Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87196165	87196165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ABCB1	NM_000927	exon7	c.A466T	p.M156L	GTCGCATTATAGC	.	133.0	23.0	147.0	0.0	.	582
ACP1	52	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	277013	277013	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACP1	NM_007099	exon5	c.C327T	p.T109T	TAAAACCTGCAAA	.	241.0	39.0	277.0	0.0	.	523
ALG2	85365	ucsc.edu;bcgsc.ca	37	9	101981028	101981028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALG2	NM_033087	exon2	c.A439G	p.R147G	AATCTCTCTTGGT	.	40.0	4.0	65.0	0.0	.	92
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	418530	418530	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANO9	NM_001012302	exon23	c.G2190A	p.S730S	CTTCACCGACTGA	.	137.0	15.0	139.0	0.0	.	227
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7505118	7505118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGEF18	NM_001130955	exon1	c.T292A	p.S98T	CTGACCTCCAAGA	.	111.0	17.0	109.0	0.0	.	228
ATG14	22863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	55848812	55848812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ATG14	NM_014924	exon6	c.C745T	p.R249X	CCCATCGTCCTGA	.	397.0	83.0	429.0	0.0	.	90
AXIN2	8313	hgsc.bcm.edu;bcgsc.ca	37	17	63545764	63545765	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AXIN2	NM_004655	exon3	c.829_830del	p.277_277del	GGATCGCTCCTCT	.	95.0	14.0	127.0	0.0	.	658
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83926506	83926506	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BNC1	NM_001717	exon5	c.T2673C	p.D891D	GTTCCCATCACTG	.	90.0	23.0	84.0	0.0	.	93
BTBD18	643376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57512606	57512606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001145101	exon3	c.C1139A	p.T380N	TCTTGAGTGTTTT	.	106.0	8.0	91.0	0.0	.	.
CAP2	10486	broad.mit.edu;bcgsc.ca	37	6	17514111	17514111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CAP2	NM_006366	exon7	c.T562C	p.Y188H	AAGTCATATTTGA	.	153.0	10.0	163.0	1.0	.	91
CDR2L	30850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72998268	72998268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_014603	exon4	c.C451T	p.R151C	CGGGAACGCAGGC	.	80.0	18.0	39.0	0.0	.	.
CHRNB3	1142	ucsc.edu;bcgsc.ca	37	8	42587687	42587687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHRNB3	NM_000749	exon5	c.A1237G	p.S413G	TTTATCAGCCAGG	.	59.0	5.0	82.0	0.0	.	91
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19223332	19223332	+	Missense_Mutation	SNP	C	C	G	rs191439705		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CLTCL1	NM_001835	exon6	c.G856C	p.D286H	CTAGGTCGTACAG	.	131.0	32.0	164.0	0.0	C|0.999;G|0.001	230
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40961398	40961398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CNTD1	NM_173478	exon7	c.C838A	p.Q280K	CATTTGCAGAGCA	.	220.0	42.0	207.0	0.0	.	90
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165551580	165551580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COBLL1	NM_014900	exon12	c.A2436T	p.K812N	AGTTTCTTTCACA	.	325.0	60.0	396.0	0.0	.	93
COG2	22796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230819335	230819335	+	Silent	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COG2	NM_007357	exon11	c.G1182C	p.A394A	AATAGCGGGATCC	.	155.0	12.0	160.0	0.0	.	90
COL21A1	81578	broad.mit.edu;bcgsc.ca	37	6	56035645	56035645	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COL21A1	NM_030820	exon5	c.T828C	p.G276G	AGGAAGACCTTCT	.	87.0	5.0	117.0	0.0	.	24
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148923993	148923993	+	Missense_Mutation	SNP	T	T	C	rs201036476		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CP	NM_000096	exon6	c.A1170G	p.I390M	GATGTCTATACCA	.	253.0	62.0	267.0	0.0	T|0.999;C|0.001	515
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3081364	3081364	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSMD1	NM_033225	exon28	c.C4371A	p.G1457G	TGCTGGGCCCGTC	.	169.0	18.0	188.0	0.0	.	86
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38696748	38696748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSNK1E	NM_001894	exon5	c.C546G	p.I182M	CGTGTTGATGGAA	.	289.0	77.0	353.0	0.0	.	1193
CYP11B2	1585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143993483	143993483	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CYP11B2	NM_000498	exon9	c.A1425G	p.T475T	AGTTAGTGTCTCC	.	262.0	95.0	215.0	1.0	.	90
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	72204825	72204825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DACH1	NM_080759	exon3	c.C995A	p.A332D	GCAGCAGCTGCTG	.	118.0	39.0	100.0	0.0	.	135
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155226013	155226013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DCHS2	NM_017639	exon17	c.G4048T	p.G1350X	GGAATCCCCCATC	.	314.0	47.0	409.0	0.0	.	94
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135537950	135537950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX31	NM_022779	exon2	c.G523A	p.A175T	TTTGTGCGTTCCC	.	271.0	22.0	319.0	0.0	.	226
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31605091	31605092	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DENND5B	NM_144973	exon5	c.1412_1413insA	p.M471fs	AGGTCCATTTTTT	.	269.0	42.0	227.0	0.0	.	24
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38781906	38781906	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAH8	NM_001206927	exon25	c.3333+1G>T	.	AATGTGGTAAGTA	.	146.0	21.0	147.0	0.0	.	615
DNAI1	27019	broad.mit.edu;bcgsc.ca	37	9	34506717	34506717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAI1	NM_012144	exon13	c.G1156A	p.V386I	AGCGGCGTCATGT	.	188.0	8.0	160.0	1.0	.	90
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	169483728	169483728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	DOCK2,NS,carcinoma,-1	DOCK2	NM_004946	exon43	c.C4336T	p.R1446W	TACTCCCGGCCCG	.	215.0	16.0	175.0	1.0	.	97
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154263941	154263941	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DPP6	NM_130797	exon5	c.C567T	p.A189A	AAGAGCCATCAGA	.	127.0	15.0	185.0	0.0	.	652
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184045645	184045645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EIF4G1	NM_001194946	exon27	c.G3829A	p.A1277T	GAGCTGGCCTCAC	.	109.0	33.0	106.0	0.0	.	344
ENPP6	133121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185038169	185038169	+	Missense_Mutation	SNP	C	C	T	rs139781867	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ENPP6	NM_153343	exon5	c.G695A	p.R232H	TTCAGGCGGTCCT	.	168.0	31.0	130.0	0.0	C|0.999;T|0.001	90
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32582635	32582635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPC1	NM_001272004	exon3	c.A344G	p.Y115C	AAATCATAATCAG	.	260.0	37.0	210.0	0.0	.	93
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66361224	66361224	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA5	NM_004439	exon4	c.C948T	p.I316I	GCTCTGGATGTGA	.	209.0	37.0	216.0	0.0	.	1430
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	94124469	94124469	+	Silent	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA7	NM_004440	exon2	c.T114A	p.S38S	TGCTTTAGAATCC	.	71.0	10.0	97.0	0.0	.	1453
FAM111B	374393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58893210	58893210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM111B	NM_198947	exon4	c.T1640G	p.I547S	ATGCCATTTTAAA	.	69.0	14.0	90.0	0.0	.	92
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92085831	92085831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAT3	NM_001008781	exon1	c.G553T	p.A185S	ACAGACGCAGATA	.	86.0	14.0	108.0	0.0	.	73
FGF11	2256	broad.mit.edu;mdanderson.org	37	17	7343007	7343007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FGF11	NM_004112	exon1	c.C68T	p.P23L	GCCGGCCGGTGTC	.	34.0	5.0	12.0	0.0	.	522
FLRT3	23767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	14307370	14307370	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FLRT3	NM_013281	exon2	c.G783A	p.R261R	GGGCACCCGATTG	.	131.0	30.0	154.0	1.0	.	91
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28883065	28883065	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FLT1	NM_002019	exon29	c.3636-1G>C	.	ACGTATCTAATGA	.	67.0	8.0	71.0	0.0	.	1406
FNBP4	23360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47744730	47744730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FNBP4	NM_015308	exon15	c.C2603A	p.A868E	GCAGGTGCTGCCG	.	237.0	35.0	238.0	1.0	.	91
FNDC1	84624	broad.mit.edu;bcgsc.ca	37	6	159655417	159655417	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FNDC1	NM_032532	exon11	c.C3873T	p.S1291S	CTTCTCCACCACC	.	246.0	11.0	180.0	0.0	.	138
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79455713	79455713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRAS1	NM_025074	exon71	c.C11036T	p.P3679L	TGGATCCCAATAC	.	133.0	20.0	133.0	0.0	.	68
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	79328918	79328918	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRAS1	NM_001166133	exon31	c.C4231T	p.Q1411X	TTCACCCAGCAGG	.	207.0	27.0	162.0	0.0	.	68
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	151821044	151821044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GABRQ	NM_018558	exon9	c.C1199A	p.P400H	CTCTCCCCATCAC	.	169.0	66.0	159.0	0.0	.	133
GMCL1	64395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70066643	70066643	+	Missense_Mutation	SNP	A	A	G	rs147534979	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GMCL1	NM_178439	exon3	c.A439G	p.I147V	ATGAATATTATTG	.	484.0	97.0	592.0	1.0	A|0.999;G|0.001	93
GOLGA3	2802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133358985	133358985	+	Missense_Mutation	SNP	A	A	C	rs79085716		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GOLGA3	NM_005895	exon17	c.T3362G	p.L1121R	CCCGTAAGCTTCC	.	394.0	65.0	393.0	1.0	A|0.999;C|0.001	95
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105842667	105842667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRIA4	NM_000829	exon15	c.A2321C	p.K774T	TTTTGAAACTCAG	.	201.0	40.0	164.0	1.0	.	230
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185970862	185970862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HMCN1	NM_031935	exon28	c.T4337A	p.I1446N	TTAACATTGATGT	.	189.0	46.0	234.0	0.0	.	113
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70884548	70884548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HYDIN	NM_001270974	exon74	c.G12454A	p.D4152N	AAATATCAATTGG	.	134.0	20.0	162.0	0.0	.	92
IKBIP	121457	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99019886	99019886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IKBIP	NM_153687	exon3	c.T956C	p.M319T	ATCTCCATTATTT	.	421.0	70.0	571.0	1.0	.	226
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	155239667	155239667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IL9R	NM_002186	exon9	c.C1159A	p.L387M	GGGAACCTGAGCT	.	330.0	38.0	247.0	0.0	.	40
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1517435	1517435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001080453	exon34	c.G4768A	p.E1590K	CCTCCTCCTGCAG	.	165.0	21.0	93.0	0.0	.	.
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20445703	20445703	+	Silent	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITGB8	NM_002214	exon12	c.T1932A	p.L644L	ATGCCTTCACCCT	.	141.0	25.0	145.0	0.0	.	227
ITSN1	6453	broad.mit.edu;bcgsc.ca	37	21	35208755	35208755	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITSN1	NM_001001132	exon29	c.G3480A	p.V1160V	CCAGGTGATTGGG	.	51.0	4.0	79.0	0.0	.	94
KCND2	3751	broad.mit.edu;bcgsc.ca	37	7	120382615	120382615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	KCND2,brain,glioma,-2	KCND2	NM_012281	exon4	c.A1426G	p.T476A	TTTGAAACCCAGC	.	200.0	10.0	186.0	0.0	.	517
KLHL22	84861	broad.mit.edu;bcgsc.ca	37	22	20843480	20843480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KLHL22	NM_032775	exon2	c.T19C	p.F7L	GGGTGAACTCCTG	.	158.0	8.0	163.0	0.0	.	278
KRT14	3861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39742690	39742690	+	Missense_Mutation	SNP	C	C	T	rs61027685	bycluster	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KRT14	NM_000526	exon1	c.G397A	p.V133M	CACGCACCTTGTC	.	225.0	48.0	200.0	0.0	.	91
LIPJ	142910	ucsc.edu;bcgsc.ca	37	10	90351178	90351178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LIPJ	NM_001010939	exon4	c.A53G	p.D18G	AATATGATATTGT	.	41.0	4.0	101.0	0.0	.	91
LLGL2	3993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73569581	73569581	+	Silent	SNP	C	C	G	rs144386071	byfrequency;alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LLGL2	NM_004524	exon21	c.C2745G	p.P915P	CTCACCCTCGGAG	.	254.0	40.0	224.0	0.0	C|0.997;T|0.003	251
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141812802	141812802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRP1B	NM_018557	exon10	c.C1435T	p.P479S	CATATGGATCGAC	.	167.0	22.0	167.0	0.0	.	311
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140985121	140985121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAGEC3	NM_138702	exon7	c.A1577G	p.E526G	TCTTTGAAGACAC	.	44.0	22.0	75.0	0.0	.	555
MAP3K15	389840	ucsc.edu;bcgsc.ca	37	X	19418728	19418728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAP3K15	NM_001001671	exon14	c.A1898G	p.E633G	TCCAGCTCCACCG	.	51.0	5.0	61.0	0.0	.	335
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154890002	154890002	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MME	NM_000902	exon21	c.2076+1G>T	.	GCACAGGTATTGT	.	827.0	132.0	1098.0	0.0	.	516
MPP1	4354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154013425	154013425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MPP1	NM_002436	exon7	c.G685A	p.A229T	TACTTGCCACTCG	.	70.0	30.0	65.0	0.0	.	132
MSH4	4438	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	76365354	76365354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MSH4	NM_002440	exon19	c.C2582T	p.A861V	TGGATGCCAAGGA	.	733.0	42.0	940.0	1.0	.	660
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048323	9048323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon5	c.C33308A	p.T11103N	GAACTAGTGACCA	.	133.0	22.0	158.0	1.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9024161	9024161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon18	c.A37111T	p.T12371S	ATGGAGTCCCTGA	.	241.0	21.0	254.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048324	9048324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon5	c.A33307C	p.T11103P	AACTAGTGACCAG	.	136.0	21.0	158.0	0.0	.	566
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346814	71346814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC7	NM_001145007	exon4	c.C353T	p.S118L	TCCCATCAGCTTC	.	160.0	31.0	171.0	0.0	.	93
MYBL1	4603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67492397	67492397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYBL1	NM_001080416	exon9	c.T1072C	p.F358L	CTGCAAATTCTGG	.	206.0	20.0	111.0	0.0	.	395
MYRF	745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61537931	61537931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001127392	exon5	c.C674T	p.P225L	TGGTGCCCACTGA	.	363.0	37.0	278.0	0.0	.	.
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1812887	1812887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYT1L	NM_015025	exon22	c.G3127A	p.G1043R	GCTCTCCAGAAAG	.	170.0	26.0	197.0	0.0	.	95
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119154261	119154261	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NDST3	NM_004784	exon9	c.T1914C	p.N638N	CTTTAATAGAAAT	.	238.0	45.0	234.0	0.0	.	153
NELFB	25920	ucsc.edu;bcgsc.ca	37	9	140151427	140151427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_015456	exon4	c.A518G	p.E173G	AGAAGGAGAGCGC	.	58.0	6.0	38.0	0.0	.	.
NF2	4771	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	30069414	30069414	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NF2	NM_000268	exon12	c.G1279T	p.E427X	CTGATGGAGCAGA	.	106.0	25.0	96.0	1.0	.	4696
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	96875607	96875608	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NR2F2	NM_021005	exon1	c.273_274del	p.91_92del	GCACTACGGCCAG	.	100.0	15.0	100.0	0.0	.	228
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5603521	5603521	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NTF3	NM_001102654	exon2	c.G180A	p.K60K	AAACAAGCTCTCC	.	54.0	10.0	68.0	0.0	.	205
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135269705	135269705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NUP205	NM_015135	exon8	c.C1168T	p.R390C	TATATTCGCAGAG	.	153.0	18.0	161.0	0.0	.	207
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247614391	247614391	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR2B11	NM_001004492	exon1	c.T894C	p.N298N	ATCTTTATTTCTC	.	186.0	28.0	202.0	0.0	.	69
OR2W3	343171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248059698	248059698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR2W3	NM_001001957	exon1	c.G810T	p.Q270H	GGACCAGGGCATG	.	269.0	69.0	292.0	1.0	.	115
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55541610	55541610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR5D13	NM_001001967	exon1	c.G697A	p.A233T	CGATCTGCAAGTG	.	189.0	17.0	170.0	0.0	.	71
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140210049	140210049	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHA6	NM_018909	exon1	c.A2373G	p.L791L	GGATTTAAATGAA	.	153.0	12.0	133.0	0.0	.	92
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140432442	140432442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHB1	NM_013340	exon1	c.G1387A	p.E463K	GTTCGAGAAAACA	.	147.0	23.0	146.0	0.0	.	90
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140753695	140753695	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHGA6	NM_018919	exon1	c.G45T	p.L15L	GGTCCTGCTCCTC	.	176.0	47.0	122.0	0.0	.	67
PDE1C	5137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31877505	31877505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PDE1C	NM_001191058	exon11	c.C1241T	p.T414I	AGAGCAGTCTTCA	.	117.0	11.0	109.0	0.0	.	94
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138426053	138426053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PIK3CB	NM_006219	exon9	c.T1478C	p.V493A	AATTTAACATGCA	.	265.0	34.0	257.0	0.0	.	1311
PION	54103	ucsc.edu;bcgsc.ca	37	7	76982931	76982931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PION	NM_017439	exon17	c.T1366C	p.S456P	AGGCAGAGACATT	.	47.0	4.0	70.0	0.0	.	514
PLCL1	5334	broad.mit.edu;bcgsc.ca	37	2	198950191	198950191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLCL1	NM_006226	exon2	c.T1950A	p.D650E	GATCGATTCCAGT	.	153.0	7.0	164.0	1.0	.	228
PLEK2	26499	ucsc.edu;bcgsc.ca	37	14	67862126	67862126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLEK2	NM_016445	exon3	c.A382G	p.S128G	GCAGGCTGATGTG	.	47.0	5.0	47.0	1.0	.	92
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9991578	9991578	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRRT3	NM_207351	exon2	c.T222C	p.D74D	GCGGACATCAGAG	.	120.0	25.0	90.0	0.0	.	90
RASSF4	83937	ucsc.edu;bcgsc.ca	37	10	45479554	45479554	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RASSF4	NM_032023	exon5	c.C366T	p.D122D	CACAGACAGCTCG	.	39.0	4.0	27.0	0.0	.	290
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151108527	151108527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SEMA6C	NM_001178061	exon13	c.C1219A	p.P407T	CAGGTGGTACAGC	.	452.0	170.0	284.0	0.0	.	92
SGK3	23678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67752248	67752248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SGK3	NM_001033578	exon11	c.A752G	p.H251R	TTTTCCACTTACA	.	183.0	72.0	145.0	1.0	.	1003
SH3D21	79729	broad.mit.edu;bcgsc.ca	37	1	36774016	36774016	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SH3D21	NM_001162530	exon9	c.A666G	p.E222E	GTGGGAAGGAGAG	.	90.0	7.0	51.0	0.0	.	91
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122787291	122787291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC13A1	NM_022444	exon7	c.C734G	p.A245G	GAGTAGGCAATGC	.	168.0	29.0	163.0	0.0	.	92
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7967043	7967043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC2A14	NM_153449	exon12	c.C1432T	p.R478C	TGCCACGGGTCTC	.	195.0	15.0	202.0	0.0	.	91
SLCO1A2	6579	broad.mit.edu;bcgsc.ca	37	12	21445184	21445184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLCO1A2	NM_134431	exon13	c.G1524T	p.L508F	GAGCATCAAGGAA	.	85.0	7.0	89.0	0.0	.	157
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	601376	601376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SOLH	NM_005632	exon8	c.G2141A	p.R714H	GCCTGCGCCCCCG	.	44.0	7.0	27.0	0.0	.	523
SPATA2	9825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	48523374	48523374	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPATA2	NM_006038	exon3	c.G345T	p.T115T	AGGGCCCGTGTAG	.	242.0	22.0	186.0	0.0	.	91
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158623173	158623173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPTA1	NM_003126	exon22	c.C3079A	p.P1027T	CAGCTGGGACAAT	.	232.0	97.0	203.0	0.0	.	142
SRPK2	6733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104787043	104787043	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SRPK2	NM_182692	exon8	c.G684A	p.P228P	ATTTTCCGGCTTT	.	277.0	27.0	312.0	2.0	.	805
ST14	6768	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130067803	130067803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ST14	NM_021978	exon12	c.G1422T	p.W474C	TGGCTGGGCCGAC	.	65.0	9.0	48.0	0.0	.	94
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152674871	152674871	+	Missense_Mutation	SNP	G	G	T	rs201704617	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SYNE1	NM_182961	exon68	c.C10935A	p.H3645Q	TTCTTCGTGCCAC	.	132.0	21.0	122.0	0.0	G|0.999;A|0.001	607
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104640417	104640417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TACR3	NM_001059	exon1	c.C416A	p.T139K	ACCAACGTGTTGA	.	128.0	17.0	128.0	0.0	.	525
TCAIM	285343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44449032	44449032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_173826	exon11	c.T1349G	p.V450G	AAATGGTGGATTG	.	362.0	56.0	376.0	0.0	.	.
TEX10	54881	broad.mit.edu;bcgsc.ca	37	9	103090078	103090078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TEX10	NM_001161584	exon8	c.C1801G	p.R601G	AAATTCGGAGGGC	.	235.0	14.0	292.0	0.0	.	92
TGM3	7053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2321189	2321189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TGM3	NM_003245	exon13	c.G2044T	p.A682S	TTCCCTGCAATCA	.	141.0	12.0	122.0	0.0	.	139
TMBIM6	7009	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50152248	50152248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMBIM6	NM_001098576	exon6	c.T592C	p.Y198H	CGTAGCTACCTCT	.	206.0	26.0	205.0	1.0	.	90
TMEM115	11070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50396005	50396005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM115	NM_007024	exon1	c.G490A	p.V164M	CGCGCACCTGGGG	.	24.0	7.0	24.0	0.0	.	278
TMEM30A	55754	ucsc.edu;bcgsc.ca	37	6	75974945	75974945	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM30A	NM_018247	exon4	c.453+2T>A	.	TTACTTACAAGCA	.	45.0	4.0	54.0	0.0	.	90
TNP1	7141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217724619	217724619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNP1	NM_003284	exon1	c.G139T	p.A47S	ACTCACCGTCATC	.	226.0	37.0	221.0	0.0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	TP53,NS,carcinoma,0	TP53	NM_000546	exon6	c.376-1G>A	.	GGAGTACTGTAGG	.	50.0	8.0	56.0	0.0	.	70225
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43749109	43749109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TP53BP1	NM_001141980	exon12	c.C1697G	p.P566R	TCAGCAGGAACAA	.	174.0	34.0	204.0	0.0	.	294
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59059680	59059680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM28	NM_005762	exon8	c.G1121A	p.R374Q	TGCACCGGGCCCT	.	129.0	34.0	121.0	0.0	.	870
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140401304	140401304	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM42	NM_152616	exon2	c.C342A	p.S114S	TTTCAGCTCCAAG	.	119.0	15.0	111.0	0.0	.	227
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32859027	32859027	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTC27	NM_017735	exon3	c.C351T	p.H117H	CTTACACCCTCAG	.	461.0	74.0	456.0	0.0	.	90
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179395002	179395002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTN	NM_001267550	exon358	c.C106340G	p.P35447R	GGCCGGGGTTCTC	.	134.0	21.0	131.0	0.0	.	636
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu	37	3	11606425	11606426	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VGLL4	NM_001128219	exon3	c.340_341del	p.114_114del	GCCACAGCGCGCT	.	105.0	11.0	80.0	0.0	.	91
VWA9	81556	broad.mit.edu;bcgsc.ca	37	15	65883977	65883977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001207058	exon9	c.T1025C	p.L342P	CATGGGAGAGGTT	.	171.0	8.0	174.0	1.0	.	.
WDR24	84219	ucsc.edu;bcgsc.ca	37	16	736891	736891	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	WDR24	NM_032259	exon3	c.T1185C	p.S395S	GAGGGCACTGGAG	.	29.0	4.0	32.0	0.0	.	91
ZNF229	7772	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934680	44934680	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF229	NM_014518	exon6	c.T276C	p.D92D	TTCTTCATCTTGA	.	121.0	11.0	161.0	0.0	.	94
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20002465	20002465	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF253	NM_021047	exon4	c.A409T	p.T137S	TGTTTGACAACTA	.	163.0	27.0	236.0	0.0	.	90
AMER3	205147	broad.mit.edu;bcgsc.ca	37	2	131520956	131520957	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	p.SP437RT	CCCCAGCCCAGAT	.	56.0	7.0	41.0	0.0	.	.