Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48313397	48313397	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCA13	NM_152701	exon17	c.A4134G	p.L1378L	CACGTTAAATTCC	.	82.0	20.0	66.0	0.0	.	521
ADCY10	55811	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	167874253	167874253	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADCY10	NM_018417	exon2	c.C126G	p.V42V	CATCAGGACTCCG	.	375.0	84.0	167.0	0.0	.	493
AGK	55750	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141333731	141333731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AGK	NM_018238	exon10	c.A619T	p.T207S	GCAATGACCGGCC	.	59.0	19.0	34.0	0.0	.	290
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27876868	27876868	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AHDC1	NM_001029882	exon6	c.C1759A	p.R587R	GCCGTCGTTTTTT	.	257.0	24.0	236.0	0.0	.	90
ALPK1	80216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	113356354	113356354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ALPK1	NM_001102406	exon12	c.G3085A	p.E1029K	GCCCAGGAAACTA	.	124.0	20.0	130.0	0.0	.	337
ATG2A	23130	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64664282	64664282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG2A	NM_015104	exon38	c.G5210T	p.R1737L	TTCTTGCGGATGT	.	143.0	27.0	109.0	0.0	.	69
BCL10	8915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85733444	85733444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BCL10	NM_003921	exon3	c.A568G	p.T190A	GTGTAGTTGAAGA	.	78.0	15.0	74.0	0.0	.	659
BIRC6	57448	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32733177	32733177	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BIRC6	NM_016252	exon51	c.T9831C	p.A3277A	TTCTGCTGTCTGC	.	217.0	92.0	167.0	0.0	.	233
BMPER	168667	hgsc.bcm.edu;ucsc.edu	37	7	33976996	33976996	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BMPER	NM_133468	exon4	c.C315A	p.C105X	ACAGTGCAAAGGT	.	100.0	24.0	109.0	0.0	.	92
C14orf23	387978	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	29242038	29242038	+	RNA	SNP	T	T	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C14orf23	.	.	.	.	AAAATCTGCGCAG	.	108.0	32.0	117.0	0.0	.	23
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6718129	6718129	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3	NM_000064	exon4	c.C480T	p.G160G	CGTCCGGCCCACG	.	98.0	31.0	91.0	0.0	.	95
C3orf20	84077	ucsc.edu;bcgsc.ca	37	3	14799024	14799024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3orf20	NM_032137	exon13	c.A2087G	p.E696G	ACGTGGAGCTGGA	.	341.0	79.0	263.0	1.0	.	94
C3orf22	152065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126270923	126270923	+	Silent	SNP	G	G	A	rs34760151	byfrequency;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3orf22	NM_152533	exon3	c.C132T	p.P44P	CTCCCAGGGCTGC	.	113.0	30.0	93.0	0.0	G|0.687;C|0.313	90
CCDC33	80125	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	74560701	74560701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC33	NM_025055	exon5	c.G448A	p.A150T	GGGAAAGCCGATG	.	160.0	42.0	131.0	0.0	.	95
CD207	50489	ucsc.edu;bcgsc.ca	37	2	71062835	71062835	+	Silent	SNP	T	T	C	rs79763209		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CD207	NM_015717	exon1	c.A72G	p.R24R	GCTTGCTCGGGGC	.	250.0	34.0	216.0	1.0	.	46
CIB3	117286	hgsc.bcm.edu;bcgsc.ca	37	19	16275656	16275656	+	Missense_Mutation	SNP	C	C	T	rs200526470		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CIB3	NM_054113	exon5	c.G415A	p.G139R	TCAGCCCCCCCCG	.	171.0	12.0	159.0	0.0	.	131
COL1A2	1278	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94043219	94043219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL1A2	NM_000089	exon28	c.G1625T	p.G542V	AAGGTGGAAAAGG	.	185.0	20.0	157.0	0.0	.	521
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238285641	238285641	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL6A3	NM_004369	exon7	c.C2844T	p.V948V	TCCTGCGACCAGC	.	226.0	68.0	141.0	2.0	.	526
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49743118	49743118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAJC22	NM_024902	exon2	c.A463G	p.I155V	CTGCCCATTAGCG	.	86.0	18.0	54.0	0.0	.	159
DUOX2	50506	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45386375	45386375	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DUOX2	NM_014080	exon34	c.C4620T	p.H1540H	CATGAAGTGGGCT	.	171.0	50.0	126.0	0.0	.	95
DYNC1H1	1778	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102489191	102489191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DYNC1H1	NM_001376	exon43	c.A8611G	p.I2871V	CGACCCATCTTGT	.	125.0	22.0	128.0	0.0	.	98
ELOVL7	79993	hgsc.bcm.edu;mdanderson.org	37	5	60050627	60050627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ELOVL7	NM_001104558	exon8	c.C670T	p.Q224X	AGAACTGGCTTAT	.	112.0	33.0	82.0	0.0	.	90
EML6	400954	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	55040425	55040425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001039753	exon2	c.C254T	p.P85L	AGGAGCCATATAT	.	127.0	39.0	99.0	0.0	.	.
FER1L6	654463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	125103757	125103757	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FER1L6	NM_001039112	exon34	c.C4485T	p.H1495H	CTTTCACCCTGGG	.	208.0	122.0	99.0	0.0	.	100
FGF13	2258	ucsc.edu;bcgsc.ca	37	X	137717737	137717737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FGF13	NM_001139500	exon6	c.G512A	p.R171H	TGCTGACGGTATA	.	168.0	60.0	118.0	1.0	.	626
GALR1	2587	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	74962810	74962810	+	Silent	SNP	G	G	A	rs5375	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GALR1	NM_001480	exon1	c.G306A	p.V102V	CTGGGTGCTGGGC	.	182.0	55.0	127.0	0.0	G|0.936;T|0.064	522
GHITM	27069	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85904722	85904722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GHITM	NM_014394	exon5	c.A433C	p.I145L	ATAGCAATCAGCA	.	182.0	67.0	175.0	0.0	.	90
GOT1L1	137362	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	37791908	37791908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GOT1L1	NM_152413	exon9	c.A1169G	p.Y390C	GTGATGTAATTTA	.	305.0	64.0	331.0	0.0	.	23
HAVCR1	26762	hgsc.bcm.edu;bcgsc.ca	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	447.0	33.0	367.0	0.0	.	92
HECTD1	25831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	31626433	31626433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HECTD1	NM_015382	exon11	c.G1699A	p.D567N	CAACATCAGAATC	.	188.0	70.0	194.0	0.0	.	570
HTT	3064	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3241656	3241656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HTT	NM_002111	exon67	c.G9299A	p.R3100K	TCTACAGACACCA	.	176.0	26.0	139.0	0.0	.	281
HYOU1	10525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118926262	118926262	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HYOU1	NM_006389	exon4	c.G207A	p.P69P	GATCACCGGTGTT	.	152.0	20.0	107.0	0.0	.	90
IKZF1	10320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50467992	50467992	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IKZF1	NM_006060	exon8	c.C1227T	p.S409S	GCGCAGCGGTCTC	.	117.0	20.0	71.0	0.0	.	1242
KANK4	163782	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62739460	62739460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KANK4	NM_181712	exon3	c.G1316C	p.S439T	TCCATGCTGCCTA	.	199.0	47.0	121.0	0.0	.	74
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	155838473	155838473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCNAB1	NM_172160	exon1	c.73delG	p.G25fs	CAGTCTGGGTTTT	.	129.0	26.0	110.0	0.0	.	94
KIAA1731	85459	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93432541	93432541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIAA1731	NM_033395	exon15	c.T4463A	p.F1488Y	GTAAATTTGAGGA	.	149.0	43.0	106.0	0.0	.	22
LIPH	200879	ucsc.edu;bcgsc.ca	37	3	185252690	185252690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LIPH	NM_139248	exon2	c.G280A	p.G94S	GCAAACCCTTTAC	.	208.0	61.0	164.0	1.0	.	92
LTBP2	4053	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75018978	75018978	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LTBP2	NM_000428	exon6	c.G1311A	p.E437E	TGGAGGCTCCCTG	.	117.0	24.0	102.0	1.0	.	92
MAP1B	4131	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71492183	71492183	+	Missense_Mutation	SNP	G	G	A	rs144088322		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP1B	NM_005909	exon5	c.G3001A	p.E1001K	CGAGCCGAAGAAG	.	127.0	43.0	128.0	0.0	G|1.000;A|0.000	155
MBD1	4152	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47796066	47796066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MBD1	NM_001204136	exon16	c.C1901T	p.S634L	GGTGGTGAGAGAC	.	207.0	52.0	171.0	1.0	.	228
MICA	100507436	hgsc.bcm.edu;bcgsc.ca	37	6	31380100	31380100	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001177519	exon5	c.893-2A>C	.	TTTTTCAGGGAAA	.	218.0	13.0	137.0	0.0	.	.
MSH2	4436	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	47639551	47639551	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MSH2	NM_000251	exon4	c.646-2A>T	.	CAAAATAGATAAT	.	293.0	82.0	211.0	0.0	.	2445
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	8455401	8455401	+	Silent	SNP	A	A	G	rs200432425		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYH10	NM_001256012	exon9	c.T882C	p.F294F	CTGGTAAAAGATA	.	91.0	7.0	124.0	0.0	A|0.999;G|0.001	92
NR3C1	2908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	142680214	142680214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NR3C1	NM_001024094	exon5	c.T1586G	p.L529R	GGGGTGAGTTGTG	.	252.0	76.0	234.0	0.0	.	92
OR4C16	219428	hgsc.bcm.edu;bcgsc.ca	37	11	55339830	55339830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR4C16	NM_001004701	exon1	c.C227G	p.T76S	CCATAACCCCTAG	.	217.0	11.0	145.0	0.0	.	70
OR6S1	341799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21109487	21109487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR6S1	NM_001001968	exon1	c.G364A	p.A122T	GATCCGCAGACAT	.	118.0	23.0	114.0	0.0	.	70
OR7A10	390892	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14952035	14952035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR7A10	NM_001005190	exon1	c.T655G	p.S219A	TCTTAGAGTAAGA	.	65.0	15.0	43.0	0.0	.	68
OVGP1	5016	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111957947	111957947	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OVGP1	NM_002557	exon11	c.A1176G	p.L392L	TTGTGGTAAAGAA	.	95.0	29.0	84.0	0.0	.	135
PCBP3	54039	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	21	47320946	47320946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCBP3	NM_001130141	exon5	c.C258A	p.C86X	AAACTGCCCAGAG	.	90.0	13.0	93.0	0.0	.	227
PKN2	5586	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89236054	89236054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PKN2	NM_006256	exon4	c.C524A	p.T175K	ATGGTACAGCTCA	.	141.0	34.0	132.0	0.0	.	522
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102349777	102349777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPP2R5C	NM_001161726	exon7	c.G672A	p.E224E	TTTAGAGCTCTTT	.	91.0	15.0	94.0	0.0	.	659
RANBP2	5903	hgsc.bcm.edu;bcgsc.ca	37	2	109379816	109379816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RANBP2	NM_006267	exon20	c.C2821A	p.P941T	TATGGTCCTCCTG	.	247.0	11.0	174.0	0.0	.	675
RANBP2	5903	hgsc.bcm.edu;bcgsc.ca	37	2	109379840	109379840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RANBP2	NM_006267	exon20	c.C2845G	p.P949A	GAGTCTCCTGCAA	.	224.0	10.0	140.0	0.0	.	675
RBM5	10181	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50152926	50152926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RBM5	NM_005778	exon21	c.G1905T	p.E635D	ACTTGAGAGTGAG	.	124.0	37.0	117.0	1.0	.	278
RCBTB1	55213	broad.mit.edu;bcgsc.ca	37	13	50118925	50118925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RCBTB1	NM_018191	exon10	c.T1120C	p.F374L	TTCGAAACTTCAG	.	88.0	4.0	72.0	0.0	.	91
SENP1	29843	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48482714	48482714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SENP1	NM_001267594	exon5	c.T250C	p.S84P	CGCCTGAGCCAAG	.	100.0	38.0	67.0	0.0	.	660
SLC36A3	285641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	150666921	150666921	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC36A3	NM_001145017	exon7	c.C717A	p.P239P	CAGGAAGGGCAGG	.	224.0	60.0	165.0	0.0	.	93
SLC45A4	57210	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231725	142231725	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC45A4	NM_001080431	exon2	c.C228T	p.C76C	GCCAACGCAGAGG	.	217.0	32.0	101.0	0.0	.	70
SLITRK6	84189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86369434	86369434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLITRK6	NM_032229	exon2	c.G1210A	p.E404K	ATCCTTCTTCAAG	.	107.0	13.0	40.0	0.0	.	137
SMARCC2	6601	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56565643	56565643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SMARCC2	NM_139067	exon21	c.C2005G	p.H669D	GAAAATGCAAGAT	.	106.0	20.0	93.0	0.0	.	229
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	133711936	133711936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPATA19	NM_174927	exon6	c.T502C	p.X168R	GCTCTCAGCAGTC	.	117.0	41.0	66.0	0.0	.	90
SSPO	23145	hgsc.bcm.edu;bcgsc.ca	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon63	c.9204+1T>C	.	AGCAGCTGCGCAG	.	310.0	15.0	329.0	0.0	.	.
SYT12	91683	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66811279	66811279	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SYT12	NM_001177880	exon5	c.G792A	p.P264P	CCTCCCGCTGCAG	.	109.0	16.0	84.0	0.0	.	91
TENM2	57451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167553853	167553853	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001122679	exon12	c.C2304T	p.R768R	CCAGCGCGTGTGC	.	231.0	66.0	199.0	0.0	.	.
TMEM62	80021	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43446967	43446967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEM62	NM_024956	exon9	c.G1120C	p.V374L	ATTTTCGTACTGA	.	152.0	15.0	101.0	0.0	.	136
TMPRSS15	5651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19770597	19770597	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMPRSS15	NM_002772	exon2	c.A195G	p.T65T	TCCGGATGTTATT	.	71.0	23.0	44.0	0.0	.	160
TNRC6A	27327	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	24826473	24826473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNRC6A	NM_014494	exon19	c.A4678C	p.I1560L	GGTGCTATTTCAA	.	214.0	60.0	178.0	0.0	.	92
TNS4	84951	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38652631	38652631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNS4	NM_032865	exon2	c.T47C	p.V16A	AAGCTGACAGCAT	.	67.0	15.0	77.0	1.0	.	155
TOMM70A	9868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100093979	100093979	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TOMM70A	NM_014820	exon7	c.C1110T	p.L370L	TTTGATGAGAGCA	.	54.0	18.0	58.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578460	7578460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	TP53,head_neck,carcinoma,-1	TP53	NM_000546	exon5	c.T470G	p.V157G	GCGCGGACGCGGG	.	93.0	34.0	145.0	0.0	.	70225
TTLL4	9654	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219604821	219604821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTLL4	NM_014640	exon4	c.G1528T	p.D510Y	ACTGAAGATACAG	.	231.0	25.0	185.0	0.0	.	93
TUSC3	7991	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	15398006	15398006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TUSC3	NM_178234	exon1	c.G67A	p.G23R	CCCACCGGGAGCT	.	198.0	79.0	152.0	0.0	.	516
VCAN	1462	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	82836233	82836233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VCAN	NM_004385	exon8	c.G7411T	p.V2471L	CCTGAGGTGCCAA	.	190.0	55.0	116.0	0.0	.	238
VCAN	1462	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82833962	82833962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VCAN	NM_004385	exon8	c.T5140C	p.W1714R	TCTGAGTGGATTT	.	89.0	30.0	77.0	0.0	.	238
WDR49	151790	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167254660	167254660	+	Missense_Mutation	SNP	G	G	A	rs200695837		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR49	NM_178824	exon7	c.C896T	p.T299M	TTACCCGTAACAA	.	75.0	19.0	81.0	0.0	G|0.999;A|0.001	155
WNT3A	89780	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	228238561	228238561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WNT3A	NM_033131	exon3	c.G518A	p.R173Q	ACGCCCGGGAGAA	.	237.0	46.0	123.0	0.0	.	91
ZFYVE27	118813	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99517436	99517436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZFYVE27	NM_001002261	exon11	c.G1142T	p.R381L	GCTCTCGATGCTG	.	172.0	57.0	158.0	0.0	.	91
ZNF862	643641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	149558251	149558251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF862	NM_001099220	exon7	c.G2002A	p.D668N	ACAGCAGATGGGT	.	187.0	63.0	177.0	0.0	.	69
CD207	50489	hgsc.bcm.edu;bcgsc.ca	37	2	71062836	71062837	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	.	.	.	p.R24E	CTTGCTCGGGGCC	.	253.0	21.0	219.0	0.0	.	.