Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count WAPAL 23063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 88231975 88231975 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CTAAGGCAACGTGTGTTTAGA 0.333 19 7 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 89692877 89692877 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TCATGTTGCAGCAATTCACTG 0.393 58 29 TNNT3 7140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1956135 1956135 + Missense_Mutation SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GAAGCTGAAACGCCAGAAATA 0.612 99 133 OR51T1 401665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4903765 4903765 + Silent SNP C C T rs138268565 TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ATGGCACTGACGTATTGTTTA 0.443 39 53 TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 78369775 78369775 + Silent SNP T T C TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AGCTGGTGATTGTGGAGCCAT 0.537 48 53 SLC6A12 6539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 311930 311930 + Missense_Mutation SNP T T G TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TTGTTGCAGGTCGTCCAGGGC 0.517 36 53 KCNH3 23416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49937975 49937975 + Silent SNP G G T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGGCCCATCTGCTGAAGACGG 0.701 11 16 ACADS 35 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 121176678 121176678 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CTGACCTGGCGCGCTGCCATG 0.642 58 86 NPAS3 64067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 34263138 34263138 + Missense_Mutation SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AAAGTACTATCGCTGGATGCA 0.373 26 41 TELO2 9894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 1552359 1552359 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GCAGCCCTGCGGGCCCTTGAG 0.667 17 14 CES4A 283848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67034837 67034837 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TGGCCGCCCGCGAGAAAGTGG 0.647 19 39 DNAH2 146754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7637984 7637984 + Silent SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TTGCCAAGTCGTCCTACTTGG 0.522 36 56 ARHGEF15 22899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 8216517 8216517 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCACCATTTTCGGGGACCCCC 0.592 36 62 KIF2B 84643 hgsc.bcm.edu;ucsc.edu 37 17 51900500 51900500 + Missense_Mutation SNP C C T rs138727670 byFrequency TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGCGATCCAGCGCAGTGACAA 0.542 40 60 SEC11C 90701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 56823020 56823020 + Missense_Mutation SNP G G A rs115898236 by1000genomes TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AAAGAAGGACGTGGTGGGAAG 0.363 29 50 TUBB4A 10382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6495759 6495759 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GCCAGCTTGCGCAGGTCGGCG 0.682 47 143 CD22 933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 35831915 35831915 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ACCCCATGGCGCCTGGGAGGA 0.542 35 101 ZNF331 55422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 54081063 54081063 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TACAGAATGTGGGAAGAGCTT 0.473 18 56 PLEKHN1 84069 hgsc.bcm.edu;broad.mit.edu 37 1 906524 906524 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ACGGCGTCAGGGCACGAACCC 0.692 12 11 HSPB7 27129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 16343699 16343699 + Missense_Mutation SNP C C T rs143274675 TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCCACCGGGGCGGGCTGTGGG 0.627 90 142 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22176934 22176934 + Missense_Mutation SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ACTCGGCACACGTACTCGCCC 0.657 10 19 PTPRU 10076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 29611340 29611340 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TTGCTGTCCTCATCCTTCTCC 0.617 42 67 MKNK1 8569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 47024299 47024299 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CTGGGCCAGGGCCCGTCTCCG 0.622 20 43 C8B 732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 57411659 57411659 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AACTCGTAATGGAGCATGAGG 0.468 32 46 PFKFB2 5208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207252343 207252343 + Silent SNP G G A rs144692490 TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCTCCGCAGCGTCCCTCATGT 0.552 82 106 GART 2618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 34911630 34911630 + Splice_Site SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ATTGTTCTGTCTGTAAAGCAG 0.438 43 104 ZBTB21 49854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 43413378 43413378 + Missense_Mutation SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AACAGGTGGCCGTGGTCTCTT 0.428 23 48 LTBP1 4052 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 33525560 33525560 + Missense_Mutation SNP A A G TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GTAAACGGGCAGTGCAAAAAT 0.473 57 65 SLC16A14 151473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 230923895 230923895 + Silent SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GCCATTCCACGTTGAGGACAC 0.562 57 50 CD200R1L 344807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 112546321 112546321 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CTGAAGGTCCGAATTCTGATC 0.463 49 66 MUC4 4585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 195488980 195488980 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCGTGCGGTTCTGGTACTCGG 0.736 11 26 EXOC1 55763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 56734654 56734654 + Nonsense_Mutation SNP G G T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AGCCTTTGCAGAAAAATTGTC 0.393 27 37 DCHS2 54798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155176790 155176790 + Silent SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CAATCAGGCCGTTCAAACCAC 0.408 26 21 NPY5R 4889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 164271443 164271443 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TAGAGCTCGACGAGTATTATA 0.358 24 41 FAM81B 153643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 94749822 94749822 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AGGAATCGCTCGCCAGGAAGT 0.463 39 52 SEPT7 989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 35872445 35872445 + Missense_Mutation SNP A A G rs11538083 TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGATTTGCCAATCTCCCAAAT 0.373 70 95 GRM8 2918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 126173579 126173579 + Silent SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AACTAAGTTCGCGTCCTGAAG 0.458 35 80 TRPV6 55503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142573633 142573633 + Missense_Mutation SNP G G A rs146718533 TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GTGTGCTTCCGCTTCTGCATC 0.522 93 193 TAS2R40 259286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142919653 142919653 + Missense_Mutation SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TTTCCTCTCTCGAGAGATGTC 0.458 70 169 CNTNAP2 26047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 147259309 147259309 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CTGATGGCAGCGGACCTCTGG 0.398 44 99 DEFA4 1669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 6793553 6793553 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TAATCGACACGCGTGCAGCAG 0.507 74 53 FER1L6 654463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 125107242 125107242 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ATAGAAACTCGGCCACTGTAC 0.478 18 42 TG 7038 hgsc.bcm.edu;ucsc.edu 37 8 134108459 134108459 + Missense_Mutation SNP G G A rs61730222 byFrequency TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GCTCCTGGCCGTGAGTGGCCC 0.502 91 152 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144941624 144941624 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGCGGCCTGCGCCTCCAGCAG 0.667 35 67 RUSC2 9853 hgsc.bcm.edu;broad.mit.edu 37 9 35546640 35546640 + Missense_Mutation SNP G G C TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGGAGCACAAGACCTAATCCC 0.592 7 85 RUSC2 9853 hgsc.bcm.edu;ucsc.edu 37 9 35546856 35546856 + Missense_Mutation SNP G G C TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGTGAGCCAGGACTTGGTGAC 0.562 13 81 RUSC2 9853 hgsc.bcm.edu;ucsc.edu 37 9 35546876 35546876 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCTGTATGATGACAGCATTGG 0.587 11 84 RUSC2 9853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35548107 35548107 + Missense_Mutation SNP C C A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GGCCCTGCAGCCATGGCCGGG 0.667 15 42 KDM6A 7403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 44949046 44949046 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TCTTTATGAAGCAAATGTTCC 0.373 16 35 TGIF2LX 90316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 89177102 89177102 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCGCTGCGGACGGCCCGGCTG 0.517 38 47 ZCCHC12 170261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 117960229 117960229 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 GCCAGGAAGCGAAAACACACA 0.493 62 96 MAMLD1 10046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 149638772 149638772 + Silent SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AGCTGAAGGCGTTGGCAGCCA 0.632 61 88 BGN 633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 152773771 152773771 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCATGGGCTTCGGGGTGAAGC 0.617 173 177 ZAN 7455 broad.mit.edu;ucsc.edu 37 7 100377162 100377162 + RNA SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 CCGCAGGGCGCGGGAAAAGTG 0.642 10 29 SIPA1L3 23094 broad.mit.edu;ucsc.edu 37 19 38572687 38572687 + Missense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TCCCCCGGCAGGGCCTTCCTC 0.711 73 161 PI4KA 5297 broad.mit.edu;ucsc.edu 37 22 21083938 21083938 + Silent SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ACAGCAGCAGCGTCCTGCGCT 0.597 4 4 ZNF41 7592 broad.mit.edu;ucsc.edu 37 X 47307146 47307146 + Nonsense_Mutation SNP G G A TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AGATTTGATCGGTCAGTGAAG 0.448 48 59 DNM1P47 100216544 broad.mit.edu;ucsc.edu 37 15 102312969 102312969 + RNA SNP C C T TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TTGGCTCCAGCGGAGTTGAAA 0.572 11 16 MAP7D3 79649 broad.mit.edu;ucsc.edu 37 X 135313709 135313709 + Silent SNP A A G TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 AAACCTTTGGAGCGTCTCTCG 0.423 66 102 SNAPIN 23557 broad.mit.edu;hgsc.bcm.edu 37 1 153632019 153632021 + In_Frame_Del DEL AAC AAC - TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 TGTCTTGGTTAACAACATTCTAC 0.433 47 71 PTAR1 375743 broad.mit.edu;hgsc.bcm.edu 37 9 72349082 72349082 + Frame_Shift_Del DEL C C - TCGA-HT-A5RA-01A-11D-A289-08 TCGA-HT-A5RA-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx c72304bb-c1bd-4b35-8fff-116aa6b680f4 947d02d9-a22f-4b5c-9284-06baad55b580 ATCCATGTTTCTGGACTCTTT 0.388 16 16