Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35538246	35538246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ACACA	NM_198834	exon40	c.A4828G	p.I1610V	TATTGATTAACAT	.	224.0	112.0	345.0	0.0	.	154
AKAP6	9472	ucsc.edu;bcgsc.ca	37	14	33014861	33014861	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AKAP6	NM_004274	exon4	c.A1002G	p.T334T	TCTGACAAATGCT	.	46.0	4.0	87.0	0.0	.	733
ALG1L2	644974	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129811029	129811029	+	Silent	SNP	C	C	A	rs191831656	by1000genomes;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001136152	exon3	c.C217A	p.R73R	CACGAGCGGCCAG	.	314.0	103.0	143.0	1.0	C|0.997;T|0.003	.
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu	37	17	7950032	7950032	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALOX15B	NM_001141	exon9	c.1247delC	p.A416fs	CACTCGCCCGGGA	.	65.0	11.0	55.0	0.0	.	227
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115220086	115220086	+	Missense_Mutation	SNP	C	C	A	rs121912682	bycluster;by1000genomes;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AMPD1	NM_000036	exon10	c.G1373T	p.R458L	GACAGGCGGGGCT	.	143.0	21.0	96.0	0.0	G|0.999;A|0.001	293
APOB	338	ucsc.edu;bcgsc.ca	37	2	21255391	21255391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	APOB	NM_000384	exon10	c.A1187G	p.Q396R	AGCCACTGGAGGA	.	51.0	5.0	50.0	0.0	.	175
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27087894	27087898	+	Frame_Shift_Del	DEL	GCCAC	GCCAC	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	GCCAC	GCCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARID1A	NM_006015	exon6	c.2181_2185del	p.727_729del	ACCTCGGCCACCC	.	202.0	70.0	325.0	0.0	.	584
ARTN	9048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	44402421	44402421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARTN	NM_001136215	exon4	c.G671T	p.C224F	CCGCCTGCGGCTG	.	59.0	28.0	21.0	0.0	.	90
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	131164981	131164981	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASAP1	NM_001247996	exon15	c.1059+1G>A	.	TACTTACTGTGGC	.	364.0	61.0	175.0	0.0	.	95
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123270025	123270025	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASB15	NM_080928	exon9	c.T1446C	p.C482C	GTTCTGTGAGTTT	.	133.0	52.0	143.0	0.0	.	228
ASB2	51676	broad.mit.edu;bcgsc.ca	37	14	94405769	94405769	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASB2	NM_001202429	exon8	c.C1302T	p.G434G	GTCGGCGCCGTGT	.	60.0	8.0	33.0	1.0	.	228
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57038650	57038650	+	Missense_Mutation	SNP	T	T	C	rs11542649	bycluster	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP5B	NM_001686	exon3	c.A400G	p.I134V	CAGGAATTTTGAT	.	562.0	161.0	381.0	0.0	T|1.000;|0.000	91
ATP6V0D2	245972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87162487	87162487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP6V0D2	NM_152565	exon6	c.C786A	p.D262E	CTTTGACCAGATG	.	102.0	86.0	107.0	2.0	.	90
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207068	32207068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BAI2	NM_001703	exon11	c.G1700T	p.R567L	CAGCGGCGGCTGG	.	132.0	70.0	61.0	0.0	.	526
BTBD10	84280	broad.mit.edu;bcgsc.ca	37	11	13443366	13443366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BTBD10	NM_032320	exon3	c.A121G	p.K41E	CTCCTTTAGCAAT	.	120.0	5.0	132.0	0.0	.	90
C1QTNF4	114900	hgsc.bcm.edu;mdanderson.org	37	11	47611682	47611682	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C1QTNF4	NM_031909	exon2	c.C681T	p.G227G	GTAGGCGCCGGGC	.	42.0	13.0	14.0	0.0	.	90
C6	729	ucsc.edu;bcgsc.ca	37	5	41158869	41158869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C6	NM_001115131	exon13	c.T1875G	p.N625K	GTCATCATTGATA	.	40.0	4.0	135.0	1.0	.	95
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	115085443	115085443	+	Silent	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CADM1	NM_014333	exon7	c.G879C	p.L293L	CCCAGACAGTACG	.	171.0	25.0	389.0	0.0	.	92
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55582881	55582881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC88A	NM_018084	exon8	c.A634G	p.I212V	GTTCTATGATAGT	.	78.0	30.0	75.0	0.0	.	94
CDH15	1013	ucsc.edu;bcgsc.ca	37	16	89253841	89253841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDH15	NM_004933	exon6	c.T668C	p.V223A	AGGTGGTCGCGGT	.	47.0	4.0	44.0	0.0	.	523
CDK5RAP2	55755	ucsc.edu;bcgsc.ca	37	9	123202153	123202153	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDK5RAP2	NM_018249	exon24	c.G3246A	p.L1082L	GGAACTCAGGTAA	.	36.0	4.0	121.0	0.0	.	229
CERCAM	51148	broad.mit.edu;mdanderson.org	37	9	131183275	131183275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CERCAM	NM_016174	exon1	c.G119T	p.R40L	TGGCCCGCAATGC	.	14.0	10.0	12.0	0.0	.	69
CHST15	51363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	125769678	125769678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CHST15	NM_001270764	exon8	c.G1673A	p.W558X	GTCTTCCACGCAA	.	94.0	34.0	37.0	0.0	.	91
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54646892	54646892	+	Silent	SNP	C	C	T	rs149889819		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CNOT3	NM_014516	exon3	c.C63T	p.G21G	CGAGGGCGTGGAG	.	70.0	19.0	43.0	0.0	C|0.999;T|0.000	93
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70993489	70993489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL9A1	NM_001851	exon6	c.C731A	p.P244H	CGCAGGGGGTCAC	.	236.0	64.0	140.0	1.0	.	94
CREBBP	1387	ucsc.edu;bcgsc.ca	37	16	3820965	3820965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CREBBP	NM_004380	exon14	c.T2486C	p.L829P	TTAGGAAGAGCAG	.	48.0	5.0	48.0	1.0	.	1807
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	113662479	113662479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CSMD3	NM_198123	exon19	c.G3104T	p.S1035I	TCACAACTAAATG	.	567.0	50.0	287.0	0.0	.	1132
CTNNA2	1496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80782831	80782831	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CTNNA2	NM_001164883	exon12	c.G1554C	p.L518F	CATCTTGGAGGAT	.	26.0	12.0	57.0	0.0	.	368
CYP39A1	51302	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607325	46607325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CYP39A1	NM_016593	exon3	c.C394T	p.L132F	GATGGAGATTGAC	.	350.0	64.0	396.0	2.0	.	91
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176895871	176895871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DBN1	NM_080881	exon3	c.A122T	p.D41V	AGGTCATCGGAGC	.	176.0	23.0	101.0	0.0	.	587
DCLRE1A	9937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115609989	115609989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCLRE1A	NM_014881	exon2	c.A875G	p.D292G	CTGAAGTCATTTT	.	236.0	73.0	153.0	1.0	.	228
DDX58	23586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32457157	32457157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDX58	NM_014314	exon18	c.A2741G	p.E914G	ATCTTCTCAAAAT	.	113.0	39.0	234.0	2.0	.	230
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32457172	32457178	+	Frame_Shift_Del	DEL	TTCCACT	TTCCACT	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	TTCCACT	TTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDX58	NM_014314	exon18	c.2720_2726del	p.907_909del	AAGTCCTTCCACT	.	107.0	0.0	246.0	0.0	.	230
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31562239	31562239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DENND5B	NM_144973	exon14	c.G2761A	p.A921T	CCACAGCATTGAG	.	116.0	41.0	155.0	0.0	.	24
DHX37	57647	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	125438447	125438447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DHX37	NM_032656	exon20	c.C2674T	p.R892W	GGCCCCGCAGGCG	.	76.0	8.0	20.0	0.0	.	227
DNAH9	1770	broad.mit.edu;mdanderson.org	37	17	11738188	11738188	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAH9	NM_001372	exon49	c.G9480A	p.A3160A	AGCAGCGCAGGCA	.	38.0	8.0	57.0	0.0	.	168
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	46860102	46860102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DYM	NM_017653	exon7	c.C616T	p.P206S	ACCATGGACCTCG	.	80.0	12.0	80.0	0.0	.	226
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38370498	38370498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EGFLAM	NM_001205301	exon6	c.G646T	p.V216L	TTTGCCGTGAGGG	.	34.0	15.0	62.0	1.0	.	187
EIF2AK3	9451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88874198	88874198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EIF2AK3	NM_004836	exon13	c.C2803T	p.H935Y	CCCTGTGCATCAG	.	117.0	29.0	170.0	1.0	.	361
FAM155A	728215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108518800	108518800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM155A	NM_001080396	exon1	c.A145C	p.T49P	GGACTGTGAAAAA	.	129.0	29.0	54.0	1.0	.	23
FBN2	2201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127610344	127610344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBN2	NM_001999	exon60	c.C7626A	p.N2542K	CTGGCAGTTATGC	.	64.0	14.0	111.0	2.0	.	146
FBN3	84467	ucsc.edu;bcgsc.ca	37	19	8175981	8175981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBN3	NM_032447	exon32	c.A4171G	p.M1391V	AGCCCATCTCACA	.	47.0	4.0	44.0	0.0	.	100
FGD6	55785	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95603522	95603522	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FGD6	NM_018351	exon2	c.C1538G	p.A513G	GAGGCAGCCTTTT	.	217.0	69.0	214.0	1.0	.	137
FGFRL1	53834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1015991	1015991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FGFRL1	NM_001004356	exon3	c.G80T	p.G27V	CCGCAGGCCCCCC	.	78.0	20.0	39.0	0.0	.	90
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49710511	49710511	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FNDC3A	NM_001079673	exon6	c.A534G	p.R178R	TGAACGATCTAGT	.	133.0	59.0	241.0	1.0	.	278
FOXG1	2290	broad.mit.edu;mdanderson.org	37	14	29237565	29237565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXG1	NM_005249	exon1	c.C1080A	p.N360K	CGCCAACGGCCTG	.	46.0	8.0	23.0	0.0	.	660
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535204	169535204	+	Missense_Mutation	SNP	C	C	A	rs35678180	byfrequency;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXI1	NM_012188	exon2	c.C726A	p.S242R	GGACAGCCCCAAG	.	113.0	25.0	57.0	0.0	C|0.995;T|0.005	229
GAB1	2549	broad.mit.edu;mdanderson.org	37	4	144336701	144336701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GAB1	NM_207123	exon2	c.C144A	p.Y48X	ATATTACAAAAAT	.	292.0	22.0	240.0	1.0	.	1146
GABRR2	2570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89967516	89967516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GABRR2	NM_002043	exon9	c.G1271T	p.G424V	AGAAGCCCCTTCT	.	244.0	87.0	240.0	2.0	.	68
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120580635	120580635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GCN1L1	NM_006836	exon43	c.C5606T	p.S1869F	TTGTTGGACTGGG	.	199.0	63.0	140.0	0.0	.	94
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55263983	55263983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GFRAL	NM_207410	exon7	c.C958A	p.P320T	GATTATCCAACCC	.	489.0	149.0	648.0	1.0	.	154
GIMAP2	26157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150390064	150390064	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GIMAP2	NM_015660	exon3	c.G690T	p.V230V	ACCTGTGGGATCA	.	134.0	29.0	153.0	1.0	.	91
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19740822	19740822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GMIP	NM_016573	exon21	c.G2863A	p.A955T	AGGTGGCCCTGGG	.	182.0	38.0	90.0	0.0	.	91
GNAI1	2770	broad.mit.edu;mdanderson.org	37	7	79764496	79764496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GNAI1	NM_002069	exon1	c.C20T	p.A7V	TGAGCGCCGAGGA	.	68.0	13.0	35.0	1.0	.	653
GPR135	64582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59930780	59930780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR135	NM_022571	exon1	c.A1165G	p.I389V	TGCGGATGGCGTA	.	73.0	11.0	40.0	0.0	.	90
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89953983	89953983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR98	NM_032119	exon21	c.C4640T	p.S1547F	TAGTTTCTGTATA	.	223.0	30.0	214.0	0.0	.	103
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46999457	46999457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRIN2	NM_014696	exon3	c.C577G	p.Q193E	GCGAGTCAGTTGT	.	59.0	7.0	33.0	0.0	.	90
GPRIN2	9721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47000008	47000008	+	Silent	SNP	G	G	T	rs111800394	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRIN2	NM_014696	exon3	c.G1128T	p.P376P	GGTGCCGTCCCCT	.	221.0	23.0	78.0	0.0	G|0.500;A|0.500	90
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7216697	7216697	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPS2	NM_004489	exon9	c.724+2T>C	.	GTTATCACCTGTC	.	98.0	51.0	97.0	0.0	.	93
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu	37	17	58156056	58156056	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HEATR6	NM_022070	exon2	c.219+1G>A	.	CGCCTACCTCCGG	.	38.0	14.0	14.0	0.0	.	227
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222705320	222705320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HHIPL2	NM_024746	exon6	c.G1711C	p.E571Q	CATCTTCAGCAAA	.	62.0	25.0	91.0	0.0	.	69
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70884513	70884513	+	Silent	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HYDIN	NM_001270974	exon74	c.G12489C	p.V4163V	AAAGTTCACATCT	.	68.0	34.0	173.0	0.0	.	92
IFLTD1	160492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25801457	25801457	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFLTD1	NM_001145727	exon1	c.T29A	p.I10N	ACACCGATGTCTC	.	228.0	78.0	255.0	0.0	.	92
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117122413	117122413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF3	NM_001542	exon11	c.C2995T	p.R999C	TGGAGCGGGACAC	.	121.0	56.0	71.0	0.0	.	92
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133814256	133814256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF9B	NM_014987	exon3	c.G268T	p.A90S	GACTGGCCCGGCC	.	148.0	39.0	74.0	0.0	.	68
IMPDH1	3614	ucsc.edu;bcgsc.ca	37	7	128041169	128041169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IMPDH1	NM_000883	exon6	c.A404G	p.D135G	GTCAGGTCCTGAG	.	70.0	6.0	46.0	0.0	.	230
INPP4B	8821	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	143043286	143043286	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	INPP4B	NM_003866	exon22	c.A2130G	p.G710G	CCGTCTTCCTGTT	.	76.0	19.0	178.0	2.0	.	228
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15507624	15507624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	JARID2	NM_004973	exon11	c.T2708A	p.L903Q	CCATCCTGCGTCA	.	155.0	47.0	71.0	0.0	.	228
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119914945	119914945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCND2	NM_012281	exon1	c.C259A	p.R87S	TTTGACCGTGACC	.	144.0	65.0	82.0	0.0	.	517
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26967658	26967658	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIAA0100	NM_014680	exon8	c.C810T	p.F270F	GAGAAGGAATAGG	.	372.0	127.0	251.0	0.0	.	93
KIF14	9928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200522769	200522769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF14	NM_014875	exon30	c.A4694G	p.H1565R	ACAATGTGAGTTA	.	316.0	36.0	352.0	2.0	.	140
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91477208	91477209	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF20B	NM_016195	exon10	c.1080_1081del	p.360_361del	AATATTACAGATT	.	317.0	50.0	613.0	0.0	.	93
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245772747	245772747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF26B	NM_018012	exon8	c.C1831G	p.L611V	GACCTGCTGTCGG	.	132.0	23.0	55.0	0.0	.	25
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143718192	143718192	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KYNU	NM_001199241	exon9	c.583-1G>A	.	GATTTAGGGGGAA	.	49.0	12.0	74.0	0.0	.	92
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52258056	52258056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LEO1	NM_138792	exon2	c.C704G	p.P235R	AGCTGTGGTTGTT	.	563.0	96.0	545.0	0.0	.	68
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28143356	28143356	+	Silent	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LNX2	NM_153371	exon3	c.T465G	p.T155T	TGCTTGAGTTCTA	.	136.0	68.0	290.0	0.0	.	228
LOC100499484	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	100057188	100057188	+	RNA	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	GCTTGTCAGCTTT	.	109.0	59.0	134.0	1.0	.	.
LPHN3	23284	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	62849309	62849309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LPHN3	NM_015236	exon16	c.G3020T	p.G1007V	GTTATGGAACAGA	.	192.0	100.0	260.0	0.0	.	508
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57571304	57571304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP1	NM_002332	exon26	c.G4291T	p.G1431C	GAGACCGGCTCTG	.	180.0	57.0	73.0	1.0	.	596
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12291266	12291266	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP6	NM_002336	exon16	c.A3600G	p.Q1200Q	GTATTCTTGAAGG	.	186.0	61.0	258.0	0.0	.	661
LTBP2	4053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74995708	74995708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LTBP2	NM_000428	exon11	c.G2105T	p.G702V	GCTTTGCCCACGC	.	190.0	80.0	97.0	1.0	.	92
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	34266279	34266279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LYZL6	NM_020426	exon1	c.G82A	p.A28T	CCTGGGCCAAGTC	.	59.0	28.0	84.0	0.0	.	90
MAP3K7CL	56911	broad.mit.edu;bcgsc.ca	37	21	30532281	30532281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_020152	exon8	c.A452G	p.D151G	GTCATGACTCCGA	.	121.0	5.0	169.0	0.0	.	.
MEOX2	4223	broad.mit.edu;bcgsc.ca	37	7	15725858	15725858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MEOX2	NM_005924	exon1	c.A170G	p.E57G	ATGCCCTCTTCGT	.	153.0	9.0	64.0	0.0	.	515
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55470647	55470647	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MTIF2	NM_002453	exon12	c.1469delC	p.S490X	AGAATTGATCTCT	.	618.0	80.0	793.0	0.0	.	91
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9084989	9084989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MUC16	NM_024690	exon1	c.A6826G	p.T2276A	AAATGGTTCTAAA	.	48.0	4.0	136.0	0.0	.	566
NAP1L3	4675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	92927476	92927476	+	Silent	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NAP1L3	NM_004538	exon1	c.A828T	p.A276A	TCTTACTGCAGCC	.	231.0	166.0	133.0	0.0	.	131
NAT10	55226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34137375	34137375	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NAT10	NM_024662	exon6	c.G501A	p.V167V	GGATGTGCATTCC	.	215.0	63.0	311.0	0.0	.	92
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	173996955	173996955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NLGN1	NM_014932	exon6	c.1164delC	p.N388fs	AGTGAACCAAGGG	.	133.0	38.0	233.0	0.0	.	231
NPHP3	27031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132407637	132407637	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NPHP3	NM_153240	exon21	c.A2982G	p.V994V	CACGTATACACTT	.	376.0	66.0	337.0	1.0	.	91
OLFM1	10439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138011770	138011770	+	Missense_Mutation	SNP	G	G	A	rs1130517	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OLFM1	NM_014279	exon6	c.G1150A	p.A384T	CGCAGCGCCGGGG	.	55.0	32.0	35.0	0.0	.	70
OLFML2A	169611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127563918	127563918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OLFML2A	NM_182487	exon5	c.C895A	p.Q299K	GGCAAGCAGGAGG	.	116.0	59.0	96.0	2.0	.	68
OR10A3	26496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7960259	7960259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR10A3	NM_001003745	exon1	c.C809G	p.T270S	TTCTTGGTTTCGG	.	210.0	72.0	335.0	0.0	.	69
OR10J5	127385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159505721	159505721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR10J5	NM_001004469	exon1	c.C77A	p.T26N	AAGAGGGTTATCT	.	152.0	31.0	118.0	0.0	.	71
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29395051	29395051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR11A1	NM_013937	exon1	c.G368A	p.R123H	AGGTAGCGGTCAT	.	94.0	34.0	77.0	0.0	.	23
OR4K14	122740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20483095	20483095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR4K14	NM_001004712	exon1	c.C258A	p.F86L	ACTAAGGAAATCC	.	116.0	29.0	102.0	0.0	.	115
OR6C65	403282	hgsc.bcm.edu;bcgsc.ca	37	12	55794609	55794610	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR6C65	NM_001005518	exon1	c.297_298insT	p.V99fs	CCAAGTATTTTTT	.	140.0	45.0	122.0	0.0	.	68
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	55927260	55927260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR8K5	NM_001004058	exon1	c.C534A	p.Y178X	ATCACAGTAAAAA	.	107.0	28.0	141.0	0.0	.	72
OTUD7B	56957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149916120	149916120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OTUD7B	NM_020205	exon12	c.G2168T	p.G723V	GGTAGGCCCCCGA	.	51.0	22.0	43.0	0.0	.	502
PAGE2	203569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	55117891	55117891	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PAGE2	NM_207339	exon4	c.319+1G>A	.	AAGCAGGTTTGTT	.	334.0	104.0	321.0	0.0	.	92
PARP2	10038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20820469	20820469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PARP2	NM_005484	exon7	c.A602G	p.Y201C	GAAAATATGATAT	.	99.0	27.0	72.0	0.0	.	661
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134246024	134246024	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PCBD2	NM_032151	exon2	c.85-1G>C	.	TTCATAGTCATCA	.	125.0	23.0	103.0	0.0	.	90
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47850032	47850032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PCNT	NM_006031	exon36	c.C7799T	p.A2600V	TCCTGGCGGCGGA	.	315.0	55.0	166.0	0.0	.	141
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	33840383	33840383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDCD6IP	NM_013374	exon1	c.G163A	p.G55S	GCAGTCGGTCGTC	.	41.0	26.0	14.0	0.0	.	228
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	58882174	58882174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE4D	NM_006203	exon1	c.A28G	p.R10G	GCCTTCTAAAGGG	.	166.0	78.0	221.0	0.0	.	226
PDE4D	5144	ucsc.edu;bcgsc.ca	37	5	58511778	58511778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE4D	NM_001104631	exon2	c.G472A	p.G158S	ATGTGCCATTGTC	.	31.0	4.0	58.0	0.0	.	226
PDGFRB	5159	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149503839	149503839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDGFRB	NM_002609	exon14	c.A1997G	p.N666S	AACAGGTTGACCA	.	235.0	10.0	118.0	1.0	.	1499
PDZD8	118987	ucsc.edu;bcgsc.ca	37	10	119078452	119078452	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDZD8	NM_173791	exon3	c.A1029G	p.A343A	AACATTTGCCTCT	.	45.0	4.0	123.0	0.0	.	90
PELP1	27043	broad.mit.edu;bcgsc.ca	37	17	4594688	4594688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PELP1	NM_014389	exon2	c.G299T	p.S100I	ATGGAACTGAGAC	.	93.0	6.0	100.0	1.0	.	24
PER2	8864	bcgsc.ca;mdanderson.org	37	2	239167286	239167286	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PER2	NM_022817	exon16	c.1628-1G>A	.	GCATTTCTGAAGG	.	121.0	43.0	86.0	1.0	.	154
PIGQ	9091	broad.mit.edu;ucsc.edu	37	16	628459	628459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGQ	NM_148920	exon5	c.C1023G	p.D341E	ACTGGACCAGGTG	.	59.0	7.0	63.0	0.0	.	226
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51732778	51732778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1	NM_170724	exon48	c.T7616C	p.I2539T	GCAAGAATGTGAC	.	126.0	39.0	155.0	0.0	.	603
PKHD1L1	93035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	110457487	110457487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon38	c.A5389C	p.N1797H	GAAAACAACATCA	.	453.0	28.0	217.0	1.0	.	145
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110460575	110460575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon39	c.G5980C	p.V1994L	ACAGTTGTATTTG	.	232.0	13.0	103.0	0.0	.	145
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128806961	128806961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLK4	NM_014264	exon5	c.C436T	p.R146C	CTGACTCGTAATA	.	327.0	114.0	223.0	0.0	.	333
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38158220	38158220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POSTN	NM_006475	exon9	c.G1129A	p.A377T	TTCCAGCCAGCTC	.	86.0	18.0	100.0	0.0	.	516
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39504010	39504010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POU6F2	NM_007252	exon11	c.G1801T	p.G601W	TTTATCGGGAGTG	.	81.0	12.0	81.0	2.0	.	90
PPM1H	57460	ucsc.edu;bcgsc.ca	37	12	63087751	63087751	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PPM1H	NM_020700	exon7	c.T1102C	p.L368L	ACTTCAAGTCCTC	.	54.0	6.0	69.0	0.0	.	637
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	61997206	61997206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PRKCH	NM_006255	exon12	c.G1654T	p.A552S	GGTCACGCGCCTT	.	163.0	26.0	155.0	0.0	.	1063
PTGIS	5740	ucsc.edu;bcgsc.ca	37	20	48140754	48140754	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTGIS	NM_000961	exon6	c.T696C	p.S232S	TTTGACACTGCAC	.	49.0	4.0	37.0	0.0	.	93
PTPRM	5797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8088802	8088802	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTPRM	NM_001105244	exon11	c.C1809T	p.T603T	CAATACCGTGACA	.	67.0	29.0	123.0	1.0	.	228
RBM34	23029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235318339	235318339	+	Missense_Mutation	SNP	C	C	A	rs200657743	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RBM34	NM_001161533	exon4	c.G454T	p.V152L	CTGCTACTTTAAC	.	694.0	308.0	662.0	1.0	.	46
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111678241	111678241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	REV3L	NM_002912	exon18	c.A7160T	p.H2387L	ATTTCATGAAAAA	.	182.0	52.0	260.0	0.0	.	294
RFWD2	64326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175956209	175956209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RFWD2	NM_022457	exon18	c.A2003G	p.Y668C	CCTTTATAGTACA	.	202.0	45.0	179.0	0.0	.	659
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95091309	95091309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RHOBTB3	NM_014899	exon6	c.A892G	p.I298V	TCCAGTATCATCC	.	167.0	28.0	271.0	0.0	.	228
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130927134	130927134	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	RIMBP2,brain,glioma,+1	RIMBP2	NM_015347	exon8	c.C712A	p.R238R	CCAACCGCGACTC	.	428.0	151.0	217.0	0.0	.	142
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137320977	137320977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RXRA	NM_002957	exon7	c.T934G	p.S312A	ATCGCCTCCTTCT	.	259.0	131.0	161.0	2.0	.	188
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77844990	77844990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SAMD15	NM_001010860	exon1	c.C1229T	p.T410I	ATGAAACCAAACC	.	417.0	84.0	295.0	0.0	.	90
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166211045	166211045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SCN2A	NM_001040143	exon16	c.A3263G	p.D1088G	TCGTGGATGAAAG	.	305.0	95.0	309.0	0.0	.	142
SDK2	54549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71503642	71503642	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SDK2	NM_001144952	exon2	c.C159T	p.S53S	TGGCCAGCTGCCC	.	139.0	61.0	99.0	1.0	.	24
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70507758	70507758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SHANK2	NM_133266	exon1	c.G115T	p.V39L	GGACCACCGTCTT	.	304.0	86.0	152.0	1.0	.	94
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	56920341	56920341	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC12A3	NM_001126108	exon16	c.1991delC	p.T664fs	TGGGCACCTTCAC	.	74.0	38.0	46.0	0.0	.	155
SLC5A7	60482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108622601	108622601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC5A7	NM_021815	exon7	c.G838A	p.G280R	GCTTTCGGGTGCC	.	156.0	59.0	101.0	0.0	.	93
SNX10	29887	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	26412162	26412162	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SNX10	NM_001199835	exon7	c.T576A	p.C192X	TGGATGTAAAGTA	.	377.0	114.0	321.0	1.0	.	226
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	80911451	80911451	+	Silent	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPRY2	NM_005842	exon2	c.C390G	p.S130S	TTCAGAGGAGCTG	.	183.0	26.0	87.0	0.0	.	659
SRSF7	6432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	38976737	38976737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SRSF7	NM_001195446	exon3	c.A320G	p.Y107C	CACTCATAGCATC	.	528.0	188.0	282.0	1.0	.	226
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64900941	64900941	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SYVN1	NM_172230	exon2	c.A132G	p.A44A	ACTCACTGCCATG	.	82.0	28.0	44.0	0.0	.	91
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	179623394	179623394	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TDRD5	NM_001199085	exon14	c.T2219G	p.L740X	AGCCATTAAAGGA	.	264.0	24.0	283.0	0.0	.	94
TGFB1	7040	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	41850671	41850671	+	Silent	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TGFB1	NM_000660	exon3	c.G615T	p.R205R	CCACTGCCGCACA	.	71.0	19.0	57.0	0.0	.	522
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43571883	43571883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TGM7	NM_052955	exon10	c.G1618A	p.G540S	TACCACCCCCATG	.	69.0	21.0	32.0	0.0	.	92
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52255499	52255499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TLR9	NM_017442	exon2	c.G2833A	p.G945S	AGAGACCACTGAC	.	54.0	15.0	20.0	0.0	.	587
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577150	7577150	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	TP53,colon,carcinoma,0	TP53	NM_000546	exon8	c.788delA	p.N263fs	AGTAGATTACCAC	.	70.0	33.0	66.0	0.0	.	70225
TRIOBP	11078	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	38119347	38119347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRIOBP	NM_001039141	exon7	c.G784A	p.A262T	TCTCCTGCCCAAA	.	122.0	30.0	62.0	0.0	.	136
TRPA1	8989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72948615	72948615	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRPA1	NM_007332	exon21	c.C2463A	p.P821P	AAACAAGGGCAGC	.	316.0	49.0	294.0	2.0	.	230
TTC30A	92104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178483360	178483360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTC30A	NM_152275	exon1	c.G70C	p.D24H	GGGCATCGCGGAT	.	54.0	9.0	30.0	0.0	.	90
TTLL13	440307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90799374	90799374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTLL13	NM_001029964	exon6	c.T550A	p.Y184N	CATAGCTATGGGG	.	70.0	29.0	51.0	0.0	.	44
TTPA	7274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	63973866	63973866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTPA	NM_000370	exon5	c.A782G	p.N261S	ATAAAATTTGTCC	.	357.0	69.0	185.0	0.0	.	90
TYW1	55253	broad.mit.edu;bcgsc.ca	37	7	66582604	66582604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TYW1	NM_018264	exon13	c.A1697G	p.K566R	CAGTCAAGGTAAG	.	75.0	6.0	132.0	0.0	.	91
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70455333	70455333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UGT2A1	NM_001252274	exon7	c.C1839A	p.H613Q	ATCATGGTGAATT	.	289.0	139.0	328.0	1.0	.	92
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144758707	144758707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UTRN	NM_007124	exon10	c.A1066G	p.M356V	GCTTTTATGATGG	.	56.0	22.0	64.0	0.0	.	95
VAMP1	6843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575091	6575091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VAMP1	NM_014231	exon3	c.G205C	p.A69P	CATCAGCTCGGTC	.	240.0	90.0	124.0	0.0	.	90
VWDE	221806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12384011	12384011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VWDE	NM_001135924	exon20	c.A3971C	p.N1324T	TGGCAGTTAGAAC	.	203.0	33.0	297.0	0.0	.	68
ZFYVE9	9372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52705203	52705203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFYVE9	NM_007323	exon4	c.G2114T	p.C705F	CAAATTGCATGAA	.	87.0	15.0	135.0	2.0	.	230
ZNF276	92822	broad.mit.edu;bcgsc.ca	37	16	89804389	89804389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF276	NM_001113525	exon11	c.A1580G	p.E527G	GGTGTGAGGTCTG	.	98.0	6.0	79.0	0.0	.	90
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53747099	53747099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF677	NM_182609	exon4	c.G67C	p.E23Q	GGCACTCCCACTC	.	134.0	45.0	153.0	0.0	.	91
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927076	23927076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_138286	exon4	c.A1276G	p.K426E	CACATTTTTCACA	.	134.0	47.0	161.0	0.0	.	.
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22942280	22942281	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF99	NM_001080409	exon4	c.431_432insA	p.I144fs	TGAAATATTTTTC	.	158.0	51.0	320.0	0.0	.	24
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	1371531	1371532	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	p.D426I	GGTGGGGATATTG	.	177.0	63.0	518.0	1.0	.	.