Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA10 10349 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 67183861 67183861 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ABCA10 NM_080282 exon20 c.T2291A p.F764Y TTTAAGAAGCGAA . 162.0 35.0 147.0 1.0 . 93 ACAD11 84129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 132337601 132337601 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACAD11 NM_032169 exon11 c.G1291A p.E431K GACCCTCGACTTT . 238.0 63.0 202.0 0.0 . 91 ACRV1 56 hgsc.bcm.edu;bcgsc.ca 37 11 125542541 125542541 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACRV1 NM_001612 exon4 c.A745G p.T249A TCCTCGTTCCATG . 88.0 4.0 76.0 0.0 . 90 ADAMTS1 9510 hgsc.bcm.edu;bcgsc.ca 37 21 28212774 28212774 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ADAMTS1 NM_006988 exon5 c.T1486C p.S496P GTTTGGAGTCCTC . 70.0 4.0 64.0 0.0 . 272 ADAMTS6 11174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 64748641 64748641 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ADAMTS6 NM_197941 exon5 c.G736A p.V246M TGCTCACTGATCT . 324.0 58.0 251.0 0.0 . 226 AGL 178 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 100340249 100340249 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . AGL NM_000644 exon8 c.G965A p.R322K AAAATAGGCGAGT . 64.0 9.0 57.0 1.0 . 92 AMPD3 272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10503698 10503698 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . AMPD3 NM_000480 exon4 c.G542T p.R181L ACCACCGCTTCCC . 69.0 10.0 51.0 0.0 . 291 ANXA13 312 hgsc.bcm.edu;broad.mit.edu 37 8 124705521 124705521 + Nonsense_Mutation SNP C C T rs146521013 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ANXA13 NM_001003954 exon9 c.G681A p.W227X AGTGCCCCAGCGG . 166.0 9.0 90.0 0.0 C|1.000;A|0.000 93 AQP5 362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50357929 50357929 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . AQP5 NM_001651 exon3 c.G583C p.V195L GCGGTGGTCATGA . 107.0 15.0 82.0 0.0 . 90 ARID1B 57492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 157522125 157522125 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ARID1B NM_020732 exon18 c.C4397A p.A1466E TGTGGGCAGCACG . 126.0 16.0 69.0 0.0 . 154 ATAD2B 54454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 23980414 23980414 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ATAD2B NM_017552 exon25 c.C3952A p.P1318T TTTCTGGTTTTTC . 219.0 53.0 186.0 0.0 . 68 ATP11B 23200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 182566270 182566270 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ATP11B NM_014616 exon10 c.C776T p.A259V GTGTTGCGGTATA . 232.0 59.0 190.0 0.0 . 93 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 32613893 32613893 + Frame_Shift_Del DEL A A - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . BIRC6 NM_016252 exon4 c.721delA p.K241fs CTCAAGAAAATAA . 173.0 30.0 171.0 0.0 . 233 BMP5 653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 55639030 55639030 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . BMP5 NM_021073 exon4 c.A844G p.N282D TTACGTTGATACT . 230.0 32.0 175.0 0.0 . 516 BTBD6 90135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105716119 105716119 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . BTBD6 NM_033271 exon5 c.G568A p.V190I GCCTGCGTCCTGC . 99.0 31.0 50.0 0.0 . 90 C11orf74 119710 hgsc.bcm.edu;bcgsc.ca 37 11 36631742 36631742 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . C11orf74 NM_138787 exon2 c.G89G p.G30G ATGAGCAAACATA . 81.0 4.0 57.0 0.0 . 68 C2orf44 80304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24261849 24261849 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . C2orf44 NM_025203 exon2 c.G516A p.V172V TGCCACCACCAGC . 83.0 21.0 77.0 0.0 . 154 CACNA1B 774 ucsc.edu;mdanderson.org 37 9 140991051 140991051 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CACNA1B NM_001243812 exon36 c.A5210G p.D1737G AATACGACCCGGC . 83.0 8.0 69.0 2.0 . 138 CACNB1 782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37341067 37341067 + Silent SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CACNB1 NM_199247 exon8 c.C834A p.I278I CACCAGGATGATG . 131.0 23.0 89.0 0.0 . 154 CASR 846 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 121980604 121980604 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CASR NM_001178065 exon4 c.A722T p.E241V TCAGTGAACTCAT . 221.0 20.0 182.0 0.0 . 97 CELSR1 9620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 46794440 46794440 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CELSR1 NM_014246 exon11 c.G5507T p.G1836V CGGAATCCACGGC . 71.0 22.0 97.0 0.0 . 525 CLEC18B 497190 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 74452060 74452060 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CLEC18B NM_001011880 exon3 c.C353G p.A118G AAGGACGCCAAGC . 300.0 79.0 403.0 2.0 . 90 CNTLN 54875 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 17409335 17409335 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CNTLN NM_017738 exon16 c.T2660C p.I887T CAATTATTGTAGA . 295.0 20.0 234.0 1.0 . 91 COL4A4 1286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228012135 228012135 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . COL4A4 NM_000092 exon2 c.G65A p.G22D CAGGGACCTGTGG . 56.0 8.0 62.0 0.0 . 142 COPS5 10987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 67974167 67974167 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . COPS5 NM_006837 exon1 c.C65T p.A22V CTCTGAGCTTCCT . 92.0 7.0 71.0 0.0 . 660 CPNE4 131034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 131624109 131624109 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CPNE4 NM_130808 exon2 c.A179T p.E60V CCTACCTCAAACC . 133.0 27.0 126.0 0.0 . 92 CPSF1 29894 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 8 145634528 145634528 + Nonsense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CPSF1 NM_013291 exon2 c.C15A p.Y5X CTGTTTGTACACG . 30.0 8.0 42.0 0.0 . 91 CRISPLD1 83690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 75927121 75927121 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CRISPLD1 NM_031461 exon6 c.G701A p.G234D GAGGGGGCTGTAG . 143.0 31.0 141.0 0.0 . 91 CSN3 1448 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 71115098 71115098 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CSN3 NM_005212 exon4 c.T471C p.T157T AGTCACTCCAGAA . 115.0 12.0 77.0 1.0 . 93 CUL1 8454 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 148456419 148456422 + Frame_Shift_Del DEL CTGT CTGT - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 CTGT CTGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CUL1 NM_003592 exon5 c.507_510del p.169_170del GAGAGACTGTCTG . 184.0 29.0 125.0 0.0 . 226 DDX56 54606 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44612257 44612257 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DDX56 NM_001257189 exon4 c.G470T p.R157L GAGTCACGAAGTT . 209.0 51.0 133.0 0.0 . 227 DEFB113 245927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 49936572 49936572 + Nonsense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DEFB113 NM_001037729 exon2 c.A67T p.K23X TTTTTTTCTGTGG . 97.0 21.0 99.0 0.0 . 90 DEFB128 245939 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 168643 168643 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DEFB128 NM_001037732 exon2 c.G166A p.D56N CTTCATCATTAGC . 459.0 108.0 321.0 2.0 . 135 DICER1 23405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95556981 95556981 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DICER1 NM_030621 exon28 c.G5623A p.D1875N TCCCGTCGTAAGT . 326.0 118.0 211.0 0.0 . 961 DNAH14 127602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 225525167 225525167 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DNAH14 NM_001373 exon65 c.C10001T p.A3334V AAAATGCTATGAA . 331.0 59.0 283.0 0.0 . 23 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 84932627 84932627 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DNAH6 NM_001370 exon52 c.C8483A p.A2828E CATCAGCAAAGCA . 105.0 19.0 65.0 0.0 . 69 DOK5 55816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 53226977 53226977 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DOK5 NM_018431 exon6 c.A650C p.E217A ACGGGGAGGCCAT . 171.0 20.0 143.0 0.0 . 227 DSE 29940 hgsc.bcm.edu;broad.mit.edu 37 6 116757465 116757465 + Missense_Mutation SNP G G C rs141851816 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DSE NM_001080976 exon6 c.G1834C p.G612R AGAGATGGTCTCT . 135.0 6.0 52.0 0.0 G|1.000;A|0.000 91 DYNC2H1 79659 hgsc.bcm.edu;bcgsc.ca 37 11 103027464 103027464 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DYNC2H1 NM_001377 exon26 c.A4092G p.E1364E AAAAGAACAGACA . 81.0 4.0 67.0 0.0 . 68 ECE1 1889 broad.mit.edu;bcgsc.ca 37 1 21599363 21599363 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ECE1 NM_001397 exon4 c.A322G p.T108A AGCTGGTCACTGA . 165.0 7.0 131.0 2.0 . 93 EPPK1 83481 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 8 144940354 144940354 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . EPPK1 NM_031308 exon1 c.C7068T p.R2356R GGGCACGCGGTGG . 22.0 10.0 23.0 0.0 . 25 ERCC4 2072 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 14041704 14041704 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ERCC4 NM_005236 exon11 c.T2251C p.Y751H TCCCGCTACTACA . 85.0 33.0 82.0 1.0 . 665 FAIM2 23017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 50281167 50281167 + Splice_Site SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAIM2 NM_012306 exon12 c.801+2T>A . ACACTCACCAATG . 47.0 10.0 32.0 0.0 . 230 FAM208A 23272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 56680996 56680996 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001112736 exon14 c.C1769T p.S590L GGAGCTGAGTATA . 241.0 31.0 201.0 0.0 . . FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92616495 92616495 + Silent SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAT3 NM_001008781 exon23 c.C12873A p.A4291A CCCCGCCGTGTCA . 25.0 10.0 36.0 0.0 . 73 FATE1 89885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 150884642 150884642 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FATE1 NM_033085 exon1 c.A51G p.A17A CCTGGCAGAAGAA . 146.0 39.0 175.0 0.0 . 131 FCAMR 83953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207133090 207133090 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FCAMR NM_001170631 exon7 c.A1507G p.M503V CCAGCATGGTAGA . 88.0 23.0 93.0 0.0 . 91 FEV 54738 hgsc.bcm.edu;broad.mit.edu 37 2 219849754 219849754 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FEV NM_017521 exon1 c.A44G p.Y15C GGCAGGTACATGT . 73.0 4.0 48.0 0.0 . 846 GABRQ 55879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 151815446 151815446 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GABRQ NM_018558 exon4 c.A344C p.K115T CTTGGAAAGATTC . 149.0 61.0 179.0 0.0 . 133 GBF1 8729 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 104125298 104125298 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GBF1 NM_001199378 exon18 c.A2251G p.M751V AAGAAGATGATTG . 117.0 6.0 131.0 0.0 . 91 GFM2 84340 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 74037421 74037421 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GFM2 NM_032380 exon11 c.A863G p.D288G TCATCATCCAAAT . 420.0 97.0 327.0 1.0 . 90 GLA 2717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100658874 100658874 + Silent SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GLA NM_000169 exon2 c.C294A p.P98P TCTTTGGGGAGCC . 99.0 36.0 135.0 0.0 . 130 GOLGA2 2801 hgsc.bcm.edu;mdanderson.org 37 9 131020812 131020812 + Missense_Mutation SNP C C A rs143073995 byfrequency TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GOLGA2 NM_004486 exon21 c.G2130T p.E710D CTCCTCCTCCTCA . 42.0 8.0 32.0 0.0 C|0.990;A|0.010 91 GPR132 29933 hgsc.bcm.edu;bcgsc.ca 37 14 105517686 105517686 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GPR132 NM_013345 exon4 c.T788A p.L263H TTGACGAGGAGAA . 193.0 41.0 59.0 0.0 . 92 GPR132 29933 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 105517685 105517686 + Frame_Shift_Ins INS - - T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GPR132 NM_013345 exon4 c.789_790insA p.L263fs TTTGACGAGGAGA . 193.0 39.0 59.0 0.0 . 92 GRAMD1B 57476 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 123489856 123489856 + Frame_Shift_Del DEL C C - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GRAMD1B NM_020716 exon19 c.2051delC p.S684fs TAGAGTCCCAACA . 51.0 14.0 50.0 0.0 . 69 GRM3 2913 broad.mit.edu;bcgsc.ca 37 7 86469096 86469096 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GRM3 NM_000840 exon4 c.T2266C p.F756L TACGCCTTCAAAA . 135.0 6.0 86.0 1.0 . 528 HIST1H4K 8362 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 27799271 27799271 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HIST1H4K NM_003541 exon1 c.G35T p.G12V CCTTTGCCAAGAC . 317.0 53.0 275.0 1.0 . 90 HPS1 3257 hgsc.bcm.edu;broad.mit.edu 37 10 100179909 100179909 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HPS1 NM_000195 exon18 c.T1750C p.S584P TCAGAGACCAGAC . 75.0 4.0 69.0 0.0 . 91 HRG 3273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 186383833 186383833 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HRG NM_000412 exon1 c.A13G p.I5V GCACTCATTGCAG . 111.0 26.0 106.0 0.0 . 91 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 22159859 22159872 + Frame_Shift_Del DEL AAGTAGGGCACCAC AAGTAGGGCACCAC - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 AAGTAGGGCACCAC AAGTAGGGCACCAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HSPG2 NM_005529 exon80 c.10984_10997del p.3662_3666del TGCGTGAAGTAGG . 108.0 10.0 85.0 0.0 . 141 IFT172 26160 hgsc.bcm.edu;bcgsc.ca 37 2 27679434 27679434 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IFT172 NM_015662 exon30 c.A3315G p.R1105R AAGCAGTCTAACT . 81.0 4.0 74.0 0.0 . 154 IGDCC3 9543 broad.mit.edu;ucsc.edu;mdanderson.org 37 15 65621829 65621829 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IGDCC3 NM_004884 exon13 c.C2104T p.R702W GGCCCCGCTGTCC . 39.0 6.0 28.0 1.0 . 93 IKBKB 3551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 42176090 42176090 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IKBKB NM_001556 exon13 c.C1261G p.L421V AGGAATCTCGCCT . 77.0 12.0 100.0 0.0 . 1164 IL1F10 84639 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 113831957 113831957 + Silent SNP G G T rs199770962 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IL1F10 NM_173161 exon3 c.G84T p.L28L GCTGCTGGTGGGA . 140.0 11.0 135.0 0.0 G|0.999;T|0.001 91 ITGA7 3679 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56088716 56088716 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ITGA7 NM_001144996 exon15 c.G2054A p.G685E GGCTGCCCACTCA . 61.0 6.0 49.0 0.0 . 229 JAK1 3716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 65335078 65335078 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . JAK1 NM_002227 exon6 c.A563T p.E188V AGACACTCGTTCT . 123.0 35.0 100.0 0.0 . 3900 KCND1 3750 hgsc.bcm.edu;bcgsc.ca 37 X 48823420 48823420 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KCND1 NM_004979 exon2 c.A1215G p.P405P AATGACTGGCACA . 88.0 6.0 82.0 0.0 . 133 KCNK9 51305 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 140630800 140630800 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KCNK9 NM_016601 exon2 c.C826T p.P276S CCTCAGGGATGTG . 33.0 8.0 44.0 1.0 . 93 KDM2A 22992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66982895 66982895 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KDM2A NM_012308 exon7 c.A571T p.M191L TTGGAGATGCAGT . 81.0 18.0 66.0 0.0 . 661 KIRREL 55243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158061246 158061246 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KIRREL,NS,carcinoma,0 KIRREL NM_018240 exon11 c.C1371T p.T457T GCTCACCATCAAC . 64.0 12.0 57.0 0.0 . 91 KRT86 3892 broad.mit.edu;ucsc.edu;mdanderson.org 37 12 52699516 52699516 + Nonsense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KRT86 NM_002284 exon6 c.G970T p.E324X ATCAACGAGCTGA . 127.0 24.0 93.0 1.0 . 91 KRTAP29-1 100533177 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 17 39459053 39459053 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001257309 exon1 c.C51T p.P17P GATGGTGGGCACA . 58.0 13.0 57.0 0.0 . . LCE1E 353135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152759984 152759984 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LCE1E NM_178353 exon2 c.C209A p.S70Y GCAGCTCTGGGGG . 95.0 46.0 134.0 0.0 . 90 LCT 3938 hgsc.bcm.edu;bcgsc.ca 37 2 136566972 136566972 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LCT NM_002299 exon8 c.G2945A p.R982Q AAAATCCGAGACC . 85.0 5.0 68.0 0.0 . 101 LOXL4 84171 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 100013493 100013493 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LOXL4 NM_032211 exon11 c.G1652A p.R551H AGCGGGCGGTCCT . 37.0 5.0 39.0 0.0 . 230 LPPR3 0 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 814544 814544 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_024888 exon6 c.T805C p.F269L TGGCAAAGGCGAA . 32.0 4.0 32.0 0.0 . . LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57577928 57577928 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LRP1 NM_002332 exon37 c.C5990T p.S1997F ATGGCTCCTTCCG . 104.0 12.0 74.0 0.0 . 596 LRRC46 90506 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 45914305 45914305 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LRRC46 NM_033413 exon8 c.C785T p.P262L CAGTCCCTGAGGC . 114.0 6.0 86.0 0.0 . 91 LTV1 84946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 144184607 144184607 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LTV1 NM_032860 exon11 c.A1371G p.R457R GAAAAGAAGGCAA . 260.0 77.0 201.0 0.0 . 91 MAP4K5 11183 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 50923302 50923302 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MAP4K5 NM_006575 exon14 c.T947C p.I316T CGAATGATTGCAT . 127.0 7.0 64.0 0.0 . 546 MICAL3 57553 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 18299504 18299504 + Silent SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MICAL3 NM_015241 exon27 c.C5397G p.L1799L GCTGGAGAGGTCT . 31.0 14.0 23.0 1.0 . 68 MORC1 27136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 108723940 108723940 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MORC1 NM_014429 exon19 c.G1990T p.V664F GTTTGACATTTTC . 119.0 25.0 108.0 0.0 . 98 MS4A6A 64231 hgsc.bcm.edu;bcgsc.ca 37 11 59947379 59947379 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MS4A6A NM_001247999 exon4 c.T291C p.A97A GAAGGAAGCAGAT . 121.0 5.0 95.0 0.0 . 90 MSRB2 22921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 23393130 23393130 + Missense_Mutation SNP C C G rs201493683 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MSRB2 NM_012228 exon2 c.C176G p.T59S AACTAACCCCGGA . 117.0 25.0 101.0 0.0 C|0.999;T|0.001 90 MUC4 4585 hgsc.bcm.edu;broad.mit.edu 37 3 195511811 195511811 + Missense_Mutation SNP G G T rs71291864 bycluster;byfrequency TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MUC4 NM_018406 exon2 c.C6640A p.P2214T AGGAAGGGCTGGT . 118.0 6.0 139.0 0.0 CGT|0.250;GGC|0.250;GGCT|0.250;TGTC|0.250 90 MXRA5 25878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 3241431 3241431 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MXRA5 NM_015419 exon5 c.T2295A p.F765L AGATTCAAACACT . 210.0 81.0 280.0 0.0 . 136 MYCBPAP 84073 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48603556 48603556 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MYCBPAP NM_032133 exon14 c.C2226T p.S742S GGACAGCACCAAG . 65.0 22.0 55.0 0.0 . 230 MYH10 4628 hgsc.bcm.edu;bcgsc.ca 37 17 8480586 8480586 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MYH10 NM_005964 exon5 c.T601C p.S201P TATGTGAAGAAGC . 87.0 4.0 89.0 0.0 . 92 NCAM1 4684 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 113085206 113085206 + Silent SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NCAM1 NM_001242608 exon9 c.T1032A p.S344S GACTTCTACCCGG . 112.0 11.0 81.0 0.0 . 23 NXPE3 91775 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 101540640 101540640 + Missense_Mutation SNP A A G rs200530322 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_145037 exon8 c.A1522G p.I508V GACACCATCCTTC . 156.0 42.0 141.0 1.0 A|1.000;G|0.000 . OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 228511085 228511085 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OBSCN NM_001271223 exon67 c.A18301G p.S6101G CCTGTGAGCTTTG . 122.0 5.0 90.0 0.0 . 403 ODF2 4957 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 131256869 131256872 + Frame_Shift_Del DEL TGAG TGAG - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 TGAG TGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ODF2 NM_153435 exon17 c.2025_2028del p.675_676del GCTGGCTGAGTGC . 102.0 22.0 63.0 0.0 . 69 OPCML 4978 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 132527021 132527021 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OPCML NM_002545 exon2 c.A361T p.N121Y GATGATTGTCTGT . 243.0 54.0 175.0 0.0 . 93 OPLAH 26873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 145112137 145112137 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OPLAH NM_017570 exon11 c.G1509A p.L503L CATGCCCAGGGCC . 43.0 9.0 77.0 0.0 . 68 OR51G2 81282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4936238 4936238 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR51G2 NM_001005238 exon1 c.T656G p.I219S AAGAGGATGAGCA . 116.0 32.0 101.0 0.0 . 70 OR51I1 390063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5462447 5462447 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR51I1 NM_001005288 exon1 c.C298A p.L100M GGACCAGGCAAGC . 139.0 37.0 89.0 0.0 . 69 OR6B3 150681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 240984862 240984862 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR6B3 NM_173351 exon1 c.C628G p.P210A GGAGTGGAAACAC . 279.0 55.0 256.0 0.0 . 68 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 82389961 82389961 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PCLO NM_033026 exon24 c.T15282C p.S5094S CTGAAGAGAATGT . 508.0 113.0 390.0 0.0 . 29 PDCD4 27250 hgsc.bcm.edu;bcgsc.ca 37 10 112641040 112641040 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PDCD4 NM_014456 exon3 c.T93C p.A31A AAATGCTGGGACT . 91.0 4.0 92.0 0.0 . 291 PDIA5 10954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 122849447 122849447 + Silent SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PDIA5 NM_006810 exon11 c.C894A p.V298V CCTCGTCATGTTC . 121.0 26.0 113.0 0.0 . 91 PEG3 5178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57334962 57334962 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PEG3 NM_001146184 exon4 c.C480T p.F160F ACCACTGAAAGAA . 70.0 15.0 47.0 0.0 . 164 PHF11 51131 hgsc.bcm.edu;bcgsc.ca 37 13 50080776 50080776 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PHF11 NM_001040443 exon2 c.T100C p.F34L GGTGTCTTTCAGG . 54.0 4.0 45.0 0.0 . 90 PIK3R2 5296 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 18266738 18266738 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PIK3R2 NM_005027 exon2 c.C49T p.R17W TTCCGCCGGGAGC . 16.0 7.0 17.0 0.0 . 1311 PKP4 8502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 159481873 159481873 + Nonsense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PKP4 NM_001005476 exon7 c.C1087T p.Q363X ATGGAGCAATTCG . 268.0 48.0 223.0 0.0 . 97 PPP2R3C 55012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 35577440 35577440 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PPP2R3C NM_017917 exon5 c.A407T p.Q136L AAAAATTGCCTAA . 102.0 17.0 53.0 0.0 . 227 PTPRM 5797 hgsc.bcm.edu;bcgsc.ca 37 18 8384641 8384641 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PTPRM NM_001105244 exon30 c.A4001G p.E1334G TGGAAGAGGACAT . 128.0 6.0 94.0 0.0 . 228 PTPRQ 374462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 81014071 81014071 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001145026 exon29 c.T5012A p.I1671N TCTACATCATAGG . 177.0 35.0 165.0 0.0 . . RAB37 326624 ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72741039 72741039 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . RAB37 NM_001163989 exon7 c.C475G p.R159G GTGATCCGTTCCG . 150.0 38.0 122.0 2.0 . 230 RBMXL3 139804 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 114424946 114424946 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001145346 exon1 c.C942T p.A314A CGCTGCCCCTGTG . 130.0 11.0 144.0 0.0 . . SASH1 23328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 148846461 148846461 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SASH1 NM_015278 exon11 c.A1244G p.N415S TGACGAATCGCTC . 67.0 17.0 61.0 0.0 . 90 SCFD1 23256 hgsc.bcm.edu;bcgsc.ca 37 14 31107344 31107345 + Frame_Shift_Ins INS - - ACTAT novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SCFD1 NM_016106 exon5 c.326_327insACTAT p.Q109fs GAAATCAACTATA . 206.0 50.0 151.0 1.0 . 226 SCN11A 11280 hgsc.bcm.edu;bcgsc.ca 37 3 38921489 38921489 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SCN11A NM_014139 exon19 c.A3345G p.G1115G ATACTTTCCAAAT . 88.0 4.0 80.0 0.0 . 99 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135204112 135204112 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SETX NM_015046 exon10 c.T2873C p.I958T CTGTCTATCTGAG . 206.0 29.0 173.0 0.0 . 93 SLBP 7884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 1701341 1701341 + Missense_Mutation SNP G G C rs200085408 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLBP NM_006527 exon5 c.C429G p.N143K CCCATAGTTGATC . 264.0 49.0 195.0 0.0 G|0.999;C|0.001 90 SLC38A2 54407 hgsc.bcm.edu;bcgsc.ca 37 12 46756927 46756927 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLC38A2 NM_018976 exon13 c.A1056G p.E352E AACATGTTCTACA . 75.0 4.0 64.0 0.0 . 226 SLC50A1 55974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155110121 155110121 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLC50A1 NM_018845 exon4 c.G367A p.E123K AACCCTGAGGCCC . 97.0 28.0 68.0 0.0 . 69 SLC9C2 284525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 173476077 173476077 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_178527 exon25 c.T3143G p.I1048S ACAATGATAACAA . 184.0 38.0 169.0 0.0 . . SNAP29 9342 hgsc.bcm.edu;bcgsc.ca 37 22 21235343 21235343 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SNAP29 NM_004782 exon3 c.A441G p.K147K ATTGAAAGAAGCT . 84.0 4.0 101.0 0.0 . 278 SNAPC1 6617 hgsc.bcm.edu;bcgsc.ca 37 14 62233751 62233751 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SNAPC1 NM_003082 exon2 c.A286G p.K96E AAACAAAAGGTAA . 86.0 4.0 97.0 0.0 . 90 SNRK 54861 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 43344896 43344896 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SNRK NM_017719 exon3 c.G201T p.M67I ATGCATGAAACTA . 163.0 49.0 146.0 1.0 . 815 SOGA2 23255 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 8813094 8813094 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_015210 exon12 c.G2722C p.V908L AGCCTGGTCATGG . 156.0 14.0 135.0 0.0 . . SP4 6671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 21469601 21469601 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SP4 NM_003112 exon3 c.A818G p.N273S TAAACAACGTGGC . 174.0 44.0 130.0 0.0 . 95 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30750366 30750366 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SRCAP NM_006662 exon34 c.C9005G p.P3002R CGTCCCCACCCAA . 84.0 6.0 54.0 0.0 . 94 SULT1A2 6799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28606943 28606943 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SULT1A2 NM_001054 exon3 c.G202A p.E68K ACTTTTCCAGGTC . 121.0 47.0 99.0 0.0 . 90 TAF1 6872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70607151 70607151 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TAF1 NM_004606 exon15 c.A2327G p.H776R ATCTTCATAAGAT . 235.0 86.0 256.0 0.0 . 900 TBCD 6904 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80888501 80888501 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TBCD NM_005993 exon33 c.A3095G p.D1032G TTGAGGACAACCT . 107.0 23.0 83.0 1.0 . 22 TECTA 7007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 121058616 121058616 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TECTA NM_005422 exon20 c.C6075T p.T2025T CGTCACCGTCTTT . 89.0 24.0 93.0 0.0 . 225 TEK 7010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 27190548 27190548 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TEK NM_000459 exon10 c.C1349G p.A450G TGAATGCCCCAAA . 183.0 17.0 184.0 0.0 . 1584 TEN1 100134934 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 73996268 73996268 + Silent SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001113324 exon4 c.G297T p.G99G GGAGGGGATGAAC . 67.0 18.0 46.0 0.0 . . TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 78775891 78775891 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001098816 exon6 c.G385A p.V129M GACGCACGGGGTG . 48.0 12.0 45.0 0.0 . . TEX15 56154 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 30701385 30701385 + Nonsense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TEX15 NM_031271 exon1 c.C5149T p.R1717X AGCTTCGCAATGT . 91.0 30.0 99.0 1.0 . 97 TMC3 342125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81625157 81625157 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TMC3 NM_001080532 exon22 c.C2906A p.A969D TGAGGAGCCCGAC . 72.0 18.0 47.0 0.0 . 70 TMEM87A 25963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42556385 42556385 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TMEM87A NM_001110503 exon4 c.T308G p.L103W AAATACAACTCTA . 220.0 69.0 211.0 0.0 . 91 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578478 7578478 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 TP53,NS,carcinoma,-1 TP53 NM_000546 exon5 c.C452A p.P151H GGCGGGGGTGTGG . 68.0 17.0 61.0 0.0 . 70225 USP30 84749 hgsc.bcm.edu;bcgsc.ca 37 12 109519740 109519740 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . USP30 NM_032663 exon9 c.T783C p.G261G GTAGGGTCACCCA . 155.0 7.0 94.0 0.0 . 658 USP4 7375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49362451 49362451 + Missense_Mutation SNP C C A rs117411669 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . USP4 NM_199443 exon5 c.G509T p.R170L AGCTTCCGCATCT . 150.0 42.0 131.0 0.0 C|0.999;T|0.001 660 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 100829851 100829851 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . VPS13B NM_017890 exon45 c.A8256C p.Q2752H TGGTCAAGATGGA . 232.0 49.0 147.0 0.0 . 301 WDHD1 11169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 55467661 55467661 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WDHD1 NM_007086 exon9 c.G743A p.G248D ATACTACCTGCAG . 306.0 128.0 207.0 0.0 . 91 WDR1 9948 hgsc.bcm.edu;bcgsc.ca 37 4 10099482 10099482 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WDR1 NM_017491 exon5 c.T411C p.S137S CACAGAAGAGCCA . 92.0 4.0 57.0 0.0 . 48 WNK2 65268 hgsc.bcm.edu;broad.mit.edu 37 9 96021717 96021717 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WNK2 NM_006648 exon11 c.C2887A p.P963T ACGCTGCCCCCTC . 21.0 4.0 31.0 0.0 . 765 ZNF318 24149 broad.mit.edu;mdanderson.org 37 6 43325451 43325451 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF318 NM_014345 exon3 c.G601A p.G201S CAAGACCCCGAGA . 106.0 24.0 68.0 0.0 . 157 ZNF429 353088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 21720474 21720474 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF429 NM_001001415 exon4 c.A1619T p.E540V AATGTGAAGAATG . 42.0 10.0 32.0 0.0 . 516 ZNF507 22847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 32873386 32873386 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF507 NM_001136156 exon6 c.G2374C p.G792R CTGTGTGGGTATG . 196.0 37.0 178.0 0.0 . 230 ZNF541 84215 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 48047823 48047823 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF541 . . . . GAACCGCGGCCAC . 63.0 20.0 42.0 0.0 . 23