Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR4C16	219428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55339753	55339753	+	Silent	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	TCAAGACCAGCCAGGCACTTA	0.388	35	102
GPRC5D	55507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	13103216	13103216	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	ATTGTGACCACGATGCCAAGT	0.532	24	122
TGM5	9333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	43545093	43545093	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	AATTCTCACTCCAGTTTCCAT	0.532	17	79
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu	37	16	24372952	24372952	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	AGTTCTCGCTCCACCGAGCCC	0.577	9	111
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	7997604	7997604	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	TCCGTGAGCACCTCCGACATC	0.652	19	99
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	19	9073488	9073488	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	TGGGAACTTTGTTGACTGAGC	0.458	8	124
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	41990504	41990504	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	CTTCTTGCAGCGAATTCCACA	0.493	19	96
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu	37	1	176668593	176668593	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	GATGCAGCACTCCTGACTTCT	0.557	9	164
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	215960035	215960035	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	CGTGTTTACACTCCCTGTATG	0.433	13	99
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	ATAAGCATGACGACCTATGAT	0.393	14	59
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu	37	2	233348787	233348787	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	GCGATTGGCCTGGCCCAAGCA	0.617	11	157
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	241513688	241513688	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	GCTGTCACCAACGCCACGTGG	0.632	23	73
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76849196	76849196	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	TGCCATTCGAAGAATTTCAAA	0.348	18	72
TENM1	10178	hgsc.bcm.edu;broad.mit.edu	37	X	123517776	123517776	+	Silent	SNP	G	G	A			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	GACCTCGGCTGCTGAACACAG	0.423	8	133
SMARCA1	6594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	128633716	128633716	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	CACCATTCTCGTTGCATCTTA	0.318	31	103
PECR	55825	broad.mit.edu;ucsc.edu	37	2	216904042	216904042	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	ATCTTTTTGACAACAGAAAGG	0.483	18	70
ATAD2B	54454	broad.mit.edu;ucsc.edu	37	2	23985167	23985167	+	Silent	SNP	C	C	G			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	TTTCTGTCTTCCGAGCTCCAG	0.388	5	22
MS4A14	84689	broad.mit.edu;ucsc.edu	37	11	60164158	60164158	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	TCTCTGCTGGATTTTCTGAAG	0.443	6	37
TP53	7157	broad.mit.edu;ucsc.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666		TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	AGGCGGCTCATAGGGCACCAC	0.557	5	46
TP53	7157	broad.mit.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7902-01A-12D-2395-08	TCGA-HT-7902-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97376c7c-f8e6-4dbf-8ba4-473c5d63c770	b902f262-ad73-455f-8fa4-4d3e4babcd7b	ATGGTGGGGGCAGCGCCTCAC	0.652	16	61