Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABHD12 26090 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 25287496 25287496 + Missense_Mutation SNP C C G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ABHD12 NM_001042472 exon10 c.G923C p.S308T ATTCCACTACTTG . 84.0 11.0 101.0 1.0 . 91 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150531572 150531572 + Silent SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ADAMTSL4 NM_019032 exon16 c.T2694C p.P898P GCCCCCTGACATG . 90.0 45.0 71.0 0.0 . 92 AKR1C1 1645 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 5005692 5005692 + Missense_Mutation SNP T T G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . AKR1C1 NM_001353 exon1 c.T56G p.L19R CTGTCCTGGGATT . 180.0 16.0 221.0 0.0 . 516 ALB 213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 74283866 74283866 + Missense_Mutation SNP T T A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ALB NM_000477 exon12 c.T1490A p.V497D ACAGAGTCACCAA . 104.0 24.0 90.0 0.0 . 96 ANKHD1 54882 broad.mit.edu;mdanderson.org 37 5 139876827 139876827 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ANKHD1 NM_017747 exon15 c.C2968T p.Q990X CCAGCTCAGACGC . 46.0 11.0 27.0 0.0 . 185 AP2A1 160 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 50302173 50302173 + Missense_Mutation SNP T T G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . AP2A1 NM_130787 exon8 c.T929G p.L310R CCATCCTCTTCGA . 90.0 16.0 102.0 0.0 . 92 AP2A1 160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 50302171 50302171 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . AP2A1 NM_130787 exon8 c.C927T p.I309I CGCCATCCTCTTC . 90.0 17.0 104.0 0.0 . 92 AQPEP 0 broad.mit.edu;bcgsc.ca 37 5 115327955 115327955 + Missense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . NM_173800 exon5 c.C1241T p.S414F TTGTCTCCCACGA . 123.0 6.0 116.0 0.0 . . ARHGAP29 9411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 94652058 94652058 + Missense_Mutation SNP T T G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ARHGAP29 NM_004815 exon16 c.A1777C p.T593P TACCAGTTTCTGA . 108.0 16.0 146.0 0.0 . 296 ATP5J2-PTCD1 100526740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99030913 99030913 + Missense_Mutation SNP G G C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . NM_001198879 exon4 c.C729G p.N243K GTAGAGGTTGAAG . 81.0 34.0 78.0 0.0 . . ATP8B4 79895 ucsc.edu;bcgsc.ca 37 15 50271815 50271815 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ATP8B4 NM_024837 exon12 c.A1033G p.S345G CTTACCTCACATA . 52.0 4.0 36.0 0.0 . 140 BAZ2B 29994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 160194151 160194151 + Missense_Mutation SNP C C G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . BAZ2B NM_013450 exon32 c.G5587C p.E1863Q TCCGTTCTAGTGC . 185.0 28.0 169.0 0.0 . 94 BCL2L2-PABPN1 100529063 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 14 23793427 23793427 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . NM_001199864 exon8 c.C891T p.T297T CCGGACCACCAAC . 88.0 9.0 104.0 0.0 . . C6orf62 81688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 24714631 24714631 + Missense_Mutation SNP A A C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . C6orf62 NM_030939 exon3 c.T344G p.L115R GGCCAAAGAATGA . 143.0 29.0 187.0 0.0 . 90 CLEC19A 728276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19310149 19310149 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . NM_001256720 exon2 c.C243T p.A81A GCTGGCCTCCATC . 94.0 25.0 88.0 0.0 . . CNTN6 27255 ucsc.edu;bcgsc.ca;mdanderson.org 37 3 1371498 1371498 + Missense_Mutation SNP G G A rs142802849 TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . CNTN6 NM_014461 exon11 c.G1243A p.V415I AGTCCAGTTAAAA . 312.0 80.0 341.0 1.0 G|1.000;A|0.000 345 COBL 23242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 51095517 51095517 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . COBL NM_015198 exon10 c.G3276A p.K1092K TTTTTTCTTCGGC . 346.0 114.0 397.0 1.0 . 95 COL28A1 340267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 7571282 7571282 + Missense_Mutation SNP T T A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . COL28A1 NM_001037763 exon3 c.A378T p.L126F CCCTATTAAATTC . 168.0 59.0 106.0 0.0 . 93 CYP2A13 1553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41600227 41600227 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . CYP2A13 NM_000766 exon7 c.T1051C p.Y351H ATGCCCTACACAG . 212.0 39.0 215.0 0.0 . 93 DARS2 55157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 173825830 173825830 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . DARS2 NM_018122 exon16 c.G1701A p.L567L CCATCTGCTCCAG . 107.0 8.0 58.0 0.0 . 90 DBT 1629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 100672083 100672083 + Missense_Mutation SNP C C T rs150934375 TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . DBT NM_001918 exon9 c.G1127A p.R376H TGGAGGCGGTTCA . 84.0 24.0 87.0 0.0 C|1.000;T|0.000 91 DCLRE1A 9937 broad.mit.edu;bcgsc.ca 37 10 115609611 115609611 + Missense_Mutation SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . DCLRE1A NM_014881 exon2 c.T1253C p.L418P GCAGCAAGCTTCC . 110.0 7.0 86.0 0.0 . 228 DNHD1 144132 ucsc.edu;bcgsc.ca 37 11 6559930 6559930 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . DNHD1 NM_144666 exon16 c.T3215C p.V1072A GCCCCGTGCTGCA . 40.0 4.0 58.0 0.0 . 24 ETS1 2113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 128426289 128426289 + Missense_Mutation SNP G G C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . ETS1 NM_001143820 exon3 c.C111G p.N37K ACCACAGTTCATT . 164.0 38.0 147.0 0.0 . 1270 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 187541970 187541970 + Missense_Mutation SNP C C T rs189271562 TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . FAT1 NM_005245 exon10 c.G5770A p.G1924R TCTCCCCGATGTT . 170.0 18.0 215.0 0.0 C|0.999;T|0.000 34 FAT3 120114 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92613908 92613908 + Missense_Mutation SNP A A T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . FAT3 NM_001008781 exon22 c.A12139T p.T4047S CAGTGTACCTGTC . 74.0 11.0 74.0 1.0 . 73 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92534030 92534030 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . FAT3 NM_001008781 exon9 c.C7851T p.H2617H GGGCCACTTGGTC . 58.0 12.0 77.0 0.0 . 73 FDPS 2224 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155289686 155289686 + Silent SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . FDPS NM_001135821 exon10 c.A1026G p.Q342Q TCTGCAACGGGCC . 229.0 133.0 158.0 1.0 . 90 FES 2242 broad.mit.edu;mdanderson.org 37 15 91433348 91433348 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . FES NM_001143784 exon8 c.T1076C p.V359A GGCAAGTGCTGCA . 16.0 4.0 18.0 0.0 . 546 FGF6 2251 broad.mit.edu;bcgsc.ca 37 12 4554706 4554706 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . FGF6 NM_020996 exon1 c.A31G p.M11V GGGACATAGTGAT . 24.0 7.0 30.0 0.0 . 659 GAB1 2549 broad.mit.edu;bcgsc.ca 37 4 144354861 144354861 + Silent SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . GAB1 NM_207123 exon3 c.A585G p.E195E GCCCGAACCCACC . 115.0 5.0 102.0 0.0 . 1146 GFOD1 54438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 13365402 13365402 + Missense_Mutation SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . GFOD1 NM_018988 exon2 c.T746C p.V249A ACAGTGACATCCT . 38.0 10.0 38.0 0.0 . 92 HAS2 3037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 122641077 122641077 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . HAS2 NM_005328 exon2 c.G504A p.S168S GTGTTGCGAGCTT . 307.0 174.0 128.0 0.0 . 236 HEATR3 55027 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 50134209 50134209 + Missense_Mutation SNP A A C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . HEATR3 NM_182922 exon13 c.A1668C p.R556S GGTTAGAGTGAAT . 67.0 9.0 64.0 0.0 . 92 HRNR 388697 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 152185637 152185637 + Missense_Mutation SNP C C A rs150101773 byfrequency;alternate_allele TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . HRNR NM_001009931 exon3 c.G8468T p.S2823I CCAGAACTTCCCC . 551.0 54.0 358.0 0.0 C|1.000;T|0.000 93 INO80B 83444 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 74683301 74683301 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . INO80B NM_031288 exon4 c.G442A p.E148K GAAGAGGAGGAAC . 257.0 19.0 240.0 0.0 . 226 IWS1 55677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128247508 128247508 + Missense_Mutation SNP T T A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . IWS1 NM_017969 exon11 c.A2059T p.R687W TAGGCCTAGACCA . 391.0 50.0 357.0 0.0 . 91 KCNQ1 3784 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 2869140 2869140 + Silent SNP C C T rs184844767 TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KCNQ1 NM_000218 exon16 c.C1938T p.G646G TGGCGGCTCCGTC . 45.0 9.0 45.0 0.0 A|0.002;C|0.998 515 KDM3A 55818 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 86691306 86691306 + Missense_Mutation SNP C C T rs200618359 TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KDM3A NM_001146688 exon9 c.C974T p.S325F CCAACTCTCCACC . 198.0 59.0 150.0 0.0 C|0.999;T|0.000 291 KIAA1217 56243 ucsc.edu;bcgsc.ca 37 10 24669888 24669888 + Missense_Mutation SNP G G C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KIAA1217 NM_019590 exon3 c.G445C p.E149Q TCTTTGGAAGCCA . 39.0 6.0 44.0 0.0 . 98 KIF7 374654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 90189142 90189142 + Missense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KIF7 NM_198525 exon8 c.G1904A p.R635Q AAGGTCCGCCTGG . 36.0 5.0 48.0 0.0 . 523 KLHL30 377007 broad.mit.edu;bcgsc.ca 37 2 239049561 239049561 + Missense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KLHL30 NM_198582 exon2 c.C166T p.P56S AGCAGCCCCTACT . 66.0 4.0 77.0 0.0 . 22 KLK3 354 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51361569 51361569 + Missense_Mutation SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KLK3 NM_001030047 exon3 c.A491G p.E164G CAGAGGAGTGTAC . 40.0 5.0 41.0 0.0 . 228 KLK9 284366 broad.mit.edu;bcgsc.ca 37 19 51507094 51507094 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KLK9 NM_012315 exon4 c.C469T p.L157L GAAACAGCGCTGT . 87.0 6.0 76.0 0.0 . 226 KRT86 3892 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52699951 52699951 + Silent SNP C C A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . KRT86 NM_002284 exon7 c.C1134A p.A378A GAAGGCCAAGCAG . 139.0 34.0 124.0 1.0 . 91 LINC00521 256369 ucsc.edu;bcgsc.ca 37 14 94469603 94469603 + RNA SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . . . . . AGAAGAAGTGCTA . 32.0 4.0 47.0 0.0 . . LRFN2 57497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 40400289 40400289 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . LRFN2 NM_020737 exon2 c.C564T p.I188I CTCGGCGATGTGA . 76.0 13.0 101.0 0.0 . 93 LY9 4063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 160769681 160769681 + Missense_Mutation SNP C C A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . LY9 NM_001261457 exon2 c.C263A p.A88D CTCTTGCTTTCGC . 200.0 13.0 113.0 0.0 . 91 MAML2 84441 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 96074699 96074699 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . MAML2 NM_032427 exon1 c.A361G p.T121A CTGCTGTTGCTGC . 154.0 23.0 137.0 1.0 . 850 MKI67 4288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 129901194 129901194 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . MKI67 NM_002417 exon13 c.C8910T p.P2970P TCCCACGGGTTCT . 98.0 26.0 88.0 0.0 . 519 MMGT1 93380 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135049612 135049612 + Missense_Mutation SNP T T C rs199809391 TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . MMGT1 NM_173470 exon3 c.A173G p.Y58C ATACCGTAACAGG . 210.0 102.0 181.0 0.0 . 130 MMGT1 93380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135049605 135049605 + Silent SNP T T G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . MMGT1 NM_173470 exon3 c.A180C p.I60I ATGAACTATACCG . 220.0 106.0 193.0 0.0 . 130 MSH2 4436 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 47707967 47707993 + In_Frame_Del DEL ATATCATGGAACCAGCAGCAAAGAAGT ATATCATGGAACCAGCAGCAAAGAAGT - novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 ATATCATGGAACCAGCAGCAAAGAAGT ATATCATGGAACCAGCAGCAAAGAAGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . MSH2 NM_000251 exon15 c.2591_2617del p.864_873del GATATGATATCAT . 151.0 18.0 184.0 0.0 . 2445 NCKAP5L 57701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50185782 50185782 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . NCKAP5L NM_001037806 exon13 c.C3845T p.T1282M TGGGGCGTAGGGG . 65.0 19.0 38.0 0.0 . 68 NELL2 4753 ucsc.edu;bcgsc.ca 37 12 45270410 45270410 + Silent SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . NELL2 NM_001145107 exon1 c.A99G p.R33R CGCGTGTCTTGAA . 42.0 4.0 34.0 0.0 . 517 NR3C2 4306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 149357349 149357349 + Missense_Mutation SNP T T A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . NR3C2 NM_001166104 exon2 c.A664T p.S222C GAAAACTGCCAAA . 68.0 13.0 60.0 0.0 . 154 NR4A1 3164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52448249 52448249 + Missense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . NR4A1 NM_001202233 exon3 c.C176T p.A59V CCGCTGCCCCCAC . 56.0 7.0 74.0 0.0 . 186 NUAK2 81788 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 205290713 205290713 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . NUAK2 NM_030952 exon1 c.C44T p.S15L GCGGCCGAGGGAG . 81.0 21.0 55.0 0.0 . 391 OLFM4 10562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 53617269 53617269 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . OLFM4 NM_006418 exon4 c.G600A p.K200K AGAGAAGCTTGAG . 119.0 13.0 104.0 0.0 . 69 PCDH19 57526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 99662112 99662112 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PCDH19 NM_001184880 exon1 c.C1484T p.S495L ACCTGCGACGGCA . 101.0 47.0 94.0 0.0 . 110 PCLO 27445 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 82595462 82595462 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PCLO NM_014510 exon4 c.C3642T p.L1214L TTCAGGGAGTGGC . 843.0 325.0 785.0 2.0 . 29 PDE6B 5158 broad.mit.edu;bcgsc.ca 37 4 619437 619437 + Missense_Mutation SNP G G T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PDE6B NM_001145291 exon1 c.G22T p.A8S GAGCAGGCCCGGA . 104.0 9.0 134.0 0.0 . 90 PIK3R4 30849 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 130447469 130447469 + Missense_Mutation SNP C C G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PIK3R4 NM_014602 exon6 c.G1645C p.E549Q TATTTTCAGGGTC . 252.0 29.0 301.0 1.0 . 1471 PLCD4 84812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219501200 219501200 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PLCD4 NM_032726 exon16 c.G2189A p.R730H GTTACCGCCACAT . 112.0 31.0 117.0 0.0 . 661 PLEKHH1 57475 broad.mit.edu;mdanderson.org 37 14 68038988 68038988 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PLEKHH1 NM_020715 exon11 c.G1722A p.L574L GGGCCTGGGCGGG . 11.0 4.0 17.0 0.0 . 22 PLXND1 23129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 129286593 129286593 + Silent SNP C C A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PLXND1 NM_015103 exon21 c.G3921T p.T1307T CAGCAGCGTCTTC . 35.0 5.0 64.0 0.0 . 90 PRKAG2 51422 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 151262925 151262925 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PRKAG2 NM_016203 exon12 c.A1280G p.E427G CCAAGCTCATCCA . 411.0 150.0 375.0 2.0 . 658 PRPF8 10594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 1564062 1564062 + Missense_Mutation SNP C C A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PRPF8 NM_006445 exon29 c.G4568T p.R1523L CCTGATCGCTGAG . 128.0 22.0 112.0 0.0 . 525 PRR16 51334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 120021723 120021723 + Missense_Mutation SNP C C A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PRR16 NM_016644 exon3 c.C165A p.D55E AACGGACACGCTG . 97.0 24.0 71.0 0.0 . 71 PZP 5858 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 9344850 9344850 + Silent SNP G G T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . PZP NM_002864 exon13 c.C1485A p.I495I AGCCATGATCTGA . 90.0 7.0 77.0 0.0 . 157 RBFOX2 23543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 36164375 36164375 + Missense_Mutation SNP C C T rs199852787 alternate_allele TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . RBFOX2 NM_001082578 exon6 c.G685A p.E229K TATTCTCGAAAGT . 90.0 8.0 111.0 0.0 C|0.999;G|0.000 90 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237893654 237893654 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . RYR2 NM_001035 exon77 c.G10933A p.A3645T GATTTAGCAGTAT . 144.0 17.0 91.0 0.0 . 158 SACS 26278 broad.mit.edu;bcgsc.ca 37 13 23915816 23915816 + Silent SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . SACS NM_014363 exon10 c.T2199C p.T733T CAGCTGAGTACAT . 80.0 5.0 67.0 0.0 . 298 SALL1 6299 hgsc.bcm.edu;bcgsc.ca 37 16 51173341 51173341 + Missense_Mutation SNP G G T rs140924793 alternate_allele TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . SALL1 NM_002968 exon2 c.C2792A p.P931Q TTGGACGGGGACA . 125.0 5.0 122.0 0.0 G|1.000;A|0.000 98 SLX4 84464 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3634828 3634828 + Missense_Mutation SNP T T C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . SLX4 NM_032444 exon13 c.A4681G p.T1561A TCGGCGTTATGGG . 80.0 13.0 87.0 0.0 . 94 SNRPB 6628 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2443295 2443295 + Silent SNP G G C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . SNRPB NM_003091 exon6 c.C672G p.P224P CCCAGGGGGAGGA . 86.0 10.0 114.0 0.0 . 227 SSH3 54961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 67077797 67077797 + Missense_Mutation SNP G G T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . SSH3 NM_017857 exon13 c.G1670T p.S557I AGACCAGTGACAT . 74.0 15.0 80.0 0.0 . 91 TAS2R46 259292 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 11214459 11214459 + Missense_Mutation SNP A A C novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . TAS2R46 NM_176887 exon1 c.T435G p.F145L TATCACAAAAAGA . 275.0 13.0 256.0 0.0 . 1 TAS2R46 259292 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 11214707 11214707 + Missense_Mutation SNP C C A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . TAS2R46 NM_176887 exon1 c.G187T p.V63L TTAATACTAATAC . 280.0 20.0 236.0 0.0 . 1 TDRD12 91646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33233749 33233749 + Missense_Mutation SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . NM_001110822 exon4 c.A383G p.Y128C GCCTGTACTGCAC . 209.0 39.0 210.0 0.0 . . TRAPPC10 7109 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45506772 45506772 + Missense_Mutation SNP A A T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . TRAPPC10 NM_003274 exon16 c.A2470T p.S824C CAGCTTAGCAATG . 90.0 13.0 86.0 1.0 . 92 TRAPPC8 22878 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 29450417 29450417 + Missense_Mutation SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . TRAPPC8 NM_014939 exon16 c.T2306C p.L769P AACAAAAGTAGAA . 278.0 32.0 248.0 1.0 . 159 TTF2 8458 ucsc.edu;bcgsc.ca 37 1 117644071 117644071 + Silent SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . TTF2 NM_003594 exon23 c.A3414G p.K1138K GGCCAAACAAGTT . 33.0 4.0 24.0 0.0 . 91 UBR5 51366 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 103269936 103269936 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . UBR5 NM_015902 exon58 c.C8111T p.A2704V TTCTCAGCATTTT . 150.0 12.0 54.0 0.0 . 761 UGT8 7368 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 115597188 115597188 + Missense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . UGT8 NM_003360 exon5 c.C1370T p.A457V ATGGAGCCCATCA . 360.0 98.0 320.0 1.0 . 92 USP38 84640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 144107245 144107245 + Silent SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . USP38 NM_032557 exon1 c.G642A p.L214L ACTACTGCCTTCC . 126.0 33.0 124.0 0.0 . 660 USP5 8078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6974387 6974387 + Missense_Mutation SNP G G A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . USP5 NM_001098536 exon19 c.G2458A p.V820I CACTACGTCTGCC . 131.0 13.0 114.0 0.0 . 659 WFDC8 90199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 44181869 44181869 + Silent SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . WFDC8 NM_181510 exon5 c.G492A p.E164E TGGACACTCCTTA . 91.0 9.0 108.0 0.0 . 90 WHAMM 123720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 83491939 83491939 + Missense_Mutation SNP A A G novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . . NM_001080435 exon6 c.A1358G p.D453G AGGATGATAAGAA . 230.0 45.0 295.0 0.0 . . WRAP73 49856 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 3548777 3548777 + Missense_Mutation SNP C C T novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . WRAP73 NM_017818 exon10 c.G1048A p.D350N ACTGACCGTTCCT . 110.0 18.0 86.0 0.0 . 90 XRCC6 2547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42042966 42042966 + Silent SNP T T A novel TCGA-DD-A1E9-01A-21D-A152-10 TCGA-DD-A1E9-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 84a0bc36-9f29-4b23-aee1-bf5ff71f697b f37fe995-4af3-489f-988e-ca04430e4e57 . XRCC6 NM_001469 exon7 c.T840A p.A280A GAAGGCTCTCAAG . 153.0 47.0 137.0 0.0 . 661