Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PFKFB3 5209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 6257194 6257194 + Silent SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TGTTCAACGTCGGGGAGTATC 0.577 15 43 ANXA7 310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 75148122 75148122 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TAGCATCGAAGTTGGCAGCTG 0.378 25 56 DLG5 9231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 79589994 79589994 + Missense_Mutation SNP T T A TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCATCAGCAATGCTTCCTTTG 0.542 33 86 GHITM 27069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 85901358 85901358 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCATCACGAAGAATCAATGGC 0.448 39 90 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu 37 11 1265832 1265832 + Silent SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAGAGACTGTCCACACCTCCA 0.652 89 272 KIAA1549L 25758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 33564683 33564683 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GAAATGCCCACTCTTCCAGCA 0.522 25 119 MS4A4A 51338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 60068530 60068530 + Splice_Site SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAAAAGGCCTGGTGAGTAATA 0.299 10 15 PTGDR2 11251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 60620596 60620596 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCTGCCGCGAGTTGCACGTGG 0.667 9 25 NAA40 79829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 63721927 63721927 + Silent SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ACGCGGGTGGGCACTGTGGTG 0.582 13 87 DDI1 414301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 103908169 103908169 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CGACCCACTGGATCGGGAAGC 0.502 64 97 CD163L1 283316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7526162 7526162 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCCCAGGTCCCGTTATAGAAG 0.517 150 219 HEBP1 50865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 13128274 13128274 + Missense_Mutation SNP G G A rs76698360 by1000genomes TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCATTGCGCCGTCCGTAGGGC 0.587 42 137 CCDC91 55297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 28544295 28544295 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAGTACATTTCTGCAATTGAG 0.368 32 60 SYT10 341359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 33529816 33529816 + Silent SNP A A G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GACTATCAAAACTGGTCGCCC 0.413 38 74 MYF5 4617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 81111280 81111280 + Silent SNP T T C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGAACTACTATAGCCTGCCGG 0.577 114 187 PLBD2 196463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 113824841 113824841 + Silent SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCCAGATCTTCCGGCGGAACC 0.607 18 187 PLBD2 196463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 113824842 113824842 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCAGATCTTCCGGCGGAACCA 0.607 18 185 PLBD2 196463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 113824843 113824843 + Missense_Mutation SNP G G T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAGATCTTCCGGCGGAACCAG 0.602 18 181 ATP12A 479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 25268628 25268628 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTAAAATTCTCAGAGGTCATT 0.353 58 88 KL 9365 hgsc.bcm.edu;broad.mit.edu 37 13 33591133 33591133 + Silent SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGCTGGGCGTGCAGCCCGTGG 0.736 8 6 LIG4 3981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 108861247 108861247 + Silent SNP T T C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AAGCCATTTCTTCAGGAGTCT 0.388 18 36 ATP10A 57194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 25940187 25940187 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TGGGCAGAGAGAGGAGAACCT 0.607 29 131 PDCD7 10081 hgsc.bcm.edu;broad.mit.edu 37 15 65425278 65425278 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTCCTGCACACACTTCACCCT 0.667 4 82 PEAK1 79834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 77407234 77407234 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTCAAGACCAGAGCATAGCTG 0.542 35 51 CHSY1 22856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 101718744 101718744 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTGGTCTTGGCGTTGGCATTG 0.577 24 81 C16orf11 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 615104 615104 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CGGCATGCTGGGCCCTGCAGC 0.741 23 33 TSC2 7249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2138115 2138115 + Missense_Mutation SNP C C G rs137854136 TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCCTTCGTGGCCCGCCAGATG 0.662 71 114 ZFHX3 463 hgsc.bcm.edu;broad.mit.edu 37 16 72991939 72991939 + Silent SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTTTGCAGTAGACACAGGAGC 0.597 13 180 MAF 4094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 79633769 79633769 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GTGGGCAGGTCGGAGTTGCTC 0.612 31 82 AIPL1 23746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 6331637 6331637 + Splice_Site SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCCAGCCCCACCTGCAGCAGC 0.657 56 20 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577144 7577144 + Missense_Mutation SNP A A G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GTTCCGTCCCAGTAGATTACC 0.522 27 4 HOXB5 3215 hgsc.bcm.edu;broad.mit.edu 37 17 46669799 46669799 + Silent SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GGGCCCTTTTCCCGTCCGGCC 0.632 41 50 ABCA6 23460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 67111542 67111542 + Silent SNP A A G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ACAATCCATTAAGAATATTTA 0.368 44 71 GPRC5C 55890 hgsc.bcm.edu;broad.mit.edu 37 17 72443103 72443103 + Missense_Mutation SNP C C T rs144073326 TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGCCACCAGGCGGCCACACCG 0.637 12 196 SALL3 27164 hgsc.bcm.edu;broad.mit.edu 37 18 76753213 76753213 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GTCGGTGTTCGAGCCCAAAGC 0.657 10 22 TXNL4A 10907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 77748273 77748273 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCTCGTCCATCTTCATGCACG 0.667 8 20 MYO1F 4542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8617006 8617006 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTGCCCCCATCTGGCTCCCCA 0.552 93 141 MUC16 94025 hgsc.bcm.edu;broad.mit.edu 37 19 9065338 9065338 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTACTCACAAGAGTGGTTATC 0.493 5 55 SIGLEC6 946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 52034681 52034681 + Missense_Mutation SNP G G T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGGGTAGTGGGCAATCTGCAG 0.597 32 29 SRSF4 6429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 29476672 29476672 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCGGCTTCTGCTCTTACGGGA 0.458 19 223 MTF1 4520 hgsc.bcm.edu;broad.mit.edu 37 1 38281148 38281148 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTCCTTTGCAGAGTCCCGGCA 0.612 5 68 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 39835815 39835815 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ACGGAAACTTCTATGAGTGCT 0.438 17 34 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 39852993 39852993 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TGCAAAATTGGAGCGGCTACA 0.453 88 188 ZNF697 90874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 120166640 120166640 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TATGCTGTCAGACTCAGACAG 0.622 13 32 FMN2 56776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 240370340 240370340 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GAGGCGAAATCGATACAGACT 0.572 15 33 AP5S1 55317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 3802937 3802937 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTAGCTGTGGCCAGGTAACCA 0.547 26 68 ZNFX1 57169 hgsc.bcm.edu;broad.mit.edu 37 20 47887262 47887262 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GCAGTGCTGTCGTATTTTCCA 0.473 10 171 SON 6651 hgsc.bcm.edu;broad.mit.edu 37 21 34927038 34927038 + Missense_Mutation SNP A A G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCTTCTGAACACAAATCACGC 0.423 5 75 BRD1 23774 hgsc.bcm.edu;broad.mit.edu 37 22 50217117 50217117 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CGTCATCTGTCTTTTTGAAGG 0.647 8 114 PXDN 7837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 1652144 1652144 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TGAGCTCCGTGTTCAGCAGCT 0.652 22 79 UCN 7349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27530422 27530422 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TGATGCGGTTCTGCTCGGCGC 0.647 43 55 TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179615597 179615597 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GTAGTATTGGCCATAATTTCT 0.373 27 79 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ATAAGCATGACGACCTATGAT 0.393 25 41 USP40 55230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234434186 234434186 + Missense_Mutation SNP T T C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AAGAACCATGTCTCCTTCCCA 0.373 30 73 COL7A1 1294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48628163 48628163 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CGAGCAGACACCCGCACAGTG 0.612 29 109 POU1F1 5449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 87313619 87313619 + Missense_Mutation SNP C C G rs142837047 TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ATCCATGACTCAAGGTGTGGT 0.413 32 58 HGD 3081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 120347254 120347254 + Missense_Mutation SNP G G T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GGTTCCTGGAGTTGGGAGTGA 0.468 43 165 PRR23B 389151 hgsc.bcm.edu;broad.mit.edu 37 3 138739058 138739058 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTCCTGGGCGGCGATCTCTGG 0.662 6 103 PCDH7 5099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 30723437 30723437 + Silent SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGGGTCAGGTCATCGTGCTTG 0.602 9 14 LMBRD2 92255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 36122537 36122537 + Missense_Mutation SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TACTTGAGTTCGACGGTGTCT 0.408 23 42 PCDHA10 56139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140237506 140237506 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCGCGTGGGGCTGTACACGGG 0.632 14 56 BTNL8 79908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 180374587 180374587 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTATTTTTTGGCATTGTTGGA 0.458 109 188 NUP153 9972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 17629745 17629745 + Silent SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTGCTGAGTTCGAAGATGAGG 0.388 35 43 GPR116 221395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 46830772 46830772 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GGCATAGCTTCTGGATGACTT 0.507 35 62 UTRN 7402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 145149966 145149966 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTTTCTCACTGATAGCAGCTC 0.423 6 34 ADCY1 107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 45699747 45699747 + Missense_Mutation SNP G G A TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCATAACATCGAAACCTTTTT 0.483 17 53 ADAM22 53616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 87792427 87792427 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAGGTGTCTTCCTGTGGCTTC 0.428 36 103 CYP3A4 1576 hgsc.bcm.edu;broad.mit.edu 37 7 99359851 99359851 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ACCATGTCAAGATACTCCATC 0.398 6 90 GIGYF1 64599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100281867 100281867 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TACCTGCTGACCAGCTGGAGA 0.657 25 20 SLC26A3 1811 hgsc.bcm.edu;broad.mit.edu 37 7 107423255 107423255 + Missense_Mutation SNP G G T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTGTAGAGGCGCCAGGAGAAA 0.413 10 162 EXOC4 60412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 133692502 133692502 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGTCTGGCATCAAGAAAATGT 0.522 10 60 KBTBD11 9920 hgsc.bcm.edu;broad.mit.edu 37 8 1950795 1950795 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GGCGCGACGAGTGGCAGGAGT 0.687 7 6 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 100829810 100829810 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTACTTGTCTCAAAGCATAGA 0.373 24 58 SCRIB 23513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144895232 144895232 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TTCCGGTCAAGCCACAGCTCC 0.627 6 15 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76937038 76937038 + Nonsense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCCAGTATGTGAAGACAGCAC 0.338 46 18 PANX2 56666 broad.mit.edu;ucsc.edu 37 22 50609371 50609371 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CTGGTCTTCACCAAGAACTTC 0.731 4 13 RP11-248G5.8 0 broad.mit.edu;ucsc.edu 37 13 52864030 52864030 + RNA SNP C C T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 GAATGATACTCCAAAGGAATA 0.313 9 20 KIAA1161 57462 broad.mit.edu;ucsc.edu 37 9 34372002 34372002 + Nonsense_Mutation SNP G G A TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ATGGGGTCTCGGAAGGCCTCG 0.612 8 56 MYO5B 4645 broad.mit.edu;ucsc.edu 37 18 47383224 47383224 + Silent SNP T T G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGCCGAGTTCTCCATCTTCAT 0.488 25 37 UTRN 7402 broad.mit.edu;ucsc.edu 37 6 145149992 145149992 + Splice_Site SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAGGAAGTGTGTAAGTAAATC 0.423 3 28 AC005609.1 0 broad.mit.edu;ucsc.edu 37 5 140242564 140242564 + Missense_Mutation SNP G G C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CCACTTGGTGGCGAAGGTGCG 0.642 7 17 CD58 965 broad.mit.edu;ucsc.edu 37 1 117113546 117113546 + Missense_Mutation SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 AGCAGGCAGACCACGCTGAGG 0.741 3 5 PHB2 11331 broad.mit.edu;ucsc.edu 37 12 7077734 7077734 + Missense_Mutation SNP A A T TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CAACACTCGCAGGGAGATATT 0.532 15 39 PCDHB18 54660 broad.mit.edu;ucsc.edu 37 5 140615277 140615277 + RNA SNP C C G TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 ACAGTTTGCTCAATTCAGGAC 0.478 11 7 RUNX2 860 broad.mit.edu;hgsc.bcm.edu 37 6 45390354 45390355 + Frame_Shift_Ins INS - - C TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 CGGCGCTTCAGCCCCCCCTCCA 0.649 39 182 MYH4 4622 broad.mit.edu;hgsc.bcm.edu 37 17 10363541 10363541 + Frame_Shift_Del DEL G G - TCGA-P5-A5EV-01A-11D-A27K-08 TCGA-P5-A5EV-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx bff5bd37-e4e7-49c2-9409-83767ef69c1e b6f238d3-7707-4848-9aa9-24469257d1e4 TCTGGCCTTTGGTTACGAACT 0.428 29 107