Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu	37	12	51882579	51882579	+	Missense_Mutation	SNP	A	A	G	rs138940118		TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	TCTCTGTACTATCTTGATATT	0.453	6	88
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	30500576	30500576	+	Splice_Site	SNP	G	G	A			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	CCTGGGCAGGGCCATGCAGTC	0.622	22	60
POFUT2	23275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	46685545	46685545	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	GGTGCCAATAAAAAACCTGCA	0.498	12	30
MFNG	4242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	37882152	37882152	+	Silent	SNP	G	G	A			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	CGCAGACACAGGAGCCCCATG	0.682	10	43
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	55582839	55582839	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	GAAGAGGCATGGGGTAGAAAA	0.443	19	50
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	ATAAGCATGACGACCTATGAT	0.393	26	61
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	56420389	56420389	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	TCCAAGTCACTCAGTTTATCA	0.453	7	68
TMEM68	137695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	56663637	56663637	+	Silent	SNP	G	G	A			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	TAGCTAACAAGTGGCCACTCC	0.418	20	90
PHF16	9767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	46884202	46884202	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	CCCAGACACCACAGAGCCTGG	0.463	19	60
USP11	8237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	47101902	47101902	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	TCCAAACACACGGGCATCTCG	0.567	13	47
ZNF182	7569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	47836606	47836606	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	TTTCCACATTCAGGACACTCA	0.398	38	91
ATP11C	286410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	138886675	138886675	+	Silent	SNP	G	G	C			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	TGACATAACAGGTTCCATCAG	0.393	74	207
AOC1	26	broad.mit.edu;ucsc.edu	37	7	150555013	150555013	+	Silent	SNP	C	C	T			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	CTGGCTACGTCCACGCCACCT	0.552	22	86
NF1	4763	broad.mit.edu;hgsc.bcm.edu	37	17	29556985	29556985	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-8010-01A-11D-2395-08	TCGA-HT-8010-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6fafd282-546e-4f61-b4f3-11fcc9afe5ef	75055f5e-3025-4fe5-9955-2be30e9ed69a	GATGTTAAATCTGGTCAGGTA	0.348	41	119