Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	67210857	67210857	+	Nonsense_Mutation	SNP	G	G	A	rs200246933	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ABCA10	NM_080282	exon10	c.C994T	p.R332X	AAACTCGCTCAAA	.	95.0	24.0	127.0	0.0	G|0.999;C|0.000	93
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128958013	128958013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ADAMTS19	NM_133638	exon10	c.C1724G	p.P575R	TTGGGCCATTGGC	.	241.0	55.0	247.0	0.0	.	295
AIF1	199	ucsc.edu;bcgsc.ca	37	6	31583458	31583458	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	AIF1	NM_001623	exon3	c.C99T	p.D33D	CCTAGACGATCCC	.	41.0	4.0	43.0	0.0	.	515
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220095010	220095010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ANKZF1	NM_001042410	exon2	c.C31G	p.P11A	CCGGCTCCTGCGT	.	140.0	38.0	218.0	0.0	.	92
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145773562	145773562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARHGAP39	NM_025251	exon6	c.C908T	p.S303F	CGCGGGGAGGAGG	.	62.0	11.0	66.0	0.0	.	90
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27105581	27105582	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARID1A	NM_006015	exon20	c.5192_5193insA	p.L1731fs	GCATTTTAAAGGA	.	97.0	53.0	222.0	0.0	.	584
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42273177	42273177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ATXN7L3	NM_020218	exon7	c.T564A	p.D188E	AAAAGGATCCGAA	.	39.0	13.0	68.0	0.0	.	68
B3GALTL	145173	ucsc.edu;bcgsc.ca	37	13	31789232	31789232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	B3GALTL	NM_194318	exon2	c.T115C	p.S39P	AAGCAGTCTCAGG	.	46.0	4.0	76.0	0.0	.	92
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69703824	69703824	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	BAI3,brain,glioma,+1	BAI3	NM_001704	exon11	c.A1899G	p.A633A	AAGGGCAAGTTAC	.	94.0	28.0	92.0	0.0	.	1148
BCCIP	56647	broad.mit.edu;bcgsc.ca	37	10	127541724	127541724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BCCIP	NM_016567	exon8	c.T881C	p.V294A	CCCTGGTTTCTCT	.	72.0	7.0	74.0	0.0	.	154
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	133185754	133185754	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BFSP2	NM_003571	exon5	c.C974A	p.S325X	ACACTTCGTGCCA	.	196.0	20.0	241.0	0.0	.	90
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61870579	61870579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BIRC7	NM_139317	exon5	c.G643A	p.E215K	GCCCAGGAGCCAG	.	48.0	22.0	47.0	0.0	.	659
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41203109	41203109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BRCA1	NM_007300	exon21	c.G5366A	p.C1789Y	CCATAGCAACAGA	.	59.0	20.0	101.0	0.0	.	3415
C16orf96	342346	ucsc.edu;bcgsc.ca	37	16	4625287	4625287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001145011	exon5	c.A806G	p.E269G	TCTCCGAGCCCGT	.	55.0	5.0	52.0	0.0	.	.
C1orf43	25912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154184832	154184832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	C1orf43	NM_001098616	exon6	c.T530C	p.L177P	TAGCGTAGGTACT	.	110.0	69.0	106.0	0.0	.	90
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	19838935	19838944	+	Frame_Shift_Del	DEL	CCCCTTTTGG	CCCCTTTTGG	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	CCCCTTTTGG	CCCCTTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDH18	NM_001167667	exon3	c.152_161del	p.51_54del	ACCCATCCCCTTT	.	121.0	38.0	144.0	0.0	.	159
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176011757	176011757	+	Silent	SNP	C	C	T	rs180931810		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDHR2	NM_017675	exon19	c.C2475T	p.H825H	ACAGCACGGCCAG	.	175.0	40.0	135.0	0.0	C|0.999;T|0.001	70
CNTNAP5	129684	broad.mit.edu;bcgsc.ca	37	2	125521613	125521613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CNTNAP5	NM_130773	exon16	c.T2419A	p.F807I	CCTACCTTCCATG	.	177.0	10.0	253.0	0.0	.	524
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22606855	22606855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	COMMD3	NM_012071	exon2	c.A182G	p.H61R	TAAAACATTGTCA	.	193.0	69.0	296.0	0.0	.	115
CRYGS	1427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186256648	186256648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CRYGS	NM_017541	exon3	c.G374T	p.R125L	ATCTCTCGCATGT	.	127.0	53.0	165.0	0.0	.	90
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2954519	2954519	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CSMD1	NM_033225	exon47	c.A6990G	p.G2330G	AATGACTCCCGAT	.	40.0	4.0	101.0	0.0	.	86
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	245.0	78.0	339.0	0.0	.	24361
CWF19L2	143884	ucsc.edu;bcgsc.ca	37	11	107309856	107309856	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CWF19L2	NM_152434	exon6	c.T624C	p.G208G	TGGAAGACCTGTC	.	37.0	4.0	68.0	0.0	.	68
DGKQ	1609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	967112	967112	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DGKQ	NM_001347	exon1	c.G159T	p.P53P	GGGGCCCGGGGCT	.	30.0	12.0	55.0	1.0	.	537
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	55340777	55340777	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DHCR24	NM_014762	exon4	c.C601T	p.R201X	TGCATCGCACAAA	.	80.0	33.0	107.0	0.0	.	91
DHX33	56919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5365670	5365670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DHX33	NM_020162	exon3	c.G647T	p.R216M	TTTCTCCTCTTCT	.	185.0	57.0	202.0	0.0	.	228
DIS3L	115752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66604085	66604085	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DIS3L	NM_001143688	exon5	c.T582A	p.P194P	CTGGCCTGATTTA	.	30.0	12.0	63.0	0.0	.	92
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225510419	225510419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DNAH14	NM_001373	exon60	c.T9110C	p.I3037T	TGTGTATTCTTCT	.	247.0	50.0	222.0	0.0	.	23
DUOXA1	90527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45413291	45413291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DUOXA1	NM_144565	exon6	c.C334G	p.L112V	CTGTGAGTGTGAT	.	110.0	37.0	115.0	0.0	.	227
ELMOD3	84173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	85617517	85617517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ELMOD3	NM_032213	exon11	c.A1072C	p.T358P	CAGCTTACCAAAA	.	230.0	16.0	283.0	1.0	.	92
EPX	8288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56276412	56276412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	EPX	NM_000502	exon8	c.T1132C	p.S378P	ACCCGATCAACGG	.	33.0	5.0	26.0	0.0	.	92
FAM186A	121006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50749671	50749671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FAM186A	NM_001145475	exon4	c.T944C	p.M315T	TGAAGCATTTCAT	.	96.0	40.0	133.0	1.0	.	68
FBXL16	146330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	745857	745857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FBXL16	NM_153350	exon3	c.G700T	p.A234S	GCCCGGCCTCGGT	.	111.0	47.0	195.0	0.0	.	226
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1808893	1808893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FGFR3	NM_001163213	exon18	c.G2331A	p.Q777Q	TGGCCAGGACACC	.	133.0	43.0	204.0	0.0	.	9542
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171174626	171174626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FMO2	NM_001460	exon7	c.G1036C	p.E346Q	AAAGTAGAGAATA	.	119.0	25.0	95.0	0.0	.	91
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159782775	159782775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FNIP2	NM_020840	exon12	c.C1312G	p.L438V	GCCTTACTGACTG	.	170.0	49.0	222.0	0.0	.	68
FOCAD	54914	broad.mit.edu;ucsc.edu	37	9	20926358	20926358	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_017794	exon28	c.T3020A	p.L1007X	CACTCTTGGTCAT	.	77.0	24.0	124.0	1.0	.	.
GLDC	2731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6592200	6592200	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GLDC	NM_000170	exon11	c.A1425G	p.T475T	ATTGACTGTTTCA	.	46.0	21.0	69.0	0.0	.	92
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19745726	19745726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GMIP	NM_016573	exon17	c.G1762A	p.V588I	CGCTGACCCGGTA	.	83.0	25.0	69.0	0.0	.	91
HAVCR1	26762	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	156479625	156479625	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HAVCR1	NM_001099414	exon4	c.C420T	p.T140T	CGTGACGGTTGGA	.	296.0	21.0	308.0	0.0	.	92
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	43484273	43484273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HECW1	NM_015052	exon11	c.A1502G	p.E501G	GGGAAGAAGAGGA	.	96.0	8.0	93.0	0.0	.	669
HJURP	55355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234749510	234749510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HJURP	NM_018410	exon8	c.T1916G	p.L639W	GATGGCAACTTCT	.	30.0	8.0	47.0	0.0	.	69
HOXC9	3225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54394044	54394044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HOXC9	NM_006897	exon1	c.A72G	p.L24L	CCTCCTAGCGTCC	.	110.0	27.0	133.0	0.0	.	155
HTR3E	285242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183822009	183822009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HTR3E	NM_182589	exon3	c.T364A	p.C122S	GAGGAATGTGAGG	.	49.0	11.0	66.0	0.0	.	92
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	99020519	99020519	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IKBIP	NM_153687	exon3	c.323delA	p.Q108fs	GCTTCCTGCAGGA	.	91.0	22.0	99.0	0.0	.	226
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37524843	37524843	+	Missense_Mutation	SNP	C	C	T	rs143857582	byfrequency	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IL2RB	NM_000878	exon10	c.G949A	p.G317S	CCAGGCCGCCAGG	.	60.0	16.0	85.0	0.0	C|0.999;T|0.001	90
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202704644	202704644	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KDM5B	NM_006618	exon22	c.G3336A	p.L1112L	ATTTGGCAAGGGC	.	399.0	72.0	320.0	1.0	.	273
KIAA1257	57501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128712024	128712024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_020741	exon2	c.A124G	p.R42G	GGGCCCTGGCCTT	.	131.0	45.0	203.0	0.0	.	.
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80196750	80196750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LCA5	NM_001122769	exon8	c.G2065T	p.D689Y	TTTCATCTTCTAC	.	100.0	39.0	128.0	0.0	.	90
LRP1	4035	broad.mit.edu;bcgsc.ca	37	12	57604994	57604994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LRP1	NM_002332	exon84	c.T12952C	p.C4318R	GGCACATGCCAGA	.	121.0	6.0	166.0	0.0	.	596
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39535117	39535117	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAP4K3	NM_003618	exon15	c.A1086G	p.S362S	TTCTTCTGAACTG	.	52.0	11.0	73.0	0.0	.	550
MAST3	23031	broad.mit.edu;bcgsc.ca	37	19	18241483	18241483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAST3	NM_015016	exon13	c.A1316G	p.H439R	GGCGCCACCTATG	.	133.0	6.0	150.0	0.0	.	502
MOCOS	55034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	33831219	33831219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MOCOS	NM_017947	exon11	c.A2137G	p.R713G	TCTCAAAGGAATG	.	48.0	5.0	54.0	0.0	.	91
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132649562	132649562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MOXD1	NM_015529	exon5	c.G835T	p.G279C	CTCCACCAATAGC	.	102.0	5.0	119.0	0.0	.	515
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60767531	60767531	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MRC2	NM_006039	exon26	c.C3757A	p.R1253R	CCTCCCCGAAGAA	.	252.0	74.0	366.0	1.0	.	117
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16794852	16794852	+	Missense_Mutation	SNP	G	G	A	rs192053260	by1000genomes	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYO10	NM_012334	exon4	c.C370T	p.R124C	GGTGGCGCCGGCT	.	118.0	55.0	101.0	0.0	G|0.999;A|0.000	3
NEK4	6787	ucsc.edu;bcgsc.ca	37	3	52775493	52775493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NEK4	NM_003157	exon13	c.T2027C	p.L676P	TCAGACAGACAAT	.	37.0	4.0	86.0	0.0	.	358
NEU3	10825	broad.mit.edu;bcgsc.ca	37	11	74716844	74716844	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NEU3	NM_006656	exon3	c.T693C	p.P231P	CAGGCCTCATTCT	.	169.0	7.0	214.0	0.0	.	24
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NFE2L2	NM_006164	exon2	c.A246C	p.E82D	GAGAAATTCACCT	.	127.0	52.0	180.0	0.0	.	90
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31685081	31685081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NOL4	NM_003787	exon3	c.G458A	p.R153Q	AGAAATCGTGTCA	.	147.0	56.0	180.0	0.0	.	93
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869815	4869815	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	OR51S1	NM_001004758	exon1	c.T624C	p.F208F	AACCACAAATAGG	.	46.0	16.0	90.0	0.0	.	72
OSTCP1	202459	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159262851	159262851	+	RNA	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	GAAGAAATCTATT	.	87.0	31.0	122.0	0.0	.	.
PARN	5073	broad.mit.edu;bcgsc.ca	37	16	14704624	14704624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PARN	NM_002582	exon7	c.A431G	p.E144G	TACTGCTCTCTTA	.	114.0	7.0	158.0	0.0	.	24
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223084872	223084872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PAX3	NM_181457	exon7	c.G1160A	p.G387D	GAGAGGCCATTGC	.	118.0	42.0	180.0	0.0	.	1821
PCDHA6	56142	broad.mit.edu;bcgsc.ca	37	5	140209065	140209065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCDHA6	NM_018909	exon1	c.C1389T	p.F463F	AGTGTTCGTGAAG	.	381.0	36.0	415.0	1.0	.	92
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	95733104	95733104	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCSK1	NM_000439	exon12	c.1658delT	p.F553fs	GACATGAAGTCCC	.	151.0	39.0	158.0	0.0	.	92
PDF	64146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	69363005	69363005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_022341	exon2	c.C652A	p.H218N	GCAGGTGGTCCAT	.	67.0	23.0	83.0	0.0	.	.
PMVK	10654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154904854	154904854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PMVK	NM_006556	exon2	c.G133A	p.G45S	GTGGACCAGAGAG	.	235.0	59.0	180.0	0.0	.	115
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203037705	203037705	+	Silent	SNP	C	C	T	rs200137584		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PPFIA4	NM_015053	exon14	c.C1755T	p.F585F	GAACTTCGACCAC	.	104.0	59.0	94.0	0.0	C|0.998;T|0.002	230
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	16014922	16014922	+	Missense_Mutation	SNP	G	G	T	rs137853006	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PROM1	NM_006017	exon10	c.C1117A	p.R373S	TTTGGCGTTGTAC	.	66.0	20.0	90.0	0.0	.	207
PTTG2	10744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	37962092	37962092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_006607	exon1	c.G37T	p.E13X	ATTGGAGAACCAG	.	164.0	57.0	187.0	0.0	.	.
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10823446	10823446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	QTRT1	NM_031209	exon8	c.G874T	p.A292S	GGCTCTGCCCTGG	.	103.0	54.0	82.0	0.0	.	91
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56566691	56566691	+	RNA	SNP	G	G	A	rs183558657	by1000genomes	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	CCTGGCGTCTTTT	.	87.0	23.0	145.0	0.0	G|0.999;A|0.000	.
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50906873	50906873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SBF1	NM_002972	exon2	c.G73T	p.G25C	TCTGGCCCTGGCC	.	52.0	14.0	50.0	0.0	.	90
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3678680	3678680	+	Missense_Mutation	SNP	G	G	A	rs143792155		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SDK1	NM_152744	exon3	c.G503A	p.R168H	TTTACCGCTGCGT	.	135.0	30.0	118.0	0.0	G|1.000;A|0.000	138
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84628838	84628838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SEMA3D	NM_152754	exon17	c.A2252C	p.K751T	ATGTGCTTCCACT	.	313.0	84.0	319.0	0.0	.	138
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78222437	78222437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLC26A11	NM_173626	exon15	c.G1486A	p.A496T	ATGGAGGCTCTGC	.	186.0	56.0	249.0	0.0	.	90
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158651436	158651436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SPTA1	NM_003126	exon4	c.412delC	p.H138fs	ACAGGTGGCGTAG	.	233.0	70.0	187.0	0.0	.	142
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53085080	53085080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ST18	NM_014682	exon10	c.G341A	p.R114K	TCCTTCCTACTGG	.	66.0	8.0	38.0	0.0	.	95
SVEP1	79987	ucsc.edu;bcgsc.ca	37	9	113171173	113171173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SVEP1	NM_153366	exon38	c.A6707G	p.K2236R	ACTGACTTATAGC	.	24.0	4.0	43.0	0.0	.	75
SWI5	375757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131038585	131038585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001040011	exon1	c.C161T	p.P54L	CTGGCCCGGTGCA	.	82.0	29.0	134.0	0.0	.	.
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64497758	64497758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SYNE2	NM_182914	exon45	c.C6904T	p.Q2302X	AGTTTACAAGATG	.	258.0	85.0	393.0	1.0	.	164
THEG	51298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	375911	375911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	THEG	NM_016585	exon1	c.G60T	p.R20S	TTCCGACCTGCCC	.	46.0	10.0	40.0	0.0	.	91
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155498016	155498016	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TIAM2	NM_012454	exon9	c.A2428T	p.I810F	TGGGAAATCCAGA	.	71.0	37.0	99.0	0.0	.	93
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147824847	147824847	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TTC29	NM_031956	exon6	c.T435A	p.A145A	GGCCAGAGCATAC	.	95.0	45.0	130.0	0.0	.	90
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35471393	35471393	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TULP1	NM_003322	exon13	c.C1266T	p.T422T	GATGACGGTCATG	.	56.0	13.0	81.0	0.0	.	92
WASF3	10810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	27255234	27255234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WASF3	NM_006646	exon8	c.C760T	p.P254S	GCTACTCCCAACC	.	107.0	32.0	209.0	0.0	.	91
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1634133	1634133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WDR81	NM_001163809	exon3	c.T3860C	p.L1287P	CGGTCCTGGGCGA	.	80.0	29.0	119.0	0.0	.	91
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113067682	113067682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZC3H6	NM_198581	exon4	c.G557A	p.G186E	CTTTAGGGTCATC	.	71.0	31.0	112.0	0.0	.	93
ZFAND5	7763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74970914	74970914	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZFAND5	NM_001102421	exon6	c.A597G	p.R199R	CTCTTTTCTGATT	.	161.0	40.0	281.0	0.0	.	90
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52375810	52375810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF577	NM_032679	exon7	c.A1433C	p.Y478S	GTAAGATACAAGA	.	69.0	24.0	57.0	0.0	.	91
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35274530	35274530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF770	NM_014106	exon3	c.G1106A	p.C369Y	AGATCACAATTTC	.	77.0	19.0	128.0	0.0	.	91
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2934207	2934207	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF77	NM_021217	exon4	c.C918T	p.S306S	GTAACAGCTGAAT	.	157.0	78.0	198.0	0.0	.	91
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29438502	29438502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNRF3	NM_001206998	exon3	c.G446C	p.R149P	TACAGCGGGGAGC	.	61.0	12.0	72.0	0.0	.	69
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117658021	117658022	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	p.A1377E	CTTCAGGGCTCGG	.	41.0	11.0	60.0	0.0	.	.