Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC10	89845	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	43413441	43413441	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC10	NM_001198934	exon15	c.C3135A	p.I1045I	CAACATCCTCCTG	.	253.0	102.0	258.0	0.0	.	96
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42854589	42854589	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM11	NM_002390	exon21	c.G1737C	p.G579G	GCGTGGGAGCTGT	.	69.0	19.0	68.0	0.0	.	227
ADAMTS9	56999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	64536638	64536638	+	Missense_Mutation	SNP	C	C	T	rs140575639		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS9	NM_182920	exon31	c.G4799A	p.R1600Q	ACCGGCCGCTTGC	.	225.0	72.0	143.0	0.0	C|1.000;T|0.000	230
ADAMTSL3	57188	hgsc.bcm.edu;bcgsc.ca	37	15	84539614	84539614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTSL3	NM_207517	exon9	c.T863C	p.V288A	CCGGCGTCTTTCT	.	32.0	4.0	40.0	0.0	.	1153
ADGB	79747	hgsc.bcm.edu;bcgsc.ca	37	6	147049711	147049711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_024694	exon20	c.A2354G	p.E785G	CACAGGAGAGCTG	.	94.0	5.0	88.0	0.0	.	.
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	105418939	105418939	+	Missense_Mutation	SNP	G	G	A	rs137934113	by1000genomes	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHNAK2	NM_138420	exon7	c.C2849T	p.A950V	ACTTCCGCCTTGG	.	301.0	104.0	194.0	0.0	G|0.998;A|0.002	47
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21328152	21328152	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIFM3	NM_001146288	exon4	c.G369T	p.V123V	CCTGGTGAAAGGT	.	112.0	34.0	63.0	0.0	.	280
ANKS1B	56899	hgsc.bcm.edu;bcgsc.ca	37	12	99129364	99129364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152788	exon26	c.A3721G	p.T1241A	CCTCAGTGTGTCT	.	67.0	4.0	64.0	0.0	.	.
ANLN	54443	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	36445866	36445866	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANLN	NM_018685	exon4	c.T564G	p.L188L	TCTGCTTTCAAAT	.	138.0	44.0	117.0	0.0	.	517
ARVCF	421	hgsc.bcm.edu;bcgsc.ca	37	22	19959474	19959474	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARVCF	NM_001670	exon18	c.C2716A	p.R906R	CCCTCCGGTCCAC	.	88.0	6.0	47.0	0.0	.	91
ATP2A3	489	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	3854948	3854948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP2A3	NM_174956	exon4	c.C251G	p.T84S	GTCGTGGTCTCCT	.	173.0	103.0	222.0	0.0	.	156
B4GALNT4	338707	hgsc.bcm.edu;bcgsc.ca	37	11	376081	376081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	B4GALNT4	NM_178537	exon12	c.T1103C	p.L368P	TGTACCTGTCCTT	.	62.0	4.0	55.0	0.0	.	91
BAI2	576	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207725	32207725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BAI2	NM_001703	exon8	c.C1346T	p.A449V	GGGCCCGCCACGC	.	139.0	60.0	88.0	0.0	.	526
C10orf40	283025	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61719043	61719043	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	TTTCTCCAGAGCT	.	146.0	56.0	176.0	0.0	.	.
C22orf28	51493	hgsc.bcm.edu;bcgsc.ca	37	22	32789991	32789991	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C22orf28	NM_014306	exon11	c.1180-2A>G	.	GTGAGCTGAGGAT	.	75.0	4.0	56.0	0.0	.	90
C2orf42	54980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70402864	70402864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf42	NM_017880	exon5	c.G980A	p.S327N	AGATTACTGCTCA	.	117.0	42.0	120.0	0.0	.	90
C2orf47	79568	hgsc.bcm.edu;bcgsc.ca	37	2	200824539	200824539	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf47	NM_024520	exon4	c.T585C	p.A195A	CCTTGCTGCTAAC	.	95.0	4.0	71.0	0.0	.	90
C7orf66	154907	hgsc.bcm.edu;bcgsc.ca	37	7	108524086	108524086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C7orf66	NM_001024607	exon2	c.T326C	p.F109S	TTTGGAAAAGATT	.	89.0	4.0	88.0	0.0	.	92
CACNA1A	773	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	13394203	13394203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA1A	NM_001127221	exon22	c.C3703T	p.R1235C	ACAGGCGGCGAAG	.	237.0	75.0	179.0	0.0	.	67
CASD1	64921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94166946	94166946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASD1	NM_022900	exon9	c.A1006G	p.N336D	CATCGTAATGCTC	.	230.0	45.0	104.0	0.0	.	70
CDC42BPG	55561	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64598997	64598997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC42BPG	NM_017525	exon28	c.C3284T	p.T1095M	CAGAGCGTGTGAG	.	241.0	29.0	180.0	0.0	.	528
CDH22	64405	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	44839091	44839091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH22	NM_021248	exon7	c.G1141A	p.V381M	CGCGCACGATCGC	.	128.0	58.0	89.0	0.0	.	95
CETP	1071	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57005938	57005938	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CETP	NM_000078	exon8	c.C693T	p.D231D	GGTGGACATTTCC	.	123.0	36.0	131.0	0.0	.	91
CHD3	1107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7809999	7809999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD3	NM_001005271	exon29	c.C4664A	p.S1555Y	TCATGTCTCTCGT	.	79.0	49.0	105.0	0.0	.	228
CNTN5	53942	hgsc.bcm.edu;bcgsc.ca	37	11	99715962	99715962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTN5	NM_001243270	exon5	c.T545C	p.I182T	GGAGTATTCTTAG	.	86.0	4.0	51.0	0.0	.	366
COL5A1	1289	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137726974	137726974	+	Missense_Mutation	SNP	G	G	A	rs150608071		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL5A1	NM_000093	exon65	c.G5294A	p.R1765H	CCCTCCGCTTCCT	.	129.0	52.0	122.0	0.0	G|1.000;A|0.000	524
COMMD3-BMI1	0	hgsc.bcm.edu;bcgsc.ca	37	10	22618212	22618212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001204062	exon14	c.A1151G	p.D384G	AGAGAGATGGACT	.	66.0	4.0	61.0	0.0	.	.
CRHR2	1395	ucsc.edu;bcgsc.ca	37	7	30705231	30705231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRHR2	NM_001202475	exon5	c.C421A	p.R141S	CGATGCGGTAGTG	.	598.0	92.0	401.0	1.0	.	524
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2820095	2820095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD1	NM_033225	exon61	c.A9521T	p.K3174M	TCGGACTTATAGG	.	71.0	42.0	91.0	0.0	.	86
CSMD2	114784	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34011768	34011768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD2	NM_052896	exon56	c.G8537A	p.R2846H	CCCAAACGGATGC	.	114.0	45.0	106.0	0.0	.	103
CWH43	80157	hgsc.bcm.edu;bcgsc.ca	37	4	49063874	49063874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CWH43	NM_025087	exon16	c.T2067A	p.H689Q	CCATCATTTTCAT	.	157.0	7.0	92.0	0.0	.	93
DDX43	55510	hgsc.bcm.edu;bcgsc.ca	37	6	74125911	74125911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX43	NM_018665	exon16	c.A1909G	p.M637V	AGAAAAATGGAAA	.	71.0	4.0	57.0	0.0	.	229
DIO2	1734	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80669460	80669460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIO2	.	.	.	.	GTCAAGTGGCTGA	.	116.0	44.0	99.0	0.0	.	22
DMXL1	1657	hgsc.bcm.edu;bcgsc.ca	37	5	118569090	118569090	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon38	c.A8331G	p.Q2777Q	TTCTCAACAAATA	.	122.0	6.0	115.0	0.0	.	92
DNAH10	196385	hgsc.bcm.edu;bcgsc.ca	37	12	124354958	124354958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon43	c.A7211G	p.N2404S	AACGGAATCAATG	.	65.0	4.0	78.0	0.0	.	95
DNAH10	196385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124323027	124323027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon28	c.C4573A	p.P1525T	AAAGACCCCGTGA	.	52.0	19.0	72.0	0.0	.	95
DNAH7	56171	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196912185	196912185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon5	c.C289T	p.P97S	GGTGGGGTAATTT	.	193.0	71.0	150.0	1.0	.	102
DNAJA1	3301	hgsc.bcm.edu;bcgsc.ca	37	9	33037024	33037024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJA1	NM_001539	exon8	c.A886G	p.K296E	ATTGTCAAGCATG	.	83.0	4.0	51.0	0.0	.	226
DSC3	1825	hgsc.bcm.edu;bcgsc.ca	37	18	28604328	28604328	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSC3	NM_024423	exon6	c.A762G	p.E254E	ACTACTTTCCAAA	.	54.0	5.0	40.0	0.0	.	94
DTL	51514	hgsc.bcm.edu;bcgsc.ca	37	1	212238257	212238257	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DTL	NM_016448	exon7	c.527-2A>G	.	TCTTTCAGATGGG	.	82.0	4.0	56.0	0.0	.	22
DYRK4	8798	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	4700393	4700393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYRK4	NM_003845	exon3	c.G47C	p.S16T	ACCCTAGCATTAA	.	199.0	66.0	170.0	0.0	.	360
ECT2L	345930	hgsc.bcm.edu;bcgsc.ca	37	6	139197610	139197610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ECT2L	NM_001195037	exon13	c.A1580G	p.E527G	TTCAGGAAAGAAA	.	72.0	4.0	64.0	0.0	.	22
EDARADD	128178	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236577581	236577581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EDARADD	NM_145861	exon3	c.G142A	p.D48N	ATTCAAGATACGG	.	164.0	55.0	75.0	0.0	.	90
EIF3A	8661	hgsc.bcm.edu;bcgsc.ca	37	10	120828985	120828985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF3A	NM_003750	exon6	c.A923G	p.K308R	AGATTCTTTCTCA	.	69.0	4.0	93.0	0.0	.	226
ENPEP	2028	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111409837	111409837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENPEP	NM_001977	exon2	c.C785T	p.A262V	CAGTGGCGGTAAG	.	32.0	18.0	57.0	0.0	.	157
ERI1	90459	hgsc.bcm.edu;bcgsc.ca	37	8	8875834	8875834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERI1	NM_153332	exon5	c.C610T	p.P204S	ACCTTCCCTCAGG	.	67.0	4.0	114.0	0.0	.	68
ESCO2	157570	hgsc.bcm.edu;bcgsc.ca	37	8	27634369	27634369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESCO2	NM_001017420	exon3	c.T544C	p.C182R	AATAATTGTCATT	.	54.0	4.0	50.0	0.0	.	90
EXOC2	55770	hgsc.bcm.edu;bcgsc.ca	37	6	556010	556010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC2	NM_018303	exon19	c.T1936C	p.F646L	GTTGGAAGACCTG	.	116.0	5.0	94.0	0.0	.	662
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4798978	4798978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXK1	NM_001037165	exon7	c.T1448C	p.V483A	TGGCCGTGCCTCC	.	30.0	4.0	68.0	0.0	.	516
GBP5	115362	hgsc.bcm.edu;bcgsc.ca	37	1	89729600	89729600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP5	NM_052942	exon9	c.G1181T	p.C394F	CGTTTACAAATGT	.	94.0	9.0	68.0	0.0	.	91
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89847413	89847413	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP6	NM_198460	exon7	c.C1032T	p.L344L	GAAGCTCCCCACA	.	221.0	9.0	173.0	0.0	.	92
GCSAM	257144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111842506	111842506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001190259	exon6	c.C339T	p.P113P	TTTGCAGGGAACA	.	272.0	90.0	217.0	0.0	.	.
GLI1	2735	hgsc.bcm.edu;bcgsc.ca	37	12	57857530	57857530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI1	NM_005269	exon2	c.T56C	p.L19P	GCTGTCTCCGGCC	.	53.0	4.0	48.0	0.0	.	722
GLI3	2737	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42012094	42012094	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon13	c.C1945A	p.R649R	GCGGCCGAGGATG	.	190.0	79.0	129.0	0.0	.	1149
GYS2	2998	hgsc.bcm.edu;bcgsc.ca	37	12	21692268	21692268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GYS2	NM_021957	exon15	c.A1814G	p.Y605C	TGCTGGTAATACT	.	89.0	4.0	101.0	0.0	.	523
HEATR1	55127	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	236750749	236750749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEATR1	NM_018072	exon14	c.T1668A	p.N556K	CAGAAGATTTGAA	.	266.0	135.0	185.0	0.0	.	93
HEYL	26508	hgsc.bcm.edu;bcgsc.ca	37	1	40105230	40105230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEYL	NM_014571	exon1	c.A68G	p.E23G	TGGCCCTCTTGGC	.	80.0	4.0	87.0	0.0	.	91
HMMR	3161	hgsc.bcm.edu;bcgsc.ca	37	5	162891750	162891750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMMR	NM_012485	exon3	c.T167C	p.V56A	TTAATGTTGACAA	.	73.0	4.0	65.0	0.0	.	90
HRG	3273	hgsc.bcm.edu;bcgsc.ca	37	3	186390578	186390578	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HRG	NM_000412	exon5	c.A561G	p.R187R	CTAGAGAGGAGGG	.	95.0	5.0	84.0	0.0	.	91
IFI44	10561	hgsc.bcm.edu;bcgsc.ca	37	1	79115893	79115893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFI44	NM_006417	exon2	c.A13G	p.T5A	GTGACAACTCGTT	.	141.0	6.0	117.0	0.0	.	91
IFNA2	3440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	21385289	21385289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFNA2	NM_000605	exon1	c.C40T	p.L14F	AGCTGAGCACCAG	.	118.0	67.0	133.0	0.0	.	153
IGDCC4	57722	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	65676554	65676554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGDCC4	NM_020962	exon20	c.G3546T	p.R1182S	CAACTCCCTGTCC	.	184.0	62.0	143.0	0.0	.	93
IGSF10	285313	hgsc.bcm.edu;bcgsc.ca	37	3	151176327	151176327	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF10	NM_178822	exon1	c.C171A	p.P57P	CACATTGGGCGGG	.	244.0	17.0	192.0	0.0	.	102
INSR	3643	hgsc.bcm.edu;bcgsc.ca	37	19	7152932	7152932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INSR	NM_000208	exon10	c.A2036G	p.K679R	GGCAGCTTCAGCC	.	69.0	4.0	58.0	0.0	.	1381
INTU	27152	hgsc.bcm.edu;bcgsc.ca	37	4	128635178	128635178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTU	NM_015693	exon15	c.T2647C	p.F883L	GTGTTGTTTGAAT	.	65.0	4.0	82.0	0.0	.	91
ITGB5	3693	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	124578237	124578237	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGB5	NM_002213	exon3	c.C213T	p.V71V	ATTTTTGACAAGG	.	226.0	82.0	165.0	0.0	.	227
ITPKB	3707	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226923526	226923526	+	Missense_Mutation	SNP	G	G	A	rs149543375		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITPKB	NM_002221	exon2	c.C1634T	p.P545L	AGCTCCGGACTTG	.	132.0	46.0	72.0	0.0	G|1.000;A|0.000	230
KANSL1	284058	hgsc.bcm.edu;bcgsc.ca	37	17	44109416	44109416	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001193466	exon14	c.A3087G	p.E1029E	TACCTGTTCATCC	.	79.0	4.0	82.0	0.0	.	.
KIAA0196	9897	hgsc.bcm.edu;bcgsc.ca	37	8	126052109	126052109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA0196	NM_014846	exon24	c.T2882C	p.I961T	TTGGCAATCTGTT	.	82.0	4.0	63.0	0.0	.	92
KIF19	124602	hgsc.bcm.edu;bcgsc.ca	37	17	72350520	72350520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF19	NM_153209	exon18	c.A2528G	p.E843G	CCAGTGAGGACAA	.	61.0	4.0	94.0	0.0	.	90
KIR2DL3	3804	hgsc.bcm.edu;bcgsc.ca	37	19	55263169	55263169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIR2DL3	NM_015868	exon6	c.T784C	p.F262L	CTCCTCTTCTTTC	.	116.0	5.0	48.0	0.0	.	92
LATS1	9113	hgsc.bcm.edu;bcgsc.ca	37	6	149997708	149997708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LATS1	NM_004690	exon6	c.A2759G	p.E920G	AACACTTCAGGTG	.	81.0	4.0	63.0	0.0	.	992
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136594658	136594658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCT	NM_002299	exon1	c.T82C	p.F28L	AAATGAAATTTCT	.	95.0	42.0	68.0	0.0	.	101
LEPR	3953	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66067119	66067119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LEPR	NM_001003680	exon9	c.A1039C	p.N347H	GGGTCTAATGTTT	.	81.0	29.0	66.0	0.0	.	91
LIG1	3978	hgsc.bcm.edu;bcgsc.ca	37	19	48665558	48665558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIG1	NM_000234	exon3	c.A68G	p.E23G	GATGCCTCCTTCT	.	101.0	5.0	90.0	0.0	.	722
LPAR5	57121	hgsc.bcm.edu;bcgsc.ca	37	12	6729711	6729711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPAR5	NM_001142961	exon2	c.T704C	p.L235P	AGCAGGAGGCGCA	.	30.0	4.0	42.0	0.0	.	70
LRRN3	54674	hgsc.bcm.edu;bcgsc.ca	37	7	110764583	110764583	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRN3	NM_018334	exon2	c.A1755G	p.P585P	GAATCCATCAACT	.	65.0	4.0	73.0	0.0	.	154
MACC1	346389	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20198917	20198917	+	Missense_Mutation	SNP	G	G	A	rs143555326	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACC1	NM_182762	exon5	c.C1067T	p.P356L	GGTGACGGAAGAG	.	164.0	52.0	167.0	0.0	A|0.001;G|0.999;T|0.000	93
MAML3	55534	hgsc.bcm.edu;bcgsc.ca	37	4	140811105	140811105	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAML3	NM_018717	exon2	c.G1485A	p.Q495Q	CTGCTGCTGCTGC	.	71.0	19.0	90.0	0.0	.	455
MAP3K5	4217	hgsc.bcm.edu;bcgsc.ca	37	6	136935403	136935403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP3K5	NM_005923	exon16	c.A2172G	p.E724E	TATTTCTTCATGC	.	76.0	4.0	57.0	0.0	.	982
MBD1	4152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	47801526	47801526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD1	NM_001204137	exon10	c.A957G	p.P319P	CTGTGATGGGGGT	.	96.0	35.0	85.0	0.0	.	228
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47685325	47685325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCM3AP	NM_003906	exon12	c.A3144G	p.A1048A	GGTCAGTGCCAGG	.	66.0	4.0	78.0	0.0	.	291
MFSD9	84804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	103334977	103334978	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MFSD9	NM_032718	exon6	c.1327_1328insC	p.S443fs	CCAGGCTGGGGGG	.	133.0	23.0	106.0	0.0	.	155
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13168371	13168371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MPDZ	NM_003829	exon22	c.A3248G	p.D1083G	TTTATGTCAGGGC	.	84.0	5.0	95.0	0.0	.	231
MROH6	642475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144654667	144654667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001100878	exon1	c.C218T	p.A73V	ACGGTGGCCCCAC	.	93.0	16.0	62.0	0.0	.	.
MTMR3	8897	hgsc.bcm.edu;bcgsc.ca	37	22	30387534	30387534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTMR3	NM_153050	exon7	c.A335G	p.K112R	GGCTGAAGAGACT	.	80.0	5.0	68.0	0.0	.	292
MUC16	94025	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9089471	9089471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon1	c.C2344G	p.P782A	TTTCAGGACTTGT	.	159.0	66.0	111.0	0.0	.	566
N4BP2	55728	hgsc.bcm.edu;bcgsc.ca	37	4	40121838	40121838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	N4BP2	NM_018177	exon9	c.A2107G	p.I703V	GAGCAAATAGAAA	.	50.0	4.0	48.0	0.0	.	602
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	112479858	112479858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAA25	NM_024953	exon20	c.C2425G	p.L809V	GGTCTAGTAAAGA	.	25.0	6.0	17.0	0.0	.	155
NAALADL2	254827	hgsc.bcm.edu;bcgsc.ca	37	3	175181236	175181236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALADL2	NM_207015	exon7	c.A1282G	p.T428A	TTGAAAACAGTTA	.	61.0	4.0	46.0	0.0	.	47
NAF1	92345	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164085383	164085383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAF1	NM_138386	exon2	c.G526C	p.E176Q	GTAATTCATCTTT	.	117.0	11.0	128.0	0.0	.	70
NBPF3	84224	hgsc.bcm.edu;mdanderson.org	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NBPF3	NM_032264	exon11	c.T1238G	p.F413C	AGAAAGAGCCTGA	.	121.0	37.0	17.0	0.0	.	92
NEK3	4752	hgsc.bcm.edu;bcgsc.ca	37	13	52707932	52707932	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK3	NM_002498	exon15	c.A1329G	p.K443K	GGGGCCTTTCAAG	.	60.0	4.0	84.0	0.0	.	359
NLRP14	338323	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7092523	7092523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP14	NM_176822	exon12	c.G3266T	p.W1089L	TGTCTTGGTGGTG	.	74.0	22.0	52.0	0.0	.	295
NLRP2	55655	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	55508725	55508725	+	Missense_Mutation	SNP	C	C	A	rs61735074	byfrequency;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP2	NM_017852	exon12	c.C2920A	p.L974I	GAAGACCTCTGCT	.	321.0	157.0	232.0	0.0	C|0.982;G|0.018	120
NR1H2	7376	hgsc.bcm.edu;bcgsc.ca	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	165.0	36.0	83.0	0.0	G|0.903;A|0.097	186
OR10J5	127385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	159505581	159505581	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR10J5	NM_001004469	exon1	c.T217A	p.Y73N	GTGTGTACACCGT	.	206.0	41.0	116.0	0.0	.	71
OR11G2	390439	hgsc.bcm.edu;bcgsc.ca	37	14	20666182	20666182	+	Missense_Mutation	SNP	G	G	A	rs77471263		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR11G2	NM_001005503	exon1	c.G688A	p.G230S	AAAAAAGGCCCTG	.	189.0	22.0	164.0	0.0	.	70
OR6A2	8590	hgsc.bcm.edu;bcgsc.ca	37	11	6816516	6816516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6A2	NM_003696	exon1	c.A424G	p.S142G	GGCCACTGACAAT	.	81.0	4.0	66.0	0.0	.	94
OR6C70	390327	hgsc.bcm.edu;bcgsc.ca	37	12	55863303	55863303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6C70	NM_001005499	exon1	c.T620C	p.V207A	AATGTGACAATAA	.	102.0	6.0	66.0	0.0	.	69
OSBPL3	26031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24911688	24911688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL3	NM_145321	exon3	c.G97A	p.D33N	AGCTGTCCTGTTC	.	114.0	46.0	90.0	0.0	.	204
PAN3	255967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28854573	28854573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAN3	NM_175854	exon16	c.G2214C	p.R738S	AAACAGGATGCGA	.	75.0	49.0	75.0	0.0	.	69
PAX9	5083	hgsc.bcm.edu;bcgsc.ca	37	14	37132384	37132384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAX9	NM_006194	exon3	c.G287A	p.G96D	ACCCCGGCATCTT	.	186.0	11.0	112.0	0.0	.	228
PCDH7	5099	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30921790	30921790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH7	NM_032457	exon2	c.A3190G	p.T1064A	AGAGTGACGTTTT	.	188.0	67.0	168.0	1.0	.	229
PCDH8	5100	hgsc.bcm.edu;bcgsc.ca	37	13	53418699	53418699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH8	NM_002590	exon3	c.T3209C	p.V1070A	GATTACACATTTT	.	96.0	4.0	123.0	0.0	.	153
PDLIM7	9260	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176910650	176910650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDLIM7	NM_005451	exon13	c.G1369C	p.V457L	CTCACACATGAGA	.	277.0	104.0	206.0	0.0	.	153
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28494372	28494372	+	Missense_Mutation	SNP	C	C	A	rs192902098		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDX1	NM_000209	exon1	c.C97A	p.P33T	AGCCCCCCTGCGT	.	11.0	5.0	31.0	0.0	C|0.997;A|0.003	514
PHB	5245	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	47489105	47489105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHB	NM_002634	exon3	c.A185G	p.Q62R	GGTTTCTGTACCC	.	91.0	26.0	84.0	0.0	.	90
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67575562	67575565	+	Splice_Site	DEL	GTTT	GTTT	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GTTT	GTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3R1	.	.	.	.	CTCCAGGTTTGTT	.	163.0	34.0	129.0	0.0	.	4332
PITPNM1	9600	hgsc.bcm.edu;bcgsc.ca	37	11	67261213	67261213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PITPNM1	NM_004910	exon21	c.T3104C	p.V1035A	ATGGAGACGCTGG	.	195.0	10.0	114.0	0.0	.	227
PLCL1	5334	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950766	198950766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCL1	NM_006226	exon2	c.T2525A	p.F842Y	CCCTTTTTGTCCA	.	205.0	78.0	164.0	0.0	.	228
PLK2	10769	hgsc.bcm.edu;bcgsc.ca	37	5	57753128	57753128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLK2	NM_006622	exon7	c.G888A	p.R296R	TGTATACCTTGCT	.	57.0	4.0	32.0	0.0	.	409
PNLDC1	154197	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	160241522	160241522	+	Silent	SNP	G	G	A	rs144377714	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNLDC1	NM_173516	exon19	c.G1536A	p.A512A	TCTCGCGTTCATC	.	126.0	37.0	171.0	0.0	G|1.000;A|0.000	90
PPP2R3A	5523	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135721003	135721003	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP2R3A	NM_002718	exon2	c.T663C	p.D221D	AATAGATAATTTT	.	34.0	14.0	34.0	0.0	.	662
PRDM1	639	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106536122	106536122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon2	c.C89T	p.A30V	GATTGGCAGAGGG	.	172.0	58.0	130.0	0.0	.	862
PRDM1	639	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106553019	106553019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon5	c.C984T	p.P328P	CTCCCCCATTCCA	.	44.0	18.0	26.0	0.0	.	862
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148559833	148559833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRMT10	NM_138364	exon12	c.A2388G	p.E796E	AATCTCTTCATCA	.	86.0	4.0	115.0	0.0	.	91
PRPF6	24148	hgsc.bcm.edu;bcgsc.ca	37	20	62614445	62614445	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRPF6	NM_012469	exon2	c.T117C	p.D39D	CCGTGATGCAAAT	.	117.0	5.0	89.0	0.0	.	70
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54128608	54128608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSME4	NM_014614	exon28	c.C3164G	p.A1055G	ACAATCGCTGGCC	.	106.0	43.0	93.0	0.0	.	275
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89717725	89717725	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon7	c.T750A	p.C250X	TGTGTGTGGTGAT	.	74.0	49.0	124.0	0.0	.	17735
PTPN13	5783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	87556466	87556466	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPN13	NM_006264	exon2	c.A57G	p.E19E	GGAGGAAGAAATA	.	87.0	38.0	97.0	0.0	.	230
PTPRC	5788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	198678836	198678836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRC	NM_002838	exon11	c.A1054G	p.K352E	GATAATAAAGAAA	.	189.0	130.0	86.0	0.0	.	295
PVRL2	5819	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	45375206	45375206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PVRL2	NM_002856	exon3	c.C575T	p.A192V	CACCTGCCCGGAT	.	114.0	16.0	102.0	0.0	.	90
RANGAP1	5905	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41645369	41645369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RANGAP1	NM_002883	exon15	c.G1659T	p.K553N	AAGGGCCTTGGGG	.	101.0	17.0	91.0	0.0	.	90
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	114424452	114424452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001145346	exon1	c.C448T	p.R150C	AGGAAGCGCGGGC	.	10.0	8.0	14.0	0.0	.	.
RCOR2	283248	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	63681765	63681765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCOR2	NM_173587	exon7	c.G643A	p.G215R	GCTCTCCCTCACT	.	226.0	65.0	121.0	0.0	.	92
RFC4	5984	hgsc.bcm.edu;ucsc.edu	37	3	186507957	186507957	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RFC4	NM_181573	exon10	c.A970T	p.K324X	TAGACTTCTGTTT	.	162.0	61.0	148.0	0.0	.	291
RHO	6010	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129251109	129251109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RHO	NM_000539	exon3	c.C546T	p.G182G	CGAGGGCCTGCAG	.	203.0	92.0	172.0	0.0	.	90
RNF8	9025	hgsc.bcm.edu;bcgsc.ca	37	6	37344709	37344709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF8	NM_003958	exon6	c.A1136G	p.K379R	AAGAGAAGGAGAA	.	90.0	5.0	63.0	0.0	.	227
RPAP1	26015	hgsc.bcm.edu;bcgsc.ca	37	15	41826958	41826958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPAP1	NM_015540	exon6	c.T717C	p.A239A	CTCAGGAGCCATG	.	122.0	5.0	98.0	0.0	.	153
RPS6KB2	6199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67200629	67200629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPS6KB2	NM_003952	exon9	c.A740G	p.N247S	GCCACAACCGGGC	.	89.0	24.0	60.0	0.0	.	1000
SCN1A	6323	hgsc.bcm.edu;bcgsc.ca	37	2	166866301	166866301	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN1A	NM_001165963	exon20	c.A3930G	p.G1310G	GATGGCTCCAAGT	.	98.0	4.0	61.0	0.0	.	147
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115824677	115824677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA6A	NM_020796	exon8	c.A562G	p.T188A	AGTCAGTCACTGT	.	111.0	5.0	89.0	0.0	.	92
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47168143	47168143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETD2	NM_014159	exon2	c.A82G	p.N28D	CCTCATTTTCTTC	.	36.0	4.0	33.0	0.0	.	1273
SH3TC1	54436	hgsc.bcm.edu;bcgsc.ca	37	4	8230236	8230236	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3TC1	NM_018986	exon12	c.G2815C	p.G939R	CCCCTTGGGGAGT	.	141.0	6.0	164.0	0.0	.	154
SLC6A7	6534	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	149583547	149583547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC6A7	NM_014228	exon10	c.C1278A	p.F426L	GGTGTTCTCAGGG	.	236.0	71.0	205.0	0.0	.	90
SPICE1	152185	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113188037	113188037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPICE1	NM_144718	exon8	c.G660T	p.L220F	AGTCCACAACTTA	.	159.0	54.0	142.0	0.0	.	70
SPINK6	404203	hgsc.bcm.edu;bcgsc.ca	37	5	147593498	147593498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK6	NM_205841	exon3	c.C107A	p.P36H	AGGACCCCAAGGT	.	153.0	7.0	145.0	0.0	.	91
SPTAN1	6709	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131374459	131374459	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPTAN1	NM_001130438	exon39	c.G4977C	p.L1659L	GAAACTGAAAGAA	.	198.0	84.0	123.0	0.0	.	158
STXBP5	134957	hgsc.bcm.edu;bcgsc.ca	37	6	147631274	147631274	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STXBP5	NM_139244	exon10	c.A972G	p.R324R	AAGAAGACCTTGC	.	70.0	4.0	81.0	0.0	.	90
SUSD4	55061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223402546	223402546	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUSD4	NM_017982	exon6	c.C909A	p.I303I	TGATTTGATGCAG	.	234.0	67.0	149.0	0.0	.	68
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64494280	64494280	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYNE2	NM_182914	exon43	c.A6483T	p.L2161L	AGAACTAAAGAAG	.	145.0	6.0	125.0	0.0	.	164
TLL2	7093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98170214	98170214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TLL2	NM_012465	exon9	c.C1066A	p.Q356K	TGTCCTGCAGGGT	.	59.0	40.0	102.0	0.0	.	93
TMEM135	65084	hgsc.bcm.edu;bcgsc.ca	37	11	87020678	87020678	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM135	NM_022918	exon10	c.T900C	p.L300L	CCAGCTTGGAGCT	.	105.0	5.0	55.0	0.0	.	514
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138857961	138857961	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM173	NM_198282	exon6	c.653delA	p.N218fs	CGAATGTTGGGGT	.	153.0	43.0	170.0	0.0	.	69
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577557	7577557	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon7	c.T724A	p.C242S	CCATGCAGGAACT	.	129.0	76.0	224.0	0.0	.	70225
TPP2	7174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103268804	103268804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPP2	NM_003291	exon4	c.G449T	p.C150F	AAGCCTGTAGAAA	.	73.0	37.0	58.0	0.0	.	92
TYR	7299	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	89028385	89028385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TYR	NM_000372	exon5	c.G1441C	p.A481P	CTTGGGGCGGCGA	.	384.0	25.0	238.0	0.0	.	92
UGT1A5	54579	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234622002	234622002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UGT1A5	NM_019078	exon1	c.T365C	p.L122S	TGTCTTTGATCAT	.	232.0	89.0	179.0	0.0	.	3
VASN	114990	hgsc.bcm.edu;bcgsc.ca	37	16	4432163	4432163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VASN	NM_138440	exon2	c.G1285A	p.A429T	CACCTGGCGTGCT	.	80.0	4.0	124.0	0.0	.	68
VSIG10L	147645	hgsc.bcm.edu;bcgsc.ca	37	19	51835894	51835894	+	Missense_Mutation	SNP	C	C	G	rs200336358		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001163922	exon10	c.G2575C	p.A859P	TCTGTGCCTGGAA	.	129.0	11.0	122.0	0.0	.	.
WNT5B	81029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1741875	1741875	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WNT5B	NM_032642	exon3	c.C132G	p.A44A	CGGTGCCCAGCCC	.	149.0	61.0	129.0	0.0	.	562
XK	7504	hgsc.bcm.edu;bcgsc.ca	37	X	37553772	37553772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XK	NM_021083	exon2	c.T479C	p.V160A	TAAGTGTCATGCA	.	116.0	5.0	100.0	0.0	.	130
ZFHX3	463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72829897	72829897	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFHX3	NM_006885	exon9	c.C6684G	p.P2228P	CGAAGGGGGCCGG	.	173.0	68.0	143.0	0.0	.	72
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	22842944	22842944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280B	NM_080764	exon4	c.A780T	p.A260A	TGTTTTTGCCAAT	.	100.0	17.0	81.0	0.0	.	70
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178311121	178311121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354B	NM_058230	exon5	c.1668delA	p.G556fs	ATGTGGAAAAACT	.	129.0	31.0	110.0	0.0	.	92
ZNF675	171392	hgsc.bcm.edu;bcgsc.ca	37	19	23837367	23837367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF675	NM_138330	exon4	c.A368G	p.K123R	TGCAACTTACATT	.	123.0	5.0	102.0	0.0	.	228
CREB3L1	90993	hgsc.bcm.edu;bcgsc.ca	37	11	46342258	46342259	+	Splice_Site	DNP	CA	CA	AG	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	TCTCTCCAGGATC	.	115.0	11.0	116.0	0.0	.	.
BRD1	23774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50187702	50187703	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.G780L	TCCGGCCCCAGCG	.	58.0	43.0	67.0	0.0	.	.