Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6147641	6147641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ACSBG2	NM_030924	exon3	c.C252G	p.N84K	TTTCAACCAGTAC	.	111.0	24.0	99.0	0.0	.	23
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79058475	79058475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ADAMTS7	NM_014272	exon19	c.C3778A	p.L1260M	TCCACAGCTCCGC	.	35.0	23.0	42.0	0.0	.	226
ANKRD30A	91074	hgsc.bcm.edu;bcgsc.ca	37	10	37455583	37455583	+	Silent	SNP	G	G	T	rs75413857	bycluster;alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ANKRD30A	NM_052997	exon19	c.G1947T	p.A649A	GGCTGCGCATCAA	.	789.0	155.0	702.0	1.0	A|1.000;|0.000	161
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	69995875	69995875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ANO1	NM_018043	exon12	c.C1318T	p.L440F	TGGGACCTCACGG	.	108.0	50.0	136.0	0.0	.	47
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	21246408	21246408	+	Nonsense_Mutation	SNP	C	C	A	rs150005693	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	APOB	NM_000384	exon17	c.G2593T	p.E865X	CTACTTCCAGTTT	.	101.0	64.0	76.0	0.0	C|1.000;T|0.000	175
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93755396	93755396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ARL13B	NM_182896	exon5	c.G487A	p.E163K	TTTTAGGAACCAT	.	361.0	37.0	282.0	0.0	.	91
ASNS	440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97486092	97486092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ASNS	NM_133436	exon8	c.C940G	p.L314V	TAAAAAGGACTTC	.	302.0	87.0	309.0	1.0	.	91
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154320946	154320946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ATP8B2	NM_020452	exon27	c.G3325A	p.V1109I	ACAGTCGTCTGCA	.	113.0	94.0	75.0	0.0	.	92
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143623348	143623348	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	BAI1	NM_001702	exon27	c.C3753T	p.G1251G	CACGGGCACACTG	.	49.0	14.0	37.0	0.0	.	1129
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103518669	103518669	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001204425	exon18	c.C3619G	p.Q1207E	AAAGCTCAAAAAC	.	675.0	128.0	271.0	0.0	.	.
BPIFA2	140683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31768351	31768351	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_080574	exon8	c.G735T	p.L245L	CCAGCTGCAAACC	.	119.0	30.0	116.0	0.0	.	.
C11orf82	220042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82644353	82644353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C11orf82	NM_145018	exon6	c.A1973G	p.N658S	ATATCAATAACAA	.	82.0	18.0	78.0	0.0	.	70
C18orf25	147339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	43796312	43796312	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C18orf25	NM_145055	exon2	c.A466T	p.K156X	GCCAAGAAAAACC	.	141.0	57.0	129.0	0.0	.	515
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162344018	162344018	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C1orf111	NM_182581	exon3	c.C606A	p.I202I	CCTCTTGATGTGG	.	122.0	42.0	89.0	0.0	.	69
C2CD2L	9854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118986773	118986773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C2CD2L	NM_014807	exon14	c.G1931T	p.G644V	GCAGCGGCACTAA	.	29.0	9.0	34.0	0.0	.	68
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118980899	118980899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C2CD2L	NM_014807	exon2	c.A440G	p.E147G	AATCTGAGCATAC	.	75.0	35.0	103.0	0.0	.	68
CALB1	793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	91094853	91094853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CALB1	NM_004929	exon1	c.73delG	p.A25fs	CGTCAGCGTCGAA	.	156.0	62.0	84.0	0.0	.	91
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112326103	112326103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCDC80	NM_199511	exon7	c.G2426A	p.G809D	CGCAGACCTGAGA	.	129.0	19.0	85.0	0.0	.	92
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167549831	167549831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCR6	NM_004367	exon3	c.T113C	p.L38S	GCTCCTTGCAGGA	.	66.0	48.0	87.0	0.0	.	227
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45153829	45153829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CDCP1	NM_178181	exon3	c.G401T	p.S134I	CCGATGCTCTTAT	.	163.0	96.0	140.0	0.0	.	117
CDK2	1017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56365394	56365394	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CDK2	NM_001798	exon7	c.C882G	p.P294P	AGTACCCCATCTT	.	91.0	31.0	116.0	0.0	.	1511
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	46930838	46930838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CELSR1	NM_014246	exon1	c.A2230G	p.I744V	GGGTGATGAGGCC	.	37.0	12.0	39.0	0.0	.	525
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220404347	220404347	+	Missense_Mutation	SNP	C	C	T	rs142415191	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CHPF	NM_024536	exon4	c.G2086A	p.E696K	CTTGTTCTGAGGC	.	171.0	54.0	192.0	0.0	C|0.999;G|0.000;T|0.000	90
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40351330	40351330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CHRNA9	NM_017581	exon4	c.G797T	p.G266V	CCTCCGGAGAAAA	.	252.0	138.0	208.0	0.0	.	96
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013401	99013401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CNGA3	NM_001298	exon8	c.G1768A	p.E590K	CTCACCGAGTACC	.	53.0	17.0	57.0	0.0	.	96
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130103715	130103715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_153264	exon5	c.C1369A	p.Q457K	GAGAAACAGTTTG	.	131.0	69.0	100.0	0.0	.	.
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130103724	130103724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_153264	exon5	c.C1378G	p.Q460E	TTTGAGCAAATCA	.	134.0	67.0	103.0	0.0	.	.
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68334896	68334896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CPA6	NM_020361	exon11	c.C1157A	p.A386D	TTGTAGGCCCAAT	.	165.0	21.0	121.0	0.0	.	92
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	43884410	43884410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CRHR1	NM_001145148	exon2	c.C68T	p.A23V	TCTCTGCCTCCCT	.	58.0	27.0	40.0	0.0	.	522
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3141773	3141773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CSMD1	NM_033225	exon26	c.G4046A	p.S1349N	GAGCCACTCCACT	.	38.0	23.0	140.0	0.0	.	86
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23546707	23546707	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CST9L	NM_080610	exon2	c.A258G	p.V86V	TGAGAATACAGTC	.	83.0	38.0	123.0	0.0	.	90
DAAM2	23500	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39864686	39864686	+	Missense_Mutation	SNP	C	C	A	rs146966805	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DAAM2	NM_015345	exon20	c.C2440A	p.R814S	GGGCAGCGTGGGG	.	89.0	42.0	63.0	0.0	C|0.999;T|0.001	228
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124354994	124354994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DNAH10	NM_207437	exon43	c.A7247T	p.Y2416F	CAGAGTATATTCA	.	64.0	15.0	65.0	0.0	.	95
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169081429	169081429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DOCK2	NM_004946	exon2	c.C66A	p.S22R	AGGCAGCGGAGCC	.	50.0	16.0	51.0	0.0	.	97
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66259030	66259030	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DPP3	NM_130443	exon8	c.C864A	p.G288G	CCAGGGCTCCATC	.	53.0	22.0	47.0	0.0	.	46
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27156187	27156187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DPYSL5	NM_001253724	exon7	c.C776G	p.A259G	TCGCAGCTGCTAA	.	129.0	65.0	99.0	0.0	.	92
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184295208	184295208	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EPHB3	NM_004443	exon6	c.C1432A	p.R478R	CCAGAGCGGCCCA	.	377.0	201.0	380.0	0.0	.	1455
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	43543304	43543304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EPSTI1	NM_001002264	exon3	c.A257T	p.Q86L	AGCTCCTGCTCCG	.	25.0	18.0	65.0	0.0	.	91
ERBB2IP	55914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65371047	65371047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ERBB2IP	NM_001253699	exon23	c.G3973T	p.A1325S	GAACTGGCAAAAC	.	323.0	155.0	294.0	0.0	.	653
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	6248626	6248626	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	F13A1	NM_000129	exon6	c.C717A	p.C239X	ATACAGGCAAGTG	.	60.0	24.0	35.0	0.0	.	519
FAR1	84188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13750208	13750208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAR1	NM_032228	exon12	c.T1435C	p.W479R	CTCATCTGGCGCA	.	53.0	18.0	43.0	0.0	.	92
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92577146	92577146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAT3	NM_001008781	exon18	c.G10613A	p.R3538H	ACATCCGCGTGCG	.	90.0	40.0	121.0	0.0	.	73
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55396884	55396884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FCAR	NM_133279	exon3	c.G308A	p.R103K	AATATAGGATAGG	.	86.0	31.0	83.0	0.0	.	92
FEZ2	9637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36808548	36808548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FEZ2	NM_001042548	exon4	c.G519A	p.M173I	TTCCTGCATCATT	.	175.0	16.0	146.0	0.0	.	23
FLG	2312	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152277615	152277615	+	Missense_Mutation	SNP	G	G	T	rs146017726	byfrequency;alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FLG	NM_002016	exon3	c.C9747A	p.H3249Q	GGAGCCGTGCCTT	.	160.0	52.0	97.0	0.0	G|0.997;A|0.003	106
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262451	39262451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FREM2	NM_207361	exon1	c.G970A	p.A324T	TTCGTGGCCATGA	.	129.0	95.0	144.0	0.0	.	100
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57428698	57428698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GNAS	NM_001077490	exon1	c.G191T	p.G64V	CAGTGGGGTCCAT	.	46.0	27.0	61.0	0.0	.	4767
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810405	106810405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GUCY1A2	NM_000855	exon4	c.C987G	p.F329L	CAAGTGGAAAGGG	.	150.0	55.0	163.0	0.0	.	589
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484630	43484630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HECW1	NM_015052	exon11	c.C1859A	p.P620H	AAGAGCCCGAGGG	.	31.0	11.0	34.0	0.0	.	669
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28377352	28377352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HERC2	NM_004667	exon81	c.C12464T	p.A4155V	GTCTGGGCATCTC	.	159.0	66.0	225.0	0.0	.	234
HHIP	64399	broad.mit.edu;bcgsc.ca	37	4	145627786	145627786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HHIP	NM_022475	exon5	c.T935C	p.I312T	GGGCTATCGGGCC	.	124.0	9.0	207.0	0.0	.	283
HID1	283987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72959876	72959876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_030630	exon3	c.G346T	p.G116C	AGAAGCCCCTCCA	.	87.0	28.0	79.0	0.0	.	.
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60324102	60324102	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HOOK1	NM_015888	exon13	c.A1245G	p.R415R	TCAGAGACTAATT	.	206.0	167.0	251.0	0.0	.	154
HPS6	79803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103827340	103827340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HPS6	NM_024747	exon1	c.G2109T	p.E703D	AGCTGAGCTCCTG	.	44.0	22.0	33.0	0.0	.	90
IER2	9592	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13264628	13264628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	IER2	NM_004907	exon2	c.G628T	p.D210Y	CCGGCGGACAGCA	.	10.0	4.0	19.0	0.0	.	537
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77692543	77692543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	INTS4	NM_033547	exon3	c.G326A	p.C109Y	ATAATGCAGTCTG	.	58.0	24.0	56.0	0.0	.	92
ITGA2B	3674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42453683	42453683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ITGA2B	NM_000419	exon23	c.C2341G	p.L781V	CTCGCAGCTCCAC	.	91.0	42.0	77.0	0.0	.	228
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17942056	17942056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	JAK3	NM_000215	exon21	c.G2959A	p.G987S	TCTGGCCTGGCTC	.	50.0	25.0	61.0	0.0	.	2418
KDM3B	51780	broad.mit.edu;bcgsc.ca	37	5	137754700	137754700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KDM3B	NM_016604	exon14	c.G3494C	p.G1165A	GTGGAGGAGGACC	.	333.0	15.0	266.0	1.0	.	542
KDM3B	51780	broad.mit.edu;bcgsc.ca	37	5	137766109	137766109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KDM3B	NM_016604	exon22	c.C5065T	p.H1689Y	GCCCCACACCAGG	.	136.0	11.0	125.0	1.0	.	542
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6511774	6511774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KIAA0753	NM_014804	exon10	c.C1723G	p.L575V	CCTTTAGCCATGC	.	65.0	48.0	79.0	0.0	.	90
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90190176	90190176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KIF7	NM_198525	exon7	c.C1673A	p.S558Y	ACAAAGGACCCGG	.	43.0	26.0	81.0	0.0	.	523
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	126062613	126062613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KLF15	NM_014079	exon3	c.A1208T	p.H403L	AAGCGGTGCACCT	.	210.0	52.0	261.0	0.0	.	91
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123070262	123070262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KNTC1	NM_014708	exon37	c.A3614T	p.E1205V	TTCTTGAGTCACA	.	63.0	29.0	66.0	0.0	.	543
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152733416	152733416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KPRP	NM_001025231	exon2	c.G1352T	p.R451L	TTCCTCGCCCAGG	.	52.0	48.0	32.0	0.0	.	95
KREMEN1	83999	broad.mit.edu;bcgsc.ca	37	22	29490382	29490382	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KREMEN1	NM_001039570	exon2	c.G234C	p.G78G	GGAGGGGGGCCTG	.	121.0	8.0	98.0	0.0	.	659
LACE1	246269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108645051	108645051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LACE1	NM_145315	exon2	c.G162T	p.E54D	ATCCGAGAGCATG	.	83.0	71.0	70.0	0.0	.	90
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21422647	21422647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LAMA3	NM_001127717	exon29	c.A3536T	p.E1179V	AGATTGAGTTTGA	.	183.0	75.0	132.0	0.0	.	100
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35624619	35624619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LGI4	NM_139284	exon3	c.G292T	p.G98C	ACAGGCCCGCAAA	.	58.0	28.0	39.0	0.0	.	91
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	197687166	197687166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LMLN	NM_001136049	exon1	c.G74T	p.G25V	GCCCGGGCCGGAG	.	114.0	33.0	92.0	0.0	.	91
LOC653486	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	194445	194445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001097610	exon3	c.G283A	p.A95T	GACGGTGCCTAAG	.	58.0	21.0	73.0	0.0	.	.
LRRC18	474354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50121829	50121829	+	Silent	SNP	G	G	A	rs144747704	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LRRC18	NM_001006939	exon1	c.C372T	p.R124R	CACAGCGCGGATG	.	93.0	30.0	83.0	1.0	G|0.999;A|0.001	92
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969693	43969693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LYPD3	NM_014400	exon1	c.G31T	p.A11S	TCATGGCCTGGGC	.	37.0	15.0	41.0	1.0	.	91
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72723140	72723140	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MAMDC2	NM_153267	exon3	c.T162C	p.Y54Y	CATTTATGTGGAT	.	56.0	29.0	45.0	0.0	.	91
MAP3K19	80122	broad.mit.edu;ucsc.edu	37	2	135757514	135757514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_025052	exon4	c.G307T	p.E103X	TCTTTTCTTTTAA	.	47.0	5.0	59.0	1.0	.	.
MAP3K3	4215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61768464	61768464	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MAP3K3	NM_203351	exon14	c.G1308A	p.E436E	CTAGGAGGTGAGT	.	33.0	14.0	50.0	0.0	.	979
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6302684	6302684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MCPH1	NM_001172574	exon8	c.A1441G	p.I481V	AAAACCATCTCCA	.	49.0	22.0	111.0	0.0	.	229
MEOX1	4222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41738808	41738808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MEOX1	NM_004527	exon1	c.C95T	p.A32V	CCTGAGGCCCCAT	.	144.0	59.0	96.0	0.0	.	90
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1017131	1017131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MUC6	NM_005961	exon31	c.C5670A	p.H1890Q	GGCTGTGTGGGTG	.	126.0	21.0	139.0	0.0	.	23
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108203979	108203979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYH15	NM_014981	exon12	c.A1133G	p.Q378R	GGTTTCTGTTTAA	.	70.0	29.0	65.0	0.0	.	73
MYLIP	29116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	16145305	16145305	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYLIP	NM_013262	exon6	c.T1005A	p.V335V	TGGCGTTGTGGAC	.	213.0	97.0	141.0	0.0	.	91
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26164107	26164107	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYO18B	NM_032608	exon4	c.C224G	p.P75R	GCCAACCCAACAG	.	266.0	71.0	266.0	0.0	.	142
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171092541	171092541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYO3B	NM_001083615	exon7	c.C644A	p.A215D	ATGACGCTCGCTG	.	78.0	17.0	77.0	0.0	.	530
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47043973	47043973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NBEAL2	NM_015175	exon32	c.G5264T	p.R1755L	AGCGGCGCCAGTG	.	46.0	27.0	56.0	0.0	.	69
NCAPG2	54892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158437057	158437057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NCAPG2	NM_017760	exon27	c.A3304G	p.R1102G	CCTCCCTCACTTT	.	60.0	12.0	72.0	0.0	.	272
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71087033	71087033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NCOA2	NM_006540	exon5	c.G321T	p.Q107H	GACACCCTGCCCT	.	99.0	23.0	63.0	0.0	.	639
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156890181	156890181	+	Missense_Mutation	SNP	C	C	A	rs200083422		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NIPAL4	NM_001099287	exon2	c.C303A	p.S101R	GCCCAGCAATGCC	.	99.0	28.0	120.0	0.0	C|0.999;A|0.001	68
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	31523091	31523097	+	Frame_Shift_Del	DEL	CCAAGAT	CCAAGAT	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	CCAAGAT	CCAAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NOL4	NM_003787	exon9	c.1474_1480del	p.492_494del	CTGAAGCCAAGAT	.	115.0	0.0	108.0	0.0	.	93
NXPE2	120406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114569227	114569227	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_182495	exon3	c.A593C	p.E198A	CCAGTGAAGGGGT	.	115.0	34.0	150.0	0.0	.	.
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517456	158517456	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	OR6Y1	NM_001005189	exon1	c.G440C	p.G147A	AGTGTGCCACAGA	.	91.0	83.0	72.0	0.0	.	69
ORC3	23595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88374575	88374575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ORC3	NM_181837	exon18	c.G1951C	p.E651Q	TGGTCAGAGGTAG	.	119.0	94.0	97.0	0.0	.	206
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140180920	140180920	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHA3	NM_031497	exon1	c.C138A	p.G46G	CGTGGGCCGCATC	.	51.0	16.0	57.0	0.0	.	98
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222940	140222940	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHA8	NM_031856	exon1	c.G2034A	p.A678A	AAAAGCGTCATCG	.	95.0	55.0	83.0	0.0	.	92
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140573693	140573693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHB10	NM_018930	exon1	c.C1568A	p.A523D	ACGAGGCCCTGCA	.	62.0	21.0	53.0	0.0	.	92
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140562729	140562730	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHB16	NM_020957	exon1	c.595_596insA	p.E199fs	GATAAAGAGCTGG	.	76.0	27.0	69.0	0.0	.	92
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56140768	56140769	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCK1	NM_002591	exon10	c.1777_1778del	p.593_593del	GACATCGAGAAGT	.	144.0	0.0	151.0	0.0	.	227
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82546021	82546021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon7	c.A11281C	p.K3761Q	GAATCTTGGCTCG	.	99.0	32.0	118.0	1.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82583500	82583500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon5	c.G6769T	p.A2257S	CACTAGCTCTACC	.	48.0	16.0	56.0	0.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764880	82764880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon3	c.G1986T	p.K662N	TGCAGTCTTCAGT	.	58.0	27.0	96.0	0.0	.	29
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17240976	17240976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCSK2	NM_002594	exon2	c.A269G	p.E90G	AGCTGGAGAGAGA	.	107.0	59.0	121.0	0.0	.	157
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55156636	55156636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PDGFRA	NM_006206	exon22	c.A3037G	p.S1013G	AGACTGAGCGCTG	.	186.0	24.0	126.0	0.0	.	9497
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	609135	609135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PHRF1	NM_020901	exon14	c.C3676G	p.H1226D	GAAGCACATGTCT	.	28.0	9.0	24.0	0.0	.	22
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	94316706	94316706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PIWIL4	NM_152431	exon5	c.C606A	p.C202X	CGTGTGCATCCAG	.	110.0	46.0	138.0	0.0	.	91
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63042384	63042384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PPM1H	NM_020700	exon10	c.G1430T	p.R477L	CGGGCACGCATCA	.	55.0	27.0	53.0	0.0	.	637
PRB2	653247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11546698	11546698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRB2	NM_006248	exon3	c.G314T	p.G105V	TTGTCTCCTTGTG	.	121.0	56.0	129.0	0.0	.	22
PRODH2	58510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36297613	36297613	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRODH2	NM_021232	exon7	c.G1026T	p.G342G	CCAGGGCCCGCCT	.	51.0	27.0	56.0	0.0	.	92
PRSS58	136541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141955440	141955440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRSS58	NM_001001317	exon3	c.G94T	p.V32F	AATAGACCAAGTA	.	133.0	58.0	163.0	0.0	.	24
PTPN5	84867	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18754797	18754797	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPN5	NM_032781	exon11	c.C1203A	p.I401I	CTCCTCGATGTTG	.	32.0	16.0	48.0	0.0	.	229
PTPRS	5802	broad.mit.edu;mdanderson.org	37	19	5223017	5223017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPRS	NM_002850	exon18	c.G2786A	p.R929H	TGGCCACGGGGCG	.	21.0	11.0	20.0	0.0	.	357
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121652602	121652602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPRZ1	NM_002851	exon12	c.T3502A	p.L1168I	CAGCTCTTATTTT	.	45.0	18.0	102.0	0.0	.	699
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220406172	220406172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RAB3GAP2	NM_012414	exon2	c.G149T	p.G50V	CATGCTCCCCAAC	.	213.0	178.0	111.0	0.0	.	90
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17697493	17697493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RAI1	NM_030665	exon3	c.G1231T	p.A411S	ACCCAGGCTGGCA	.	58.0	36.0	105.0	0.0	.	91
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	49039196	49039228	+	In_Frame_Del	DEL	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RB1	NM_000321	exon22	c.2274_2306del	p.758_769del	TAACTCGGTCTTC	.	51.0	17.0	164.0	0.0	.	3784
RHPN1	114822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144462150	144462150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RHPN1	NM_052924	exon9	c.G1097A	p.G366D	GCGACGGCTCCCG	.	37.0	8.0	44.0	0.0	.	67
RNF135	84282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29325932	29325932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RNF135	NM_032322	exon5	c.G1022T	p.G341V	TCCTGGGAAGGAC	.	147.0	70.0	108.0	0.0	.	227
RUSC1	23623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155292170	155292170	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RUSC1	NM_001105203	exon2	c.G606A	p.R202R	CGAGAGGGCGGAG	.	363.0	310.0	228.0	0.0	.	92
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	39001380	39001380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR1	NM_001042723	exon60	c.C9081A	p.S3027R	GGGCAGCGGTGGC	.	91.0	42.0	95.0	0.0	.	100
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39001379	39001379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR1	NM_001042723	exon60	c.G9080T	p.S3027I	TGGGCAGCGGTGG	.	91.0	41.0	94.0	0.0	.	100
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	33954429	33954429	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR3	NM_001243996	exon35	c.C4698T	p.S1566S	CTACAGCGCGGTG	.	37.0	4.0	52.0	0.0	.	520
SERPINF2	5345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	1657772	1657772	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SERPINF2	NM_000934	exon10	c.T1420C	p.L474L	CCTGACTTAAAAC	.	46.0	35.0	37.0	0.0	.	226
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47155493	47155493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SETD2	NM_014159	exon5	c.T4588A	p.S1530T	GAGAAGAACTGAA	.	166.0	12.0	116.0	0.0	.	1273
SH3RF3	344558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109964184	109964184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SH3RF3	NM_001099289	exon2	c.C628A	p.P210T	AAGGAACCTGGTG	.	90.0	9.0	153.0	0.0	.	24
SIGLEC15	284266	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	43418741	43418741	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SIGLEC15	NM_213602	exon4	c.G555T	p.A185A	CCGCGCGCTCTGC	.	14.0	7.0	13.0	0.0	.	90
SLC17A1	6568	hgsc.bcm.edu;bcgsc.ca	37	6	25811666	25811666	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.T1138C	p.L380L	CACCCAAGCAAAA	.	395.0	26.0	250.0	0.0	.	94
SLC17A1	6568	hgsc.bcm.edu;bcgsc.ca	37	6	25811734	25811734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.A1070G	p.Y357C	CTCAGGTAAGGCA	.	278.0	38.0	185.0	0.0	.	94
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44198616	44198616	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC29A1	NM_004955	exon8	c.C756T	p.L252L	GGACCTCATTAGC	.	94.0	53.0	75.0	0.0	.	154
SLC2A11	66035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24224833	24224833	+	Silent	SNP	G	G	T	rs199527068	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC2A11	NM_030807	exon8	c.G894T	p.S298S	TGACTCGGTGAGA	.	47.0	27.0	32.0	1.0	G|0.999;A|0.000	91
SLC35A5	55032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112300032	112300032	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC35A5	NM_017945	exon6	c.C1068T	p.S356S	GCCCTCCCTGGAA	.	136.0	44.0	118.0	0.0	.	91
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162719562	162719562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC4A10	NM_001178016	exon7	c.G789T	p.M263I	TTCCATGGACAAA	.	110.0	92.0	136.0	0.0	.	229
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51890828	51890828	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC4A8	NM_001039960	exon22	c.C3001G	p.L1001V	CGAGAGCTGAGCT	.	171.0	16.0	178.0	0.0	.	95
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1406399	1406399	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC6A3	NM_001044	exon12	c.T1503A	p.V501V	CTGCCCAACACCT	.	86.0	27.0	87.0	0.0	.	157
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	475176	475176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC9A3	NM_004174	exon16	c.C2323A	p.L775M	GAGACAGCCAGGG	.	93.0	44.0	107.0	0.0	.	90
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1241790	1241790	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SNTG2	NM_018968	exon10	c.849+1G>A	.	CAGAACGTGAGCA	.	51.0	15.0	44.0	0.0	.	136
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7705958	7705958	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SORCS2	NM_020777	exon14	c.G1815T	p.S605S	CACCTCGGTGTTT	.	85.0	24.0	60.0	0.0	.	91
SPOCD1	90853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32256443	32256443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SPOCD1	NM_144569	exon16	c.C3412T	p.H1138Y	GGAAGTGCTGGCC	.	66.0	49.0	76.0	0.0	.	158
SSPO	23145	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149523554	149523554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_198455	exon102	c.A14465G	p.Q4822R	CTGGCCAGGTGCT	.	21.0	10.0	20.0	0.0	.	.
TAS1R1	80835	broad.mit.edu;mdanderson.org	37	1	6635435	6635435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TAS1R1	NM_138697	exon3	c.C1243T	p.R415X	AGGGGCCGAGTCT	.	44.0	32.0	62.0	1.0	.	516
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77922702	77922702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TBC1D16	NM_019020	exon8	c.G1510T	p.G504W	CTTCCCCCCGGAA	.	105.0	16.0	70.0	0.0	.	90
TBX5	6910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	114823367	114823367	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TBX5	NM_000192	exon7	c.G669T	p.T223T	TAATTGCGTGATC	.	70.0	17.0	88.0	0.0	.	98
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133899348	133899348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TG	NM_003235	exon9	c.C1731A	p.F577L	AGAATTCCTTCTC	.	246.0	63.0	152.0	0.0	.	145
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128899810	128899810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TMEM132C	NM_001136103	exon2	c.G619C	p.A207P	TTCAGTGCCCCGA	.	95.0	52.0	108.0	0.0	.	68
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19687499	19687499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TMPRSS15	NM_002772	exon17	c.C1996G	p.L666V	AGTGCAGATGACC	.	87.0	38.0	79.0	0.0	.	160
TP53	7157	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	7578188	7578188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	TP53,NS,carcinoma,+2	TP53	NM_000546	exon6	c.G661T	p.E221X	GCGGCTCATAGGG	.	89.0	64.0	103.0	0.0	.	70225
TRAPPC10	7109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45504036	45504036	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TRAPPC10	NM_003274	exon15	c.C2272T	p.L758L	AGGCAGCTGTGCG	.	68.0	20.0	45.0	0.0	.	92
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135561777	135561777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_020389	exon9	c.A2207T	p.K736M	TTGGCCTTAGATT	.	148.0	50.0	122.0	0.0	.	.
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73151774	73151774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TRPM3	NM_001007471	exon25	c.A4219G	p.M1407V	CATCCATAGCAGA	.	125.0	50.0	146.0	0.0	.	521
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150127752	150127752	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TSC22D2	NM_014779	exon1	c.C615T	p.S205S	ACACAGCAGTACT	.	111.0	26.0	101.0	0.0	.	91
TTLL9	164395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	30522615	30522615	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TTLL9	NM_001008409	exon12	c.C928T	p.Q310X	AGTGTGCAGAAGG	.	97.0	24.0	104.0	0.0	.	92
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47065468	47065468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UBA1	NM_153280	exon15	c.A1697G	p.Q566R	TTTTCCAAAACCT	.	103.0	72.0	121.0	0.0	.	227
UTS2R	2837	bcgsc.ca;mdanderson.org	37	17	80333246	80333246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UTS2R	NM_018949	exon1	c.C1046A	p.A349D	CCCGCGCCCGCTT	.	25.0	13.0	52.0	2.0	.	153
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816787	82816787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	VCAN	NM_004385	exon7	c.T2662A	p.S888T	ACTACATCAACTG	.	114.0	52.0	84.0	0.0	.	238
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167277885	167277885	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	WDR49	NM_178824	exon5	c.G618A	p.R206R	CAAAAGCCGAGTC	.	138.0	35.0	94.0	0.0	.	155
WDR76	79968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44158353	44158353	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	WDR76	NM_024908	exon13	c.G1644T	p.L548L	ATGGCTGACCAGG	.	94.0	39.0	87.0	0.0	.	90
XPNPEP2	7512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128893170	128893170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	XPNPEP2	NM_003399	exon15	c.A1382T	p.D461V	CCACAGACATCAC	.	59.0	51.0	65.0	1.0	.	130
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100361473	100361473	+	RNA	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZAN	.	.	.	.	ATTCATCTCTGCA	.	60.0	22.0	49.0	0.0	.	142
ZFYVE28	57732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2273119	2273119	+	Silent	SNP	G	G	A	rs146945400		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZFYVE28	NM_020972	exon12	c.C2451T	p.D817D	GGCCTCGTCTGGC	.	120.0	29.0	93.0	0.0	G|1.000;A|0.000	93
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58574854	58574854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF135	NM_007134	exon3	c.G237T	p.E79D	GCTGGAGCAAGAG	.	112.0	51.0	100.0	0.0	.	91
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6964783	6964783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF215	NM_013250	exon6	c.T623A	p.L208Q	CACATCTACTTTC	.	104.0	46.0	145.0	0.0	.	514
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11834023	11834023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF823	NM_001080493	exon4	c.G326C	p.G109A	GAATGACCCAAGA	.	103.0	21.0	107.0	0.0	.	24
ZNF830	91603	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	33288615	33288615	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF830	NM_052857	exon1	c.G30T	p.P10P	GACTCCGGCAGGG	.	121.0	53.0	85.0	1.0	.	89
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21132144	21132144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF85	NM_001256171	exon5	c.C914A	p.T305N	TTACTACCCATAA	.	49.0	10.0	73.0	0.0	.	514
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	22575415	22575415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF98	NM_001098626	exon4	c.A622G	p.K208E	AGGGTTTCTCTCC	.	307.0	152.0	305.0	0.0	.	24
ZNF99	7652	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	22941607	22941607	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF99	NM_001080409	exon4	c.C1104T	p.P368P	TTTGTAGGGTTTC	.	35.0	10.0	45.0	1.0	.	24