Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR4C13 283092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 49974106 49974106 + Silent SNP G G T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 TGCTCATTGTGGTCACCATCA 0.428 131 173 DAGLA 747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 61504678 61504678 + Missense_Mutation SNP C C G TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 ACACTACGGCCTGATTGTGGT 0.637 146 189 AMIGO2 347902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 47471391 47471391 + Missense_Mutation SNP T T A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 AAAACACCACTCTTTTACCTG 0.522 30 7 PLCB2 5330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40584082 40584082 + Missense_Mutation SNP C C T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GGCCAACGCCCCATTGACCTG 0.622 27 14 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578280 7578280 + Missense_Mutation SNP G G C TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 ATGCTGAGGAGGGGCCAGACC 0.552 57 10 NT5C 30833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 73127345 73127345 + Missense_Mutation SNP C C T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CAGGAAAAAGCCCGGGGCTTC 0.652 51 79 DSG4 147409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 28993042 28993042 + Silent SNP T T A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CTGACCTCCCTTTGCTCGGAC 0.418 74 112 MROH7 374977 hgsc.bcm.edu;broad.mit.edu 37 1 55166019 55166019 + Missense_Mutation SNP G G A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CAGGTGCGCCGGATCCCCGAG 0.642 4 53 C8A 731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 57341750 57341750 + Missense_Mutation SNP G G A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 TGCCTGAAACGCCACCTTGTG 0.542 18 41 RPE65 6121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 68904625 68904625 + Splice_Site SNP C C A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CCTTTCTTACCCTTTCCAGCA 0.423 135 224 RSBN1 54665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 114308980 114308980 + Silent SNP G G A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 TTCTAGGGATGAAGTAGATAT 0.443 41 67 MPZ 4359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 161275672 161275672 + Missense_Mutation SNP C C T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 ACCGCTATTTCTTATCCTTGC 0.592 46 65 TSHZ2 128553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 51872176 51872176 + Missense_Mutation SNP T T C rs35790657 TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 AAGCACAATTTCCATGTTCCA 0.562 35 38 LGALS2 3957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37966744 37966744 + Splice_Site SNP T T C TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 ATTACAAAGCTGCAGGAGAAG 0.527 45 65 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21225141 21225141 + Missense_Mutation SNP G G A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 TATTCTTCACGAAGGGCCATA 0.363 28 44 ZAP70 7535 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 98354121 98354121 + Missense_Mutation SNP A A G TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GACGACAGCTACTACACTGTA 0.637 30 47 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 ATAAGCATGACGACCTATGAT 0.393 33 56 OTOS 150677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241079506 241079506 + Splice_Site SNP C C T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GGCTTGGCCCCTGCAAAGGAA 0.572 24 9 RTP2 344892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 187416395 187416395 + Missense_Mutation SNP G G A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GCCGGATCCCGCCTGGGCCCT 0.612 54 86 GPR78 27201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 8583134 8583134 + Missense_Mutation SNP T T G TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GGCGCTGCACTTGGCTGCTCG 0.711 15 27 PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 67591097 67591097 + Missense_Mutation SNP A A G TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CAAACGTATGAACAGCATTAA 0.373 57 63 ANKRD34B 340120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 79854526 79854526 + Missense_Mutation SNP T T C TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 AACACTGTGATCTAAAGGGAA 0.453 75 117 STX11 8676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 144508400 144508400 + Silent SNP C C T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GCCGCCACCGCGAACTGCTGC 0.637 40 14 TOP1MT 116447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144392244 144392244 + Missense_Mutation SNP A A G TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 GCACCAGGCAATGCTGATCCT 0.627 59 92 KRT15 3866 broad.mit.edu;ucsc.edu 37 17 39673389 39673389 + Missense_Mutation SNP C C T TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CAGGATGACCCGGGAGTTGTC 0.597 59 122 EPPK1 83481 broad.mit.edu;ucsc.edu 37 8 144942913 144942913 + Silent SNP G G A TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 TGGTGACTGCGCTGACCACCT 0.687 4 8 ATRX 546 broad.mit.edu 37 X 76919034 76919035 + Frame_Shift_Del DEL TT TT - TCGA-P5-A5EU-01A-11D-A27K-08 TCGA-P5-A5EU-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 090094cb-6e22-4409-938a-11d3107c33ef f66ea56c-7053-4147-bb40-9cab955d5957 CAGAATTGACTTGATTTTTTGC 0.361 9 2