Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count DHTKD1 55526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 12142226 12142226 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGGCCACCGCGGAAGCTCTT 0.423 60 208 MKX 283078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 28023587 28023587 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGGTGCCACGTAGTCCTCAC 0.488 97 63 ARHGAP22 58504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 49687793 49687793 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCTTCTCCCGCTCCCCGGCA 0.672 10 21 STOX1 219736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 70645798 70645798 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GACGACTTACGTCAAATGCTG 0.438 28 81 TSPAN15 23555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 71258152 71258152 + Splice_Site SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGGAACACGGTAGACACTG 0.587 31 48 CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 73461953 73461953 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAAATCGTCGTCTCTGTTAC 0.657 46 204 CYP2C18 1562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96480238 96480238 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACAGAGACAACGAGCACCACT 0.423 21 90 DNTT 1791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 98064310 98064310 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCCGGCAGACGGGTGCCTTG 0.567 21 95 CRTAC1 55118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 99696063 99696063 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATCGACCGCGATGTTCACCA 0.667 36 45 GBF1 8729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 104141973 104141973 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCAGGTGGGCGTGCCACCTA 0.682 50 170 PDCD11 22984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105184818 105184818 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGTAGAGACGGGCCACCTGG 0.547 25 107 CALHM2 51063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105209166 105209166 + Missense_Mutation SNP C C T rs139579411 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTGAGCCTGCGGCTGACCTC 0.592 35 137 SFR1 119392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105883598 105883598 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAGAAACCAGCATCTTCCAC 0.299 9 85 EIF3A 8661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 120796752 120796752 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TATCCCTATCGTCCCGGCGAC 0.547 37 149 GPR26 2849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 125426287 125426287 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGCCTCCGCGACGCGGCGCT 0.701 8 19 GPR26 2849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 125426409 125426409 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGCCGGCGGCCAGACGAGC 0.682 19 25 CHST15 51363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 125804256 125804256 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCCGTGCGCGTGCGCCAGGT 0.662 17 25 DEAF1 10522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 654033 654033 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCTCCCGGCCGCAGTTAACG 0.622 12 54 PIDD 55367 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 800359 800359 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAGCCTCCCGGTCCAGAGTG 0.632 38 96 MUC2 4583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1080294 1080294 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGTATATGACGACATCGGGG 0.647 6 19 TRPM5 29850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 2428525 2428525 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCTGGAACGTGTAGCTGCA 0.642 20 15 OR51B4 79339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5322671 5322671 + Missense_Mutation SNP C C T rs115916434 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAGAGGGCACGGGAACCACA 0.423 54 75 ZNF143 7702 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 9522711 9522711 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAAAAGTGCACGTTAGGACAC 0.433 58 122 TSG101 7251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 18503252 18503252 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTCAATAGCGTTTTCTTCTG 0.388 41 68 TMEM86A 144110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 18723160 18723160 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTACGCCTCGGCCTTTGGCA 0.587 104 102 ELP4 26610 hgsc.bcm.edu;ucsc.edu 37 11 31805009 31805009 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGCAGAATCCGCCAAGCGGC 0.522 47 138 CSTF3 1479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 33120307 33120307 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TACTTCATGCGACTCTAAGGT 0.393 28 128 KIAA1549L 25758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 33604946 33604946 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCCATTGCCGTGGTCACGGT 0.547 10 11 EXT2 2132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 44255740 44255740 + Missense_Mutation SNP G G C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAACTGTGAAGATATTGCCAT 0.428 19 45 INCENP 3619 hgsc.bcm.edu;broad.mit.edu 37 11 61912746 61912746 + Silent SNP C C T rs141016037 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCAGATCGACGAGAAGACTG 0.577 10 142 RASGRP2 10235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 64506852 64506852 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGGGCTAACGTGGCTGTGG 0.642 13 84 SF1 7536 hgsc.bcm.edu;ucsc.edu 37 11 64532975 64532975 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCATCGCCGCCGCGGGGAG 0.637 130 135 VPS51 738 hgsc.bcm.edu;broad.mit.edu 37 11 64875676 64875676 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGGGAGGGCGGCTCAGGCGC 0.716 5 17 EFEMP2 30008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65635366 65635366 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTTCCAGCACGGATCTGAAA 0.552 48 151 PELI3 246330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 66243521 66243521 + Silent SNP C C A rs139368303 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTACTGGGCCCAGACACCAC 0.672 10 18 CTD-3074O7.11 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 66297334 66297334 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTGCGCCTACGTGCTGCCCG 0.677 33 49 SPTBN2 6712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 66460877 66460877 + Missense_Mutation SNP G G A rs150801133 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTCAGGTCCGCGATCCGGGG 0.627 9 41 KDM2A 22992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67012792 67012792 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGAGCCAGACGGAGACGAGT 0.552 39 88 SUV420H1 51111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67925272 67925272 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAATAAAATCGTCTTCAAAGT 0.403 39 43 MRGPRD 116512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 68748335 68748335 + Missense_Mutation SNP C C T rs144924033 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTGCCATCCCGCACAGGCAG 0.597 53 57 PRCP 5547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 82550376 82550376 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCTGGCCCGAATAATTGTA 0.403 27 108 AMOTL1 154810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 94554766 94554766 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GACCTCTTCCGCCAGCGGGCC 0.662 19 25 AASDHPPT 60496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 105967614 105967614 + Nonsense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AATTCCAATACGAAATGGTAC 0.348 10 32 DSCAML1 57453 hgsc.bcm.edu;ucsc.edu 37 11 117352692 117352692 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTGTGGAGACGACCTCGTCG 0.627 13 102 ABCG4 64137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 119029628 119029628 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGGCTGACGTGCCCTTTCA 0.542 53 146 ZNF202 7753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 123596990 123596990 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTTCCGGTGCGCCAGGTACC 0.577 66 75 OR10G7 390265 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 123909049 123909049 + Silent SNP G G A rs12291067 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGAACAGACGATGGACACAT 0.557 31 111 NINJ2 4815 hgsc.bcm.edu;broad.mit.edu 37 12 674455 674455 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TATGTGCCCCGAAGGCTGTAA 0.537 9 95 KCNA1 3736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 5021390 5021390 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCAGAAGGGCGAGCAGGCCA 0.517 55 98 CLSTN3 9746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7310123 7310123 + Missense_Mutation SNP G G A rs138735435 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGTGGTGTGCGTGGGCTTCCT 0.667 35 52 KLRC2 3822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 10584712 10584712 + Missense_Mutation SNP T T C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TACTTATGTTTGAAAGCCAAA 0.313 15 56 LRP6 4040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 12302045 12302045 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTTGTATTTCCAGGTTCTGA 0.438 155 236 ASUN 55726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 27069110 27069110 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAAAACAGAACGACCTGTCAA 0.338 17 43 DDN 23109 hgsc.bcm.edu;broad.mit.edu 37 12 49392947 49392947 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAATGACAGGAAATAGTCTTC 0.607 32 47 KMT2D 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49422916 49422916 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCGGCCTGAGCCCAGATGA 0.617 13 59 KMT2D 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49445202 49445202 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCTCAGGCCGGGGGGACAG 0.687 53 84 KMT2D 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49445921 49445921 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGACTCCTCCAGTGGAGAAA 0.617 38 71 KRT83 3889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52713013 52713013 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGCCTCCACGCACTCGGCC 0.612 87 175 ITGA7 3679 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56094110 56094110 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCCCGCCTCGTAGGGACCGT 0.662 26 55 SMARCC2 6601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56568511 56568511 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGTTCAGTCGGTAAGTGTCA 0.468 30 190 TIMELESS 8914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56815752 56815752 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTGCGTGTTCGAGGAACAGT 0.547 93 114 MARCH9 92979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 58152527 58152527 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGGGCCACGAGCCGCCCCC 0.652 14 30 USP15 9958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 62715345 62715345 + Silent SNP T T C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AACCACTGAATAAACCAGACA 0.333 24 41 LEMD3 23592 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 65637238 65637238 + Silent SNP T T C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGAATATGTTTGATCCCGTTA 0.318 41 71 BEST3 144453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 70048984 70048984 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTTCCTCAGCGCTGGCTGAAA 0.557 24 79 CCER1 196477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 91348005 91348005 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCTTGACCGGCCGCGGCAG 0.667 46 93 CCDC41 51134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 94769688 94769688 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTTATTTCTCGTTCAGCTTTA 0.259 6 19 NT5DC3 51559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104208744 104208744 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGTCCCGTGCAGCATTAAAT 0.448 83 144 TDG 6996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104376688 104376688 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAAAGGACCACGCCCGGCAGC 0.463 63 128 KCTD10 83892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 109889453 109889453 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATCCTCCGCACGCGCTCGATC 0.716 48 88 CIT 11113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 120128190 120128190 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTCGGGCGGCGCTGGGCTGG 0.706 14 23 CIT 11113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 120189940 120189940 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCAGGGCCGCCCGTGCAGC 0.627 30 65 RNF10 9921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 121000755 121000755 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAGACTCGGGAAGAGGCTCTG 0.547 34 73 PITPNM2 57605 hgsc.bcm.edu;broad.mit.edu 37 12 123473364 123473364 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGTGAGGGCGTCAGGGCAGT 0.642 6 16 NCOR2 9612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 124826571 124826571 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTACAGGTGCGGGTAGGTGG 0.652 24 58 TMEM132D 121256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 129566505 129566505 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACCATGGCGTGCTGGTACT 0.657 46 87 RIMBP2 23504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 130921520 130921520 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCCACGGGCGGCTCCAGCAT 0.711 18 20 RIMBP2 23504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 130927121 130927121 + Missense_Mutation SNP G G A rs147881182 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTCCCCAGCGTGCTTGCCAA 0.592 30 123 POLE 5426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 133214643 133214643 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTTCCACACGGCGCTTCTTT 0.547 21 142 POLE 5426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 133250239 133250239 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGCCTTGGCGGCCGCCTTGA 0.582 138 239 POLE 5426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 133254167 133254167 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACTCACCACGTGGATCTTCA 0.498 32 61 CDC16 8881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 115016143 115016143 + Missense_Mutation SNP T T C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACAGCTGATGAAAGGGTAC 0.428 53 17 TEP1 7011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 20846220 20846220 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGCAACCCGCATGCAGGAA 0.592 97 41 RABGGTA 5875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24737796 24737796 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAACTGGTCGTTGAGGGAGG 0.552 57 27 KHNYN 23351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24901644 24901644 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGGGCATGGCACGGGGTCG 0.667 13 52 FBXO34 55030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 55818984 55818984 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCGAGATCCACGCTATAGAGA 0.478 54 37 C14orf37 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 58605364 58605364 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGACTCAGCACCAGGAAAAGA 0.498 58 35 SPTB 6710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65253771 65253771 + Missense_Mutation SNP G G A rs138556050 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGTCTTGTCCGTGATCCACTT 0.592 42 10 ESRRB 2103 hgsc.bcm.edu;broad.mit.edu 37 14 76905826 76905826 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGCCAGCGGCGGCTTTGGCCT 0.692 53 22 RIN3 79890 hgsc.bcm.edu;broad.mit.edu 37 14 93118358 93118358 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 tgcccccCACGTCACACCCCA 0.711 12 5 AK7 122481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 96864584 96864584 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTGACTTTGCGGTGGAGACG 0.547 54 37 TDRD9 122402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 104490932 104490932 + Missense_Mutation SNP C C T rs139118201 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGAAGCAGACGGTAGATCCT 0.343 44 28 ADSSL1 122622 hgsc.bcm.edu;ucsc.edu 37 14 105207555 105207555 + Silent SNP C C T rs138449071 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGGTGCCAACGCCGCCCTCC 0.612 41 16 CEP170B 283638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105354097 105354097 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCATGCCCCGGAAGCGGGCC 0.697 5 9 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 30003072 30003072 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGTGGAGAGACGCGCTGGTGA 0.498 63 282 SQRDL 58472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45974846 45974846 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGTCAAAGACCGCTGCTGCAG 0.478 54 92 PIGB 9488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 55647590 55647590 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTCTATGAACGGAAGTTAAAA 0.358 11 117 IQCH 64799 hgsc.bcm.edu;broad.mit.edu 37 15 67629360 67629360 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCAGCCTCACGGTTCTGCCAT 0.383 9 143 UACA 55075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 70991907 70991907 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATTGACCCCCTTTTTAGCAA 0.403 66 103 ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85382932 85382932 + Splice_Site SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTACCTCTAGGTGTCGAGAA 0.647 66 117 ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85403041 85403041 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTGGCCATCGTGCAGGCCTC 0.657 36 44 AGBL1 123624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 86800128 86800128 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTCTGTGGTGCTTCAGATCC 0.562 10 41 KIF7 374654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90176401 90176401 + Missense_Mutation SNP C C T rs149548398 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCACAGAGCCGTTGCTGCCA 0.622 6 22 MAN2A2 4122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 91455396 91455396 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGCTGTCCGTCAGCAGGCA 0.647 47 180 CHD2 1106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 93489391 93489391 + Missense_Mutation SNP T T C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGAATTGCATTGACAGCTTC 0.418 49 71 MSLN 10232 hgsc.bcm.edu;broad.mit.edu 37 16 814961 814961 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCGCATCACGAAGGCCAATG 0.701 12 36 RPUSD1 113000 hgsc.bcm.edu;broad.mit.edu 37 16 836114 836114 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGTCAGGGTCGGGGGTGGCC 0.726 53 42 PRR25 388199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 855739 855739 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCGCAGCCGCTCGCAAATG 0.647 25 28 RAB26 25837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2202854 2202854 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTACGCCCAGCACGACGTGGC 0.687 18 55 ABCA3 21 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2367755 2367755 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCCATCATGCGCATGTACTC 0.627 59 68 NTN3 4917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2522004 2522004 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGCCTCGGGCGCCCCTCAAC 0.706 15 57 NTN3 4917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2522180 2522180 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGACTATGGCCGTCTGCCTGC 0.697 21 46 ZNF205 7755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 3169669 3169669 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAAGCCCTACGCCTGCACTG 0.682 87 95 ABAT 18 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 8858658 8858658 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAATGAAAACGCCTTAAAGAC 0.592 25 110 NDE1 54820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 15758701 15758701 + Silent SNP G G A rs143820142 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGATCTGGCGATGACCTACA 0.473 95 81 DNAH3 55567 hgsc.bcm.edu;broad.mit.edu 37 16 21049298 21049298 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATCTTCTGGGCGAGACTAGAA 0.552 4 46 IL21R 50615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 27445714 27445714 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCTCCAGACGGTCATCTGCA 0.632 48 45 SEZ6L2 26470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 29900012 29900012 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCCATGGGCCGGCCGGGGAG 0.637 17 83 C16orf92 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30035371 30035371 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGTGGTGGCGTTCTTCTTT 0.582 67 85 TRIM72 493829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31230620 31230620 + Missense_Mutation SNP G G A rs140684083 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGACAGTGCGTCAGTTCCGG 0.647 46 160 C16orf58 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31512031 31512031 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAGACGATGCGGCCCAGCAT 0.542 16 59 CHD9 80205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 53190078 53190078 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGATGATGCATTTGTACAA 0.388 6 53 CDH5 1003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66424460 66424460 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGACAAACCCCGCCCACAACG 0.557 58 55 TRADD 8717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67188655 67188655 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCGTGGCGCGGCGGCCCTC 0.706 9 19 SLC9A5 6553 hgsc.bcm.edu;broad.mit.edu 37 16 67289369 67289369 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TACCTGAAGGGAGTCGGTCAG 0.587 59 63 CENPT 80152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67863714 67863714 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCTGGCCCGTCAGCCTCAG 0.612 59 162 DDX19A 55308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 70400563 70400563 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCTTTTCTCCGCCACCTTTG 0.562 43 96 MARVELD3 91862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 71674814 71674814 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGTACGGCGCCAGCGTGGT 0.597 36 39 DHX38 9785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 72130788 72130788 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTTTGGGAACGCAGTCGGCA 0.547 171 178 DHX38 9785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 72133711 72133711 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGAGGACTACGTGAGGAGGC 0.577 32 22 CDT1 81620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 88873762 88873762 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGCTGCAGCGCTTAGAACGG 0.657 38 47 CBFA2T3 863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 88958664 88958664 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCAGGCCCAGCACCAGTGTGC 0.627 20 76 CDH15 1013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89256813 89256813 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAACCCACTTCGGACCAGCCT 0.687 8 29 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89347172 89347172 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTGGGCTCCGGGGGGATGA 0.711 10 104 SPG7 6687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89614459 89614459 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACGCGGCGCGGGAGGGACAC 0.642 55 272 SGSM2 9905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2265510 2265510 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTACGCACGGCGCTCATCGAG 0.637 49 160 OR1D2 4991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2995776 2995776 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGGATTTTTCGTGACCCACA 0.468 53 17 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu 37 17 3999984 3999984 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCCAGTTTCCGTAAGAAAAC 0.368 94 28 CHRNE 1145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4804399 4804399 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGTAGATGACGTCAGTCTCC 0.652 117 69 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577138 7577138 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAGCTGTTCCGTCCCAGTAG 0.527 41 14 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578463 7578463 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCGCGGACGCGGGTGCCGGG 0.612 83 28 PFAS 5198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 8167651 8167651 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGATGCCTCGGAAGGTATGT 0.622 51 11 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10299869 10299869 + Splice_Site SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAGGACTCACGTTGCAAGTT 0.463 33 14 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 11660881 11660881 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACATCAACCCGGCAGACTTGG 0.428 18 71 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu 37 17 11711063 11711063 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATATCAATCGCATCTTGGAG 0.532 10 128 TRPV2 51393 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 16336966 16336966 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATGCTGACCGTTGGCACTAA 0.592 41 160 KCNJ12 3768 hgsc.bcm.edu;broad.mit.edu 37 17 21319341 21319341 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCATGTGCGCGCGCAGCTCA 0.642 31 72 NEK8 284086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 27065189 27065189 + Missense_Mutation SNP G G A rs138066977 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCATCTCGCGTTTCCTGGAG 0.657 18 55 ERBB2 2064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 37866098 37866098 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAAGGGCTCCCGCTGCTGGGG 0.597 74 24 KRT10 3858 hgsc.bcm.edu;ucsc.edu 37 17 38978581 38978581 + Missense_Mutation SNP C C T rs117610737 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATAGCTTCCACGAAAGCTACC 0.567 203 58 KRTAP4-11 653240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39274307 39274307 + Silent SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCAGCACTGGGGCTTGCAGC 0.657 21 96 TUBG1 7283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40766567 40766567 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACTTCATCCCGTGGGGCCCCG 0.652 108 28 FMNL1 752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 43314943 43314943 + Silent SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTGCTGGCGGCCGTGTGCT 0.607 207 97 ITGA3 3675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48157736 48157736 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACCTTCATCGAGGTCAGTG 0.602 12 30 EPN3 55040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48616601 48616601 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGCAGGGGCCGTGGTCCACC 0.607 74 26 VMP1 81671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 57842391 57842391 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTAATTTTCCCGAACCACCCT 0.368 20 94 ERN1 2081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 62144066 62144066 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTTGGGGAACGGGTACTTCC 0.592 34 5 BTBD17 388419 hgsc.bcm.edu;broad.mit.edu 37 17 72353024 72353024 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGCCCGCCGCGTCGCCGCCGC 0.771 13 4 BTBD17 388419 hgsc.bcm.edu;broad.mit.edu 37 17 72353354 72353354 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGACGCGGCGTGGAACTGGT 0.731 17 4 QRICH2 84074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 74289330 74289330 + Missense_Mutation SNP C C T rs151086130 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TACACATCCACGCTGATCCAT 0.498 158 57 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76558007 76558007 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATACCTGGGCGCCACCTCGGC 0.587 67 11 EPB41L3 23136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 5423406 5423406 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGGTATAACGTTTGCTGGA 0.478 38 31 NPC1 4864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 21114452 21114452 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGCGCTCCACGCGGCTGCCTT 0.587 31 20 RNF125 54941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29648291 29648291 + Nonsense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTCTTATCCGAAGAGTCTT 0.338 33 32 PALM 5064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 746408 746408 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGGCCGGGGCGGCAGAGACC 0.726 19 37 SHD 56961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 4290594 4290594 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGAGCATCTGGCTCTGCTGT 0.662 45 101 DUS3L 56931 hgsc.bcm.edu;broad.mit.edu 37 19 5786850 5786850 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGAGAGCGGCCGTGGAGCTGG 0.642 12 22 VAV1 7409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6772867 6772867 + Missense_Mutation SNP C C G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGCCGGGTGCTGCCGCCCAG 0.677 18 89 PNPLA6 10908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7619474 7619474 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTGGCTGGCCCAGCAGGAGG 0.652 27 81 FBN3 84467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8188415 8188415 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTGCCCACCGTGTTTCTGC 0.607 41 41 MYO1F 4542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8601249 8601249 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCACGCCACCGCGGCCACGTC 0.647 59 80 ZNF559 84527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9453655 9453655 + Nonsense_Mutation SNP C C T rs147456906 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATATCTTATTCGACATCTAAG 0.438 38 99 ZGLP1 100125288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10419252 10419252 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGGGGTCACGTTTTCTTGGG 0.617 14 24 CNN1 1264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11660568 11660568 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGGTGAGCCCGCCCACAACC 0.632 29 145 MAN2B1 4125 hgsc.bcm.edu;broad.mit.edu 37 19 12768302 12768302 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGCGTAGTCGTTGGCCACGT 0.682 5 3 TNPO2 30000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12817117 12817117 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACAAGGGTGTCCAGGATGTAG 0.587 23 76 SLC1A6 6511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15072860 15072860 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGAGGCTGTCGAAGAAGTCC 0.572 82 114 PGLYRP2 114770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15580456 15580456 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTGAAGTGCGGCCAGGTGCG 0.721 13 14 OR10H1 26539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15918656 15918656 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGAGAGGGCGCACAGGAAGA 0.642 53 123 CTB-52I2.8 0 hgsc.bcm.edu;broad.mit.edu 37 19 18092920 18092920 + RNA SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCCTGGACCGTGCGCGTCTG 0.652 13 7 TSSK6 83983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 19625703 19625703 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTCGGGTGACGCGTAGGCGG 0.662 9 50 CILP2 148113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 19655182 19655182 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTGACGTTCGTGGACCCCCG 0.692 89 193 CD22 933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 35823774 35823774 + Missense_Mutation SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGGGCTGAGGATGGAGTCC 0.542 21 77 WBP7 9757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36216664 36216664 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCATACCACCCGGCCTGTCTG 0.602 5 15 LGALS4 3960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39299582 39299582 + Silent SNP G G A rs140167180 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAAGTTCACGAAGAACCTGG 0.642 7 21 NCCRP1 342897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39691350 39691350 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGCTGCGGCGGACACGGGTG 0.632 220 295 PRX 57716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40913824 40913824 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCGGCACTCCGGCTCCTGGCC 0.627 25 69 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42912409 42912409 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCGTTTGTAGTGCTCCCCGA 0.627 49 247 PPP1R13L 10848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45885827 45885827 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCGTGCAGCGCGGCCCACC 0.697 33 112 PGLYRP1 8993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 46522887 46522887 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATACGAGCCCGTCTTCTCCAA 0.592 31 38 GRIN2D 2906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 48908573 48908573 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGACTGTCGCGCCCAGAACCG 0.652 19 8 TSKS 60385 hgsc.bcm.edu;broad.mit.edu 37 19 50265270 50265270 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCAGGATTTCCGTGATGTCTG 0.622 9 119 SPIB 6689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50926144 50926144 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTTCGACCCGGCAGCAGCCG 0.662 50 148 ZNF841 284371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 52569526 52569526 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTTTCTCTCCGGTATGAATT 0.398 10 27 LILRB4 11006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55175317 55175317 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGGAGTACCGTCTGGATAAA 0.587 89 123 NLRP7 199713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55451430 55451430 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAAGGCCATCGACCACGAAC 0.567 100 107 NLRP2 55655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55493635 55493635 + Missense_Mutation SNP A A T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGAGATACAAGATGCTGATC 0.542 56 189 NLRP2 55655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55494882 55494882 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGGAGCTCCTCGGCTGTCT 0.517 35 47 ZSCAN18 65982 hgsc.bcm.edu;broad.mit.edu 37 19 58596148 58596148 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGCGGGTGGACGGTTGGGGGC 0.726 5 12 MMEL1 79258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 2541236 2541236 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACACGGTTCCGTGGTCGGGT 0.602 52 97 CHD5 26038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6202326 6202326 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTCAAACTCGCGTTCCCAGT 0.607 69 113 ICMT 23463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6285295 6285295 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCATAGCTGACGCCGCAGATG 0.517 49 96 DNAJC11 55735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6697342 6697342 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCACCTTCTCGCTCTTCCTGC 0.567 68 154 RERE 473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 8674675 8674675 + Missense_Mutation SNP G G A rs142313428 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGATGCCACCGGCAGAGAGCA 0.488 48 181 DNAJC16 23341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 15874846 15874846 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATGACAAGGCGGTACAACAT 0.428 36 44 SPEN 23013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 16202978 16202978 + Missense_Mutation SNP G G A rs139125517 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGGAGGTACGAGGCAGAAGG 0.542 48 106 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19501461 19501461 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAATCAAGTCGGTTCAAATC 0.438 59 125 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22166340 22166340 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAAGGTGGCCGTGTGTCCAG 0.627 84 104 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22168798 22168798 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGCCTGGGCCGCTGGCTGCA 0.642 13 67 HTR1D 3352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 23519885 23519885 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGATTTTCACGTGGTTGAAAA 0.567 85 109 EXTL1 2134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26349416 26349416 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTGCAGGGGCGATGGCCTTA 0.542 29 145 TRIM63 84676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26387782 26387782 + Missense_Mutation SNP C C T rs139426966 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCTCATCTTCGTGCTCCTTG 0.582 24 89 PHC2 1912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 33837953 33837953 + Silent SNP G G A rs145356735 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGAGCGCCGCGGTCTGCAGCA 0.667 42 62 CSMD2 114784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 34180250 34180250 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGATGCGGGCGGTGCCCTCC 0.632 136 251 ZNF691 51058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43317024 43317024 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGCACGAGCGGATCCACCTG 0.562 40 62 TIE1 7075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43779639 43779639 + Splice_Site SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTCAGGCTCGGTCAGTGACC 0.577 28 53 PTPRF 5792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 44056971 44056971 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCATGCTGAGCGCCAGCACCA 0.726 6 6 RAD54L 8438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 46739410 46739410 + Missense_Mutation SNP G G A rs144207599 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGCTGTGCCGTGCCCGAAGG 0.512 7 14 DMRTB1 63948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 53925205 53925205 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAGGGACACGCGGGCAAATG 0.612 20 43 DHCR24 1718 hgsc.bcm.edu;broad.mit.edu 37 1 55337128 55337128 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTGGGACTCGTGGGTGAACT 0.592 8 105 FAM73A 374986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78280851 78280851 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAGCCTATCGTCTCCAAGAG 0.368 10 72 ZNF644 84146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 91382483 91382483 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACAATATGTCGTTGTAAGTGC 0.423 28 55 ABCA4 24 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 94512531 94512531 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTGGTTCTCGTAGAAGGTGA 0.552 129 198 ALG14 199857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 95492780 95492780 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAACCTCCCGGCTTCTTGGA 0.453 32 61 TRMT13 54482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 100606421 100606421 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTATTTTAGGTAACATTGAA 0.338 17 49 CELSR2 1952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 109801232 109801232 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCGGACCACGTGGTGGTCT 0.716 7 15 CHIA 27159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 111857960 111857960 + Missense_Mutation SNP G G A rs140031055 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAATTCCTGCGCCAGTATGAG 0.547 90 187 FAM46C 54855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 118166435 118166435 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGTGGTGAACGAGAGCACCG 0.527 47 70 ITGA10 8515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 145534934 145534934 + Nonsense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTACTTTGGCCGAAGTGTGGA 0.582 39 223 ANXA9 8416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 150967084 150967084 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTCCTGATTCGCATCCTTATC 0.468 129 222 SEMA6C 10500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 151105813 151105813 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGAGAGAGGGCGCGGGAGCCC 0.726 11 30 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152282395 152282395 + Missense_Mutation SNP C C T rs139975241 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCTGCATGACGAGTGCCTGA 0.567 246 486 PGLYRP3 114771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 153276410 153276410 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATACCTGGGCGACAGGTGACC 0.552 55 59 RRNAD1 51093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 156702140 156702140 + Missense_Mutation SNP C C T rs147288369 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCTTTACCCGGATGCCTGG 0.592 48 98 SLAMF8 56833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 159802792 159802792 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TATAGCTGGCGACGGGAGACA 0.542 26 153 CCDC181 57821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 169364358 169364358 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGTTTAGAACGCTTAGCTTC 0.398 42 61 SLC9C2 284525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 173551052 173551052 + Missense_Mutation SNP C C T rs4916373 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGCTAAAAACGTCAGCCAAT 0.323 28 33 DARS2 55157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 173826739 173826739 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGGGGACATGACCTCATGAG 0.483 33 135 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 175097740 175097740 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTGGTGCCCGTTTCCCACAC 0.527 40 155 SOAT1 6646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 179310292 179310292 + Silent SNP C C G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGCCACTGGCTATAGCAAGA 0.428 103 208 PTGS2 5743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186645692 186645692 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGTGTTCCCGCAGCCAGATT 0.507 74 104 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 198671623 198671623 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTACCTGCACGCACCTCCAA 0.498 144 298 IGFN1 91156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201184276 201184276 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCCTGACCGTCCAGGGTAA 0.587 26 40 ELF3 1999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201982319 201982319 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATGGTTTTCGTGACTGCAAG 0.597 44 63 ADIPOR1 51094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 202914187 202914187 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGCAGAGCACTGCACCCAAA 0.448 52 83 FMOD 2331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 203311549 203311549 + Silent SNP G G A rs142981560 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTCGTTCCCGTCCAGGCGCA 0.642 32 56 DSTYK 25778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 205138721 205138721 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGATCTTTCGCTCTCCATTC 0.483 17 77 RAB7L1 8934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 205740772 205740772 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAGGTGAAGCGCTCCTGCCC 0.517 62 98 CR1 1378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207793265 207793265 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATGGAATCTCGAAGGAGTTAG 0.363 7 15 CR1 1378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207793369 207793369 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGTGCCAGGCGGATGACAGA 0.468 29 39 MARK1 4139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 220791991 220791991 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGCGAGAGCGAGTTTTACGA 0.353 34 81 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 228471282 228471282 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGTGCAAGACGGAGCACCCC 0.632 31 55 SIPA1L2 57568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 232574983 232574983 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAGACGTCGGCAGCATCAGC 0.667 12 155 KIF26B 55083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 245848743 245848743 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGCTCCTGCGAAGAAGGCCG 0.652 20 38 PCED1A 64773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 2820527 2820527 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCGGGCGGCGCGGCTCCTC 0.637 35 45 BFSP1 631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 17489628 17489628 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCCGCTCCGTCAGGAGCTT 0.647 13 18 PLAGL2 5326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 30789887 30789887 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCGCCTCCCGGCCCCGAGG 0.567 32 119 DNMT3B 1789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 31368261 31368261 + Silent SNP G G A rs138805251 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCGCACCCCGGAGATCAGAG 0.652 14 43 BPIFB4 149954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 31671678 31671678 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGGCATCACGGGGTAAGGAG 0.627 44 59 DYNLRB1 83658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 33122560 33122560 + Nonsense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCTTCCTTCGAATTCGCTC 0.537 51 66 EPB41L1 2036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 34770234 34770234 + Silent SNP G G A rs139137163 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTTCTACCCGCCTGATCCTG 0.582 44 87 DHX35 60625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 37659354 37659354 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGGACCATCCGTGATGACCA 0.438 41 118 SLC13A3 64849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 45217829 45217829 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTATTCTTCCCGAATTACAGC 0.502 26 145 PREX1 57580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 47266679 47266679 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCACACAGCGGGTGGGGCT 0.592 82 177 CDH4 1002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60503309 60503309 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAACGACAACGCCCCTGAGC 0.627 89 408 CDH4 1002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60504690 60504690 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACTCAGCTTGCGCATCCTGTA 0.532 37 111 LAMA5 3911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60905854 60905854 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTGGGGGGCCGAGGTCGGGG 0.697 4 8 SLCO4A1 28231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 61288352 61288352 + Silent SNP G G A rs147575435 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTATGGGCACGGGGTCGCTGG 0.687 13 106 HELZ2 85441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 62195519 62195519 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTGCCACCGCAGAGGCGTGA 0.647 14 39 ABHD16B 140701 hgsc.bcm.edu;broad.mit.edu 37 20 62493215 62493215 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCGCTGGGCCGCTGGCTCGT 0.741 13 10 SON 6651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 34923567 34923567 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGGTGCCCTCGACGACAGCG 0.557 27 101 PRDM15 63977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 43230535 43230535 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGCATGTGTCGGCTCATGGA 0.682 33 28 ICOSLG 23308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 45651221 45651221 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCACCGCCACGACCACAAGCA 0.567 58 73 SLC19A1 6573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 46951531 46951531 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCCGCAGGGCGTGTCCCAGC 0.716 70 67 SLC19A1 6573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 46951822 46951822 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGGGCCGCACGAGAGAGAAG 0.667 6 9 COL6A1 1291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 47423450 47423450 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGCCCACGACGTGCGGGTGG 0.711 23 69 DIP2A 23181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 47916995 47916995 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGTGCATTCGTCTGTGGAAA 0.453 19 18 IL17RA 23765 hgsc.bcm.edu;broad.mit.edu 37 22 17589817 17589817 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTCCGCGCCGCCCTGGACAG 0.677 7 36 MICAL3 57553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 18387494 18387494 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGATGCAAGACGTTGTTGCGG 0.522 36 272 ARVCF 421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 19960526 19960526 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTGCAGCACGTGTGACGCCG 0.672 50 176 PI4KA 5297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 21082106 21082106 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGTCCAACCGAACGAGACGG 0.547 56 93 PPIL2 23759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 22048118 22048118 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATCACGTTTCGCTCCTGTGC 0.602 133 178 CABIN1 23523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 24479228 24479228 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGAAGACACGCACCCTTACA 0.582 40 52 SUSD2 56241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 24581087 24581087 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGACCAACGACCACGCACT 0.672 29 61 MYO18B 84700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 26164580 26164580 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCACTGAAAAAAGGCGAGGA 0.617 4 17 INPP5J 27124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 31522443 31522443 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGGTGGTGACGACAGCGACG 0.657 125 212 ELFN2 114794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37770333 37770333 + Silent SNP G G A rs144585839 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTAGTACACGGCTCCCAGCA 0.607 58 128 MFNG 4242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37882079 37882079 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGGGGCCCCGGGTTCGGCTG 0.632 26 143 SH3BP1 23616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 38051660 38051660 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTCAGCCCCGCCCCAGGAGC 0.677 9 9 CACNA1I 8911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 40043868 40043868 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 gaGACATCTCGGAAGCCGGCA 0.562 34 76 TNRC6B 23112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 40662440 40662440 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGAGGTGGACGCCAGCCCAA 0.502 11 22 SGSM3 27352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 40803287 40803287 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCATCCTGCGCGTGGCACGCC 0.617 44 91 L3MBTL2 83746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 41620136 41620136 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATCGGGGGTCGCCTACGGCTC 0.607 49 95 CELSR1 9620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 46806347 46806347 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATTTTTGCCGTCGACTGACA 0.632 78 152 PPP6R2 9701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50882544 50882544 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGACAAAGGACGGGTGAGCAG 0.667 46 115 TYMP 1890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50967656 50967656 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGCTGCTGGCGCCAGGCCTC 0.642 40 94 PXDN 7837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 1684083 1684083 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGCAAATCCGCCAACCACA 0.587 23 25 DNMT3A 1788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 25464537 25464537 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCAATGTAGCGGTCCACCTG 0.627 31 30 HADHA 3030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26414365 26414365 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCAGACAAGGCGGGAAGCCAA 0.552 48 44 OTOF 9381 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26700618 26700618 + Splice_Site SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCTTCTTCCTGTGAATCAG 0.607 23 45 TRIM54 57159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27529116 27529116 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGCAGGGCGGCCGGAGCCA 0.642 51 115 PLB1 151056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 28785936 28785936 + Silent SNP C C T rs147698393 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGACATCAACGTAATTGGAG 0.488 20 98 FAM179A 165186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 29240816 29240816 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCCCGCCACGCCTCAGGTGG 0.672 15 34 SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 45812861 45812861 + Missense_Mutation SNP C C T rs145594682 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATTAAAGAGACGAATGATGTT 0.323 38 93 EPAS1 2034 hgsc.bcm.edu;broad.mit.edu 37 2 46574124 46574124 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCCCACAGTGTGAGCTCCCA 0.617 15 229 CLEC4F 165530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 71043766 71043766 + Silent SNP G G A rs142908853 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCATTAGCGTTCTTTAAAC 0.418 32 100 CYP26B1 56603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 72359683 72359683 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTTGAACACGGGCGCTGTGT 0.612 23 38 DCTN1 1639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 74595114 74595114 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAGCGGTGTAGCGTGGCCTGC 0.607 26 102 TLX2 3196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 74742798 74742798 + Missense_Mutation SNP C C A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGCATAGGCCACCCCTACCA 0.652 40 135 HK2 3099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 75107689 75107689 + Silent SNP C C T rs144796715 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTACCCCGGACGGCACAGGTA 0.577 11 32 TCF7L1 83439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 85531438 85531438 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCCCGCCCTCGCCATGAACG 0.592 81 82 REV1 51455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 100022891 100022891 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AACTGATGGGCGACTGGGACA 0.453 23 43 IL18R1 8809 hgsc.bcm.edu;broad.mit.edu 37 2 103013337 103013337 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGTTCTTTCCGAGTCTTAAT 0.413 20 44 RANBP2 5903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 109383056 109383056 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAAATGCCCGAAAAAGTAGA 0.388 325 387 POLR1B 84172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 113322007 113322007 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCTGCTGGACGGTGTCATGG 0.502 76 146 TMEM177 80775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 120439264 120439264 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGGAACATCGTCCCCAGACA 0.582 99 98 R3HDM1 23518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 136481617 136481617 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGGTGGCTCCGGGACCCCCA 0.542 98 89 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu 37 2 141816539 141816539 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCATTAAATCGGTTTATCCTT 0.328 7 93 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170022532 170022532 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGTCACACCGGAAACGGTTT 0.388 88 110 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170060607 170060607 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAAATTTGTGGTCATTGCAA 0.448 76 325 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179412628 179412628 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGGGCAGGACGACCACTGAT 0.448 27 52 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179430304 179430304 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCCTTGACACGGAACTGATA 0.418 79 225 TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179604439 179604439 + Missense_Mutation SNP C C A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAAAGAATCCATTTCTTCTT 0.388 33 234 HECW2 57520 hgsc.bcm.edu;broad.mit.edu 37 2 197183524 197183524 + Missense_Mutation SNP G G A rs139251909 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGATTCCTGCGACCCTTCGGC 0.612 7 117 BZW1 9689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 201683504 201683504 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGAGGAGATGAAAAAAAACA 0.373 19 33 CD28 940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 204599561 204599561 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGACTCCCCGCCGCCCCGG 0.597 87 191 NDUFS1 4719 hgsc.bcm.edu;ucsc.edu 37 2 207008820 207008820 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCATTGGCTCGGTAAGTCTTT 0.368 28 105 ABCA12 26154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 215809802 215809802 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTTCGACTTCGGATCCATGC 0.363 32 33 ATIC 471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 216209588 216209588 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGCCAAGAACGGGCAGGTAA 0.488 30 66 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 220334066 220334066 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AATGGCCACCGCATCCAGAGC 0.642 42 41 CCL20 6364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 228678691 228678691 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCACCTCTGCGGCGAATCAGA 0.473 26 303 HTR2B 3357 hgsc.bcm.edu;ucsc.edu 37 2 231973425 231973425 + Missense_Mutation SNP G G A rs148411901 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATTGGATTCCGGAAGTAGATC 0.438 37 92 DIS3L2 129563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 233128091 233128091 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAATCTCCACGGAATTGCCAA 0.522 17 144 CHRNG 1146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 233405401 233405401 + Silent SNP G G A rs149931943 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGTGGCGGCCGGATATCGTGC 0.642 24 14 DGKD 8527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234371341 234371341 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAGCTCTGCGCAGTGAGACG 0.597 46 280 UGT1A8 54576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234526381 234526381 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GACCAGCCCCATTCCCCTATG 0.572 61 72 HDAC4 9759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 239975226 239975226 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTTCGTTCTCGCAAGTCTGA 0.662 53 65 ANKMY1 51281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241468876 241468876 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCTGCCATCGGGGTAGGTCT 0.602 28 59 GPR35 2859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241570136 241570136 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGATCCGTCGCGCCCTGTAC 0.622 129 159 KIF1A 547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241680733 241680733 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCAGCAGGTCGTACTTGCAGT 0.662 12 17 ANO7 50636 hgsc.bcm.edu;broad.mit.edu 37 2 242148714 242148714 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCGGCTGTTCGACCACGGCG 0.647 4 13 STK25 10494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 242437037 242437037 + Silent SNP G G A rs67879108 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCACCTCTCCGAAGACGGGCC 0.657 105 113 NR2C2 7182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 15065637 15065637 + Silent SNP T T A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGGTCTTCTTGATCCAGGGA 0.438 31 101 DCLK3 85443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 36779958 36779958 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTGCAACTTCGCTGCAGCTC 0.612 180 53 MLH1 4292 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 37038172 37038172 + Missense_Mutation SNP A A C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGTTGATTCAGATCCAAGAC 0.413 52 12 PRSS50 29122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 46759103 46759103 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCGCCCCCGGGGCTTCCCC 0.706 37 13 BSN 8927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 49699985 49699985 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGTGGTTTCCGACAGCGAAG 0.597 80 30 SEMA3F 6405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 50224060 50224060 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAGAATGCCGTGGAGTCTGT 0.627 26 81 IFRD2 7866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 50326252 50326252 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGCACGGCGCGGAAAGTAG 0.602 26 9 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52380763 52380763 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTGGGGTGACGACTTAATTA 0.602 28 9 FLNB 2317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 58108831 58108831 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAAGGCCCACGGTCCCGGCC 0.542 35 166 ADAMTS9 56999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 64536656 64536656 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACGTCACAGCGTGCCCCATG 0.552 164 73 ADCY5 111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 123036943 123036943 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACCAAATCGGTCGTCTACC 0.602 41 14 ACAD11 84129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 132361582 132361582 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGTACAGTATAGGCTTGGG 0.328 118 36 ZBTB38 253461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 141163946 141163946 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTCGATGACGCAAGTGACCA 0.502 49 18 ZBTB38 253461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 141164403 141164403 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAACATGAACGCATCCACCTG 0.478 75 36 AADACL2 344752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 151461914 151461914 + Missense_Mutation SNP C C T rs145856421 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AATAGATGGACGGCAAACACG 0.358 85 28 MCCC1 56922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 182740306 182740306 + Missense_Mutation SNP A A G rs143892743 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCTCGCTGTAAAGATTACCA 0.313 16 62 NOP14 8602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 2943380 2943380 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCATGATGGCGTGGAAGGAT 0.662 22 34 GRK4 2868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 3037185 3037185 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGCACCCCGTGTTCAAGGA 0.582 67 132 MAN2B2 23324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 6588894 6588894 + Splice_Site SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGGAGGCCCGGGTGAGTGGT 0.642 23 45 HTRA3 94031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 8293224 8293224 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACTGCCCAGCGGGAGGGCAGG 0.657 38 43 DRD5 1816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 9783925 9783925 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTTTCGTGGCGCTGCTGGTC 0.632 25 125 PACRGL 133015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 20715162 20715162 + Splice_Site SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCTTACAAGCGTAAGTACTG 0.373 36 57 STAP1 26228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 68447189 68447189 + Splice_Site SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTATGCCAGCGTAAGTGCAC 0.393 68 151 UGT2B11 10720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 70079942 70079942 + Missense_Mutation SNP G G A rs148268917 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TACACAAACCGTATGTTAAGT 0.418 59 108 SHROOM3 57619 hgsc.bcm.edu;broad.mit.edu 37 4 77662039 77662039 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCCGAGTGGCGGGACAGGCC 0.711 12 20 BMP2K 55589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 79793824 79793824 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AACATCAGCCGTCTCAACAAC 0.443 37 67 PRKG2 5593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 82026998 82026998 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCTCAGGTCGTCGTGTTATC 0.423 31 131 EGF 1950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 110915913 110915913 + Missense_Mutation SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTCACCTCAGGGAAGATGAC 0.428 36 177 TRPC3 7222 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 122835949 122835949 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGCAAGGTGCGATCCAGTAG 0.483 29 52 SLC25A31 83447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 128651877 128651877 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGATCAGCCCCGAGGCGCGGT 0.701 39 54 LRBA 987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 151829999 151829999 + Missense_Mutation SNP T T G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCTTTGAATTTAAATGTACC 0.363 20 70 LRBA 987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 151850067 151850067 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAAGATTCCGTATGCTTTTC 0.388 34 165 SFRP2 6423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 154709690 154709690 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGACGGGGGCGAAGAGCGAG 0.647 40 228 FGB 2244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155490927 155490927 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCTTCAGCACGTATGACAGA 0.423 50 91 ACSL1 2180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 185724474 185724474 + Splice_Site SNP C C A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCACTCACCGCCACTTCCA 0.557 13 17 AGXT2 64902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 34998924 34998924 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGCGCAATGCGAAATGTCTG 0.368 28 39 CARD6 84674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 40854138 40854138 + Missense_Mutation SNP G G C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTTCAACCAGCAGCAGCCAC 0.483 76 127 MIER3 166968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 56231270 56231270 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCATTACCATCGTACTCTCCA 0.313 29 140 CENPK 64105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 64814369 64814369 + Missense_Mutation SNP C C T rs147863579 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AATTCCATTACGCAGCAGCAG 0.353 36 90 SLC30A5 64924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 68413208 68413208 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAGCCACTCGGATTTTCTCC 0.413 66 102 MARVELD2 153562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 68716104 68716104 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGAATTAACGTTGCCTTGTT 0.423 61 121 PDE8B 8622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 76649192 76649192 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATTTTGTCTCGCTCAAGAAAC 0.368 28 51 ZCCHC9 84240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 80604490 80604490 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCACAGAGCACGAAATAACCA 0.448 42 62 KIF3A 11127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 132051569 132051569 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGGCATACCGTAATGTACTG 0.328 7 24 TMCO6 55374 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140021557 140021557 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCACTCCGAGCAGTCCACTG 0.617 36 175 PCDHA6 56142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140209817 140209817 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGTCCTCACGCTACTGCTG 0.706 87 141 ARAP3 64411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 141035270 141035270 + Missense_Mutation SNP C C T rs138515824 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAACTTCTGACGGGCAAGGTC 0.597 41 70 SYNPO 11346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150029450 150029450 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCCCAGCCCGGACCCCGCCT 0.687 59 230 SLC36A1 206358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150856223 150856223 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGGTCATCGTCACCATCCT 0.517 58 90 GPRIN1 114787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 176025905 176025905 + Nonsense_Mutation SNP C C A rs147380779 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTGTCTTTCCTGTGGACGCA 0.572 66 126 SNCB 6620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 176056600 176056600 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTTTTCTCCGCGGCTGCCAC 0.677 13 55 ADAMTS2 9509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 178566910 178566910 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCACACTGGCGGGTCCTGAAC 0.642 115 170 HNRNPH1 3187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 179043155 179043155 + Silent SNP G G A rs115293737 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTGGCCACCGTAGCCGCCTC 0.473 41 282 MAPK9 5601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 179676062 179676062 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTAGTGCACGCTGTCCGGGC 0.498 128 162 FLT4 2324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 180046723 180046723 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCCGAAAGCGGAGGCTTCCA 0.657 93 198 TMEM14C 51522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 10725225 10725225 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTTGGCTACGCAGCACTGGT 0.448 103 328 ABCF1 23 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 30552327 30552327 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGCGCATGCGTGTCTCCCT 0.612 39 43 FGD2 221472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 36978766 36978766 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAAGAAGATCGTCCAGGAGC 0.612 15 81 PEX3 8504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 143793364 143793364 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGAAATCTCGTTGAGCAGCA 0.348 45 21 WTAP 9589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 160176453 160176453 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAACTCAGTGCGGGGTATGAA 0.483 36 66 FRMD1 79981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 168463623 168463623 + Missense_Mutation SNP C C T rs115999698 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACGGTGGGACGACCTTCCTT 0.622 32 65 FAM120B 84498 hgsc.bcm.edu;broad.mit.edu 37 6 170626760 170626760 + Missense_Mutation SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCATGGTGGAGCAGGATAAGA 0.443 7 101 FBXL18 80028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 5540761 5540761 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGCAGGACGCCACCAGAGT 0.687 23 116 HOXA1 3198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 27135248 27135248 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTTGGACCACAACTTGAGTG 0.612 32 167 GGCT 79017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 30538452 30538452 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGCACTTTCGTAATTTGTCA 0.338 65 105 HECW1 23072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 43484733 43484733 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCCCAGCACCGGGAGCGAGA 0.716 35 54 TMEM248 55069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 66415965 66415965 + Missense_Mutation SNP C C T rs143613938 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTCCTGACACGTACAGCAAC 0.522 65 323 FKBP6 8468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 72754699 72754699 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGTGGAGGCCGCCAAGCTTC 0.572 25 128 MLXIPL 51085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 73013863 73013863 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCTGCAGACGGCTGTGTCC 0.632 53 102 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 82584436 82584436 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCATACAAAGGCTCTTTTTCA 0.373 13 76 SEMA3A 10371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 83823817 83823817 + Missense_Mutation SNP A A G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGCCTTGGCACATTGTTCTT 0.418 29 230 AKAP9 10142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 91737807 91737807 + Splice_Site SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAATCCTTTAGGTACCCAGGC 0.423 18 104 FBXL13 222235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 102669158 102669158 + Missense_Mutation SNP C C T rs147832645 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGCCAGGACGACATTTTCA 0.343 36 48 TFEC 22797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 115590971 115590971 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCTTGATTCGGTAATTAATA 0.299 15 51 CADPS2 93664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 121965555 121965555 + Silent SNP C C G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAGCGTCTTCAGCTGGTAAA 0.398 10 16 FLNC 2318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128483620 128483620 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAGTACACCGCTGTCCAGCA 0.612 47 89 MGAM 8972 hgsc.bcm.edu;broad.mit.edu 37 7 141724872 141724872 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGTATGGTGCGCAGACATTC 0.398 23 51 NOBOX 135935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 144096159 144096159 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGGAAGATCGGCCCTTCGCA 0.632 11 28 CNTNAP2 26047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 147600796 147600796 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTAACTGCGACGCGGACTACA 0.537 17 32 HTR5A 3361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 154862918 154862918 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGAGCTGTCCGGGCGCCGCT 0.677 41 61 RBM33 155435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 155457901 155457901 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TAAGCCTGGCGCGGAACGGTC 0.453 47 79 MCPH1 79648 hgsc.bcm.edu;ucsc.edu 37 8 6479016 6479016 + Silent SNP C C T rs35999761 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCGTACCGCGGAACCCTCT 0.617 32 51 DMTN 2039 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 21926949 21926949 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GACAGCCGGTCGCCTGGAATC 0.657 18 39 BMP1 649 hgsc.bcm.edu;broad.mit.edu 37 8 22037987 22037987 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGTCACACCCGGGGAGAAGG 0.612 56 88 KIF13B 23303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 28989840 28989840 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCGAAGACTACGTGTCTTTGC 0.388 34 81 HTRA4 203100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 38840023 38840023 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCAGGAAAGGCGTTTTCAAAT 0.428 20 53 ANK1 286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 41554024 41554024 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGTCCGTGGCGGGATCACCA 0.677 27 53 PI15 51050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 75737579 75737579 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GACTCATCCCCGCCAACCAAT 0.478 57 98 RUNX1T1 862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 92972726 92972726 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACTCGCTTTACGGCCACAATT 0.458 25 43 COL22A1 169044 hgsc.bcm.edu;ucsc.edu 37 8 139890478 139890478 + Missense_Mutation SNP C C A rs149836216 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACCCACTGCCGGACCTTCTC 0.647 5 7 AGO2 27161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 141595388 141595388 + Silent SNP C C T rs141930048 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGATGGGGGGCGGCGGCGCAG 0.592 33 68 GPR20 2843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 142367203 142367203 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACGAGGCTCGTGTGGTGTGG 0.637 12 47 ARC 23237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 143694472 143694472 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACTGGCCACGGACTCGCTGT 0.701 12 13 ZFP41 286128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144332526 144332526 + Silent SNP C C T rs149671213 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGAAGCCCTACGAATGCACGC 0.592 40 116 ZFP41 286128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144332534 144332534 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TACGAATGCACGCACTGTGGG 0.592 42 116 PLEC 5339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144991396 144991396 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGCCCGGAGCGGCGGTCGAT 0.637 24 48 PLEC 5339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144999421 144999421 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGCCGCGCTCGCTCCACCTC 0.741 4 18 PARP10 84875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145058234 145058234 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGTGTGGGCGTTGCCAGGGA 0.662 14 39 KDM4C 23081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 6990511 6990511 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCAGCAGGCGCCAAGTGATG 0.408 6 33 TRPM6 140803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 77390827 77390827 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTCTTGGTCGTGAGGAGCTC 0.537 70 117 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 84607751 84607751 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGCATGGTCCGGAGACTTCT 0.478 49 102 KIF27 55582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 86465050 86465050 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATCTTTTGTTCGTGTTCCTTT 0.423 40 181 ZCCHC6 79670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 88967854 88967854 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCATCCAAGCGGGTTGACTGT 0.433 97 208 SEMA4D 10507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 91993634 91993634 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCCATCTGCGTCTGAGTCAG 0.582 32 42 FGD3 89846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 95738979 95738979 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACAAGGATGCCGGCCTGGCCC 0.637 13 36 PTPN3 5774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 112166752 112166752 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACCGTCCCGCTTTCGAGGC 0.572 50 76 ZNF618 114991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 116811427 116811427 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGACAGTGTACGTGACGGATT 0.612 31 236 PAPPA 5069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 119097282 119097282 + Silent SNP C C A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCTCCGTTCCTTCGACAACT 0.642 69 140 CDK5RAP2 55755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 123215886 123215886 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCAGCAGGTCGCCCTCCGTG 0.552 102 175 CDK5RAP2 55755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 123253597 123253597 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAAGCAACACGTCCTTCTGAT 0.294 19 36 CNTRL 11064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 123858806 123858806 + Nonsense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAATCTTTGCGAGTCCTCAA 0.303 49 82 OR5C1 392391 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 125551233 125551233 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAACCTCACCCGGGCCGCGGT 0.582 30 151 CRB2 286204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 126128637 126128637 + Missense_Mutation SNP G G T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGCTGCCTCTGTTGGCCAGGT 0.736 17 26 SH2D3C 10044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 130511902 130511902 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTGAGTCCCGGATGAGGAAG 0.612 7 15 TRUB2 26995 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131072049 131072049 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAAGCCGTCGCGCGTGCGCCG 0.582 27 55 SPTAN1 6709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131388869 131388869 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGCTGGACCGCCAGATCAAG 0.582 14 65 FIBCD1 84929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 133780652 133780652 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCACGGTGAGCGGGTACCCGT 0.657 17 53 BRD3 8019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136910513 136910513 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGCCCTGTGCGTCTGGGTAC 0.592 45 257 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139401406 139401406 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTCGTCCACGTTGATCTCAC 0.672 16 26 CLIC3 9022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139889178 139889178 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGATCTCGGCGCTGTGCGGAC 0.677 22 26 TUBB4B 10383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140137526 140137526 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCGCTGACCGTGCCCGAGCT 0.657 31 117 EHMT1 79813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140706066 140706066 + Splice_Site SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGACTGTGTCGTGTGAGTGCA 0.642 43 55 ASMTL 8623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 1536976 1536976 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGGTACTCACGGGCCAGCTC 0.612 16 49 FANCB 2187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 14883271 14883271 + Missense_Mutation SNP C C T rs142289802 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAACTCAAACGCATTTCAAA 0.313 20 7 MAGEB6 158809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 26212350 26212350 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGCTGCCAACGGCCAAGATG 0.557 78 19 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 34149532 34149532 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGTGGGTTCGTCAGTTGTCT 0.577 13 30 RGN 9104 hgsc.bcm.edu;broad.mit.edu 37 X 46951573 46951573 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATGGACCCCGAGGGTCTTTT 0.463 12 2 CACNA1F 778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 49088267 49088267 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGTTTCTTCGCTTAGGGGTC 0.652 7 18 ARHGEF9 23229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 62857963 62857963 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGACTGGCTGCGCTTGGGTTC 0.493 8 17 ZMYM3 9203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70464210 70464210 + Missense_Mutation SNP C C A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGACTGCACCCAGCACTTCC 0.557 19 25 POF1B 79983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 84563165 84563165 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTCCTCCCGTATGTTGCTA 0.358 54 12 IL1RAPL2 26280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 104999270 104999270 + Missense_Mutation SNP T T A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTGAAGTACTGCCAGATGTC 0.378 34 112 MST4 51765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 131208175 131208175 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTCAGCAGACGAATCCCCCT 0.363 148 23 GDI1 2664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153670771 153670771 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTTGTGAGAGCCAGGTAAGC 0.612 133 34 DYSF 8291 broad.mit.edu;ucsc.edu 37 2 71753455 71753455 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAAGGTCTTCCGGGCCGAGGA 0.672 84 255 PTPRS 5802 broad.mit.edu;ucsc.edu 37 19 5244109 5244109 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCGGTAGCCGCGGATCAGGCC 0.682 36 174 ADAMTSL3 57188 broad.mit.edu;ucsc.edu 37 15 84651306 84651306 + Missense_Mutation SNP G G A rs150618994 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCTGCCCCCGACATCGGCGT 0.567 72 120 ZFYVE19 84936 broad.mit.edu;ucsc.edu 37 15 41102150 41102150 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCACGACTCCGCCAGGAGAA 0.602 45 74 PAPLN 89932 broad.mit.edu;ucsc.edu 37 14 73726060 73726060 + Missense_Mutation SNP G G A rs151048072 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCCAGGGGCGACCAAGGCAC 0.672 57 30 PTPRD 5789 broad.mit.edu;ucsc.edu 37 9 8636794 8636794 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGGCAACTCCGCCAGAGACC 0.413 51 101 XPOT 11260 broad.mit.edu;ucsc.edu 37 12 64811871 64811871 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTAGGGAGACGCTCATATCAT 0.323 35 79 PCSK7 9159 broad.mit.edu;ucsc.edu 37 11 117100140 117100140 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGACGCTGCGCTTGGCCCGC 0.617 50 182 ALMS1 7840 broad.mit.edu;ucsc.edu 37 2 73717091 73717091 + Nonsense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAAGGTCTTCGAATGCCATT 0.378 94 178 LRRK1 79705 broad.mit.edu;ucsc.edu 37 15 101567987 101567987 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAGGACTACGAGGACCTGCA 0.617 4 10 FBN3 84467 broad.mit.edu;ucsc.edu 37 19 8201185 8201185 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGTGCATTCGTCTACATCT 0.677 37 106 SNHG14 104472715 broad.mit.edu;ucsc.edu 37 15 25331678 25331678 + RNA SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGCGTGGATCGATGATGACT 0.453 49 207 ADRBK2 157 broad.mit.edu;ucsc.edu 37 22 26118335 26118335 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGTCGTGCCCCGAAGTTCCTC 0.542 38 135 C9orf152 0 broad.mit.edu;ucsc.edu 37 9 112963591 112963591 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTCCAGGTGCGTGTGCCATG 0.587 22 142 GGT6 124975 broad.mit.edu;ucsc.edu 37 17 4461802 4461802 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGGCGCCCCGGAGCGCAGGG 0.692 3 13 ANK1 286 broad.mit.edu;ucsc.edu 37 8 41577305 41577305 + Silent SNP G G A rs61758867 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCTCTGCGTCGTATTGCAACA 0.567 53 109 TAF4 6874 broad.mit.edu;ucsc.edu 37 20 60574065 60574065 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGATCTCCCGCTCCTGCTCA 0.557 177 284 TRPM6 140803 broad.mit.edu;ucsc.edu 37 9 77376996 77376996 + Missense_Mutation SNP G G A rs141526694 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGTATCTGCGGAGAGGATTG 0.423 42 73 FBXW12 285231 broad.mit.edu;ucsc.edu 37 3 48422276 48422276 + Missense_Mutation SNP G G A rs144607752 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATGTGCCAGCGCCTGCTGGAC 0.443 115 37 ZNF687 57592 broad.mit.edu;ucsc.edu 37 1 151261051 151261051 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCAGCTTCAGCGCCCACCAGC 0.572 52 120 CELSR1 9620 broad.mit.edu;ucsc.edu 37 22 46776725 46776725 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCTTGGTTCGCTCCTCCACC 0.667 23 105 ZFYVE28 57732 broad.mit.edu;ucsc.edu 37 4 2306942 2306942 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCTGCCCTCCGCTCCTGGCC 0.667 48 86 HEPH 9843 broad.mit.edu;ucsc.edu 37 X 65427138 65427138 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGATCCCTCGGCCAAGGACT 0.478 5 18 LPAR3 23566 broad.mit.edu;ucsc.edu 37 1 85331490 85331490 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGCCCCTGACGGAGAAACCA 0.502 157 220 AP5Z1 9907 broad.mit.edu;ucsc.edu 37 7 4824642 4824642 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGTGGCCTTCGAGTACTGCC 0.682 46 69 LPCAT2 54947 broad.mit.edu;ucsc.edu 37 16 55613052 55613052 + Missense_Mutation SNP C C T rs142090669 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCTACATAACGGAGGAAGAG 0.433 19 138 PITPNM2 57605 broad.mit.edu;ucsc.edu 37 12 123479976 123479976 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTATCCAGCTCGTAGGTGGAT 0.647 27 128 ODC1 4953 broad.mit.edu;ucsc.edu 37 2 10582006 10582006 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATCCATAGACGCCATCATTCA 0.378 35 253 CACNA1H 8912 broad.mit.edu;ucsc.edu 37 16 1250283 1250283 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCTGCGGCCGTACTACCAGA 0.632 3 27 DHX37 57647 broad.mit.edu;ucsc.edu 37 12 125434988 125434988 + Missense_Mutation SNP C C T rs146274723 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACACAGCACCCGCCCCCGCTC 0.657 27 34 KDM1A 23028 broad.mit.edu;ucsc.edu 37 1 23405541 23405541 + Silent SNP C C T rs145299191 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTTATAAATGCGACGCAGTTC 0.507 40 214 DGKK 139189 broad.mit.edu;ucsc.edu 37 X 50147116 50147116 + RNA SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCTGGGTCCGGTGGCTGTAA 0.438 19 9 KIAA0430 9665 broad.mit.edu;ucsc.edu 37 16 15711316 15711316 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CACACCAGCCGTCCGTTTCCT 0.512 17 57 PRSS55 203074 broad.mit.edu;ucsc.edu 37 8 10383214 10383214 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGAGCCCACCGCCCTCAGCCC 0.662 13 23 NPR3 4883 broad.mit.edu;ucsc.edu 37 5 32739001 32739001 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGACAAACACGACTTTGAAG 0.428 51 96 USP20 10868 broad.mit.edu;ucsc.edu 37 9 132631191 132631191 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGCAGCCCCGTCCACCACCA 0.672 17 101 IBA57 200205 broad.mit.edu;ucsc.edu 37 1 228362946 228362946 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGACGGCCCGCACCCACCAC 0.647 25 178 SSMEM1 136263 broad.mit.edu;ucsc.edu 37 7 129856218 129856218 + Nonsense_Mutation SNP C C T rs146470357 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACCATTCCCGACAGAAGCC 0.438 120 201 ZNF416 55659 broad.mit.edu;ucsc.edu 37 19 58084870 58084870 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTGAAAGACCGCACATGCCC 0.502 13 50 USP32 84669 broad.mit.edu;ucsc.edu 37 17 58259033 58259033 + Silent SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCCCAAAGTCCGTGGGCTGC 0.483 14 55 CXXC11 285093 broad.mit.edu;ucsc.edu 37 2 242815361 242815361 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTCCATGACCGTGTGCGTCTT 0.662 105 226 C6 729 broad.mit.edu;ucsc.edu 37 5 41159281 41159281 + Nonsense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGCATTCTCGGGTTCTCGAT 0.493 56 83 GPER 2852 broad.mit.edu;ucsc.edu 37 7 1132151 1132151 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGATCCTCGCGGTGGTGCT 0.687 51 97 OR51G1 79324 broad.mit.edu;ucsc.edu 37 11 4944910 4944910 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGATGAGGGCGTATGAGAGAA 0.547 26 90 TUBGCP2 10844 broad.mit.edu;ucsc.edu 37 10 135101799 135101799 + Missense_Mutation SNP T T C TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CATGAGGAAGTAGCGCTTGAT 0.682 15 55 TENM2 57451 broad.mit.edu;ucsc.edu 37 5 167689238 167689238 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CGGGTGACCACGGGCGTGTCC 0.572 3 11 TMEM156 80008 broad.mit.edu;ucsc.edu 37 4 38990512 38990512 + Missense_Mutation SNP C C T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAGTATTTTGCGGATAGTGAG 0.358 85 160 RP11-468E2.4 0 broad.mit.edu;ucsc.edu 37 14 24629769 24629769 + Missense_Mutation SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTATCCCCCGCAGGCGGAAG 0.562 23 16 SMYD1 150572 broad.mit.edu;ucsc.edu 37 2 88387390 88387390 + Silent SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCTGGCGGCGCGCATCATGT 0.607 14 19 TYW1B 441250 broad.mit.edu;ucsc.edu 37 7 72281140 72281140 + RNA SNP G G A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGCCAAATCGAAAATCAATG 0.448 100 141 CLIC4 25932 broad.mit.edu;hgsc.bcm.edu 37 1 25167273 25167273 + Frame_Shift_Del DEL A A - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGTGGTGGCCAAAAAATATCG 0.373 63 108 RNF220 55182 broad.mit.edu;hgsc.bcm.edu 37 1 45110396 45110397 + Frame_Shift_Del DEL AA AA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGCAGCGGCAAAGAGAACCCG 0.599 49 114 DBT 1629 broad.mit.edu;hgsc.bcm.edu 37 1 100684291 100684293 + In_Frame_Del DEL TCT TCT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCAACAACATCTTCTTCTGAAT 0.384 69 135 LCE1A 353131 broad.mit.edu;hgsc.bcm.edu 37 1 152800020 152800020 + Frame_Shift_Del DEL C C - rs4990424 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ctcccaagtgccccactccta 0.652 41 151 DISP1 84976 broad.mit.edu;hgsc.bcm.edu 37 1 223176292 223176293 + Frame_Shift_Del DEL TG TG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTTTAGTTATGTGTGTCTACA 0.361 30 142 PFN4 375189 broad.mit.edu;hgsc.bcm.edu 37 2 24344101 24344103 + In_Frame_Del DEL CTT CTT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAATACAGTCCTTCTCTTCGGGC 0.453 93 102 VPS54 51542 broad.mit.edu;hgsc.bcm.edu 37 2 64199337 64199339 + In_Frame_Del DEL AGG AGG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGTATCTTTAGGAGGACAAATA 0.286 14 46 FAHD2B 151313 broad.mit.edu;hgsc.bcm.edu 37 2 97749725 97749725 + Frame_Shift_Del DEL G G - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACCGACACCTGGGGGGGTCCC 0.552 16 53 POTEF 728378 broad.mit.edu;hgsc.bcm.edu 37 2 130872806 130872806 + Frame_Shift_Del DEL T T - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTGTCCTCTTTTTGTTGTC 0.403 34 143 POTEE 445582 broad.mit.edu;hgsc.bcm.edu 37 2 132021077 132021078 + Frame_Shift_Ins INS - - A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGAAAGTGTGAAAAAAAAGAA 0.416 19 42 TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179598102 179598102 + Frame_Shift_Del DEL T T - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTATTCGGTATTTTTTACTGG 0.468 86 108 HTR2B 3357 broad.mit.edu;hgsc.bcm.edu 37 2 231973400 231973401 + Frame_Shift_Del DEL TT TT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTGAAAAACTTAGAGTTCTCT 0.426 34 68 SLC9C1 285335 broad.mit.edu;hgsc.bcm.edu 37 3 112005610 112005610 + Frame_Shift_Del DEL A A - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTCAGTACTGAAAAAAAACTC 0.353 12 33 ZBTB20 26137 broad.mit.edu;hgsc.bcm.edu 37 3 114058003 114058003 + Frame_Shift_Del DEL G G - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGTGCCTGCAGGGGGGGTCCC 0.632 88 28 NPHP3 27031 broad.mit.edu;hgsc.bcm.edu 37 3 132403500 132403502 + In_Frame_Del DEL TTC TTC - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTTCATAAAGTTCTTCTGCTTTA 0.419 40 20 CDH10 1008 broad.mit.edu;hgsc.bcm.edu 37 5 24491704 24491706 + In_Frame_Del DEL GAG GAG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGATGATGCAGAGGAGGATGGCG 0.483 55 109 PPIP5K2 23262 broad.mit.edu;hgsc.bcm.edu 37 5 102537324 102537324 + Frame_Shift_Del DEL A A - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAACACTGGGAAAAAGAAATG 0.313 13 15 MCC 4163 broad.mit.edu;hgsc.bcm.edu 37 5 112363035 112363037 + In_Frame_Del DEL CTC CTC - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCTGGAGTTCTCCTCCTCTAGC 0.507 52 89 KDM3B 51780 broad.mit.edu;hgsc.bcm.edu 37 5 137721747 137721749 + In_Frame_Del DEL AAG AAG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCCAAAGGAAAGAAGAAGAGAG 0.419 65 142 PSD2 84249 broad.mit.edu;hgsc.bcm.edu 37 5 139189297 139189298 + Frame_Shift_Del DEL AA AA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AACATTCTGGAAGATTCAGCGG 0.619 77 148 PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu 37 5 140255597 140255601 + Frame_Shift_Del DEL TAAAA TAAAA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATTTTGAGCTTAAAATAAAAACAAA 0.366 20 81 HIGD2A 192286 broad.mit.edu;hgsc.bcm.edu 37 5 175815916 175815917 + Frame_Shift_Del DEL AG AG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACAGGAATCCAGAGAGTTTCAA 0.564 94 153 SNAP91 9892 broad.mit.edu;hgsc.bcm.edu 37 6 84417562 84417563 + Frame_Shift_Ins INS - - T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGAGTAGTGGCTTTGCAGACCG 0.559 98 59 FKBP9 11328 broad.mit.edu;hgsc.bcm.edu 37 7 33014804 33014804 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGTGTGATCCCCCCCAATT 0.443 34 72 MCM7 4176 broad.mit.edu;hgsc.bcm.edu 37 7 99690987 99690989 + In_Frame_Del DEL TCT TCT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCATTCACATCTTCTTTCTCCA 0.527 107 207 SLC13A4 26266 broad.mit.edu;hgsc.bcm.edu 37 7 135375977 135375977 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCATAGCCTCCCCCAACCAG 0.507 36 62 SLC4A2 6522 broad.mit.edu;hgsc.bcm.edu 37 7 150761737 150761737 + Frame_Shift_Del DEL G G - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAGCCTCCCCGACTGGAGAAA 0.687 35 60 CLU 1191 broad.mit.edu;hgsc.bcm.edu 37 8 27468075 27468076 + Frame_Shift_Del DEL AG AG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAACAGCAGCAGAGTCTTCATC 0.584 28 40 MTFR1 9650 broad.mit.edu;hgsc.bcm.edu 37 8 66620197 66620197 + Frame_Shift_Del DEL A A - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATGAAGTTGAAAAAGGAATT 0.443 43 124 VPS13B 157680 broad.mit.edu;hgsc.bcm.edu 37 8 100796702 100796702 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAAATCCCCACAGGTATTTGA 0.468 39 69 TBC1D31 93594 broad.mit.edu;hgsc.bcm.edu 37 8 124105886 124105886 + Frame_Shift_Del DEL T T - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GATAATTCCATTTTTGCCTGG 0.348 18 42 RGS3 5998 broad.mit.edu;hgsc.bcm.edu 37 9 116246504 116246506 + In_Frame_Del DEL CTT CTT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCCACGAGCACTTCTTCTTGTAA 0.473 38 77 PPP1R26 9858 broad.mit.edu;hgsc.bcm.edu 37 9 138379043 138379043 + Frame_Shift_Del DEL G G - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CAGAGGGCCAGGGGGGTCCCA 0.701 71 135 TAF3 83860 broad.mit.edu;hgsc.bcm.edu 37 10 8007427 8007427 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCCCCAGCACCCCCACTGGT 0.488 61 83 SVIL 6840 broad.mit.edu;hgsc.bcm.edu 37 10 29760116 29760116 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCACCACCATCCCCCCCTGGA 0.527 16 20 SVIL 6840 broad.mit.edu;hgsc.bcm.edu 37 10 29822002 29822004 + In_Frame_Del DEL CTT CTT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 tctccttccccttcttcttcttc 0.498 12 48 SLK 9748 broad.mit.edu;hgsc.bcm.edu 37 10 105727509 105727511 + In_Frame_Del DEL CTT CTT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GAAAAATGTCCTTCTTCAATTTC 0.483 41 156 PWWP2B 170394 broad.mit.edu;hgsc.bcm.edu 37 10 134218375 134218375 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTCGAAGGCGCCCCCTTCCCT 0.751 11 29 TUBGCP2 10844 broad.mit.edu;hgsc.bcm.edu 37 10 135103416 135103418 + In_Frame_Del DEL GTT GTT - rs141945979 byFrequency TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGTACTTGTCGTTGTAATCCTCC 0.581 15 73 QSER1 79832 broad.mit.edu;hgsc.bcm.edu 37 11 32997894 32997895 + Frame_Shift_Ins INS - - A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTTCGGTGCAGAAAAAAAATGA 0.292 20 44 HIPK3 10114 broad.mit.edu;hgsc.bcm.edu 37 11 33308890 33308891 + Frame_Shift_Ins INS - - A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCACTGCACTGAAAAAATTGAA 0.391 34 169 MTA2 9219 broad.mit.edu;hgsc.bcm.edu 37 11 62362913 62362916 + Frame_Shift_Del DEL GAGA GAGA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTGTGTAAGGAGAGAGACTTTGA 0.51 36 157 RCE1 9986 broad.mit.edu;hgsc.bcm.edu 37 11 66612694 66612696 + In_Frame_Del DEL TCT TCT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGGGGAACATCTTCTTGTCTGC 0.527 30 51 TBX10 347853 broad.mit.edu;hgsc.bcm.edu 37 11 67402373 67402373 + Frame_Shift_Del DEL G G - rs144542807 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCACCTGGAAGGGGGGGAACA 0.677 43 58 PCF11 51585 broad.mit.edu;hgsc.bcm.edu 37 11 82877339 82877340 + Frame_Shift_Del DEL AG AG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TCAGAAAAACAGGGGACAAAAC 0.411 11 18 CACNB3 784 broad.mit.edu;hgsc.bcm.edu 37 12 49221502 49221504 + In_Frame_Del DEL GGA GGA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCGCCACCTGGAGGAGGACTAT 0.631 33 148 OAS1 4938 broad.mit.edu;hgsc.bcm.edu 37 12 113354493 113354494 + Frame_Shift_Ins INS - - A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATTATGACTTTAAAAACCCCAT 0.431 78 123 GPATCH2L 55668 broad.mit.edu;hgsc.bcm.edu 37 14 76668169 76668173 + Frame_Shift_Del DEL AAGAA AAGAA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AAAATGCCACAAGAAAAGAGCCCTG 0.488 40 48 UNC79 57578 broad.mit.edu;hgsc.bcm.edu 37 14 93963615 93963615 + Frame_Shift_Del DEL G G - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCGAGTACAGGGGGTTGCAG 0.493 28 16 ZNF770 54989 broad.mit.edu;hgsc.bcm.edu 37 15 35274621 35274621 + Frame_Shift_Del DEL T T - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TTGGCCAAGATTTTTTTAACA 0.328 11 26 TSR3 115939 broad.mit.edu;hgsc.bcm.edu 37 16 1400178 1400180 + In_Frame_Del DEL AAG AAG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTTCAGGTCCAAGAAGCCCTTGC 0.591 21 44 FAM65A 79567 broad.mit.edu;hgsc.bcm.edu 37 16 67572573 67572575 + Splice_Site DEL AGG AGG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCTCTCCTTCAGGAGTTTCCCGG 0.66 87 90 ATMIN 23300 broad.mit.edu;hgsc.bcm.edu 37 16 81076800 81076801 + Frame_Shift_Del DEL TG TG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AATGGAAAACTGTGCACAAAAC 0.376 22 67 GPS2 2874 broad.mit.edu;hgsc.bcm.edu 37 17 7216932 7216935 + Frame_Shift_Del DEL AGTG AGTG - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTGGGCCCATAGTGAGGTGGGGGC 0.574 103 38 ALDH3A1 218 broad.mit.edu;hgsc.bcm.edu 37 17 19641649 19641649 + Frame_Shift_Del DEL G G - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCCGGGCTCGGGGGGTATCT 0.627 139 67 NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29562657 29562660 + Frame_Shift_Del DEL TGTT TGTT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CTGGTTACTCTGTTTGATTCTCGG 0.412 236 86 FBXL20 84961 broad.mit.edu;hgsc.bcm.edu 37 17 37420470 37420471 + Frame_Shift_Del DEL AT AT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTGGCAGTCATAGAGTTCTAT 0.48 166 77 PLEKHH3 79990 broad.mit.edu;hgsc.bcm.edu 37 17 40820242 40820244 + In_Frame_Del DEL GGA GGA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GTCTTGGCATGGAGGAGAAGAGC 0.65 40 15 ADNP2 22850 broad.mit.edu;hgsc.bcm.edu 37 18 77896426 77896426 + Frame_Shift_Del DEL A A - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ATTAGATCCTAAAAAATATGA 0.358 34 29 MCOLN1 57192 broad.mit.edu;hgsc.bcm.edu 37 19 7594070 7594072 + In_Frame_Del DEL CTT CTT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCTACCTGACCTTCTTCCACAAC 0.581 21 82 SALL4 57167 broad.mit.edu;hgsc.bcm.edu 37 20 50400983 50400983 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGGTAGGAACCCCCCCACTC 0.562 24 115 ZNF831 128611 broad.mit.edu;hgsc.bcm.edu 37 20 57769140 57769140 + Frame_Shift_Del DEL G G - rs55786258 by1000genomes TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGGCACAGTTGGGGGGGGACA 0.682 18 56 DIP2A 23181 broad.mit.edu;hgsc.bcm.edu 37 21 47954526 47954527 + Frame_Shift_Ins INS - - G TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GGCAGTACGGTGGGGGTCACAG 0.535 26 31 SHROOM2 357 broad.mit.edu;hgsc.bcm.edu 37 X 9900853 9900853 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 CCCCAGTTCGCCCCCCAGAAA 0.627 23 42 ACOT9 23597 broad.mit.edu;hgsc.bcm.edu 37 X 23723697 23723698 + Frame_Shift_Ins INS - - A TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGATCCGATTGAAAATGTTCCG 0.401 97 36 POU3F4 5456 broad.mit.edu;hgsc.bcm.edu 37 X 82764415 82764418 + Frame_Shift_Del DEL CTGA CTGA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 GCCATGATCTCTGACTGGAGGAAG 0.485 12 5 SLC6A14 11254 broad.mit.edu;hgsc.bcm.edu 37 X 115582769 115582770 + Frame_Shift_Ins INS - - T TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGGATTTGCTATTTTTTCTATA 0.332 157 48 USP26 83844 broad.mit.edu;hgsc.bcm.edu 37 X 132161205 132161205 + Frame_Shift_Del DEL A A - rs61758857 TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGGTATCTTTAAAAAAAAGTA 0.388 84 36 ATP11C 286410 broad.mit.edu;hgsc.bcm.edu 37 X 138869332 138869334 + Splice_Site DEL TCT TCT - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 AGCTACTTACTCTTCTATTTCTT 0.345 28 14 FAM50A 9130 broad.mit.edu;hgsc.bcm.edu 37 X 153678435 153678437 + In_Frame_Del DEL GGA GGA - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 ACGCCACTGTGGAGAAGGATGAG 0.616 93 63 ARID1A 8289 broad.mit.edu 37 1 27088659 27088659 + Frame_Shift_Del DEL C C - TCGA-HT-8564-01A-11D-2395-08 TCGA-HT-8564-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx f41cf33f-58da-40f9-890d-cec026fe2f70 7bdf8707-ae9f-433e-837e-789e5883a173 TGCAGAGGAACCCCCAGATGC 0.512 13 225