon13	c.T1413C	p.Y471Y	TTTTCCATAAATT	.	81.0	38.0	35.0	0.0	.	92
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102836404	102836404	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IL1RL2	NM_003854	exon8	c.A918G	p.K306K	AGTGAAAATGGAA	.	156.0	65.0	93.0	0.0	.	92
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	124592297	124592297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ITGB5	NM_002213	exon2	c.A152G	p.K51R	ACCTCTTTGGAGC	.	172.0	9.0	147.0	0.0	.	227
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52824922	52824922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ITIH1	NM_002215	exon20	c.A2479G	p.T827A	GCCCGGACGCACG	.	152.0	45.0	152.0	0.0	.	93
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41766715	41766715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KBTBD7	NM_032138	exon1	c.A1679G	p.Q560R	ACAATCTGGTAGT	.	187.0	52.0	155.0	0.0	.	91
KCNA7	3743	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49573780	49573780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCNA7	NM_031886	exon2	c.C911T	p.T304M	CGAAGCGTCTGGC	.	133.0	10.0	115.0	1.0	.	90
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84270993	84270993	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCNG4	NM_172347	exon2	c.G99T	p.T33T	GGACGGCGTCTCC	.	136.0	43.0	119.0	1.0	.	93
KCP	375616	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	128531548	128531548	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCP	.	.	.	.	GGGAAGTCCGCTC	.	41.0	13.0	42.0	0.0	.	68
KIAA1407	57577	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113753775	113753775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIAA1407	NM_020817	exon6	c.A815C	p.K272T	TACATTTTCCATG	.	109.0	38.0	79.0	1.0	.	92
KIAA1644	85352	broad.mit.edu;mdanderson.org	37	22	44681359	44681359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIAA1644	NM_001099294	exon4	c.G548T	p.R183L	TCTCCCCGCAATG	.	126.0	9.0	131.0	0.0	.	23
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72342641	72342641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIF19	NM_153209	exon8	c.G902T	p.S301I	GCGACAGCAAGCT	.	303.0	166.0	168.0	0.0	.	90
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126062722	126062722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KLF15	NM_014079	exon3	c.G1099A	p.E367K	ACAGCTCGTCAGA	.	74.0	32.0	56.0	0.0	.	91
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53189359	53189359	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KRT3	NM_057088	exon1	c.C468T	p.G156G	AGGACTGCCCAAG	.	174.0	65.0	118.0	0.0	.	90
KRTAP6-3	337968	broad.mit.edu;bcgsc.ca	37	21	31964988	31964988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_181605	exon1	c.G224C	p.G75A	ACAGAGGCCTGGA	.	173.0	13.0	131.0	1.0	.	.
KRTAP6-3	337968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	31964987	31964987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_181605	exon1	c.G223C	p.G75R	TACAGAGGCCTGG	.	175.0	13.0	132.0	1.0	.	.
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54967843	54967843	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LENG8	NM_052925	exon11	c.C1474A	p.R492R	CGCAGTCGAAAGA	.	93.0	29.0	60.0	0.0	.	91
LRCH3	84859	broad.mit.edu;bcgsc.ca	37	3	197592322	197592322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LRCH3	NM_032773	exon16	c.G1745T	p.S582I	TATTAAGTTCACC	.	218.0	9.0	142.0	1.0	.	91
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196387008	196387008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LRRC33	NM_198565	exon3	c.C494T	p.A165V	CCCTGGCGGGGAA	.	93.0	50.0	70.0	0.0	.	92
LRRC72	100506049	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	16598540	16598540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001195280	exon5	c.A343G	p.I115V	TTGCATATACTCC	.	300.0	69.0	158.0	0.0	.	.
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	33246001	33246001	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LTBP1	NM_206943	exon3	c.T591C	p.N197N	TCAGAATGGAGGG	.	133.0	8.0	85.0	0.0	.	230
MAN1C1	57134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	25944335	25944335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MAN1C1	NM_020379	exon1	c.G47A	p.G16E	CGTGGGGGCTGCG	.	53.0	20.0	69.0	0.0	.	91
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	10403536	10403536	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MARCH6	NM_005885	exon15	c.T1215A	p.T405T	TGCTACTCTGAAA	.	176.0	12.0	108.0	0.0	.	501
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141764227	141764227	+	Silent	SNP	T	T	C	rs3087317		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MGAM	NM_004668	exon37	c.T4389C	p.C1463C	CCTTTGTATGGAG	.	158.0	11.0	102.0	0.0	.	70
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4446343	4446343	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MYBBP1A	NM_014520	exon20	c.C2757T	p.T919T	GAGGGCGGTGGGG	.	85.0	7.0	54.0	0.0	.	92
NCOA6	23054	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33334661	33334661	+	Missense_Mutation	SNP	T	T	G	rs17092079	byfrequency;alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NCOA6	NM_014071	exon10	c.A2864C	p.N955T	TCCAAGTTAATTC	.	58.0	6.0	59.0	0.0	T|0.927;C|0.073	292
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29885446	29885446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NEFH	NM_021076	exon4	c.C1817A	p.S606Y	CCAAGTCCCCAGT	.	217.0	61.0	155.0	0.0	.	90
NFASC	23114	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204970404	204970404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFASC	NM_001005388	exon26	c.G3126C	p.E1042D	GGTTGAGTACATC	.	297.0	25.0	198.0	2.0	.	139
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu	37	2	178098968	178098968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFE2L2	NM_006164	exon2	c.A77C	p.Q26P	ATATCTTGCCTCC	.	64.0	4.0	34.0	0.0	.	90
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41048594	41048594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFYA	NM_002505	exon3	c.G120A	p.Q40Q	GGCCCAGGTGGCA	.	134.0	42.0	70.0	0.0	.	226
NKX3-1	4824	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23538852	23538852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NKX3-1	NM_006167	exon2	c.C587T	p.S196F	GGCAAAGAGGAGT	.	38.0	18.0	59.0	1.0	.	90
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247599337	247599337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NLRP3	NM_004895	exon6	c.A2564G	p.H855R	CCAGCCATTCCCT	.	277.0	48.0	138.0	0.0	.	674
NPL	80896	hgsc.bcm.edu;broad.mit.edu	37	1	182794948	182794948	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NPL	NM_001200052	exon11	c.C686G	p.S229X	TGTTGTCAAACTA	.	44.0	5.0	20.0	0.0	.	92
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50464017	50464017	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NRXN1	NM_001135659	exon19	c.G3576T	p.L1192L	TATGGCCAGTCTG	.	268.0	71.0	196.0	1.0	.	92
NUDT12	83594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102895039	102895039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUDT12	NM_031438	exon3	c.G337A	p.E113K	CCACTTCATTCGT	.	143.0	35.0	67.0	0.0	.	90
NUFIP1	26747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45563368	45563368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUFIP1	NM_012345	exon1	c.204delC	p.P68fs	CTCCATGGGGGGC	.	38.0	11.0	39.0	0.0	.	90
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229596501	229596502	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP133	NM_018230	exon20	c.2701_2702insT	p.L901fs	GGAAGAGAAAGTC	.	130.0	33.0	65.0	0.0	.	271
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131762026	131762026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP188	NM_015354	exon34	c.A3785T	p.K1262M	AGGACAAGGACAG	.	138.0	9.0	136.0	0.0	.	207
NUP93	9688	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56868090	56868090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP93	NM_014669	exon14	c.C1588T	p.R530W	TTCGTGCGGCTCC	.	91.0	25.0	80.0	1.0	.	205
NXF5	55998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101095774	101095774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NXF5	NM_032946	exon9	c.C574G	p.L192V	TGGAGAGATTCAG	.	293.0	54.0	234.0	0.0	.	204
NXPE2	120406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	114577377	114577377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_182495	exon6	c.A1405C	p.I469L	ATCAATATTCAAA	.	147.0	8.0	125.0	0.0	.	.
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220432567	220432567	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OBSL1	NM_001173431	exon3	c.G1407T	p.P469P	GATGACCGGCAGC	.	276.0	109.0	257.0	1.0	.	71
OLIG3	167826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137815097	137815097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OLIG3	NM_175747	exon1	c.A211G	p.K71E	TGATTTTGTACTT	.	130.0	7.0	100.0	0.0	.	68
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331510	107331510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR13C8	NM_001004483	exon1	c.C62A	p.P21Q	CCCACCCAAAGCT	.	55.0	11.0	51.0	0.0	.	70
OR1C1	26188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247921053	247921053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR1C1	NM_012353	exon1	c.G656T	p.G219V	ATAAGTCCATAAG	.	180.0	39.0	119.0	0.0	.	91
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180166721	180166721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR2Y1	NM_001001657	exon1	c.T338G	p.V113G	AGGAGCACACACT	.	141.0	13.0	105.0	0.0	.	68
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122418685	122418685	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PARP14	NM_017554	exon6	c.A1284T	p.T428T	TGATACACTTAAG	.	140.0	31.0	87.0	0.0	.	525
PCDHGC3	5098	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140856170	140856170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PCDHGC3	NM_032402	exon1	c.G487T	p.D163Y	GATCCCGATGTGG	.	274.0	27.0	197.0	2.0	.	24
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17815276	17815276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PCM1	NM_006197	exon13	c.A2032G	p.M678V	GTTGCTATGGTAC	.	69.0	8.0	98.0	0.0	.	742
PDCL2	132954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56422846	56422846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_152401	exon6	c.A604T	p.I202L	TCTGTATTGCTCC	.	87.0	25.0	72.0	0.0	.	.
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	22442575	22442575	+	Missense_Mutation	SNP	T	T	A	rs2294049		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDLIM2	NM_021630	exon5	c.T1111A	p.S371T	AGGTCCTCCTACT	.	192.0	12.0	192.0	0.0	T|1.000;|0.000	90
PDPR	55066	hgsc.bcm.edu;broad.mit.edu	37	16	70170122	70170122	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDPR	NM_017990	exon10	c.G1023A	p.R341R	TCTGAGGAGGATG	.	158.0	7.0	148.0	0.0	.	135
PECR	55825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	216946374	216946397	+	In_Frame_Del	DEL	CGATGCCCGTGGCCCCGCCGGTGA	CGATGCCCGTGGCCCCGCCGGTGA	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	CGATGCCCGTGGCCCCGCCGGTGA	CGATGCCCGTGGCCCCGCCGGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PECR	NM_018441	exon1	c.68_91del	p.23_31del	CTTTTCCGATGCC	.	227.0	42.0	184.0	0.0	.	90
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8047144	8047144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PER1	NM_002616	exon19	c.A2512G	p.K838E	TGGCTTTGGATCG	.	41.0	6.0	36.0	0.0	.	723
PFKFB2	5208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207241653	207241653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PFKFB2	NM_001018053	exon10	c.C986T	p.A329V	TTGATGCTGTGAG	.	89.0	6.0	48.0	0.0	.	91
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	17141377	17141377	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PIK3C2A	NM_002645	exon15	c.G2802A	p.W934X	TGCAGGCCACTGG	.	116.0	40.0	94.0	0.0	.	1310
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95791740	95791740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PLCE1	NM_016341	exon2	c.G937A	p.D313N	GAAGAAGACGCTT	.	84.0	8.0	77.0	0.0	.	229
POU5F1B	5462	hgsc.bcm.edu;mdanderson.org	37	8	128428181	128428181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001159542	exon1	c.G70T	p.G24W	CCATGGGGGGCGG	.	19.0	4.0	11.0	0.0	.	.
PRSS1	5644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142458441	142458441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PRSS1	NM_002769	exon2	c.G76A	p.G26R	ATCGTTGGGGGCT	.	551.0	62.0	326.0	1.0	.	577
PSKH1	5681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67943502	67943502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PSKH1	NM_006742	exon2	c.G850T	p.G284C	GCGCTGGGCGTCA	.	130.0	38.0	104.0	0.0	.	333
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102988211	102988211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PSMC2	NM_001204453	exon1	c.A53C	p.D18A	AGAAGGACGACAA	.	181.0	79.0	155.0	0.0	.	90
PTCHD2	57540	ucsc.edu;bcgsc.ca	37	1	11589684	11589684	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTCHD2	NM_020780	exon14	c.T2870G	p.L957R	GCTGCCTGCTTAG	.	415.0	126.0	288.0	2.0	.	209
PTP4A3	11156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142435203	142435203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTP4A3	NM_032611	exon2	c.A161T	p.D54V	CCTATGACAAAAC	.	127.0	26.0	69.0	0.0	.	226
PTPN9	5780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75782644	75782644	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTPN9	NM_002833	exon9	c.969-2A>T	.	GAGACCTGAAGGA	.	114.0	26.0	79.0	1.0	.	226
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70988332	70988332	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTPRB	NM_001109754	exon6	c.G1431A	p.G477G	GGTCAGCCCGTGA	.	290.0	82.0	222.0	0.0	.	226
QRFPR	84109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122301704	122301704	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	QRFPR	NM_198179	exon1	c.G99C	p.P33P	GACGAGCGGTCGC	.	82.0	22.0	91.0	1.0	.	90
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79350802	79350802	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RASGRF1	NM_001145648	exon3	c.G405A	p.E135E	CTCATGCTCTGTG	.	154.0	46.0	97.0	0.0	.	662
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu	37	8	94747568	94747568	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RBM12B	NM_203390	exon3	c.A1071G	p.P357P	AGAAATTGGATCA	.	78.0	4.0	33.0	0.0	.	90
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24618693	24618693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RNF31	NM_017999	exon6	c.G710T	p.C237F	CCCTGTGTCCAGC	.	151.0	44.0	106.0	0.0	.	90
ROR2	4920	hgsc.bcm.edu;mdanderson.org	37	9	94495598	94495598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ROR2	NM_004560	exon6	c.C743G	p.P248R	TCACGCGGCTTGG	.	26.0	10.0	25.0	0.0	.	1471
RPRD1A	55197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33573185	33573185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RPRD1A	NM_018170	exon7	c.T868C	p.S290P	ATCGAGATAAGTC	.	127.0	40.0	101.0	0.0	.	154
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137300011	137300011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RXRA	NM_002957	exon3	c.A296G	p.N99S	CTATGAACCCCGT	.	150.0	49.0	118.0	1.0	.	188
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33855053	33855053	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RYR3	NM_001243996	exon11	c.T988A	p.L330I	GAGAAATTAGACT	.	98.0	33.0	66.0	1.0	.	520
SARS2	54938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39421333	39421333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SARS2	NM_001145901	exon1	c.G44A	p.R15H	CCCCGACGAGTCA	.	67.0	33.0	56.0	0.0	.	93
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76994169	76994169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SCAPER	NM_020843	exon19	c.G2438C	p.G813A	TTTCTCCCTTTAA	.	63.0	17.0	52.0	0.0	.	137
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38622799	38622799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SCN5A	NM_001160160	exon17	c.G2851A	p.D951N	CCTCATCAGGGGC	.	316.0	29.0	219.0	0.0	.	98
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4091432	4091432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SDK1	NM_152744	exon19	c.A2881T	p.T961S	CCCAGCACACCTC	.	193.0	16.0	127.0	0.0	.	138
SDK2	54549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71443757	71443757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SDK2	NM_001144952	exon5	c.G610A	p.E204K	TACTCTCCACGGT	.	464.0	61.0	236.0	1.0	.	24
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83643576	83643576	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SEMA3A	NM_006080	exon7	c.T759C	p.D253D	TTCTCCATCTATT	.	100.0	46.0	64.0	0.0	.	156
SERPINC1	462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173880936	173880936	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SERPINC1	NM_000488	exon4	c.624+1G>A	.	AACTCACCTTGAA	.	180.0	71.0	126.0	0.0	.	227
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26706735	26706735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SEZ6L	NM_021115	exon7	c.C1614A	p.N538K	AGGCAACACCATC	.	194.0	58.0	182.0	0.0	.	95
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49254841	49254841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SHC4	NM_203349	exon1	c.C372A	p.D124E	ACCTGGGTCCCGG	.	100.0	37.0	68.0	0.0	.	95
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48533795	48533795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC12A1	NM_001184832	exon10	c.A1299G	p.V433V	TTGTGTAGGTAAG	.	167.0	58.0	100.0	0.0	.	24
SLC18A2	6571	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003680	119003680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC18A2	NM_003054	exon3	c.T320C	p.V107A	ACATGGTGACCAA	.	176.0	20.0	163.0	1.0	.	90
SLC22A18AS	5003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2920824	2920824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_007105	exon3	c.G108C	p.R36S	CCGCTTCCTCTGG	.	66.0	17.0	49.0	0.0	.	.
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62768191	62768191	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC22A8	NM_004254	exon4	c.437+1G>T	.	GTCTCACCTGTCA	.	184.0	8.0	125.0	0.0	.	93
SLC24A2	25769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19528053	19528053	+	Silent	SNP	C	C	T	rs201117303		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC24A2	NM_020344	exon8	c.G1563A	p.A521A	CTGGTGCGCCCAC	.	112.0	42.0	98.0	1.0	C|0.999;T|0.000	517
SNRPN	6638	broad.mit.edu;bcgsc.ca	37	15	25221503	25221503	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SNRPN	NM_022807	exon9	c.G207T	p.L69L	GGGTCTGGTGTTG	.	157.0	7.0	128.0	1.0	.	469
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39249927	39249927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SOS1	NM_005633	exon10	c.A1642G	p.S548G	GTGTACTCCGGTA	.	123.0	43.0	69.0	0.0	.	851
SPCS2	9789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74676881	74676881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPCS2	NM_014752	exon3	c.C272A	p.S91Y	CAATCTCCTGTTT	.	68.0	22.0	66.0	0.0	.	113
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47381502	47381502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPI1	NM_001080547	exon3	c.C235A	p.P79T	GCGGGGGCTGCAC	.	28.0	9.0	23.0	0.0	.	226
SUN1	23353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	905675	905675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SUN1	NM_001130965	exon16	c.T1951G	p.F651V	TGGTACTTCTCGC	.	189.0	87.0	82.0	0.0	.	90
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27023949	27023949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SUPT6H	NM_003170	exon30	c.G4058A	p.G1353D	ACCAGGGTGATGT	.	265.0	91.0	183.0	0.0	.	93
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64457170	64457170	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SYNE2	NM_182914	exon20	c.A2355G	p.A785A	TATGGCAAGAAGT	.	144.0	18.0	139.0	0.0	.	164
SYNPR	132204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	63594864	63594864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001130003	exon5	c.G472A	p.G158R	GCAAAAGGACTGT	.	219.0	64.0	172.0	1.0	.	.
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55686689	55686689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SYT5	NM_003180	exon6	c.G559T	p.G187W	TGCCCCCCAGCTC	.	56.0	12.0	35.0	0.0	.	90
TAAR9	134860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132859671	132859671	+	RNA	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	CTTGGTGGGAGTC	.	312.0	119.0	205.0	0.0	.	.
TBX20	57057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35242186	35242186	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TBX20	NM_001077653	exon8	c.G1200T	p.S400S	AATGGCCGATGGT	.	425.0	95.0	270.0	1.0	.	90
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62248484	62248484	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TEX2	NM_018469	exon7	c.T2668A	p.F890I	GCTTGAAGGCCTG	.	219.0	30.0	131.0	0.0	.	91
TEX26	122046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	31549019	31549019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_152325	exon7	c.G845A	p.C282Y	CTCACTGTGACAC	.	101.0	20.0	58.0	0.0	.	.
TGFB1I1	7041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31487440	31487440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TGFB1I1	NM_001042454	exon8	c.C822A	p.F274L	CCCCTTCTGCCCC	.	76.0	19.0	63.0	0.0	.	90
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137990568	137990568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	THSD7B	.	.	.	.	GGGGCCCTTGTTC	.	344.0	86.0	227.0	1.0	.	75
TICAM1	148022	broad.mit.edu;mdanderson.org	37	19	4818030	4818030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TICAM1	NM_182919	exon2	c.A360C	p.E120D	GACGGCTTCCTGG	.	30.0	5.0	36.0	0.0	.	153
TMEM194B	100131211	broad.mit.edu;bcgsc.ca	37	2	191383480	191383480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001142645	exon4	c.A500G	p.Y167C	CTTGCATAAAAGA	.	113.0	6.0	90.0	0.0	.	.
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24834929	24834929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TNRC6A	NM_014494	exon25	c.T5690G	p.L1897R	CCGATCTCAATCA	.	138.0	27.0	122.0	0.0	.	92
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32036335	32036335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TNXB	NM_019105	exon17	c.C6052G	p.L2018V	GGACCAGGAAGTG	.	239.0	37.0	163.0	0.0	.	90
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230632438	230632438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TRIP12	NM_004238	exon41	c.A5811T	p.T1937T	GACAATTGTCAAA	.	71.0	18.0	37.0	0.0	.	572
UPF3A	65110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115052106	115052106	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	UPF3A	NM_080687	exon4	c.532+2T>C	.	CATTGGTCTGTTT	.	237.0	23.0	175.0	0.0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	216371756	216371756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USH2A	NM_007123	exon18	c.G3982A	p.G1328S	CCAAGCCAGTGAT	.	191.0	13.0	115.0	0.0	.	115
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216040372	216040372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USH2A	NM_206933	exon44	c.T8822C	p.I2941T	ACGTCGATGGCTG	.	218.0	22.0	127.0	0.0	.	115
USP17L2	377630	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	11995368	11995368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USP17L2	NM_201402	exon1	c.T902C	p.L301P	ATGTCAAGGCACT	.	220.0	22.0	176.0	0.0	.	435
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12409576	12409576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	VWDE	NM_001135924	exon12	c.G2356T	p.D786Y	GTACATCCTCAGC	.	158.0	65.0	112.0	0.0	.	68
WIZ	58525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15538010	15538010	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	WIZ	NM_021241	exon4	c.C864T	p.G288G	GGGGCTGCCCGGT	.	107.0	34.0	94.0	1.0	.	68
XPO6	23214	broad.mit.edu;ucsc.edu	37	16	28167815	28167815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	XPO6	NM_015171	exon7	c.G677A	p.S226N	GCTGAACTGGGAC	.	93.0	11.0	64.0	1.0	.	227
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100364744	100364744	+	RNA	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZAN	.	.	.	.	GGTCCAGGTCCCA	.	196.0	24.0	141.0	0.0	.	142
ZBTB4	57659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7370078	7370078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZBTB4	NM_001128833	exon3	c.G43A	p.A15T	GGACGGCGGGGGC	.	45.0	13.0	40.0	0.0	.	93
ZC3H10	84872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56515237	56515237	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZC3H10	NM_032786	exon3	c.C891T	p.P297P	GGCCCCCACTGTG	.	85.0	33.0	91.0	1.0	.	90
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44980916	44980916	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF180	NM_013256	exon5	c.A1782T	p.V594V	CTGATGTACAACA	.	92.0	39.0	62.0	0.0	.	92
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97917317	97917317	+	RNA	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF518A	.	.	.	.	GTTCAGGTTTCAT	.	196.0	47.0	131.0	0.0	.	23
ZNF658	26149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	40773313	40773313	+	Silent	SNP	C	C	A	rs138850783	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF658	NM_033160	exon5	c.G1962T	p.G654G	TTTCTCCCCTGTG	.	130.0	20.0	134.0	1.0	C|1.000;G|0.000	45
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	22940610	22940610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF99	NM_001080409	exon4	c.G2101T	p.G701X	TCTTTCCAGTATG	.	33.0	9.0	21.0	0.0	.	24
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22940609	22940609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF99	NM_001080409	exon4	c.G2102T	p.G701V	TTCTTTCCAGTAT	.	33.0	9.0	21.0	0.0	.	24
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6495192	6495193	+	Missense_Mutation	DNP	CC	CC	GG	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	p.E440Q	CCTCCTCCGCCTC	.	164.0	35.0	142.0	0.0	.	.