Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count KIAA1462 57608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 30318651 30318651 + Silent SNP G G A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf GCAGGCTGTGGGCTTGGGCCA 0.572 38 256 NRAP 4892 hgsc.bcm.edu;broad.mit.edu 37 10 115380379 115380379 + Missense_Mutation SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf AATGAGTTCTCCTGCCTTCTT 0.498 9 109 EIF3A 8661 hgsc.bcm.edu;broad.mit.edu 37 10 120802275 120802275 + Missense_Mutation SNP T T G TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CTTCTCCACGTCTCCACTCCC 0.423 9 158 OR5M11 219487 hgsc.bcm.edu;broad.mit.edu 37 11 56310625 56310625 + Missense_Mutation SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf AGCAGGGTGACGAGGTAAACA 0.473 6 109 ZFPL1 7542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 64855417 64855417 + Missense_Mutation SNP G G A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf GCTGGGTCTCGGAAGCGGCCG 0.697 13 85 SORL1 6653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 121358800 121358800 + Silent SNP T T A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf TCTGCAACACTCTTCAAGGCT 0.517 64 292 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 109690903 109690903 + Silent SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CCCACATCACCGTGCCAGATG 0.512 33 263 LATS2 26524 hgsc.bcm.edu;broad.mit.edu 37 13 21557659 21557659 + Missense_Mutation SNP A A T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf GTAGAGTTTGACCACCCACTC 0.537 13 189 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631838 90631838 + Missense_Mutation SNP C C T rs121913503 TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf ATGGGCGTGCCTGCCAATGGT 0.632 15 71 TMEM199 147007 hgsc.bcm.edu;ucsc.edu 37 17 26685983 26685983 + Missense_Mutation SNP T T C rs35276012 byFrequency TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CAGTGAAATCTATCTCCCAGA 0.433 6 69 ZNF177 7730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9492389 9492389 + Missense_Mutation SNP T T G TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf GAAAAAGCCTTTAGCACAAGC 0.448 32 163 KCNK6 9424 hgsc.bcm.edu;broad.mit.edu 37 19 38817239 38817239 + Missense_Mutation SNP G G A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CTAGGCTATGGGTACACAACG 0.572 8 150 AURKAIP1 54998 hgsc.bcm.edu;broad.mit.edu 37 1 1309600 1309600 + Missense_Mutation SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf AGCCACAGTCCCTGCGGTCCC 0.657 7 70 NRXN1 9378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 50723230 50723230 + Nonsense_Mutation SNP G G C TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CGTAATGTAAGTACCTGGGAA 0.353 4 11 MRPS5 64969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 95773974 95773974 + Missense_Mutation SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CATGAGTTTCCACTCCATCCT 0.532 16 100 GYG1 2992 hgsc.bcm.edu;broad.mit.edu 37 3 148744693 148744693 + Missense_Mutation SNP G G C TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf ACAACATCAAGAGGAAACTTG 0.458 8 112 HERPUD2 64224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 35707097 35707097 + Silent SNP T T C TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf TTTGTGCTTGTGGAAGGGTAC 0.458 30 122 WNK3 65267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54335536 54335536 + Missense_Mutation SNP C C A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf ACCAATGACACTCTTAGCAAA 0.413 16 53 TLR6 10333 broad.mit.edu;ucsc.edu 37 4 38829218 38829218 + Missense_Mutation SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf CCTGGCCCTGCGCCGAGTCTG 0.502 22 111 ARMC5 79798 broad.mit.edu;ucsc.edu 37 16 31470908 31470908 + Silent SNP G G A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf AGCTCGCGGCGGCGGCCGGGG 0.711 3 18 OTOGL 283310 broad.mit.edu;ucsc.edu 37 12 80749688 80749688 + Silent SNP C C T TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf TTGTCATGGGCATCATTGATA 0.393 23 194 N4BP2 55728 broad.mit.edu;hgsc.bcm.edu 37 4 40104251 40104252 + Frame_Shift_Ins INS - - A TCGA-HT-8113-01A-11D-2395-08 TCGA-HT-8113-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d fcc61745-3e32-4bb2-843c-73edb053d9cf GTAGCAGTCTCAATCAAAAACA 0.411 12 51