Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA6 23460 hgsc.bcm.edu;bcgsc.ca 37 17 67110945 67110945 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ABCA6 NM_080284 exon13 c.1740delT p.F580fs TTTAGCAAACAGG . 286.0 81.0 194.0 0.0 . 159 AK7 122481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 96875279 96875279 + Splice_Site SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . AK7 NM_152327 exon4 c.498+1G>A . GACCCCGTAAGTA . 61.0 8.0 77.0 0.0 . 228 ANKLE1 126549 ucsc.edu;bcgsc.ca 37 19 17396254 17396254 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_152363 exon7 c.T1391C p.L464P AGGACCTGCCAGC . 42.0 4.0 46.0 0.0 . . ANKRD12 23253 broad.mit.edu;bcgsc.ca 37 18 9258431 9258431 + Silent SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ANKRD12 NM_015208 exon9 c.C5166A p.A1722A AAATGCCGAAGAT . 107.0 5.0 67.0 0.0 . 92 ANKRD24 170961 ucsc.edu;bcgsc.ca 37 19 4216326 4216326 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ANKRD24 NM_133475 exon17 c.A1316G p.E439G CCCAGGAACACCT . 40.0 4.0 49.0 0.0 . 68 ARHGEF28 64283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 73048919 73048919 + Missense_Mutation SNP G G T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_001080479 exon4 c.G367T p.A123S CCATTTGCCTTGA . 154.0 36.0 97.0 0.0 . . ASH1L 55870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155308071 155308071 + Missense_Mutation SNP T T G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ASH1L NM_018489 exon27 c.A8612C p.N2871T ATCTCATTGGCTG . 192.0 57.0 127.0 0.0 . 234 ASRGL1 80150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62159568 62159568 + Missense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ASRGL1 NM_001083926 exon7 c.G739A p.A247T GAAGAGGCTGCGG . 142.0 28.0 88.0 0.0 . 90 ATP5J2-PTCD1 100526740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99032672 99032672 + Missense_Mutation SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_001198879 exon3 c.G341A p.S114N CCCAGGCTGCCCG . 47.0 15.0 46.0 0.0 . . ATP7B 540 broad.mit.edu;bcgsc.ca 37 13 52511519 52511519 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ATP7B NM_000053 exon19 c.T3914C p.L1305P ACATCCAGCAAAT . 73.0 5.0 58.0 0.0 . 92 BCL11A 53335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 60688821 60688821 + Missense_Mutation SNP A A C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . BCL11A NM_018014 exon4 c.T1226G p.L409R TCGCACAGGTTGC . 132.0 29.0 118.0 0.0 . 1149 C1orf68 100129271 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 152692135 152692135 + Frame_Shift_Del DEL C C - novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . C1orf68 NM_001024679 exon1 c.138delC p.G46fs GACAGGCCCTGCT . 242.0 61.0 213.0 0.0 . 69 CARD14 79092 broad.mit.edu;bcgsc.ca 37 17 78156589 78156589 + Missense_Mutation SNP G G T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . CARD14 NM_024110 exon3 c.G349T p.G117C TTTAGCGGTGAGA . 161.0 7.0 92.0 0.0 . 231 CD177 57126 broad.mit.edu;ucsc.edu;mdanderson.org 37 19 43866283 43866283 + RNA SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . CD177 . . . . GGCCCAACCTTCC . 196.0 19.0 182.0 0.0 . 22 CD300LG 146894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 41932594 41932594 + Missense_Mutation SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . CD300LG NM_145273 exon5 c.C739T p.R247C ATGGTCCGCATAC . 116.0 25.0 60.0 0.0 . 90 CECR2 27443 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 18028982 18028982 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . CECR2 . . . . ATCTGCATTTCCA . 91.0 22.0 66.0 0.0 . 70 CHTF18 63922 broad.mit.edu;mdanderson.org 37 16 847042 847042 + Missense_Mutation SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . CHTF18 NM_022092 exon20 c.C2683T p.H895Y CGCAACCATGAGC . 30.0 6.0 48.0 0.0 . 227 COL11A1 1301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 103491141 103491141 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . COL11A1 NM_080629 exon7 c.A962G p.Y321C TAGTTGTATTCTT . 443.0 67.0 329.0 0.0 . 586 CYP4Z1 199974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 47571829 47571829 + Missense_Mutation SNP C C G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . CYP4Z1 NM_178134 exon9 c.C1097G p.T366R ACACCACGATGTG . 308.0 107.0 225.0 0.0 . 91 DCHS1 8642 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 6662505 6662505 + Missense_Mutation SNP G G A rs200060711 TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . DCHS1 NM_003737 exon2 c.C340T p.R114C GGTAGCGGTCCCG . 51.0 5.0 43.0 0.0 G|0.999;A|0.000 73 DCLRE1C 64421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 14976379 14976379 + Silent SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . DCLRE1C NM_001033855 exon8 c.G678A p.Q226Q CCATACCTGGACT . 242.0 75.0 166.0 0.0 . 228 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 52393977 52393977 + Nonsense_Mutation SNP C C T rs200763734 alternate_allele TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . DNAH1 NM_015512 exon27 c.C4453T p.Q1485X CGCATGCAGCGGG . 129.0 38.0 111.0 0.0 C|0.998;G|0.002 67 FAM151A 338094 broad.mit.edu;ucsc.edu 37 1 55075294 55075294 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . FAM151A NM_176782 exon8 c.G1405T p.E469X AGACCTCAGCCAC . 27.0 3.0 16.0 0.0 . 90 FAM208A 23272 broad.mit.edu;bcgsc.ca 37 3 56700338 56700338 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_001112736 exon7 c.T972C p.S324S AGTAAAAGACACA . 133.0 7.0 100.0 0.0 . . FAM63A 55793 hgsc.bcm.edu;broad.mit.edu 37 1 150974678 150974679 + In_Frame_Ins INS - - GAG novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . FAM63A NM_001163258 exon3 c.560_561insCTC p.L187delinsPL GCAAGGAGAGGGC . 268.0 63.0 197.0 0.0 . 91 FANCA 2175 ucsc.edu;bcgsc.ca 37 16 89857938 89857938 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . FANCA NM_000135 exon14 c.T1232C p.V411A CGCGCCACCCAGT . 35.0 4.0 36.0 0.0 . 1130 FLT3LG 2323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49979723 49979723 + Missense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . FLT3LG NM_001204503 exon4 c.G242A p.R81H CACAGCGCTGGAT . 68.0 16.0 48.0 0.0 . 115 GNAT1 2779 broad.mit.edu;mdanderson.org 37 3 50231028 50231028 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . GNAT1 NM_144499 exon4 c.G381A p.W127X GCTGTGGAAGGAC . 52.0 6.0 43.0 0.0 . 417 GPR162 27239 broad.mit.edu;bcgsc.ca 37 12 6934836 6934836 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . GPR162 NM_019858 exon3 c.A1055G p.D352G GAGATGACGGTCA . 150.0 6.0 109.0 0.0 . 92 GRM1 2911 broad.mit.edu;bcgsc.ca 37 6 146480536 146480536 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . GRM1 NM_000838 exon3 c.A753G p.E251E CCAGGAAGGCCTC . 91.0 6.0 80.0 0.0 . 1080 GSDMB 55876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38068752 38068752 + Splice_Site SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . GSDMB NM_001165958 exon4 c.236-2A>G . TTGACCTGGAAAG . 183.0 48.0 147.0 0.0 . 153 GTF3C1 2975 ucsc.edu;bcgsc.ca 37 16 27487845 27487845 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . GTF3C1 NM_001520 exon29 c.T4280C p.L1427P AGCACCAGAAAGT . 34.0 4.0 31.0 0.0 . 94 IFT140 9742 ucsc.edu;bcgsc.ca 37 16 1612054 1612054 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . IFT140 NM_014714 exon18 c.T2131C p.F711L GGGGGAAGCTCTC . 42.0 4.0 49.0 1.0 . 95 IL12RB2 3595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67787396 67787396 + Missense_Mutation SNP C C A rs149868445 byfrequency;alternate_allele TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . IL12RB2 NM_001559 exon3 c.C188A p.S63Y ACTATTCCAGACG . 204.0 65.0 185.0 0.0 C|1.000;T|0.000 92 KCNJ8 3764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 21926286 21926286 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . KCNJ8 NM_004982 exon2 c.A265G p.I89V ACATGATAGCGAA . 126.0 15.0 75.0 0.0 . 90 KCNT2 343450 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 196274453 196274458 + In_Frame_Del DEL TAATAC TAATAC - novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 TAATAC TAATAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . KCNT2 NM_198503 exon22 c.2501_2506del p.834_836del CTGTGATAATACT . 109.0 17.0 86.0 0.0 . 159 KRCC1 51315 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 88327723 88327723 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . KRCC1 NM_016618 exon4 c.T360C p.F120F TTGATTAAAGTTC . 497.0 135.0 348.0 1.0 . 69 LNPEP 4012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 96358073 96358073 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . LNPEP NM_005575 exon14 c.A2446G p.M816V CCATCTATGCGAG . 189.0 54.0 101.0 0.0 . 229 MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 140993326 140993326 + Missense_Mutation SNP G G C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MAGEC1 NM_005462 exon4 c.G136C p.D46H AGCGACGACACCC . 59.0 24.0 41.0 0.0 . 133 MFSD2B 388931 ucsc.edu;bcgsc.ca 37 2 24247135 24247135 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MFSD2B NM_001080473 exon13 c.T1484C p.L495P TGAGCCTTCGGAG . 65.0 6.0 47.0 0.0 . 24 MICAL1 64780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 109768571 109768571 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MICAL1 NM_022765 exon16 c.C2059T p.Q687X GGTGTTGGGATGG . 93.0 13.0 82.0 0.0 . 154 MLXIPL 51085 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 73020297 73020297 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MLXIPL NM_032954 exon6 c.A763G p.T255A AGAGAGTGTCTGA . 65.0 18.0 52.0 1.0 . 91 MME 4311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 154886382 154886382 + Missense_Mutation SNP A A C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MME NM_007287 exon19 c.A1882C p.N628H TATGGAAACTTTT . 393.0 100.0 235.0 0.0 . 516 MROH2B 133558 broad.mit.edu;bcgsc.ca 37 5 41065590 41065590 + Missense_Mutation SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_173489 exon4 c.G204T p.M68I TCTGAGCATCTGA . 81.0 7.0 62.0 0.0 . . MROH2B 133558 broad.mit.edu;bcgsc.ca 37 5 41065593 41065593 + Splice_Site SNP C C G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_173489 exon5 c.202-1G>C . GAGCATCTGAGGA . 79.0 7.0 59.0 0.0 . . MROH2B 133558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 41065451 41065451 + Missense_Mutation SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_173489 exon4 c.G343A p.E115K CCAATTCAGCCAG . 80.0 10.0 47.0 0.0 . . MRPS16 51021 broad.mit.edu;bcgsc.ca 37 10 75010748 75010748 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MRPS16 NM_016065 exon3 c.T276C p.G92G AGCAAGACCTAAA . 155.0 8.0 89.0 0.0 . 90 MYO6 4646 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 76596568 76596568 + Missense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . MYO6 NM_004999 exon25 c.G2515A p.G839S ATTGATGGTCTGG . 78.0 9.0 70.0 0.0 . 92 NOS2 4843 ucsc.edu;bcgsc.ca 37 17 26106023 26106023 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . NOS2 NM_000625 exon10 c.T1064C p.M355T AGCAGCATGTTGG . 43.0 4.0 31.0 0.0 . 156 NPFF 8620 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 53900573 53900573 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . NPFF NM_003717 exon3 c.T329C p.F110S TTCCCAAAGCGTT . 68.0 17.0 54.0 0.0 . 90 NRXN1 9378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 50758388 50758388 + Missense_Mutation SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . NRXN1 NM_001135659 exon12 c.G2444A p.R815H TTCACACGTCCTG . 101.0 20.0 78.0 0.0 . 92 OR5B12 390191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 58207461 58207461 + Missense_Mutation SNP G G T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . OR5B12 NM_001004733 exon1 c.C164A p.T55N ATGGGGGTGTGGA . 178.0 47.0 102.0 0.0 . 68 OSGIN2 734 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 90937753 90937753 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . OSGIN2 NM_001126111 exon6 c.T1643C p.I548T ATGGGATAGCTTA . 218.0 126.0 81.0 0.0 . 68 PAX1 5075 broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 21687580 21687580 + Missense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . PAX1 NM_006192 exon2 c.G791A p.G264D CCACGGGCGCCAA . 44.0 5.0 47.0 0.0 . 227 PCDH11Y 83259 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 Y 4968285 4968285 + Missense_Mutation SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_032972 exon2 c.C2666A p.P889Q CTACCCCAAACCC . 484.0 120.0 258.0 0.0 . . PER2 8864 broad.mit.edu;bcgsc.ca 37 2 239155099 239155099 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . PER2 NM_022817 exon23 c.T3685C p.S1229P CCAGAGAAGGAAT . 148.0 6.0 106.0 0.0 . 154 PHF21B 112885 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 45289355 45289355 + Silent SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . PHF21B NM_138415 exon7 c.C942T p.S314S GAGGCCGCTGTAG . 195.0 36.0 139.0 2.0 . 93 RASGRP2 10235 ucsc.edu;bcgsc.ca 37 11 64496440 64496440 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . RASGRP2 NM_001098671 exon15 c.A1666G p.S556G CCAGGCTCACACT . 46.0 4.0 36.0 1.0 . 227 RBM46 166863 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 155719372 155719372 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . RBM46 NM_144979 exon3 c.A561G p.A187A TTTTGCATTTGTG . 219.0 43.0 192.0 2.0 . 69 RBM48 84060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 92158153 92158153 + Missense_Mutation SNP G G T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_032120 exon1 c.G26T p.G9V AGCTAGGGAGTTT . 176.0 46.0 134.0 0.0 . . RBP5 83758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 7281340 7281340 + Missense_Mutation SNP A A T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . RBP5 NM_031491 exon1 c.T32A p.F11Y GAGACAAAGCGGT . 296.0 73.0 223.0 0.0 . 91 SARS2 54938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39408640 39408640 + Missense_Mutation SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SARS2 NM_001145901 exon12 c.G977T p.C326F CTGGAGCAAACCA . 190.0 60.0 140.0 0.0 . 93 SBNO1 55206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123825580 123825580 + Missense_Mutation SNP T T G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SBNO1 NM_001167856 exon4 c.A606C p.R202S CCACATTCTAGCT . 237.0 66.0 145.0 0.0 . 292 SEMG2 6407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43851219 43851219 + Missense_Mutation SNP A A T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SEMG2 NM_003008 exon2 c.A946T p.I316F ATTTCTATCCAAA . 257.0 64.0 172.0 0.0 . 91 SERPINH1 871 broad.mit.edu;bcgsc.ca 37 11 75279857 75279857 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SERPINH1 NM_001207014 exon4 c.T704C p.M235T GTGTCATGATGAT . 99.0 7.0 77.0 0.0 . 228 SETD2 29072 broad.mit.edu;bcgsc.ca 37 3 47163442 47163442 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SETD2 NM_014159 exon3 c.T2684C p.L895P AGAGTTAGACTGT . 116.0 7.0 53.0 0.0 . 1273 SHROOM3 57619 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 77677614 77677618 + Frame_Shift_Del DEL TTCTA TTCTA - novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 TTCTA TTCTA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SHROOM3 NM_020859 exon8 c.4722_4726del p.1574_1576del CAAACTTTCTAAA . 132.0 19.0 127.0 0.0 . 93 SLAMF6 114836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160461021 160461021 + Silent SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SLAMF6 NM_052931 exon3 c.T540C p.T180T GGAGACAGTGAGG . 238.0 71.0 181.0 0.0 . 228 SLITRK2 84631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 144904543 144904543 + Silent SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . SLITRK2 NM_001144005 exon5 c.C600A p.G200G TGCTGGCGTCCTT . 93.0 37.0 78.0 0.0 . 136 SPATA24 202051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 138739744 138739744 + Silent SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_194296 exon1 c.G6T p.A2A GGGCGTCGCCATC . 44.0 12.0 26.0 0.0 . . SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149485526 149485526 + Missense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . . NM_198455 exon27 c.G3932A p.G1311D TGGAGGGCTGCTT . 100.0 26.0 109.0 0.0 . . ST3GAL1 6482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 134477129 134477129 + Missense_Mutation SNP G G C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ST3GAL1 NM_173344 exon7 c.C575G p.P192R CTCTCAGGGTACA . 336.0 176.0 168.0 0.0 . 90 STBD1 8987 ucsc.edu;bcgsc.ca 37 4 77228038 77228038 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . STBD1 NM_003943 exon1 c.A116G p.E39G AGCAGGAGAAAGA . 57.0 5.0 58.0 2.0 . 69 STRN4 29888 ucsc.edu;bcgsc.ca 37 19 47225275 47225275 + Missense_Mutation SNP A A G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . STRN4 NM_001039877 exon16 c.T2081C p.V694A GGGTCCACGGCTA . 30.0 4.0 28.0 0.0 . 90 TBX2 6909 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 59479112 59479112 + Missense_Mutation SNP A A T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . TBX2 NM_005994 exon2 c.A463T p.M155L CTGCTGATGGACA . 70.0 9.0 74.0 1.0 . 226 TMEM106C 79022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 48359720 48359720 + Silent SNP C C T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . TMEM106C NM_001143843 exon4 c.C351T p.G117G TGACGGCATCAAA . 740.0 47.0 453.0 0.0 . 90 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 7578419 7578419 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f TP53,NS,carcinoma,0 TP53 NM_000546 exon5 c.G511T p.E171X CAACCTCCGTCAT . 64.0 23.0 88.0 0.0 . 70225 TRHR 7201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110131669 110131669 + Silent SNP C C A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f TRHR,nipple,malignant_melanoma,+1 TRHR NM_003301 exon2 c.C1182A p.S394S GGTATCCTTTAGC . 297.0 67.0 117.0 0.0 . 620 TRPM7 54822 bcgsc.ca;mdanderson.org 37 15 50897161 50897161 + Missense_Mutation SNP T T G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . TRPM7 NM_017672 exon21 c.A2890C p.I964L AGTAAATTAATCT . 196.0 26.0 151.0 1.0 . 392 UCP3 7352 ucsc.edu;bcgsc.ca 37 11 73714875 73714875 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . UCP3 NM_003356 exon6 c.A821G p.K274R CACCCCTTGTAGA . 41.0 4.0 35.0 0.0 . 91 ZCCHC2 54877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 60242702 60242702 + Missense_Mutation SNP A A C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ZCCHC2 NM_017742 exon13 c.A3388C p.N1130H AATGGGAATGTCT . 197.0 55.0 125.0 0.0 . 432 ZNF365 22891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 64148204 64148204 + Missense_Mutation SNP G G T novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ZNF365 NM_014951 exon3 c.G793T p.V265F AAGGAGGTTCAAG . 160.0 23.0 125.0 0.0 . 92 ZNF462 58499 broad.mit.edu;mdanderson.org 37 9 109688981 109688981 + Missense_Mutation SNP T T C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ZNF462 NM_021224 exon3 c.T2788C p.C930R CGGTTTTGTTCAT . 66.0 17.0 47.0 1.0 . 95 ZNF596 169270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 195803 195803 + Missense_Mutation SNP G G A novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ZNF596 NM_173539 exon6 c.G956A p.C319Y GTAAATGTTCTTA . 149.0 54.0 116.0 0.0 . 90 ZNF687 57592 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 151262327 151262328 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ZNF687 NM_020832 exon6 c.2808_2809insC p.E936fs CCCTGAGCCCCCC . 105.0 17.0 94.0 0.0 . 92 ZP1 22917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 60641219 60641219 + Missense_Mutation SNP T T G novel TCGA-DD-A1EI-01A-11D-A12Z-10 TCGA-DD-A1EI-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c016d025-3c92-41c5-b846-493b1fcce79e f48e484a-7373-4ffb-bbd7-41c3d2f91d5f . ZP1 NM_207341 exon9 c.T1543G p.S515A CTGGACTCAGGCT . 50.0 12.0 37.0 0.0 . 90