Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count EBF3 253738 hgsc.bcm.edu;broad.mit.edu 37 10 131671806 131671806 + Missense_Mutation SNP T T G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 ACAAACATGTTGTCTGACACG 0.512 4 49 JAKMIP3 282973 hgsc.bcm.edu;broad.mit.edu 37 10 133967332 133967332 + Splice_Site SNP G G T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 GAGCGAGAAGGTTGGTGGCAC 0.592 12 194 MMP26 56547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5012621 5012621 + Missense_Mutation SNP T T A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TGGTTGGCCCTTTGATGGGCC 0.463 55 205 GALNT6 11226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 51751986 51751986 + Missense_Mutation SNP G G T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 ACCAGGAAAAGTTGTGACAGT 0.517 22 110 STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104099417 104099417 + Missense_Mutation SNP A A G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CAGGGTAATGAGAAGAGGAGA 0.428 8 33 PCDH20 64881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 61987072 61987072 + Missense_Mutation SNP C C T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 AACACTTCCTCCAATCTTACT 0.398 8 110 MYCBP2 23077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 77862494 77862494 + Missense_Mutation SNP A A T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TGATTACTGTATTCTCTAAGT 0.323 7 40 CIITA 4261 hgsc.bcm.edu;broad.mit.edu 37 16 11002910 11002910 + Silent SNP G G A rs148091568 byFrequency TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 ACACGGTGGCGCTGTGGGAGT 0.602 7 59 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577022 7577022 + Nonsense_Mutation SNP G G A rs121913344 TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TGCTTACCTCGCTTAGTGCTC 0.562 32 75 MYOCD 93649 hgsc.bcm.edu;broad.mit.edu 37 17 12655919 12655919 + Silent SNP T T A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CTTCCTCTTCTACCAGTGCCC 0.582 10 137 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 31323665 31323665 + Missense_Mutation SNP A A G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 GTTAAAAACCATCCAGGGAAC 0.408 17 70 MUC16 94025 hgsc.bcm.edu;broad.mit.edu 37 19 9069935 9069935 + Silent SNP G G T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TGGAGATGTAGGGTGACATTT 0.473 11 125 BCAM 4059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45322041 45322041 + Missense_Mutation SNP C C T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TCGCTCAGTTCTATCACCTTC 0.627 23 147 MYCBP 26292 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 39330370 39330370 + Missense_Mutation SNP G G A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CTCCTGAGGTGGTTCATACTG 0.328 13 53 SMC1B 27127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 45779410 45779410 + Silent SNP G G A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TCTCATCCCAGCATCTAGCCT 0.343 9 45 SCN1A 6323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 166897764 166897764 + Missense_Mutation SNP T T A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 GTAAGCACATTATTGAAATGG 0.363 18 64 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 ATAAGCATGACGACCTATGAT 0.393 11 56 TRANK1 9881 hgsc.bcm.edu;broad.mit.edu 37 3 36875229 36875229 + Silent SNP A A G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 GCTTCTGCTAAGCGTTTCCGA 0.512 8 116 NKX3-2 579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 13543758 13543758 + Silent SNP G G C TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TCTGGTCGTCGCGCACCAGCA 0.647 8 21 RBPJ 3516 hgsc.bcm.edu;broad.mit.edu 37 4 26432517 26432517 + Missense_Mutation SNP A A G rs1064404 TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CTTCGAGCCAATTCAAGCCAG 0.498 8 89 FAT4 79633 hgsc.bcm.edu;broad.mit.edu 37 4 126239282 126239282 + Silent SNP C C G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TAGTAACTCTCCTAGATGTGA 0.498 6 60 DCLK2 166614 hgsc.bcm.edu;broad.mit.edu 37 4 151153981 151153981 + Splice_Site SNP G G A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 GAATCTCTTGGTATGTCATCC 0.438 9 119 CRHBP 1393 hgsc.bcm.edu;broad.mit.edu 37 5 76259212 76259212 + Silent SNP G G A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TTGTGGAGCTGCTGGGAGGAA 0.458 9 113 PCDHB3 56132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140480508 140480508 + Missense_Mutation SNP G G A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 AAATTGGACCGGGAGGAGCTA 0.483 11 115 CRISP1 167 hgsc.bcm.edu;broad.mit.edu 37 6 49814258 49814258 + Missense_Mutation SNP T T C TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 AGTAGTTATGTCATCATCCGT 0.403 7 87 TINAG 27283 hgsc.bcm.edu;broad.mit.edu 37 6 54254705 54254705 + Silent SNP G G A TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 GCCAACTGACGAGTTCTGATG 0.408 9 129 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100679992 100679992 + Missense_Mutation SNP G G T rs148096926 byFrequency TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TCAGTTCTGAGGCTAGCACCC 0.502 88 449 GAPVD1 26130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 128094894 128094894 + Missense_Mutation SNP A A G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CCAGACATGGATGAAATAACT 0.448 15 61 NCOA2 10499 broad.mit.edu;ucsc.edu 37 8 71044226 71044226 + Missense_Mutation SNP C C T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TGGAGAACTGCCAAATGGCTG 0.453 3 26 TH 7054 broad.mit.edu;ucsc.edu 37 11 2190969 2190969 + Missense_Mutation SNP C C T TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CCCTCCTTCTCCTCAAAGGCC 0.692 6 54 DDX52 11056 broad.mit.edu;ucsc.edu 37 17 35974371 35974371 + Missense_Mutation SNP C C G TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 CTACTTTCTTCTTGCTGTTCT 0.323 5 28 BEST1 7439 broad.mit.edu;ucsc.edu 37 11 61724345 61724345 + Silent SNP T T C TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 ACACAAGCAGTTGGAGAAACT 0.577 30 279 AGBL1 123624 broad.mit.edu;ucsc.edu 37 15 86838484 86838484 + Splice_Site SNP A A C TCGA-HT-8106-01A-11D-2395-08 TCGA-HT-8106-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx eda36bc8-66a9-4901-95f4-d98528290e84 dfb6bde7-00dc-4892-a8e2-a111cff05939 TTTCTGCTCCAGACTCATCTT 0.398 4 27