Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NAV2 89797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 19970369 19970369 + Silent SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AAGCAGGAGACGCCCCCTCAA 0.617 11 78 ADAMTS15 170689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 130332501 130332501 + Silent SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e GCGTGGGCTCCAAGCCCTGTC 0.647 17 129 PRB3 5544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 11420209 11420209 + RNA SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TTTCCAGCGGGAGGTGGCAGA 0.622 36 220 MGAT4C 25834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 86374059 86374059 + Missense_Mutation SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e ATGGCATCACGCCAGGAAGAA 0.398 12 78 SLC13A2 9058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 26817446 26817446 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e GTCTTCCCGCCGCTCAGCCAT 0.612 40 264 LRRC37B 114659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 30349672 30349672 + Missense_Mutation SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e GGATTCATTGGTGCAGTCTGA 0.507 23 115 ZNF521 25925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 22805969 22805969 + Missense_Mutation SNP T T G TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AGCACCACATTGATTACAGAT 0.478 23 147 ZNF426 79088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9646905 9646905 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TCAGCAGCTGCCATCCCGCGA 0.463 11 74 EHD2 30846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 48229108 48229108 + Missense_Mutation SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TTCGCGGAGCGCGTGGACCTC 0.637 10 52 KIAA0754 643314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 39876726 39876726 + Silent SNP A A G TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CGAGGGCCACAAAAAGTTTAG 0.512 10 29 CEP250 11190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 34059913 34059913 + Silent SNP T T C TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e ATGAAGCATCTCTTAGTAGGA 0.423 33 186 YTHDF1 54915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 61833842 61833842 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TTATTGGGTACATCCTTAACA 0.537 15 82 VAMP5 10791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 85818866 85818866 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AGAGTTGGAGCGGTGCCAGCA 0.602 20 102 AMER3 205147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 131521800 131521800 + Nonsense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CATGCTGGAGCAGAAACAGTC 0.632 12 45 FN1 2335 hgsc.bcm.edu;ucsc.edu 37 2 216288193 216288193 + Missense_Mutation SNP G G C TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TTGTTGTATAGGAAGGGGAAG 0.463 6 55 RARB 5915 hgsc.bcm.edu;ucsc.edu 37 3 25470378 25470378 + Splice_Site SNP A A G TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e ACACTGCTCAATGTAGGTTTA 0.433 6 40 CELSR3 1951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48678778 48678778 + Missense_Mutation SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CGCTGGGCCCGGCCCAGAGAA 0.652 25 125 COPB2 9276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 139085462 139085462 + Missense_Mutation SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TGGAATGGTAGGAAGGACCTT 0.398 11 45 DNAJB14 79982 hgsc.bcm.edu;ucsc.edu 37 4 100822294 100822294 + Missense_Mutation SNP T T C TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TTTTGCTGCATACTGCATATC 0.373 8 59 ABLIM3 22885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 148617131 148617131 + Missense_Mutation SNP T T C TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CAGATACATGTCCGACGAGAT 0.522 29 117 ATP10B 23120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 160049524 160049524 + Silent SNP G G T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TGTCTGACAAGGTCTCCAACC 0.488 17 89 PKHD1 5314 hgsc.bcm.edu;ucsc.edu 37 6 51897876 51897876 + Missense_Mutation SNP A A T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e ACTGGATTTAAGGAAGAGACA 0.383 6 56 MAP7 9053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 136710581 136710581 + Nonsense_Mutation SNP T T A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AACCTCTTCTTCCGCTCTTCC 0.542 25 135 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 152651648 152651648 + Silent SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CCCCAAGGCCCGCCACCTCGT 0.552 11 60 CDK13 8621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 40102644 40102644 + Missense_Mutation SNP A A G TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CGAACTCTTCACTAAAAAACC 0.333 14 73 POM121L12 285877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 53103839 53103839 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e ACAGAGAgcccgccccgcagg 0.721 11 47 VDAC3 7419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 42259491 42259491 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AATAATTTCGCCCTGGGTTAC 0.463 9 57 GSDMD 79792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144642132 144642132 + Missense_Mutation SNP C C T TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e GACTCTGCTCCATGAGAGGTG 0.537 9 55 SLC24A2 25769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 19786146 19786146 + Missense_Mutation SNP C C G TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AGACACATCTCGAAAGAGCGG 0.393 10 86 EXTL1 2134 broad.mit.edu;ucsc.edu 37 1 26360306 26360306 + Silent SNP C C T rs137944707 byFrequency TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e AGAGGACCAACGAATTCTCCA 0.597 17 78 SPRYD3 84926 broad.mit.edu;ucsc.edu 37 12 53468957 53468957 + Missense_Mutation SNP A A C TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e CTGAGGGACCAGCCCCACAGC 0.562 27 173 LZTR1 8216 broad.mit.edu;ucsc.edu 37 22 21347144 21347144 + Missense_Mutation SNP G G A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e TACATCTTCGGGGGCACGGTG 0.652 3 12 GSDMD 79792 broad.mit.edu;ucsc.edu 37 8 144645068 144645068 + Silent SNP C C A TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e GCCAGGAGCCCCACTAGCCTG 0.667 5 30 BMPR1B 658 broad.mit.edu;hgsc.bcm.edu 37 4 96046194 96046194 + Frame_Shift_Del DEL C C - TCGA-HW-A5KK-01A-11D-A27K-08 TCGA-HW-A5KK-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 90b22eb7-4e33-40b3-876c-70db5f2803d1 255ac70b-b68b-4384-be0e-057217146e1e ATGAAACTTACATTCCTCCTG 0.408 15 50