Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CACNB2	783	hgsc.bcm.edu;ucsc.edu	37	10	18690025	18690025	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	AATTCTGATATCTGTGTAAGC	0.507	39	49
GAD2	2572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26589805	26589805	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	AATTTCTTCCGCATGGTCATC	0.463	92	111
PMEL	6490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	56350746	56350746	+	Silent	SNP	C	C	T	rs149851365	byFrequency	TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	TAATACTTTCCGTAGACATGA	0.502	34	56
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	1265549	1265549	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	GATGGCTACGGGCATGCGCGC	0.721	12	17
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	TCGGATAAGATGCTGAGGAGG	0.562	22	46
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6270683	6270683	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	CGGACAAACACCATCCAGTCG	0.622	5	49
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	29694857	29694857	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	CGTCCAGCACCGAGCTGGAGA	0.602	51	99
MZT2A	653784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	132241765	132241765	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	AATACTCCCCCGAGGGCAGCG	0.632	9	112
STAM2	10254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	153003685	153003685	+	Silent	SNP	T	T	C			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	CCTGAGAACCTGCTGGAGGAA	0.373	55	74
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	ATAAGCATGACGACCTATGAT	0.393	18	73
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	54429276	54429276	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	TGAATCTTCACCTCTGGTTGG	0.368	36	59
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	51897948	51897948	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	ACATTCACAATGCGTCCATCT	0.368	28	50
PTBP3	9991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	114989706	114989706	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	GTTGGAAAGATGCAGAGTGGC	0.368	52	70
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70767813	70767813	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	CTTGGAGTAATCTTGGCTGTG	0.378	75	10
TBC1D9	23158	broad.mit.edu;ucsc.edu	37	4	141677165	141677165	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	CCACAGCGCGTTGGCCAGCAA	0.701	7	20
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7577150	7577151	+	Frame_Shift_Del	DEL	TT	TT	-	rs72661119		TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	TCCCAGTAGATTACCACTACTC	0.52	17	23
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76938001	76938001	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-7879-01A-11D-2395-08	TCGA-HT-7879-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d315e0c-c20e-4f62-ae8b-42bdd9dbe053	826113c1-03bb-49be-82f0-e1dd43ec6cbc	ATCAGTGGAAGCACTTGCTTG	0.418	122	35