Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132378583	132378583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ACAD11	NM_032169	exon1	c.G13T	p.A5S	CAGTAGCACCTGG	.	72.0	34.0	125.0	0.0	.	91
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	28217002	28217002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ADAMTS1	NM_006988	exon1	c.C272A	p.P91H	CTGTCGGGCCGCA	.	56.0	15.0	82.0	0.0	.	272
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116061116	116061116	+	Silent	SNP	A	A	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	AFAP1L2	NM_032550	exon13	c.T1539G	p.A513A	TACCGCAGCTGTG	.	34.0	27.0	74.0	0.0	.	136
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74272392	74272393	+	Frame_Shift_Ins	INS	-	-	ATCA	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ALB	NM_000477	exon3	c.184_185insATCA	p.D62fs	TTTGAAGATCATG	.	44.0	29.0	71.0	0.0	.	96
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96798324	96798324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ASTL	NM_001002036	exon6	c.G592T	p.D198Y	CCCGGTCGGCCCG	.	212.0	101.0	267.0	0.0	.	90
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17331929	17331929	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ATP13A2	NM_001141973	exon3	c.G228T	p.R76R	CCGGAGCCGCAGC	.	199.0	35.0	235.0	0.0	.	93
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	16327490	16327490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ATXN1	NM_001128164	exon7	c.C1052T	p.S351L	GGAACCGACTTGC	.	92.0	8.0	97.0	0.0	.	93
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	348096	348097	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	AXIN1	NM_003502	exon6	c.1410_1411insT	p.I470fs	GTCCAGGATGCTC	.	21.0	14.0	67.0	0.0	.	684
AZIN1	51582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103842142	103842142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	AZIN1	NM_015878	exon11	c.A927T	p.E309D	GGCTGGTTCATCA	.	129.0	88.0	94.0	0.0	.	90
BRSK2	9024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1466647	1466647	+	Missense_Mutation	SNP	C	C	A	rs199880359	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	BRSK2	NM_001256630	exon10	c.C1074A	p.F358L	CTGCTTCCGAGAC	.	55.0	28.0	127.0	2.0	C|0.999;T|0.001	333
C7orf25	79020	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42949411	42949411	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	C7orf25	NM_001099858	exon2	c.G1263A	p.G421G	TCCCGTCCCAAAA	.	134.0	81.0	126.0	0.0	.	69
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122303420	122303420	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CADPS2	NM_001167940	exon3	c.A657G	p.K219K	TGGCTGTTTGCAC	.	98.0	61.0	90.0	0.0	.	94
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	12858286	12858286	+	Silent	SNP	G	G	A	rs199768578		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CAMK1D	NM_153498	exon8	c.G792A	p.P264P	GGACCCGAATAAA	.	231.0	22.0	378.0	0.0	G|0.999;A|0.000	334
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49089809	49089809	+	Missense_Mutation	SNP	C	C	A	rs35965578	byfrequency;alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CCNT1	NM_001240	exon7	c.G679T	p.A227S	CAGTGGCGTCAAC	.	94.0	24.0	125.0	0.0	C|0.500;G|0.500	418
CDC42EP1	11135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37964608	37964608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CDC42EP1	NM_152243	exon3	c.G957T	p.R319S	CGGCAGGCACTGG	.	71.0	27.0	132.0	0.0	.	90
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73765630	73765630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CHST3	NM_004273	exon2	c.C30A	p.D10E	CCAGGACTGCCGG	.	62.0	47.0	95.0	0.0	.	90
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103478004	103478004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	COL11A1	NM_080629	exon14	c.G1630C	p.G544R	TTGGGCCAGGTGG	.	204.0	148.0	139.0	0.0	.	586
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	101798606	101798607	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	COL15A1	NM_001855	exon21	c.2337_2338insT	p.G779fs	AAGGGGGATGGAT	.	49.0	11.0	96.0	0.0	.	96
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	43861914	43861914	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CRHR1	NM_001145148	exon1	c.G4T	p.G2X	AGGATGGGAGGGC	.	31.0	15.0	74.0	0.0	.	522
CRHR2	1395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30721587	30721587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CRHR2	NM_001202475	exon3	c.C254A	p.A85D	ACGAGGGCTCCGG	.	56.0	10.0	102.0	0.0	.	524
CTLA4	1493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204732726	204732726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CTLA4	NM_005214	exon1	c.C61A	p.P21T	ACCTGGCCCTGCA	.	91.0	38.0	113.0	0.0	.	90
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117351762	117351762	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CTTNBP2	NM_033427	exon23	c.A4821T	p.S1607S	AACTCTTGAAACA	.	42.0	23.0	40.0	0.0	.	94
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50923774	50923774	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DCC	NM_005215	exon18	c.A2785T	p.S929C	AGGTCCAGTACTT	.	73.0	20.0	87.0	0.0	.	225
DDI1	414301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103908038	103908038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DDI1	NM_001001711	exon1	c.G488A	p.R163H	AGGAACGCAACCC	.	47.0	11.0	78.0	0.0	.	137
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169305825	169305825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DDX60L	NM_001012967	exon30	c.C4054G	p.L1352V	GGACCAGGGTTAT	.	354.0	173.0	328.0	0.0	.	69
DIP2A	23181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47952072	47952072	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DIP2A	NM_206891	exon10	c.G1227T	p.V409V	CCCTGTGATGTTC	.	124.0	76.0	153.0	0.0	.	24
DOCK2	1794	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169230139	169230139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DOCK2	NM_004946	exon26	c.C2632A	p.Q878K	CAACACCAGGTCC	.	134.0	60.0	198.0	1.0	.	97
EFEMP1	2202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56144961	56144961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	EFEMP1	NM_001039349	exon4	c.T356C	p.V119A	CTGGCCACAAAAC	.	76.0	35.0	75.0	0.0	.	520
EIF2AK2	5610	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37349804	37349804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	EIF2AK2	NM_001135651	exon12	c.G912T	p.K304N	CTCCGCCTTCCTA	.	109.0	59.0	147.0	1.0	.	794
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	55717878	55717878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ERC2	NM_015576	exon16	c.G2851C	p.E951Q	TGCCCTCCTCGTC	.	87.0	27.0	153.0	0.0	.	24
FAM105A	54491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14601219	14601219	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FAM105A	NM_019018	exon2	c.G210T	p.G70G	TTCAGGGCACAAG	.	56.0	24.0	63.0	0.0	.	91
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92577730	92577730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FAT3	NM_001008781	exon18	c.A11197G	p.M3733V	AATATCATGCGCA	.	157.0	71.0	234.0	0.0	.	73
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48829964	48829964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FBN1	NM_000138	exon7	c.A580T	p.M194L	GGCACATCTGGTT	.	72.0	20.0	71.0	0.0	.	92
FBXO31	79791	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87364936	87364936	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FBXO31	NM_024735	exon9	c.C1578T	p.A526A	ATCGAAGGCCTGT	.	62.0	48.0	158.0	2.0	.	226
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155505651	155505651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FGA	NM_000508	exon6	c.C2226G	p.F742L	TACCCGGAAGTGA	.	112.0	82.0	162.0	0.0	.	93
GCKR	2646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27741789	27741789	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GCKR	NM_001486	exon17	c.G1557T	p.A519A	GCGGGCGCTGGCC	.	62.0	21.0	85.0	0.0	.	92
GPR124	25960	broad.mit.edu;bcgsc.ca	37	8	37693183	37693183	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GPR124	NM_032777	exon13	c.C1945A	p.R649R	GTCTTCCGAAATG	.	59.0	17.0	121.0	1.0	.	157
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154146874	154146874	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GPR149	NM_001038705	exon1	c.C531T	p.R177R	GGGCGTGCGCACG	.	33.0	19.0	54.0	0.0	.	96
GPSM1	26086	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139244159	139244159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GPSM1	NM_001145638	exon11	c.G1399C	p.E467Q	CCCCGGGAGGGCA	.	45.0	9.0	118.0	1.0	.	90
HAVCR1	26762	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156476055	156476055	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HAVCR1	NM_001099414	exon5	c.A775T	p.T259S	CTGTTGTGTAAGA	.	115.0	47.0	195.0	1.0	.	92
HECTD3	79654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45469577	45469577	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HECTD3	NM_024602	exon19	c.G2379A	p.T793T	GCGGCCCGTGACA	.	182.0	53.0	170.0	0.0	.	658
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28518063	28518063	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HERC2	NM_004667	exon8	c.G888T	p.L296L	CACAGCCAGCTCC	.	24.0	11.0	40.0	0.0	.	234
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139285298	139285298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HIPK2	NM_022740	exon11	c.A2300T	p.Q767L	GCAGGCTGCTGCA	.	166.0	86.0	213.0	0.0	.	785
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	21679444	21679444	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HNRNPC	NM_031314	exon9	c.G859T	p.E287X	CTTTTTCATCATC	.	75.0	30.0	129.0	0.0	.	90
HNRNPH1	3187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179043937	179043937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HNRNPH1	NM_001257293	exon11	c.C1140A	p.F380L	ATTCAAGAAGAGT	.	173.0	64.0	269.0	0.0	.	22
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	48149396	48149396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ITGA3	NM_005501	exon7	c.G1006T	p.E336X	AGGAAAGAGGAAG	.	155.0	68.0	213.0	0.0	.	229
JPH3	57338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87677929	87677929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	JPH3	NM_020655	exon2	c.T448C	p.Y150H	GTCCCGTATGGCA	.	44.0	33.0	174.0	2.0	.	92
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38823369	38823377	+	In_Frame_Del	DEL	ACACCAGGA	ACACCAGGA	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	ACACCAGGA	ACACCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	KCNJ4	NM_004981	exon2	c.761_769del	p.254_257del	TGGGCGACACCAG	.	147.0	28.0	183.0	0.0	.	90
KIAA0947	23379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5461287	5461287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	KIAA0947	NM_015325	exon13	c.G1840A	p.D614N	GATGATGACTCAG	.	112.0	58.0	105.0	1.0	.	48
KLHL30	377007	ucsc.edu;bcgsc.ca	37	2	239054430	239054430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	KLHL30	NM_198582	exon5	c.C1107A	p.N369K	CACCAACCACGCC	.	330.0	111.0	480.0	2.0	.	22
LAPTM5	7805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31208055	31208055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LAPTM5	NM_006762	exon7	c.G664T	p.V222L	CCTCCACCGAGTT	.	91.0	12.0	94.0	0.0	.	226
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136579639	136579639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LCT	NM_002299	exon5	c.G937A	p.G313R	CAAACCCAATGGT	.	76.0	16.0	77.0	0.0	.	101
LMBRD2	92255	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36136503	36136503	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LMBRD2	NM_001007527	exon6	c.A655T	p.R219W	AACCCCTTTTTGC	.	115.0	46.0	117.0	0.0	.	90
LMOD3	56203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69167886	69167886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LMOD3	NM_198271	exon2	c.C1620A	p.N540K	AATGTCGTTTAGC	.	137.0	46.0	197.0	0.0	.	23
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100021841	100021841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LOXL4	NM_032211	exon3	c.G407A	p.R136H	CGATGGCGCCGGG	.	51.0	11.0	75.0	0.0	.	230
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197562626	197562626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRCH3	NM_032773	exon9	c.G1184A	p.G395E	CCAAGGGACCAGA	.	88.0	33.0	119.0	0.0	.	91
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100174773	100174773	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRCH4	NM_002319	exon12	c.T1300C	p.L434L	GCTTCAAGAGGCT	.	67.0	21.0	133.0	0.0	.	136
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79988573	79988573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRRC45	NM_144999	exon17	c.G1905C	p.E635D	GGCGGAGATCGCC	.	74.0	49.0	72.0	0.0	.	91
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40657644	40657644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRRK2	NM_198578	exon14	c.G1597T	p.V533F	AATATGGTTAAAA	.	101.0	21.0	140.0	0.0	.	533
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33585803	33585803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LTBP1	NM_206943	exon27	c.G4140T	p.W1380C	GGGATGGGGAGAT	.	136.0	43.0	134.0	0.0	.	230
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75016623	75016623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LTBP2	NM_000428	exon8	c.G1732T	p.G578C	CACTGCCACAGCA	.	79.0	31.0	154.0	0.0	.	92
LYSMD4	145748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100269392	100269392	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LYSMD4	NM_152449	exon6	c.T830A	p.V277D	ACTGCAACTGCTA	.	138.0	56.0	181.0	0.0	.	90
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60024306	60024306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MED13	NM_005121	exon29	c.G6364C	p.D2122H	TTGAGTCAAGTGG	.	168.0	27.0	125.0	0.0	.	136
MEIS2	4212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	37184488	37184488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MEIS2	NM_170675	exon12	c.G1320T	p.M440I	TCCGTGCATCATC	.	79.0	33.0	102.0	1.0	.	92
METTL2A	339175	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60518074	60518074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	METTL2A	NM_181725	exon6	c.A766G	p.I256V	CTTGATATTATCA	.	370.0	32.0	384.0	0.0	.	248
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128133954	128133954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	METTL2B	NM_018396	exon6	c.A766G	p.I256V	CTTGATATTATCA	.	160.0	103.0	174.0	0.0	.	23
MGARP	84709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140187811	140187811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_032623	exon4	c.G665T	p.G222V	TCATCTCCAGCAG	.	26.0	18.0	25.0	0.0	.	.
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75515470	75515470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MLH3	NM_014381	exon2	c.C889T	p.R297W	TAGACCGGTGCCG	.	58.0	16.0	109.0	0.0	.	228
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118376454	118376454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MLL	NM_001197104	exon27	c.C9847T	p.R3283X	TCTCACCGAACTG	.	65.0	29.0	71.0	0.0	.	1255
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127455372	127455372	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MMP21	NM_147191	exon7	c.C1569T	p.G523G	TGCATTGCCTTTG	.	57.0	42.0	97.0	0.0	.	228
MPPED2	744	broad.mit.edu;bcgsc.ca	37	11	30410485	30410485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MPPED2	NM_001145399	exon7	c.C785A	p.S262Y	GCCTTGGAGATGC	.	49.0	21.0	72.0	1.0	.	91
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8390877	8390877	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MYH10	NM_001256012	exon36	c.G4920A	p.R1640R	CTGTTTCCTCTCA	.	41.0	29.0	58.0	0.0	.	92
MYO1B	4430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192273885	192273885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MYO1B	NM_001161819	exon26	c.G2747C	p.R916T	TAAAAAGGATTTT	.	100.0	49.0	85.0	0.0	.	238
NBPF10	100132406	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145359172	145359172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_001039703	exon72	c.G9112T	p.A3038S	GGCTTGGCTGTTG	.	89.0	21.0	132.0	1.0	.	.
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	29886676	29886676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NEFH	NM_021076	exon4	c.C3047A	p.A1016D	ACAAGGCCGCCAA	.	65.0	39.0	80.0	0.0	.	90
NEK10	152110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27346421	27346421	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NEK10	NM_199347	exon13	c.A845T	p.Q282L	TTCACCTGGGGCT	.	57.0	22.0	80.0	1.0	.	695
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31378831	31378831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NEUROD6	NM_022728	exon2	c.T52A	p.C18S	TTCTGCACATCTG	.	28.0	18.0	26.0	0.0	.	92
NKIRAS2	28511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40174597	40174597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NKIRAS2	NM_001144927	exon3	c.A275G	p.E92G	GCAGAGAGTCTTT	.	45.0	23.0	91.0	0.0	.	660
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103921354	103921354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NOLC1	NM_004741	exon11	c.G1783T	p.A595S	AAGGAGGCAGAGA	.	45.0	33.0	99.0	0.0	.	91
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	24921322	24921322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_018958	exon1	c.G308A	p.R103Q	CTGCTCGGAACCC	.	24.0	11.0	39.0	0.0	.	.
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57288476	57288476	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_024663	exon9	c.G1002A	p.K334K	CCCCAGGACGGTG	.	125.0	53.0	159.0	0.0	.	.
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	50463974	50463974	+	Silent	SNP	G	G	T	rs199546979	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NRXN1	NM_001135659	exon19	c.C3619A	p.R1207R	CCACTCGCACCAA	.	153.0	66.0	147.0	0.0	.	92
NTNG2	84628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135117276	135117276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NTNG2	NM_032536	exon8	c.C1371A	p.D457E	GTGCGACGACGAC	.	14.0	5.0	36.0	0.0	.	90
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125391806	125391806	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	OR1B1	NM_001004450	exon1	c.C9T	p.S3S	GGCAAAGCTCATC	.	94.0	40.0	94.0	0.0	.	68
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6943217	6943217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	OR2D3	NM_001004684	exon1	c.A985T	p.R329W	TCTCATAGGCAGT	.	48.0	20.0	54.0	0.0	.	68
OR2T27	403239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248813752	248813752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	OR2T27	NM_001001824	exon1	c.T434C	p.V145A	GCCGCCACAATCA	.	267.0	100.0	427.0	0.0	.	47
PARD3B	117583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	205829899	205829899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PARD3B	NM_205863	exon3	c.G247A	p.E83K	GAACAAGAACCAC	.	72.0	16.0	67.0	0.0	.	140
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141337154	141337154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PCDH12	NM_016580	exon1	c.C263G	p.T88R	CTGCCTGTGCTGA	.	194.0	102.0	236.0	0.0	.	93
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498513	28498513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PDX1	NM_000209	exon2	c.G527T	p.R176L	CGCGCCGGGTGGA	.	45.0	38.0	161.0	1.0	.	514
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216946462	216946462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PECR	NM_018441	exon1	c.G3T	p.M1I	GGAGGCCATCCCT	.	81.0	45.0	111.0	0.0	.	90
PGR	5241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100922293	100922293	+	Missense_Mutation	SNP	C	C	T	rs149186732	byfrequency	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	PGR,NS,carcinoma,0	PGR	NM_000926	exon5	c.G2219A	p.R740Q	AAGTTTCGAAAAC	.	106.0	31.0	132.0	0.0	C|1.000;T|0.000	652
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209141531	209141531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PIKFYVE	NM_015040	exon4	c.G418C	p.E140Q	CTCAAGGAAATCA	.	125.0	65.0	109.0	0.0	.	583
PKHD1	5314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920438	51920438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PKHD1	NM_170724	exon19	c.G1783T	p.V595F	TAAGGACAAGGTG	.	94.0	28.0	107.0	1.0	.	603
PLD3	23646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40872522	40872522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PLD3	NM_012268	exon4	c.G33T	p.K11N	GCTGAAGGTGCCT	.	44.0	25.0	69.0	0.0	.	228
POTEF	728378	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	130832599	130832599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	POTEF	NM_001099771	exon17	c.C2446T	p.R816C	TCTCGCGGTTGGC	.	446.0	225.0	526.0	2.0	.	27
PPP1R13L	10848	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45898840	45898840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PPP1R13L	NM_001142502	exon7	c.C1208G	p.P403R	TTAGGCGGGGGTG	.	10.0	5.0	18.0	0.0	.	91
PPP2R1A	5518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52714742	52714742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PPP2R1A	NM_014225	exon4	c.G500A	p.R167Q	AACTTCGACAGTG	.	43.0	16.0	36.0	0.0	.	1666
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47342858	47342858	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PREX1	NM_020820	exon5	c.A590T	p.Q197L	ATCCTCTGGATCG	.	128.0	57.0	187.0	0.0	.	231
PRSS45	377047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46784019	46784019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_199183	exon4	c.G508A	p.G170R	ACACCCCAGCCAG	.	137.0	59.0	159.0	0.0	.	.
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114332480	114332480	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PTGR1	NM_001146108	exon9	c.770delC	p.P257fs	ATCTCTGGGGGTG	.	56.0	11.0	68.0	0.0	.	90
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36595488	36595488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RAG1	NM_000448	exon2	c.G634T	p.D212Y	TCCTGTGACATCT	.	74.0	17.0	81.0	0.0	.	230
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu	37	2	109369517	109369517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RANBP2	NM_006267	exon13	c.1819delA	p.K607fs	TATTGGAAGAAAG	.	516.0	114.0	650.0	0.0	.	675
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30616004	30616004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RHBDL3	NM_138328	exon4	c.C488T	p.P163L	CCCCACCCTGGTT	.	194.0	83.0	359.0	0.0	.	91
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124765401	124765401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ROBO4	NM_019055	exon6	c.G988T	p.A330S	CTCGAGCCCGGCC	.	43.0	21.0	34.0	0.0	.	92
RTF1	23168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41763423	41763423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RTF1	NM_015138	exon8	c.A1079G	p.N360S	AATTGAATCGGGT	.	72.0	16.0	110.0	0.0	.	92
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237850763	237850763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RYR2	NM_001035	exon63	c.G9026T	p.C3009F	TATTCTGCAAACT	.	93.0	12.0	111.0	0.0	.	158
SCARA5	286133	broad.mit.edu;bcgsc.ca	37	8	27779611	27779611	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SCARA5	NM_173833	exon4	c.G393T	p.A131A	CTGCAGCGCGTCC	.	40.0	15.0	85.0	1.0	.	91
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	243437866	243437866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SDCCAG8	NM_006642	exon4	c.A328G	p.T110A	GAGGAAACCAATA	.	146.0	22.0	160.0	0.0	.	90
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177934193	177934193	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SEC16B	NM_033127	exon4	c.G522A	p.E174E	GTGGGTCTCACTA	.	114.0	85.0	109.0	0.0	.	93
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	9066573	9066573	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SEMA5A	NM_003966	exon17	c.G2259A	p.R753R	ACAGTACCGCATT	.	157.0	50.0	181.0	0.0	.	91
SFXN2	118980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104489489	104489489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SFXN2	NM_178858	exon6	c.C517T	p.P173S	GCGCCGCCCTTGG	.	25.0	21.0	33.0	0.0	.	90
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220500114	220500114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SLC4A3	NM_201574	exon13	c.G1949T	p.R650L	TGCTGCGCTCCGT	.	239.0	114.0	345.0	0.0	.	157
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11096863	11096863	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SMARCA4	NM_003072	exon4	c.356-2A>T	.	CTCTGCAGGTTAC	.	34.0	25.0	87.0	0.0	.	1523
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127721412	127721412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SND1	NM_014390	exon18	c.G1969C	p.V657L	ATGCAGGTCTGGG	.	92.0	53.0	125.0	0.0	.	92
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35437004	35437004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_080627	exon8	c.T2726C	p.F909S	AGCAGGAAGTTGT	.	51.0	20.0	69.0	0.0	.	.
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39222434	39222434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SOS1	NM_005633	exon20	c.A3176G	p.E1059G	CTTGGCTCCTGCT	.	138.0	70.0	144.0	0.0	.	851
SPAST	6683	broad.mit.edu;mdanderson.org	37	2	32289161	32289161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SPAST	NM_199436	exon1	c.G261A	p.M87I	CCTCATGGCAGCC	.	30.0	11.0	40.0	0.0	.	153
SRRM5	100170229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44116304	44116304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_001145641	exon1	c.A31G	p.S11G	AAGCCCAGTATGT	.	189.0	67.0	288.0	0.0	.	.
ST5	6764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	8752447	8752447	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ST5	NM_005418	exon6	c.390delC	p.A130fs	GAGGCAGGCAGCG	.	22.0	12.0	47.0	0.0	.	227
SYNJ1	8867	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	21	34100328	34100328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SYNJ1	NM_203446	exon1	c.G24T	p.W8C	TCCGCTCCAGCAG	.	11.0	10.0	12.0	0.0	.	232
SYT15	83849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46965864	46965864	+	Missense_Mutation	SNP	G	G	T	rs202146218	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SYT15	NM_031912	exon5	c.C673A	p.Q225K	CCCTCTGGGTGAT	.	90.0	31.0	142.0	0.0	.	22
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70674056	70674056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TAF1	NM_004606	exon33	c.T4850C	p.I1617T	AGGAGATTGTGAA	.	78.0	66.0	104.0	0.0	.	900
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139655333	139655333	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TBXAS1	NM_001166253	exon8	c.T756A	p.P252P	GGCCCCTGAGGAT	.	45.0	9.0	61.0	0.0	.	155
TCHH	7062	hgsc.bcm.edu;bcgsc.ca	37	1	152080284	152080284	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TCHH	NM_007113	exon3	c.A5409C	p.L1803L	CTGGCGTAGCTGT	.	79.0	6.0	93.0	0.0	.	72
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	105886085	105886085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TGFBRAP1	NM_004257	exon11	c.C2050T	p.H684Y	GGATATGCAGCGC	.	84.0	31.0	98.0	0.0	.	91
TH	7054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	2189846	2189846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TH	NM_199292	exon4	c.C455T	p.P152L	GCTCGCGGCCTCT	.	18.0	12.0	33.0	0.0	.	90
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137988760	137988760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	THSD7B	.	.	.	.	TCAGATGGGAAAC	.	154.0	50.0	177.0	1.0	.	75
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38798659	38798659	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TLR1	NM_003263	exon4	c.C1794T	p.T598T	GAGGGAGGTCACA	.	128.0	75.0	205.0	1.0	.	524
TMEM132A	54972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60698051	60698051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TMEM132A	NM_178031	exon5	c.G936T	p.K312N	TGCCAAGCTGGAC	.	42.0	11.0	80.0	0.0	.	227
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	89.0	69.0	249.0	2.0	C|1.000;|0.000	70225
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140093451	140093451	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TPRN	NM_001128228	exon1	c.C1713T	p.S571S	TCTTGAGGAGCCA	.	56.0	12.0	115.0	0.0	.	90
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73736204	73736204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TRPM3	NM_001007471	exon1	c.T67A	p.W23R	TCCACCAGGAAAA	.	68.0	34.0	88.0	0.0	.	521
TSHZ2	128553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872915	51872915	+	Missense_Mutation	SNP	G	G	T	rs201353411	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TSHZ2	NM_173485	exon2	c.G2918T	p.R973L	TCTCCCGGGTATC	.	126.0	43.0	130.0	1.0	.	232
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179463972	179463972	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TTN	NM_001267550	exon290	c.C56548T	p.L18850L	CTTCTAGCAATTT	.	112.0	51.0	123.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179665290	179665290	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TTN	NM_001267550	exon4	c.C415A	p.R139R	CATCCCGGTAGAA	.	132.0	51.0	108.0	0.0	.	636
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	15397946	15397946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TUSC3	NM_178234	exon1	c.G7T	p.A3S	ATGGGGGCCCGGG	.	17.0	8.0	40.0	0.0	.	516
UGT1A3	54659	ucsc.edu;bcgsc.ca	37	2	234638229	234638229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	UGT1A3	NM_019093	exon1	c.C457T	p.P153S	ACAGACCCCGTTA	.	230.0	34.0	215.0	2.0	.	24
USH1C	10083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17548323	17548323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USH1C	NM_153676	exon7	c.G556A	p.D186N	ACTGATCCACATA	.	135.0	40.0	170.0	1.0	.	91
USH1G	124590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72916210	72916210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USH1G	NM_173477	exon2	c.G721T	p.A241S	AGCGGGCGCTCTT	.	39.0	28.0	32.0	0.0	.	92
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132159790	132159790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USP26	NM_031907	exon1	c.G2459T	p.G820V	TGATCTCCCTTAT	.	52.0	11.0	16.0	0.0	.	661
USP9Y	8287	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	Y	14951877	14951877	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USP9Y	NM_004654	exon36	c.G5425T	p.E1809X	GAAAGAGAATGTG	.	35.0	28.0	82.0	0.0	.	136
VASP	7408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46021343	46021343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	VASP	NM_003370	exon3	c.G334T	p.A112S	CTAGAGGCGTTGG	.	68.0	26.0	148.0	0.0	.	514
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44403077	44403077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	WFDC3	NM_080614	exon7	c.C686T	p.P229L	GGCACCGGGATCT	.	53.0	12.0	70.0	0.0	.	90
XKR4	114786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56015754	56015754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	XKR4	NM_052898	exon1	c.G706T	p.A236S	AGCGGGGCTACCC	.	142.0	64.0	162.0	1.0	.	92
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	111698140	111698140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZCCHC16	NM_001004308	exon3	c.A184T	p.T62S	CATCTCACCCAGT	.	278.0	125.0	134.0	1.0	.	91
ZDHHC4	55146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6620253	6620253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZDHHC4	NM_018106	exon3	c.A61G	p.I21V	GTTCTTATCTGCG	.	168.0	88.0	237.0	1.0	.	154
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115812084	115812084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZFP37	NM_003408	exon2	c.C201A	p.N67K	GGCTTGGTTGCAG	.	121.0	66.0	156.0	0.0	.	92
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44571032	44571032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZNF223	NM_013361	exon5	c.A1051G	p.K351E	TGTGGGAAGAGCT	.	96.0	36.0	124.0	0.0	.	91
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	52941617	52941617	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZNF534	NM_001143939	exon4	c.G943T	p.E315X	TGTAGTGAATGTG	.	87.0	28.0	122.0	0.0	.	68
ZNF717	100131827	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	75788153	75788153	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_001128223	exon5	c.G621A	p.Q207Q	AAAAGTCTGCAGC	.	10.0	10.0	30.0	0.0	.	.
TCHH	7062	hgsc.bcm.edu;bcgsc.ca	37	1	152080252	152080253	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	.	.	.	p.P1814S	TGTTGGGGGCGCA	.	86.0	10.0	89.0	0.0	.	.
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32741654	32741655	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	.	.	.	p.H208N	GGTCCGCCATTAC	.	158.0	116.0	126.0	0.0	.	.