Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26285470 26285470 + Missense_Mutation SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TCTGAAGAGGGGTGAAAGAAT 0.353 14 102 CABP4 57010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67222946 67222946 + Missense_Mutation SNP C C T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GGCCATTGGCCGTCAGAAGCC 0.642 21 16 DPPA3 359787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7867804 7867804 + Silent SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CCTCCGAGACGTTGATAAAGA 0.453 60 111 FMNL3 91010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 50044648 50044648 + Missense_Mutation SNP T T A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TTCAAACTTATCAAGATCCAG 0.512 14 60 SOAT2 8435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 53517583 53517583 + Missense_Mutation SNP T T A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GACCATGCTGTTTCTAGGCCA 0.577 24 61 TRHDE 29953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 73012760 73012760 + Missense_Mutation SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GCTGCCAGCCGAGCTCTTTAT 0.368 26 71 THSD4 79875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 71535120 71535120 + Silent SNP C C T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CCCGCCATTCCAGGTCCCAGG 0.567 13 142 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577548 7577548 + Missense_Mutation SNP C C T rs28934575 TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CGGTTCATGCCGCCCATGCAG 0.577 47 19 USP43 124739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 9631874 9631874 + Missense_Mutation SNP A A T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 AACAGCAAAGACAGTCGCCGA 0.572 12 34 DBF4B 80174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 42828250 42828250 + Missense_Mutation SNP C C G TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TGTTAAGGGCCCACTCCTCTT 0.592 54 119 ZNF334 55713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 45131229 45131229 + Missense_Mutation SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 AATGAGGGTAGATCTCTTAGA 0.398 52 104 HELZ2 85441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 62196772 62196772 + Missense_Mutation SNP C C T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GTCTCTGGCACGAAAGAGCAG 0.701 5 25 DNMT3A 1788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 25457209 25457209 + Nonsense_Mutation SNP C C T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TGGCACGCTCCATGACCGGCC 0.557 22 54 IL1RL2 8808 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 102835531 102835531 + Silent SNP A A G TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 AACGAATCAGAGAAGGGGTGG 0.403 43 101 ST6GAL2 84620 hgsc.bcm.edu;broad.mit.edu 37 2 107446647 107446647 + Missense_Mutation SNP C C T rs144935783 TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GTTTCTCTGACGATGCTGAAT 0.353 13 161 ZNF804A 91752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 185801555 185801555 + Missense_Mutation SNP C C G TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TAAAAATAAGCCAGACTTAAA 0.343 19 135 FZD5 7855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 208632020 208632020 + Missense_Mutation SNP G G T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GCGCAGGTGAGCGCCGCCTCC 0.667 7 30 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 ATAAGCATGACGACCTATGAT 0.393 33 71 TMEM40 55287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 12779642 12779642 + Silent SNP T T G TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TACCACTTGCTGGGTCAGAGC 0.557 11 29 CMTM7 112616 hgsc.bcm.edu;broad.mit.edu 37 3 32483476 32483476 + Missense_Mutation SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CTTCTACCGCGTGCTCACCTG 0.537 10 130 POGLUT1 56983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 119204196 119204196 + Nonsense_Mutation SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 AGTGGCCATGGAAAAAGAAAA 0.299 14 52 AP2M1 1173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 183898930 183898930 + Missense_Mutation SNP G G C TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 TACCTGAGTGGCATGCCTGAA 0.537 35 214 TRIM15 89870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 30134981 30134981 + Missense_Mutation SNP T T C TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CTGGAAGCTCTGAGCACGGAG 0.453 17 76 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32018082 32018082 + Silent SNP G G A TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GGGTGGTCTCGGCTTCATCCT 0.597 39 69 GPR63 81491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 97246405 97246405 + Silent SNP C C T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GTATCCGTCGCTTTGTGTGAC 0.478 36 69 ZNF804B 219578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 88964578 88964578 + Missense_Mutation SNP A A C TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CTAAAGCACAACTGCTTCTAC 0.383 24 47 BAIAP2L1 55971 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 97941545 97941545 + Missense_Mutation SNP C C T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CTCCTGCCACCGAGGCAGCTT 0.448 22 241 AMER1 139285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 63412957 63412957 + Silent SNP A A G TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CAAAGAAACTAGGCAGAGTAC 0.542 14 73 KIAA1841 84542 broad.mit.edu;ucsc.edu 37 2 61310289 61310289 + Splice_Site SNP G G C TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GATTTTTTAGGTTGAACAGTG 0.318 15 41 USP12 219333 broad.mit.edu;ucsc.edu 37 13 27680004 27680004 + Silent SNP C C T rs142426104 TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 GACTCTTATACGCAAGAACTT 0.393 19 70 DAG1 1605 broad.mit.edu;ucsc.edu 37 3 49569023 49569023 + Missense_Mutation SNP A A G TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 CCAGTCAGGGATCCTGTTCCT 0.602 36 198 FGFR4 2264 broad.mit.edu;ucsc.edu 37 5 176517585 176517585 + Missense_Mutation SNP G G T TCGA-HW-8321-01A-11D-2395-08 TCGA-HW-8321-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e6d82338-1b8a-4120-9ce1-f50906ed4540 1b40ef43-8209-45a5-9a71-467c400c19e0 ACCTGAGGATGCTGGCCGCTA 0.607 22 91